BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031425
(160 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 140/160 (87%), Positives = 154/160 (96%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLRVTGIR+LPVWYEAGAV+F+FASTRTL +VQLLLMGFAETKRYMD++
Sbjct: 107 MAGVAGILFTDLLRVTGIRKLPVWYEAGAVKFEFASTRTLIVVQLLLMGFAETKRYMDFV 166
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ KEGSFFGLE+ALEGLEPGYPGGPLLNPLGLA+DI NA WKLKEIKNGRLAMVA
Sbjct: 167 SPGSQAKEGSFFGLESALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVA 226
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
M+GIFVQA+VTH GPIDN++EHLS+PWH+TIIQTLANSGS
Sbjct: 227 MVGIFVQAAVTHAGPIDNLIEHLSNPWHRTIIQTLANSGS 266
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 294 bits (752), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 137/160 (85%), Positives = 153/160 (95%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G+AGILFTDLLRVTGIR+LPVWYEAGAV+++FASTRTL +VQLL MG+AET+RYMDY+
Sbjct: 110 MLGIAGILFTDLLRVTGIRKLPVWYEAGAVKYEFASTRTLLVVQLLWMGYAETRRYMDYV 169
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ KEGSFFG+EAALEGLEPGYPGGPLLNP GLAKDIR+AR+WKLKEIKNGRLAMVA
Sbjct: 170 SPGSQNKEGSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVA 229
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
MLGIFVQA+VTH GPIDN+LEHLSDPWHKTIIQTL++S S
Sbjct: 230 MLGIFVQAAVTHTGPIDNLLEHLSDPWHKTIIQTLSHSTS 269
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 281 bits (720), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 133/160 (83%), Positives = 150/160 (93%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV GIL TDLLRVTGI ++PVW+EAGAV++ FA+T+TLF+VQL+LMGF ETKRYMD++
Sbjct: 104 MLGVFGILVTDLLRVTGISKIPVWFEAGAVKYDFANTKTLFLVQLVLMGFVETKRYMDFV 163
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ KEGSFFGLEA+L+GLEPGYPGGPLLNPLGLAKDI NA +WKLKEIKNGRLAMVA
Sbjct: 164 SPGSQAKEGSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVA 223
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
MLGIFVQASVTHVGPIDN++EHLS+PWHKTIIQTLANS S
Sbjct: 224 MLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLANSSS 263
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/161 (83%), Positives = 147/161 (91%), Gaps = 1/161 (0%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAGILFTDLLR TGIR LPVWYEAGAV+F FAST+TL +VQ LLMGFAETKRYMD++
Sbjct: 96 MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFV 155
Query: 61 SPGSQTKEGSFF-GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
SPGSQ KEGSFF GLEAALEGLEPGYPGGPLLNPLGLAKD++NA +WKLKEIKNGRLAM+
Sbjct: 156 SPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMM 215
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
AMLG FVQASVTH GPIDN++EHLS+PWHKTIIQTL S S
Sbjct: 216 AMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/161 (83%), Positives = 147/161 (91%), Gaps = 1/161 (0%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAGILFTDLLR TGIR LPVWYEAGAV+F FAST+TL +VQ LLMGFAETKRYMD++
Sbjct: 88 MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFV 147
Query: 61 SPGSQTKEGSFF-GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
SPGSQ KEGSFF GLEAALEGLEPGYPGGPLLNPLGLAKD++NA +WKLKEIKNGRLAM+
Sbjct: 148 SPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMM 207
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
AMLG FVQASVTH GPIDN++EHLS+PWHKTIIQTL S S
Sbjct: 208 AMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 248
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 131/158 (82%), Positives = 148/158 (93%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGIL TDLLRVTGI LPVWYEAGAV+F+FAST LFIVQL+LMGF ETKRYMD+
Sbjct: 106 MAGVAGILVTDLLRVTGISNLPVWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFT 165
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ KEGSFFGLEAALEGLEPGYPGGPLLNPLGLA+DI+NA +WKLKEIKNGRLAMVA
Sbjct: 166 NPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVA 225
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG+FVQASVTH GPI+N++EHLS+PWHKTIIQT++++
Sbjct: 226 MLGVFVQASVTHAGPIENLVEHLSNPWHKTIIQTISST 263
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/161 (83%), Positives = 147/161 (91%), Gaps = 1/161 (0%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAGILFTDLLR TGIR LPVWYEAGAV+F FAST+TL +VQ LLMGFAETKRY+DY+
Sbjct: 96 MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYVDYV 155
Query: 61 SPGSQTKEGSFF-GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
SPGSQ KEGSFF G+EAALEGLEPGYPGGPLLNPLGLAKDI+NA +WKLKEIKNGRLAM+
Sbjct: 156 SPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMM 215
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
AMLG FVQASVTH GPIDN++EHLS+PWHKTIIQTL S S
Sbjct: 216 AMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 134/161 (83%), Positives = 146/161 (90%), Gaps = 1/161 (0%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAGILFTDLLR TGIR LPVWYEAGAV+F FA T+TL +VQ LLMGFAETKRYMD++
Sbjct: 96 MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFACTKTLIVVQFLLMGFAETKRYMDFV 155
Query: 61 SPGSQTKEGSFF-GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
SPGSQ KEGSFF GLEAALEGLEPGYPGGPLLNPLGLAKD++NA +WKLKEIKNGRLAM+
Sbjct: 156 SPGSQAKEGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMM 215
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
AMLG FVQASVTH GPIDN++EHLS+PWHKTIIQTL S S
Sbjct: 216 AMLGFFVQASVTHTGPIDNLVEHLSNPWHKTIIQTLFTSTS 256
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 133/160 (83%), Positives = 151/160 (94%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV GIL TDLLRVTG+ ++PVW+EAGAV+++F +T+TL IVQLLLMGFAETKRYMD+I
Sbjct: 54 MLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFI 113
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ KEGSFFGLEA+ EGLEPGYPGGPLLNPLGLAKDI+NARE KLKEIKNGRLAMVA
Sbjct: 114 SPGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVA 173
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
+LGIFVQASVTHVGPIDN++EHLS+PWHKT+IQTLA+SGS
Sbjct: 174 ILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 213
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 277 bits (708), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/161 (82%), Positives = 146/161 (90%), Gaps = 1/161 (0%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAGILFTDLLR TGIR LPVWYEAGAV+F FAST+TL +VQ LLMGFAETKRYMD++
Sbjct: 96 MLGVAGILFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFV 155
Query: 61 SPGSQTKEGSFF-GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
SPGSQ KEGSFF G+EAALEGLEPGYPGGPLLNPLGLAKD++NA +WKLKEIKNGRLAM+
Sbjct: 156 SPGSQAKEGSFFFGIEAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMM 215
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
AMLG FVQASVTH GPIDN++EHLS+PWH TIIQTL S S
Sbjct: 216 AMLGFFVQASVTHTGPIDNLVEHLSNPWHXTIIQTLFTSTS 256
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 132/160 (82%), Positives = 150/160 (93%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV GIL TDLLRVTG+ ++PVW+EAGAV+++F +T+TL IVQLLLMGFAETKRYMD+I
Sbjct: 107 MLGVFGILVTDLLRVTGLSKIPVWFEAGAVKYEFTNTQTLIIVQLLLMGFAETKRYMDFI 166
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGSQ KEGSFFGLEA+ EGLEPGYPGGPLLNPLGLAKDI+NARE KLKEIKNGRLAMVA
Sbjct: 167 GPGSQAKEGSFFGLEASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVA 226
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
+LGIFVQASVTHVGPIDN++EHLS+PWHKT+IQTLA+SGS
Sbjct: 227 ILGIFVQASVTHVGPIDNLVEHLSNPWHKTVIQTLASSGS 266
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 129/158 (81%), Positives = 145/158 (91%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV+G+L TDLLRVTGI ELPVWY AGAVE+ FA+ RTLFIVQLLLMGF ETKRYMD+
Sbjct: 100 MLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFK 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ +EG+FFGLEAA +GLEPGYPGGPLLNPLG+AKDI+NA +WKLKEIKNGRLAMVA
Sbjct: 160 SPGSQAQEGTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVA 219
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLGIFVQA VTH GPIDN++EHLS+PWHKTIIQTL++S
Sbjct: 220 MLGIFVQAYVTHTGPIDNLVEHLSNPWHKTIIQTLSSS 257
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 127/160 (79%), Positives = 148/160 (92%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV GIL TDLLRV G+ +P+W+EAGAV+++FA+T TL +VQLLLMG+AET+RYMD++
Sbjct: 108 MLGVLGILVTDLLRVAGVNSIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETRRYMDFV 167
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ KEGSFFGLEA+L GLEPGYPGGPLLNPLGLAKDI++AREWKLKEIKNGRLAMVA
Sbjct: 168 SPGSQAKEGSFFGLEASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVA 227
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
+LGIFVQASVTHVGPIDN++EHLS+PWHKTIIQ LA+S S
Sbjct: 228 ILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQILASSSS 267
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 129/160 (80%), Positives = 145/160 (90%), Gaps = 1/160 (0%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLR TG+ LPVWYEAGA +F+FA+T TLFIVQ+LLMGF ETKRYMD+
Sbjct: 114 MAGVAGILFTDLLRTTGLSNLPVWYEAGATKFQFANTTTLFIVQMLLMGFVETKRYMDFK 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ E SFFGLEAALEGLEPGYPGGP+LNPLG+AKDI+NA EWKLKEIKNGRLAMVA
Sbjct: 174 NPGSQ-GEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVA 232
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
+LGIFVQASVTHVGP++N++EHLSDPWH TIIQ L+ S S
Sbjct: 233 ILGIFVQASVTHVGPLENLVEHLSDPWHTTIIQILSASNS 272
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 121/158 (76%), Positives = 137/158 (86%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGFAETKRYMD+I
Sbjct: 104 MAGVAGILATDLIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFI 163
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F G+EAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNGRLAMVA
Sbjct: 164 NPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVA 223
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTHVGPIDN+L HLSDP++K II TL++S
Sbjct: 224 MLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/158 (75%), Positives = 136/158 (86%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGIL TD +RV+GI LPVW+EAGA +F FA+T LF VQLLLMGFAETKRYMD+I
Sbjct: 104 MAGVAGILATDFIRVSGINNLPVWFEAGATKFDFANTTALFFVQLLLMGFAETKRYMDFI 163
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F G+EAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNGRLAMVA
Sbjct: 164 NPGSQAEEGTFLGIEAALAGSQPGYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVA 223
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTHVGPIDN+L HLSDP++K II TL++S
Sbjct: 224 MLGFIVQASVTHVGPIDNLLTHLSDPFNKNIIHTLSSS 261
>gi|413939029|gb|AFW73580.1| hypothetical protein ZEAMMB73_964613 [Zea mays]
Length = 158
Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 134/158 (84%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+
Sbjct: 1 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 60
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVA
Sbjct: 61 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVA 120
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTH GPIDN+L HLSDP++K II T ++S
Sbjct: 121 MLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 158
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 118/155 (76%), Positives = 133/155 (85%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGF ETKRYMD++
Sbjct: 100 MAGVAGILGTDLIRVSGIGNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDFV 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ KEG+F G+EA+LEGL+PGYPGGPL NP+GLAKDI NA E KLKEIKNGRLAMVA
Sbjct: 160 SPGSQAKEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVA 219
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
MLG VQASVTH GPIDN+L HLSDP++K II L
Sbjct: 220 MLGFIVQASVTHAGPIDNLLTHLSDPFNKNIIHAL 254
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 248 bits (632), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 119/158 (75%), Positives = 135/158 (85%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLRV+G +LPVW+EAGA +F+FA+T LF VQLLLMGFAETKRYMD+
Sbjct: 109 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFEFANTTALFFVQLLLMGFAETKRYMDFK 168
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA E KLKEIKNGRLAMVA
Sbjct: 169 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVA 228
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTH GPIDN+L HLSDP++K II ++S
Sbjct: 229 MLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHAFSSS 266
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 134/158 (84%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+
Sbjct: 158 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 217
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVA
Sbjct: 218 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVA 277
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTH GPIDN+L HLSDP++K II T ++S
Sbjct: 278 MLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 315
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 247 bits (630), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 134/158 (84%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+
Sbjct: 112 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 171
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVA
Sbjct: 172 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVA 231
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTH GPIDN+L HLSDP++K II T ++S
Sbjct: 232 MLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 246 bits (629), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/158 (74%), Positives = 134/158 (84%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLRV+G +LPVW+EAGA +F FA+T LF VQL LMGFAETKRYMD+
Sbjct: 112 MAGVAGILFTDLLRVSGNSDLPVWFEAGAAKFDFANTTALFFVQLFLMGFAETKRYMDFK 171
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F GLEAAL G +PGYPGGPL NPLGLAKDI NA + KLKEIKNGRLAMVA
Sbjct: 172 NPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVA 231
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
MLG VQASVTH GPIDN+L HLSDP++K II T ++S
Sbjct: 232 MLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 269
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 116/157 (73%), Positives = 134/157 (85%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGIL TDL+RV+GI LPVW+EAGA +F FA+T LF VQLLLMGF ETKRYMD +
Sbjct: 102 MAGVAGILGTDLIRVSGISNLPVWFEAGATKFDFANTTALFFVQLLLMGFVETKRYMDIV 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGSQ +EG+F G+EA+LEGL+PGYPGGPL NP+GLAKDI+NA E KLKEIKNGRLAMVA
Sbjct: 162 NPGSQAEEGTFLGIEASLEGLQPGYPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVA 221
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
MLG FVQASVTHVGPIDN+L HLSDP++ II +
Sbjct: 222 MLGFFVQASVTHVGPIDNLLIHLSDPFNNNIIHAFTS 258
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 234 bits (597), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 128/157 (81%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAG+AGIL TDLLR G R+LPVWYEAGA EF+FA TRTLF+VQL+LMG+AET+RY DYI
Sbjct: 93 MAGIAGILVTDLLRTVGGRDLPVWYEAGATEFEFADTRTLFVVQLILMGYAETRRYYDYI 152
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGSQ + +F G E AL GL+ GYPGGP +P GL +DI NAR K KE+KNGRLAMVA
Sbjct: 153 SPGSQAAQDTFLGFEDALAGLQSGYPGGPFFDPAGLGRDINNARTLKEKELKNGRLAMVA 212
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
+LG+FVQA T GPIDN+L H+SDPWH TI+QTL++
Sbjct: 213 ILGVFVQAFFTKTGPIDNLLTHVSDPWHNTIVQTLSH 249
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 221 bits (563), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 122/157 (77%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTDLLR +G ++PVW+EAGA +F FA T TLF+VQL+LMGF ETKR+MD +
Sbjct: 52 MAGVAGILFTDLLRASGRTDIPVWFEAGATKFDFADTTTLFVVQLILMGFVETKRWMDIV 111
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGSQ E SFFG EAA EGLE GYPGGPL NPLG A D + + KEIKNGRLAMVA
Sbjct: 112 KPGSQAAEDSFFGFEAAFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVA 171
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
M+G VQA VT GPI+N+L HLSDP H TIIQ +AN
Sbjct: 172 MVGFMVQAYVTKTGPIENLLTHLSDPVHNTIIQRIAN 208
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 98/151 (64%), Gaps = 4/151 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
MAGVAGIL LL G +P WY+AG A+E FA +L VQL L GF E KR+ D
Sbjct: 81 MAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGSLLAVQLFLCGFVEAKRWQD 140
Query: 59 YISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 117
PGSQ + GSF G EA+L+G E GYPGGP +PLGL+K+ +WKLKE+KNGRLA
Sbjct: 141 IRKPGSQGEPGSFLGFEASLKGTSELGYPGGPF-DPLGLSKEADKWADWKLKEVKNGRLA 199
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
M+A LG Q T GP+DN+ HL DPWH
Sbjct: 200 MLAFLGFVAQKYATGAGPVDNLAAHLKDPWH 230
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 156 bits (394), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 98/151 (64%), Gaps = 4/151 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M GVAGIL LL G +P WY+AG A+E FA TL VQL L GF E KR+ D
Sbjct: 75 MTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAPWGTLLAVQLFLCGFVEVKRWQD 134
Query: 59 YISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 117
PGSQ + GSF G E++L+G E GYPGGP +PLGL+K+ +WKLKE+KNGRLA
Sbjct: 135 IRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPF-DPLGLSKEADKWADWKLKEVKNGRLA 193
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
M+A LG Q T GP+DN++ HL DPWH
Sbjct: 194 MLAFLGFVAQKYATGAGPVDNLVAHLKDPWH 224
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/151 (53%), Positives = 95/151 (62%), Gaps = 4/151 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M VAGIL LL G +P WY+AG A+E FA L VQL L GF E KR+ D
Sbjct: 81 MTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAPFGALLAVQLFLTGFVEAKRWQD 140
Query: 59 YISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 117
+ PGSQ ++GSF G E A G + GYPGG + +PLGL+KD +WKLKEIKNGRLA
Sbjct: 141 FKKPGSQAEKGSFLGFETAFAGTGDNGYPGG-IFDPLGLSKDADKLADWKLKEIKNGRLA 199
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
MVA LG Q T GPIDN+ HL+DPWH
Sbjct: 200 MVAFLGFTAQKFATGKGPIDNLAAHLADPWH 230
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 101/156 (64%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY+AG + FA TLFIV+LLLM +AE++R+ D
Sbjct: 115 MLGAAGIFIPELLTKIGILNTPSWYKAGDATY-FADQGTLFIVELLLMAWAESRRWADIA 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG + +E + KE+KNGRLAM+
Sbjct: 174 RPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A+LG FVQA+VTHVGPIDN+ HL+DP+H TI+Q+L
Sbjct: 232 AVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSL 267
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 103/158 (65%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY+AG + FA TLFIV+LLLM +AE++R+ D
Sbjct: 64 MLGAAGIFIPELLTKIGILNTPSWYKAGDATY-FADQGTLFIVELLLMAWAESRRWADIA 122
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG + +E + KE+KNGRLAM+
Sbjct: 123 RPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAML 180
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A+LG FVQA+VTHVGPIDN+ HL+DP+H TI+Q++++
Sbjct: 181 AVLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVSS 218
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 106/165 (64%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ MGFA
Sbjct: 112 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFA 170
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ +PGS K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE
Sbjct: 171 EHRRFQDWYNPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 229
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 230 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ MGFA
Sbjct: 392 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFA 450
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE
Sbjct: 451 EHRRLQDWYNPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 509
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 510 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 138 bits (347), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 106/165 (64%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ MGFA
Sbjct: 112 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFA 170
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ +PGS K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE
Sbjct: 171 EHRRFQDWYNPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 229
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 230 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 106/165 (64%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ MGFA
Sbjct: 112 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFA 170
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ +PGS K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE
Sbjct: 171 EHRRFQDWYNPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 229
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 230 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 105/165 (63%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ MGFA
Sbjct: 408 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFA 466
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G EP YPGGP+ NPLG KD ++ +E KLKE
Sbjct: 467 EHRRLQDWYNPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKE 525
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + I+ +L
Sbjct: 526 VKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 570
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P+WY+AG VE+ FA TLF+++ L+ + E +R+ D
Sbjct: 99 MVGVAGMLIPEVLTKIGVINAPLWYDAGKVEY-FAPASTLFVIEFLMFHYVEVRRWQDIK 157
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F G +L E GYPGG + NPL + E+K KE+ NGRLAM+A
Sbjct: 158 YPGSVNQDPIFKGY--SLPPNEVGYPGG-IFNPLNFPAN----EEYKEKELANGRLAMLA 210
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG +Q++VTH GP +N+L HLSDPWH TI+Q++
Sbjct: 211 FLGFIIQSNVTHQGPFENLLTHLSDPWHHTIVQSI 245
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 82 EPGY-----PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
PGY PG +PLGLA D N + + E++NGR AMV + G+ + +T +G I
Sbjct: 58 SPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVI 117
Query: 137 D 137
+
Sbjct: 118 N 118
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 100/155 (64%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P+WY+AG VE+ FA TLF+++ L+ + E +R+ D
Sbjct: 99 MVGVAGMLIPEVLTKIGVINAPLWYDAGKVEY-FAPASTLFVIEFLMFHYVEVRRWQDIK 157
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F G +L E GYPGG + NPL + E+K KE+ NGRLAM+A
Sbjct: 158 YPGSVNQDPIFKGY--SLPPNEVGYPGG-IFNPLNFPAN----EEYKEKELANGRLAMLA 210
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG +Q++VTH GP +N+L HLSDPWH TI+Q++
Sbjct: 211 FLGFIIQSNVTHQGPFENLLTHLSDPWHHTIVQSI 245
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 82 EPGY-----PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
PGY PG +PLGLA D N + + E++NGR AMV + G+ + +T +G I
Sbjct: 58 SPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVI 117
Query: 137 D 137
+
Sbjct: 118 N 118
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 8/158 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTNIGIINVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LG +Q +VT GP DN+L+HLSDPWH TI+QTL+ S
Sbjct: 215 FLGFIIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSGS 252
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 78 LEGL-EPGY-----PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131
L GL PGY PG +PLGLA+D N + + E+ NGR AM+ + G+ + T
Sbjct: 57 LPGLASPGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFT 116
Query: 132 HVGPID 137
++G I+
Sbjct: 117 NIGIIN 122
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 104/164 (63%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAE 52
M G AG + ++L G+ W++ G + +A TLF++++ LMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLKEI
Sbjct: 168 HRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEI 226
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + ++ +L
Sbjct: 227 KNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 104/164 (63%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI---RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAE 52
M G AG + ++L G+ W++ G + +A TLF++++ LMGFAE
Sbjct: 108 MLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAE 167
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLKEI
Sbjct: 168 HRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEI 226
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP + ++ +L
Sbjct: 227 KNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 100/158 (63%), Gaps = 8/158 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 101 MLGVAGMLLPEVFTSIGILNVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYPGG + NPL A E K KE+ NGRLAM+A
Sbjct: 160 NPGCVNQDPIF--KNYSLPPNECGYPGG-IFNPLNFAA----TEEAKEKELANGRLAMLA 212
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+++
Sbjct: 213 FLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLSSN 250
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 65 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 124
+ K+G + A+ L+ PG +PLGLA+D N + + E+ NGR AM+ + G+
Sbjct: 48 EAKKGEWLPGLASPAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGM 107
Query: 125 FVQASVTHVG 134
+ T +G
Sbjct: 108 LLPEVFTSIG 117
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W+ G + +A + TLF+ ++ LMGFA
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALP-WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFA 169
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE
Sbjct: 170 EHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKE 228
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQA VT VGP N+L+HL+DP H I+ +L
Sbjct: 229 VKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F + +L E GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 161 YPGSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 214 FLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGY-----PGGPLLNPLGLAKDIR 101
+ R + PGS F +EA E L P Y PG +PLGLA+D
Sbjct: 26 SSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPE 85
Query: 102 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + + E+ NGR AM+ + G+ + +T +G I+
Sbjct: 86 SLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 23 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 81
V+ AG + +A + TLF+ ++ LMGFAE +R+ D+ PGS K+ F GLE L G
Sbjct: 142 VFPPAGTYNY-WADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSG 199
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FVQA VT VGP N+L+
Sbjct: 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLD 259
Query: 142 HLSDPWHKTIIQTL 155
HL+DP H I+ +L
Sbjct: 260 HLTDPVHNNILTSL 273
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 104/165 (63%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W+ G A + + A + TLF+ ++ LMGFA
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALP-WFRTGVFPPAGTYNYWADSYTLFVFEMALMGFA 169
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F GLE L G EP YPGGP NPLG KD ++ ++ KLKE
Sbjct: 170 EHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKE 228
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQA VT VGP N+L+HL+DP H I+ +L
Sbjct: 229 VKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 23 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 81
V+ AG + +A + TLF+ ++ LMGFAE +R+ D+ PGS K+ F GLE L G
Sbjct: 142 VFPPAGTYNY-WADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSG 199
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FVQA VT VGP N+L+
Sbjct: 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLD 259
Query: 142 HLSDPWHKTIIQTL 155
HL+DP H I+ +L
Sbjct: 260 HLADPVHNNILTSL 273
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 95 MLGVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 153
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F + +L E GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 154 YPGSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLA 206
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 207 FLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 241
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGY-----PGGPLLNPLGLAKDIR 101
+ R + PGS F +EA E L P Y PG +PLGLA+D
Sbjct: 19 SSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPE 78
Query: 102 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + + E+ NGR AM+ + G+ + +T +G I+
Sbjct: 79 SLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 100/159 (62%), Gaps = 12/159 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 37 MLGAVGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYNYWADGYTLFVLEMALMGFA 95
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F GLE L G +P YPGGP NPLG KD ++ +E KLKE
Sbjct: 96 EHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKE 154
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHK 149
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DPWH
Sbjct: 155 VKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPWHN 193
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 99/157 (63%), Gaps = 8/157 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTSIGILNVPKWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L + GYPGG + NPL A E K KE+ NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KSYSLPPNKCGYPGG-IFNPLNFAP----TEEAKEKELANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LG VQ +VT GP DN+L+HL DPWH TIIQTL+N
Sbjct: 215 FLGFIVQHNVTGKGPFDNLLQHLFDPWHNTIIQTLSN 251
Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 26 EAGAVEFKFASTRTLFIV----QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL 81
+A A F+ ++RT F+ +L Y S + K+G + A+ + L
Sbjct: 7 QASAAIFRPCASRTRFLTGSSGKLNREVSFRPSTSSSYNSFKVEAKKGQWLPGLASPDYL 66
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134
+ PG +PLGLA+D N + + E+ NGR AM+ + G+ + T +G
Sbjct: 67 DGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIG 119
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 105/165 (63%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M GVAG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 110 MLGVAGAIAPEILGKLGLIPPETALP-WFQTGVIPPAGTYSYWADPYTLFVLEMALMGFA 168
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F G E L G +P YPGGP+ NPLG KD R+ +E KLKE
Sbjct: 169 EHRRFQDWAKPGSMGKQ-YFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKE 227
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 228 VKNGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 100/156 (64%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLLPEVFTKIGIINVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KE+ NGRLAM+A
Sbjct: 161 NPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAPTL----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 214 FLGFVIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 249
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N + + E+ NGR AM+ + G+ + T +G I+
Sbjct: 70 PGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 121
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 99/157 (63%), Gaps = 8/157 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKQEY-FASSSTLFVIEFILFHYVEIRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F L E GYPGG + NPL A + E K KEI NGRLAM+A
Sbjct: 161 NPGSVNQDPIFKSYR--LPPNEVGYPGG-IFNPLNFAPSL----EAKEKEIANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LG +Q ++T GP DN+L+HLSDPWH TIIQTL++
Sbjct: 214 FLGFLIQHNLTGKGPFDNLLQHLSDPWHNTIIQTLSS 250
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 66 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 125
K+G + A+ + L PG +PLGLA+D N + + E++NGR AM+ + G+
Sbjct: 50 AKKGEWLPGLASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGML 109
Query: 126 VQASVTHVGPID 137
+ T +G I+
Sbjct: 110 LPEVFTKIGIIN 121
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 8/157 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P+WY+AG VE+ FA TLF+++ +L + E +R+ D
Sbjct: 101 MLGVAGMLVPEVLTKIGLINAPLWYDAGKVEY-FAPASTLFVIEFILFHYVEIRRWQDIK 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS +++ F + L + GYPGG + NPL + +E+K KEI NGRLAM+A
Sbjct: 160 YPGSVSQDPFFKSYK--LPPGDVGYPGG-IFNPLKFPAN----QEYKEKEIANGRLAMLA 212
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LG+ VQ+ +T GP +N+L HL+DPWH TI+QTLAN
Sbjct: 213 FLGMLVQSKLTGAGPFENLLTHLADPWHTTIVQTLAN 249
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 78 LEGL-EPGYPGGPL-----LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131
L GL P Y G L +PLGLA+D + E++NGR AM+ + G+ V +T
Sbjct: 55 LPGLPSPAYLNGSLAGDNGFDPLGLAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLT 114
Query: 132 HVGPID 137
+G I+
Sbjct: 115 KIGLIN 120
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPGG + NPL A E K KE+ NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KNYSLPPNEVGYPGG-IFNPLNFAP----TEEAKEKELANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+H+SDPWH TIIQTL
Sbjct: 215 FLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTL 249
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAM 118
Y S + K+G + ++ L+ PG +PLGLA+D N + + E+ N R AM
Sbjct: 44 YRSFKVEAKKGEWLPGLSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAM 103
Query: 119 VAMLGIFVQASVTHVGPID 137
+ + G+ + T +G I+
Sbjct: 104 LGVAGMLLPEVFTKIGIIN 122
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 23 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 81
V+ AG + +A + TLF+ ++ LMGFAE +R+ D+ PGS K+ F GLE L G
Sbjct: 142 VFPPAGTYNY-WADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSG 199
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
EP YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FV+A VT VGP N+L+
Sbjct: 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGVGPYQNLLD 259
Query: 142 HLSDPWHKTIIQTL 155
HL+DP H I+ +L
Sbjct: 260 HLADPVHNNILTSL 273
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Query: 3 GVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISP 62
GVAG+L ++L G+ +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +P
Sbjct: 105 GVAGMLLPEVLTNIGLINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNP 163
Query: 63 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 122
GS ++ F + +L E GYPGG + NPL A E K +E+ NGRLAM+A L
Sbjct: 164 GSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TEEAKERELANGRLAMLAFL 216
Query: 123 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
G VQ +VT GP DN+L+HLSDPWH TI+QTL+
Sbjct: 217 GFIVQHNVTGKGPFDNLLQHLSDPWHNTIVQTLS 250
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 97/155 (62%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 100 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 158
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPGG + NPL A E K KE+ NGRLAM+A
Sbjct: 159 NPGSVNQDPIF--KNYSLPPNEVGYPGG-IFNPLNFAP----TEEAKEKELANGRLAMLA 211
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+H+SDPWH TIIQTL
Sbjct: 212 FLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTL 246
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 26 EAGAVEFKFASTRTLFIV-QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG 84
+A A F+ ++++ F+ +G + + M S + K+G + ++ L+
Sbjct: 7 QASAAVFRPCASKSRFLTGSSGKLGREVSVKPMTSSSFKVEAKKGEWLPGLSSPSYLDGS 66
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N + + E+ N R AM+ + G+ + T +G I+
Sbjct: 67 LPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 98/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTQIGIINVPKWYDAGKQEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A E K KE+ NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAP----TAEAKEKELANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+HLSDPWH TIIQT
Sbjct: 215 FLGFIVQHNVTGKGPFDNLLQHLSDPWHNTIIQTF 249
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 65 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 124
+ K+G + A+ L PG +PL LA+D N + + E+ NGR AM+ + G+
Sbjct: 50 EAKKGEWLPGLASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGM 109
Query: 125 FVQASVTHVGPID 137
+ T +G I+
Sbjct: 110 LLPEVFTQIGIIN 122
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/151 (49%), Positives = 96/151 (63%), Gaps = 5/151 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G AGI+ T + G+ P WY+AG VE TL I QL LMG+AETKR+ D
Sbjct: 80 MLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLLITQLYLMGWAETKRWYD 138
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLA 117
+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KEIKNGRLA
Sbjct: 139 FKNPGSQG-DGSFLGFTDEFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGRLA 197
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
M+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 198 MIACLGFAAQYAATGKGPLDNLADHLADPNH 228
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 97/157 (61%), Gaps = 8/157 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 52 MLGVAGMLLPEVFTNIGILNVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIK 110
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS + F +L E GYPGG + NPL A E K KEI NGRLAM+A
Sbjct: 111 NPGSVNQXPIF--KNYSLPPNEVGYPGG-IFNPLNFAP----TAEAKEKEIANGRLAMLA 163
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LG VQ +V GP DN+L+HLSDPWH TI+QTL N
Sbjct: 164 FLGFIVQHNVVGKGPFDNLLQHLSDPWHNTIVQTLGN 200
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 104/165 (63%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF+ ++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPPETALP-WFQTGVIPPAGTYDYWADPYTLFVFEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLKE
Sbjct: 167 EHRRFQDWAKPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP + ++ +L
Sbjct: 226 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 101/165 (61%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W+ G + +A TLF+ ++ LMGFA
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALP-WFRTGVIPPAGTYSYWADPYTLFVFEMALMGFA 167
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F G E L G EP YPGGPL NPLG KD ++ ++ KLKE
Sbjct: 168 EHRRFQDWAKPGSMGKQ-YFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKE 226
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP H I+ +L
Sbjct: 227 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 105/165 (63%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M GVAG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 110 MLGVAGAIAPEILGKLGLIPPETALP-WFQTGVIPPAGTYSYWADPYTLFVLEMALMGFA 168
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F G E L G +P YPGGP+ NPLG KD ++ +E KLKE
Sbjct: 169 EHRRFQDWAKPGSMGKQ-YFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKE 227
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 228 VKNGRLAMLAILGFFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F + +L E GYPGG + NPL A I E K KE+ NGRLAM+A
Sbjct: 161 NPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAPTI----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP DN+L+H+SDPWH TI+QT +
Sbjct: 214 FLGFVIQHNVTGKGPFDNLLQHISDPWHNTIVQTFS 249
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + T +G I+
Sbjct: 70 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 121
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 100/158 (63%), Gaps = 8/158 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LG +Q +VT GP DN+L+H+SDPWH TI+QTL +
Sbjct: 215 FLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 252
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 78 LEGL-EPGY-----PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131
L GL PGY PG +PLGLA+D N R + E+ NGR AM+ + G+ + T
Sbjct: 57 LPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT 116
Query: 132 HVGPID 137
+G I+
Sbjct: 117 SIGIIN 122
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 97/155 (62%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A
Sbjct: 162 NPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+H+SDPWH TI+QT
Sbjct: 215 FLGFIVQHNVTGKGPFDNLLQHISDPWHNTIVQTF 249
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + T +G I+
Sbjct: 71 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
>gi|149242543|pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 19 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 77
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A
Sbjct: 78 NPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLA 130
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG +Q +VT GP DN+L+H+SDPWH TI+QTL
Sbjct: 131 FLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYSYWADNYTLFVLEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE G EP YPGGP NPLG K+ ++ +E KLKE
Sbjct: 167 EHRRLQDWYNPGSMGKQ-YFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+A+LG FVQ VT VGP N+L+HL+DP + ++ +L
Sbjct: 226 IKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 167 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++ G+ LP W++ G + +A TLF+ ++ LMGFA
Sbjct: 108 MLGAAGAIAPEIFGSLGLIPPETALP-WFKTGVIPPAGTYNYWADPYTLFVFEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F GLE L G +P YPGGPL NPLG KD ++ +E KLKE
Sbjct: 167 EHRRFQDWAKPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+A+LG F+Q VT VGP N+L+HLSDP + ++ +L
Sbjct: 226 IKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLSDPVNNNVLTSL 270
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 167 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 101/156 (64%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D
Sbjct: 105 MLGVAGMLLPEVFTKLGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIK 163
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A
Sbjct: 164 NPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLA 216
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP +N+L+HLSDPWH TI+QTL+
Sbjct: 217 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 252
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 5/151 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AETKR+ D
Sbjct: 80 MLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYD 138
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLA 117
+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+KNGRLA
Sbjct: 139 FKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLA 197
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
M+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 198 MIACLGFAAQYAATGKGPLDNLADHLADPNH 228
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPPETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 167 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 96/151 (63%), Gaps = 5/151 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AETKR+ D
Sbjct: 80 MLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYD 138
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLA 117
+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+KNGRLA
Sbjct: 139 FKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLA 197
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
M+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 198 MIACLGFAAQYAATGKGPLDNLADHLADPNH 228
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++ G+ LP W++ G + +A TLF+ ++ LMGFA
Sbjct: 34 MLGAAGAIAPEIFGKLGLIPAETALP-WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFA 92
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 93 EHRRFQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKE 151
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 152 IKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 196
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D
Sbjct: 104 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIK 162
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KE+ NGRLAM+A
Sbjct: 163 NPGSVNQDPIF--KQYSLPPNEVGYPGG-IFNPLNFAPTV----EAKEKELANGRLAMLA 215
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP +N+L+HLSDPWH TI+QTL+
Sbjct: 216 FLGFVIQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 251
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 54 KRYMDYISPGSQTKEGSFFGLEAA----LEGL-EPGYPGGPL-----LNPLGLAKDIRNA 103
R + + S GS +K SF +EA L GL PGY G L +PLGLA+D N
Sbjct: 31 NRELSFKSIGSSSKTASF-KVEAKKGEWLPGLASPGYLNGSLAGDNGFDPLGLAEDPENL 89
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + E+ NGR AM+ + G+ + T +G I+
Sbjct: 90 KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G ++P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLIPEVLTSFGFIDVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F +L E GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 161 YPGSVNQDPVF--KNYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TIIQT
Sbjct: 214 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTF 248
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGY-----PGGPLLNPLGLAKDIR 101
+ R + PGS F +EA E L P Y PG +PLGLA+D
Sbjct: 26 SSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPD 85
Query: 102 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + + E+ NGR AM+ + G+ + +T G ID
Sbjct: 86 SLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G ++P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLIPEVLTSFGFIDVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F +L E GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 161 YPGSVNQDPVF--KNYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TIIQT
Sbjct: 214 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIIQTF 248
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGY-----PGGPLLNPLGLAKDIR 101
+ R + PGS F +EA E L P Y PG +PLGLA+D
Sbjct: 26 SSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPTYLNGSLPGDNGFDPLGLAEDPE 85
Query: 102 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + + E+ NGR AM+ + G+ + +T G ID
Sbjct: 86 SLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 100/155 (64%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG++ ++L GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMVLPEVLTNYGIINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L + GYPGG + NPL + ARE KEI NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KQYSLPPNDVGYPGG-IFNPLNFEPTLE-ARE---KEIANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN ++H+SDPWH TI+QTL
Sbjct: 215 FLGFIVQHNVTGKGPFDNFMQHISDPWHNTIVQTL 249
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
L+ PG +PLGLA+D N R + E+ NGR AM+ + G+ + +T+ G I+
Sbjct: 66 LDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIIN 122
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+V+ +L + E +R+ D
Sbjct: 99 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVVEFILFXYVEIRRWQDIK 157
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 158 NPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 210
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 211 FLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 91 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+PLGLA+D N R + E+ NGR AM+ + G+ + +T G I+
Sbjct: 72 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 133 bits (334), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+V+ +L + E +R+ D
Sbjct: 99 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVVEFILFHYVEIRRWQDIK 157
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 158 NPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 210
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 211 FLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 91 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+PLGLA+D N R + E+ NGR AM+ + G+ + +T G I+
Sbjct: 72 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 103/165 (62%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 53 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 111
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 112 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 170
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 171 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 215
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W++ G + +A TLF+ +L LMGFA
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALP-WFKTGVIPPAGTYDYWADPYTLFVFELALMGFA 167
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R+ D+ PG +K+ F G E EG P YPGGPL NPLG KD ++ ++ KLKE
Sbjct: 168 EHRRFQDFQKPGCLSKQ-YFLGFEKYFEGSGNPIYPGGPLFNPLGFGKDEKSLKDLKLKE 226
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQA VT VGP N+L+HLSDP + I+ +L
Sbjct: 227 VKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVNNNILTSL 271
>gi|361067651|gb|AEW08137.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160502|gb|AFG62791.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160504|gb|AFG62792.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160506|gb|AFG62793.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
gi|383160508|gb|AFG62794.1| Pinus taeda anonymous locus 2_784_02 genomic sequence
Length = 132
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/130 (52%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 27 AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGY 85
AG + +A TLF++++ LMGFAE +R DY +PGS K+ F GLE L G P Y
Sbjct: 1 AGTYNY-WADPFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQ-YFLGLEKYLGGSGNPAY 58
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 145
PGGPL NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+HL+D
Sbjct: 59 PGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLAD 118
Query: 146 PWHKTIIQTL 155
P++ I+ L
Sbjct: 119 PFNNNILTNL 128
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 23 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 81
V+ AG + +A TLF+ ++ LMGFAE +R+ D+ +PGS K+ F GLE L G
Sbjct: 139 VFPPAGTYNY-WADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ-YFLGLEKYLGGSG 196
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
+P YPGGPL NPLG KD ++ ++ KLKE+KNGRLAM+A+LG F Q VT VGP+ N+L+
Sbjct: 197 DPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLD 256
Query: 142 HLSDPWHKTIIQTL 155
HL+DP + II +L
Sbjct: 257 HLADPVNNNIITSL 270
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W+ G + +A TLF+ ++ LMGFA
Sbjct: 109 MLGAVGAIAPEILGKAGLIPPETALP-WFRTGVIPPAGTYSYWADPYTLFVFEMALMGFA 167
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ PGS K+ F G E L G EP YPGGPL NPLG KD ++ ++ KLKE
Sbjct: 168 EHRRLQDWAKPGSMGKQ-YFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKE 226
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP H I+ +L
Sbjct: 227 VKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 132 bits (332), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F + +L E GYPGG + NPL A I E K KE+ NGRLAM+A
Sbjct: 161 NPGCVNQDPIF--KQYSLPPNECGYPGG-IFNPLNFAPTI----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP +N+L+H+SDPWH TI+QT +
Sbjct: 214 FLGFVIQHNVTGKGPFENLLQHISDPWHNTIVQTFS 249
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + T +G I+
Sbjct: 70 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 121
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 98/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+ ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 102 MLGVAGMXIPEVLTSIGLINVPKWYDAGKVEY-FASSXTLFVIEFILFHYVELRRWQDIK 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ +L E GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 161 YPGSVNQDP--IXKSYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP DN+L+HLSDPWH TIIQTL
Sbjct: 214 FLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTL 248
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL----EPGY-----PGGPLLNPLGLAKDIR 101
+ R + PGS F +EA E L P Y PG +PLGLA+D
Sbjct: 26 SSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGXDPLGLAEDPE 85
Query: 102 NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + + E+ NGR AM+ + G+ + +T +G I+
Sbjct: 86 SLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 101/165 (61%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 121 MLGAVGAIAPEILGKLGLIPQETALP-WFQTGVIPPAGTYNYWADPFTLFVLEMALMGFA 179
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R DY +PGS K+ F GLE L G P YPGGPL NPLG KD ++ +E KLKE
Sbjct: 180 EHRRLQDYRNPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPLFNPLGFGKDEKSMKELKLKE 238
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP H + +
Sbjct: 239 VKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVHNNFLTNM 283
>gi|37780998|gb|AAP35043.1| chlorophyll a/b binding protein, partial [Vitis vinifera]
Length = 166
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 93/134 (69%), Gaps = 3/134 (2%)
Query: 23 VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL- 81
V+ AG + +A TLF+ ++ LMGFAE +R+ D+ +PGS K+ F GLE L G
Sbjct: 31 VFPPAGTYNY-WADPYTLFVFEMALMGFAEHRRFQDWANPGSMGKQ-YFLGLEKYLGGSG 88
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
+P YPGGPL NPLG KD ++ ++ KLKE+KNGRLAM+A+LG F Q VT VGP+ N+L+
Sbjct: 89 DPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGVGPLQNLLD 148
Query: 142 HLSDPWHKTIIQTL 155
HL+DP + II +L
Sbjct: 149 HLADPVNNNIITSL 162
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 155 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
L +Q +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 FLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 76 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135
A L+G PG G +PLGLA+D N R + E+ NGR AM+ + G+ + +T G
Sbjct: 57 AYLDGSLPGDNG---FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 136 ID 137
I+
Sbjct: 114 IN 115
>gi|194701622|gb|ACF84895.1| unknown [Zea mays]
Length = 149
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 1 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 59
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 60 NPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 112
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
L +Q +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 113 FLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 148
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 132 bits (331), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/151 (47%), Positives = 95/151 (62%), Gaps = 5/151 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AETKR+ D
Sbjct: 80 MLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLIVIQFYLMGWAETKRWYD 138
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLA 117
+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D E+K KE+KNGRLA
Sbjct: 139 FKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYAEYKQKEVKNGRLA 197
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
M+A LG Q + T GP+DN+ +HL+DP H
Sbjct: 198 MIACLGFAAQYAATGKGPLDNLSDHLADPNH 228
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 98/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 104 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 162
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 163 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 215
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
L +Q +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 216 FLAFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTLS 251
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 76 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135
A L+G PG G +PLGLA+D N R + E+ NGR AM+ + G+ + +T G
Sbjct: 65 AYLDGSLPGDNG---FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL 121
Query: 136 ID 137
I+
Sbjct: 122 IN 123
>gi|11762172|gb|AAG40364.1|AF325012_1 AT3g47470 [Arabidopsis thaliana]
Length = 148
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D
Sbjct: 1 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIK 59
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A +E K KE+ NGRLAM+A
Sbjct: 60 NPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLA 112
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TI+QT
Sbjct: 113 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 147
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 131 bits (330), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY+AG ++ FAS+ TLF+++ +L + E +R+ D
Sbjct: 104 MLGVAGMLLPEVFTKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIK 162
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A +E K KE+ NGRLAM+A
Sbjct: 163 NPGSVNQDPIF--KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLA 215
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TI+QT
Sbjct: 216 FLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 54 KRYMDYISPGSQTKEGSFFGLEAA----LEGL-EPGYPGGPL-----LNPLGLAKDIRNA 103
R + + S GS K SF +EA L GL P Y G L +PLGLA+D N
Sbjct: 31 NRDLSFTSIGSSAKTSSF-KVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL 89
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+ + E+ NGR AM+ + G+ + T +G I+
Sbjct: 90 KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 97/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ + P WY+AG + FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYPG + NPL + E K KE+ NGRLAM+A
Sbjct: 155 NPGCVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 FLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + +T +G ID
Sbjct: 64 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 97/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ + P WY+AG + FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYPG + NPL + E K KE+ NGRLAM+A
Sbjct: 155 NPGCVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 FLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + +T +G ID
Sbjct: 64 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 97/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+A E+ FAS+ TLF+V+ +L + E +R+ D
Sbjct: 99 MLGVAGMLIPEVLTKAGLINAPQWYDASKSEY-FASSSTLFVVEFILFHYVEIRRWQDIK 157
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 158 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 210
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG +Q +VT GP DN+L+HLSDPWH TIIQT +
Sbjct: 211 FLGFLIQHNVTGKGPFDNLLQHLSDPWHNTIIQTFS 246
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 91 LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
+PLGLA+D N R + E+ NGR AM+ + G+ + +T G I+
Sbjct: 72 FDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFAST--RTLFIVQLLLMGFAETKRYMD 58
M GVAGIL LL G +PVW+EAG V +S L +V+ L MGF ETKR+ D
Sbjct: 49 MMGVAGILVPALLTKLGAMNVPVWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYD 108
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLA 117
SPGSQ +GS FG+ +G GYPGG +P G +K + + ++KEI NGRLA
Sbjct: 109 IKSPGSQ-GDGSIFGITDDFKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLA 167
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
MVAM+G + Q + T GP+DN+ +H++DP H T
Sbjct: 168 MVAMVGFWAQYAATGKGPVDNLFDHIADPGHVTF 201
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 167 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+ P + ++ +L
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAGPVNNNVLTSL 270
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 102/165 (61%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELP-----VWYEAGAVEFKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP V AG + +A TLF++++ LMGFA
Sbjct: 108 MLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPAGTYTY-WADNYTLFVLEMALMGFA 166
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 167 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 225
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 226 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 8/161 (4%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKR 55
+ +A +F L + LP W++ G + +A TLF+ ++ LMGFAE +R
Sbjct: 38 VGAIAPEIFGKLGLIPAETALP-WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRR 96
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
D+ +PGS K+ F GLE G +P YPGGP NPLG KD ++ +E KLKEIKNG
Sbjct: 97 LQDWYNPGSMGKQ-YFLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNG 155
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
RLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 156 RLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 196
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 100/165 (60%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++ G+ LP W++ G + +A TLF+ ++ LMGFA
Sbjct: 34 MLGAAGAIAPEIFGKLGLIPAETALP-WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFA 92
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE G +P YPGGP NPLG KD ++ +E KLKE
Sbjct: 93 EHRRLQDWYNPGSMGKQ-YFLGLEKGFAGSGDPAYPGGPFFNPLGFGKDEKSMKELKLKE 151
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+A+LG F+Q VT VGP N+L+HL+DP ++ +L
Sbjct: 152 IKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVSNNVLTSL 196
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 97/155 (62%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 162 NPGSVNQDPIF--KQYSLPQHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TII T+
Sbjct: 215 FLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTI 249
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 65 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 124
+ K+G + A+ L PG +PLGLA+D N R + E+ NGR AM+ + G+
Sbjct: 50 EAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGM 109
Query: 125 FVQASVTHVGPID 137
+ T +G I+
Sbjct: 110 LLPEVFTKIGIIN 122
>gi|255642841|gb|ACU22606.1| unknown [Glycine max]
Length = 150
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 97/155 (62%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 1 MLGVAGMLLPEVFTKIGIINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 59
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 60 NPGSVNQDPIF--KQYSLPQHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 112
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TII T+
Sbjct: 113 FLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTI 147
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ + P WY+AG + FAS+ TLF+++ +L + E +++ D
Sbjct: 96 MLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FASSNTLFVIEFILFHYVEIRQWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F L E GYPG + NPL + E K KE+ NGRLAM+A
Sbjct: 155 NPGCVNQDPIFKSYR--LPSDECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 FLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + +T +G ID
Sbjct: 64 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 97/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L +LL G+ P WY+AG E FAS+ TLF+V+ +L + E +R+ D
Sbjct: 98 MLGVAGMLIPELLTKAGLLSAPEWYDAGK-ETYFASSSTLFVVEFILFHYVEIRRWQDIK 156
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L + GYPG + NPL A + N K KE+ NGRLAM+A
Sbjct: 157 NPGSVNQDPIF--KSYSLPDHDCGYPGS-VFNPLNFAPTLEN----KEKELANGRLAMLA 209
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP +N+++HL+DPWH TIIQT +
Sbjct: 210 FLGFLVQHNVTGKGPFENLMQHLADPWHNTIIQTFS 245
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 93/157 (59%), Gaps = 4/157 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG E+ F T TLF+V+L+L+G+AE +R+ D I
Sbjct: 98 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFVVELILIGWAEGRRWADII 156
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 157 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAML 214
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A++G + QA T GPIDN+ HL+DP H TI + A
Sbjct: 215 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFA 251
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 96/156 (61%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ + P WY+AG + FAS+ TLF+++ +L E +R+ D
Sbjct: 96 MLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FASSSTLFVIEFILFHSVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYPG + NPL + E K KE+ NGRLAM+A
Sbjct: 155 NPGCVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 FLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + +T +G ID
Sbjct: 64 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 7/139 (5%)
Query: 23 VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 77
W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE
Sbjct: 135 AWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKG 193
Query: 78 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
G P YPGGP NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP
Sbjct: 194 FGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPY 253
Query: 137 DNILEHLSDPWHKTIIQTL 155
N+L+H++DP + ++ +L
Sbjct: 254 QNLLDHVADPVNNNVLTSL 272
>gi|149392118|gb|ABR25925.1| chloroplast chlorophyll a-b binding protein [Oryza sativa Indica
Group]
Length = 171
Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M GV G++ +LL G+ +P W++ G + +A TLF+ +L L+GFA
Sbjct: 5 MMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADPYTLFVFELALVGFA 63
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG K +E KLK
Sbjct: 64 EHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLK 122
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG VQA T VGP+ N+L+HL+DP H I+ +L
Sbjct: 123 EIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 168
>gi|427338377|gb|AFY52187.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338379|gb|AFY52188.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|427338381|gb|AFY52189.1| chlorophyll binding protein, partial [Clermontia fauriei]
gi|428230862|gb|AFY99053.1| chlorophyll binding protein, partial [Clermontia fauriei]
Length = 197
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 98/161 (60%), Gaps = 8/161 (4%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKR 55
+ +A +F L + LP W++ G + +A TLF+ ++ LMGFAE +R
Sbjct: 38 VGAIAPEIFGKLGLIPAETALP-WFQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRR 96
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
D+ +PGS K+ F GLE G +P YPGGP NPLG KD + +E KLKEIKNG
Sbjct: 97 LQDWYNPGSMGKQ-YFLGLEKGFAGSGDPAYPGGPFFNPLGFGKDETSMKELKLKEIKNG 155
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
RLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 156 RLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 196
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M GV G++ +LL G+ +P W++ G + +A TLF+ +L L+GFA
Sbjct: 103 MMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADPYTLFVFELALVGFA 161
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG K +E KLK
Sbjct: 162 EHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLK 220
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG VQA T VGP+ N+L+HL+DP H I+ +L
Sbjct: 221 EIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 266
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 129 bits (323), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 92/157 (58%), Gaps = 4/157 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R+ D I
Sbjct: 100 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELILIGWAEGRRWADII 158
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 159 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRLAML 216
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A++G + QA T GPIDN+ HL+DP H TI + A
Sbjct: 217 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAFA 253
>gi|149392115|gb|ABR25924.1| chloroplast chlorophyll a-b binding protein 8 [Oryza sativa Indica
Group]
Length = 191
Score = 128 bits (322), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 102/166 (61%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M GV G++ +LL G+ +P W++ G + +A TLF+ +L L+GFA
Sbjct: 25 MMGVVGMVAPELLGKLGLVPAETAIP-WFQTGVIPPAGTYTYWADPYTLFVFELALVGFA 83
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R+ D+ +PGS K+ F GLE L G EP YPGGPL NPLG K +E KLK
Sbjct: 84 EHRRFQDWYTPGSMGKQ-YFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKSEAEMKELKLK 142
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG VQA T VGP+ N+L+HL+DP H I+ +L
Sbjct: 143 EIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 188
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 128 bits (322), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 95/156 (60%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L +LL G+ P WY+AG + FAS+ TLF+V+ +L + E +R+ D
Sbjct: 96 MLGVAGMLTPELLTKIGLINAPEWYDAGKSTY-FASSSTLFVVEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PG ++ F +L E GYPG + NPL A + E K KEI NGRLAM+A
Sbjct: 155 EPGCVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKEIANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP+DN+ +HLSDPWH TIIQT +
Sbjct: 208 YLGFSVQHAVTGKGPLDNLFQHLSDPWHNTIIQTFS 243
Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 76 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135
A L+G PG G +PLGLA+D N R + E+ NGR AM+ + G+ +T +G
Sbjct: 57 AYLDGKLPGDNG---FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGL 113
Query: 136 ID 137
I+
Sbjct: 114 IN 115
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 97/153 (63%), Gaps = 11/153 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAV------EFKFASTRTLFIVQLLLMGFAETK 54
M VAGILF + G+ +P WY+AG+V F FA+ L +Q++L G+ ETK
Sbjct: 95 MTAVAGILFPAVATKAGVVNIPQWYDAGSVWVQNNPNFPFAA---LLFIQIILTGWVETK 151
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKN 113
R++D+ +PGSQ +GSF G+ +G+ GYPGG L +P GL++ ++++ EIKN
Sbjct: 152 RWLDFKNPGSQA-DGSFLGVTDDFKGVANGYPGGKLFDPFGLSRGSEGQLQKYQENEIKN 210
Query: 114 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
GRLAMVA LG Q + T GPIDN+ +HL++P
Sbjct: 211 GRLAMVAFLGFIAQHAATGKGPIDNLADHLANP 243
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 89/130 (68%), Gaps = 3/130 (2%)
Query: 27 AGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGY 85
AG ++ +A TLF++++ LMGFAE +R DY PGS +K+ F G E L G P Y
Sbjct: 158 AGTYDY-WADPFTLFVLEMALMGFAEHRRLQDYRYPGSMSKQ-YFLGFEKYLGGSGNPSY 215
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 145
PGGPL NPLG KD ++ +E KLKE+KNGRLAM+A++G F+Q VT VGP N+L+HL+D
Sbjct: 216 PGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFIQGLVTGVGPFQNLLDHLAD 275
Query: 146 PWHKTIIQTL 155
P + ++ L
Sbjct: 276 PVNNNLLTNL 285
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 93/154 (60%), Gaps = 5/154 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P W AG ++ FA TLF+++L+L +AE +R+ D +
Sbjct: 52 MLGAAGIFIPEALTKAGILNTPSWNVAGDQQY-FADPTTLFVIELILFAWAEGRRWADIV 110
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLA--KDIRNAREWKLKEIKNGRLAM 118
+PG + F L G + GYPGG +PLG KD + +E + KEIKNGRLAM
Sbjct: 111 NPGCVNVDPVF--PNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAM 168
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
+A+LG VQA+ TH GPIDN+L HL+DP H TI
Sbjct: 169 LAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIF 202
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLIPEVLTKAGLLNAPEWYDAGK-ETYFASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + N K KE+ NGRLAM+A
Sbjct: 155 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTLEN----KEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP +N+ +HL+DPWH TIIQT++
Sbjct: 208 FLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 243
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 99/158 (62%), Gaps = 9/158 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KEI NGRL M+A
Sbjct: 162 NPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRL-MLA 213
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LG +Q +VT GP DN+L+H+SDPWH TI+QTL +
Sbjct: 214 FLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 251
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 78 LEGL-EPGY-----PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131
L GL PGY PG +PLGLA+D N R + E+ NGR AM+ + G+ + T
Sbjct: 57 LPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFT 116
Query: 132 HVGPID 137
+G I+
Sbjct: 117 SIGIIN 122
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 96/155 (61%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTKFGIINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F + +L E GYPG + NPL A + E K KE+ NGRLAM+A
Sbjct: 162 NPGCVNQDPIF--KQYSLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGRLAMLA 214
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LG VQ +VT GP +N+L+HLSDPWH TII T+
Sbjct: 215 FLGFIVQHNVTGKGPFENLLQHLSDPWHNTIINTI 249
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 65 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 124
+ K+G + A+ L PG +PLGLA+D N R + E+ NGR AM+ + G+
Sbjct: 50 EAKKGEWLPGLASPTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGM 109
Query: 125 FVQASVTHVGPID 137
+ T G I+
Sbjct: 110 LLPEVFTKFGIIN 122
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 99/165 (60%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G G + ++ GI LP W++ G + +A + TLF+ + LMGFA
Sbjct: 102 MLGAVGAIAPEIFGKMGIIPPETALP-WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFA 160
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G +P YPGGPL NPLG K + E KLKE
Sbjct: 161 EHRRLQDWYNPGSMGKQ-YFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKE 219
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 220 IKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 264
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG + FA TLFIV+LL MG+AE +R+ D +
Sbjct: 111 MLGAAGIFIPELLTKIGILNTPSWYTAGEQTY-FADQTTLFIVELLFMGWAEGRRWADIL 169
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG A +E + KEIKNGRLAM+
Sbjct: 170 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAML 227
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H T+ L
Sbjct: 228 AVMGAWFQAVYTGTGPIDNLFAHLADPGHATVFAAL 263
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 97/156 (62%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E FAS+ TLF+++ +L + E +R+ D
Sbjct: 79 MLGVAGMLIPEVLTKAGLLNAPEWYDAGK-ETYFASSSTLFVIEFILFHYVEIRRWQDIK 137
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + N K KE+ NGRLAM+A
Sbjct: 138 NPGSVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFAPTLEN----KEKELANGRLAMLA 190
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP +N+ +HL+DPWH TIIQT++
Sbjct: 191 FLGFLVQHNVTGKGPFENLQQHLADPWHNTIIQTIS 226
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAE 52
M G AG + ++ G+ +E + W++ G + ++ + A TLF++++ LMGFAE
Sbjct: 114 MLGAAGAIAPEIFGKIGLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAE 173
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R DY PGS K+ F G E L G +P YPGGPL N LG +D ++ ++ K+KE+
Sbjct: 174 HRRAQDYYKPGSMGKQ-YFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEV 232
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F+QA T VGP N+L+HLSDP + ++ L
Sbjct: 233 KNGRLAMLAVLGYFIQAIFTGVGPFQNLLDHLSDPANNNVLTNL 276
>gi|194689644|gb|ACF78906.1| unknown [Zea mays]
Length = 156
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 59
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 60 KPGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 117
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 118 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 153
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 115 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 174 KPGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 232 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 267
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L G+ P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 105 MLGAAGIFIPEFLTKIGVLNTPFWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 163
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 164 KPGSVNTDPIF--PSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 221
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 222 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 257
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 99/165 (60%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G G + ++ GI LP W++ G + +A + TLF+ + LMGFA
Sbjct: 44 MLGAVGAIAPEIFGKMGIIPPETALP-WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFA 102
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G +P YPGGPL NPLG K + E KLKE
Sbjct: 103 EHRRLQDWYNPGSMGKQ-YFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKE 161
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+A+LG F+Q VT VGP N+L+HL+DP + ++ +L
Sbjct: 162 IKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 206
>gi|326532160|dbj|BAK01456.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 78
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/75 (78%), Positives = 64/75 (85%)
Query: 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL 140
L+PGYPGGPL NP+GLAKDI NA E KLKEIKNGRLAMVAMLG VQASVTH GPIDN+L
Sbjct: 1 LQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAGPIDNLL 60
Query: 141 EHLSDPWHKTIIQTL 155
HLSDP++K II L
Sbjct: 61 THLSDPFNKNIIHAL 75
>gi|125660620|gb|ABN49455.1| photosystem I chlorophyll a/b binding protein [Pisum sativum]
Length = 144
Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/149 (44%), Positives = 95/149 (63%), Gaps = 8/149 (5%)
Query: 7 ILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQT 66
+L ++ GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS
Sbjct: 1 MLLPEVFTSIGIINVPKWYDAGKEEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVN 59
Query: 67 KEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFV 126
++ F + +L E GYPGG + NPL A + E K KEI NGRLAM+A LG +
Sbjct: 60 QDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFII 112
Query: 127 QASVTHVGPIDNILEHLSDPWHKTIIQTL 155
Q +VT GP DN+L+H+SDPWH TI+QTL
Sbjct: 113 QHNVTGKGPFDNLLQHISDPWHNTIVQTL 141
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG + FA T TLFIV+L+L+G+AE +R+ D I
Sbjct: 103 MLGAAGIFIPELLTKIGILNTPSWYTAGEQTY-FADTTTLFIVELILIGWAEGRRWADII 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 162 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAML 219
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI +
Sbjct: 220 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFRAF 255
>gi|226496924|ref|NP_001148598.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|195620680|gb|ACG32170.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 151
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 89/138 (64%), Gaps = 7/138 (5%)
Query: 24 WYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAL 78
W++ G + +A + TLF+ + LMGFAE +R D+ +PGS K+ F GLE L
Sbjct: 12 WFKTGVIPPAGTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKFL 70
Query: 79 EGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
G +P YPGGPL NPLG K + E KLKEIKNGRLAM+A+LG F+Q VT VGP
Sbjct: 71 AGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQ 130
Query: 138 NILEHLSDPWHKTIIQTL 155
N+L+HL+DP + ++ +L
Sbjct: 131 NLLDHLADPVNNNVLTSL 148
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 108 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 166
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 167 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAML 224
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI Q
Sbjct: 225 AVMGAWFQAEYTGTGPIDNLFAHLADPGHATIFQAF 260
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG +E+ F TLF+V+++ +G+AE +R+ D I
Sbjct: 123 MLGAAGIFIPELLTKLGILNTPSWYTAGELEY-FTDKTTLFVVEMIFLGWAEGRRWADII 181
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 182 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 239
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A++G + QA T GPIDN+L HL+DP H T+ ++
Sbjct: 240 AVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 277
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 125 bits (315), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAE 52
M G AG + ++L G+ +E + W+++G + + + A TLF++++ LMGFAE
Sbjct: 59 MLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAE 118
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R DY PGS K+ F GLE L G P YPGGP+ N LG K+ + +E K+KE+
Sbjct: 119 HRRAQDYYKPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEV 177
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F QA T VGP N+L+HL+DP H ++ L
Sbjct: 178 KNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNL 221
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 102/164 (62%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAV----EFKF-ASTRTLFIVQLLLMGFAE 52
M G AG + ++L G+ +E + W+++G + + + A TLF++++ LMGFAE
Sbjct: 59 MLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAE 118
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R DY PGS K+ F GLE L G P YPGGP+ N LG K+ + +E K+KE+
Sbjct: 119 HRRAQDYYKPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEV 177
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F QA T VGP N+L+HL+DP H ++ L
Sbjct: 178 KNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNL 221
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 95/156 (60%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI P+WY+AG + FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLLPEVLTKIGIINAPLWYDAGKSTY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYPG + NPL + E K KE+ NGRLAM+A
Sbjct: 155 NPGCVNQDPIFKNY--SLPPHECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
L VQ +T GP +N+L+HLSDPWH TIIQTL+
Sbjct: 208 FLAFMVQHGITGKGPFENLLQHLSDPWHNTIIQTLS 243
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ N R AM+ + G+ + +T +G I+
Sbjct: 64 PGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG E+ F TLF+V+++ +G+AE +R+ D I
Sbjct: 123 MLGAAGIFIPELLTKLGILNTPSWYTAGEQEY-FTDKTTLFVVEMIFLGWAEGRRWADII 181
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 182 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 239
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A++G + QA T GPIDN+L HL+DP H T+ ++
Sbjct: 240 AVMGAWFQAEYTGTGPIDNLLAHLADPGHATVFAAFSS 277
>gi|161376574|gb|ABX71549.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376576|gb|ABX71550.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376578|gb|ABX71551.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376580|gb|ABX71552.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376582|gb|ABX71553.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376584|gb|ABX71554.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376586|gb|ABX71555.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376588|gb|ABX71556.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376590|gb|ABX71557.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376592|gb|ABX71558.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376594|gb|ABX71559.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376596|gb|ABX71560.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376598|gb|ABX71561.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376600|gb|ABX71562.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376602|gb|ABX71563.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376604|gb|ABX71564.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376606|gb|ABX71565.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376608|gb|ABX71566.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
gi|161376610|gb|ABX71567.1| chloroplast chlorophyll a/b binding protein [Helianthus annuus]
Length = 135
Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/140 (47%), Positives = 90/140 (64%), Gaps = 8/140 (5%)
Query: 17 GIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA 76
GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D +PGS ++ F
Sbjct: 2 GILNVPKWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF--KNY 58
Query: 77 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
+L E GYPGG + NPL A E K KE+ NGRLAM+A LG VQ +VT GP
Sbjct: 59 SLPPNEVGYPGG-IFNPLNFAP----TAEAKEKELANGRLAMLAFLGFIVQHNVTGKGPF 113
Query: 137 DNILEHLSDPWHKTIIQTLA 156
DN+L+HLSDPWH TI+QT++
Sbjct: 114 DNLLQHLSDPWHNTIVQTMS 133
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 94/156 (60%), Gaps = 8/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ + P WY+AG + FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLLPEVLTKIGLIDAPQWYDAGKATY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYP PL + E K KE+ NGRLAM+A
Sbjct: 155 NPGCVNQDPIFKSY--SLPPHECGYPAASS-TPLNFEPTL----EAKEKELANGRLAMLA 207
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 208 FLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 243
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ + G+ + +T +G ID
Sbjct: 64 PGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 125 bits (313), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAVE-----FKFASTRTLFIVQLLLMGFAE 52
M G AG + ++L G+ +E + W+++G + +A TLF++++ LMGFAE
Sbjct: 77 MLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAE 136
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R DY PGS K+ F GLE L G P YPGGP+ N LG K+ + +E K+KE+
Sbjct: 137 HRRAQDYYKPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEV 195
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F QA T VGP N+L+HL+DP H ++ L
Sbjct: 196 KNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLTNL 239
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +L GI P WY AG +E+ F TLF+V+++ +G+AE +R+ D +
Sbjct: 123 MLGAAGIFIPELCTKLGILNTPSWYTAGELEY-FTDKTTLFVVEMIFLGWAEGRRWADIL 181
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 182 EPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 239
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A++G + QA T GPIDN+L HL+DP H TI ++
Sbjct: 240 AVMGAWFQAEYTGTGPIDNLLAHLADPGHATIFAAFSS 277
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 92/162 (56%), Gaps = 12/162 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAV------EFKFASTRTLFIVQLLLMGFAETK 54
M GVAGI+F L G+ +P W +AG V FAS L +VQ L F E K
Sbjct: 83 MLGVAGIIFPAELTRVGLLNVPDWADAGKVYAESENAIPFAS---LLMVQFFLFNFVEIK 139
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLE-PGYPGGPLLNPLGLAKDIRNA-REWKLKEIK 112
R+ D PGSQ + GSF G E+A +G GYPGGP NPLGL + + ++K +EI+
Sbjct: 140 RWEDIKKPGSQAEAGSFLGFESAFKGSGVSGYPGGPF-NPLGLGNSSKESMDDFKWREIR 198
Query: 113 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
NGRLAM+A LG Q + T GP+DN+ +HL+DPW
Sbjct: 199 NGRLAMMAFLGFLAQHAATGKGPLDNLADHLADPWANNFCSN 240
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 93/149 (62%), Gaps = 5/149 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
MA VAGIL ++L+ G LPVWYEAG A E TL +++ F E KR+ D
Sbjct: 84 MAAVAGILIPEVLKAFGAVNLPVWYEAGKYAQESSPIPFNTLIALEIFAFNFVEIKRWQD 143
Query: 59 YISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 117
+ PGSQ +EGSF GLE +G E GYPGG + +PLGL+K KL+EIKNGRLA
Sbjct: 144 FKKPGSQGEEGSFVGLEGFFKGTGENGYPGG-VFDPLGLSKG-PGYEAMKLREIKNGRLA 201
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDP 146
M+A +G Q T GPI+N+L+HLS+P
Sbjct: 202 MLAFIGFASQYLATGKGPIENLLDHLSNP 230
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 107 MLGAAGIFIPEFLTKIGILSTPSWYTAGEQQY-FTDTTTLFIIELILIGWAEGRRWADII 165
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 166 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAML 223
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H I Q
Sbjct: 224 AVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAF 259
>gi|149242542|pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 96/154 (62%), Gaps = 12/154 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 14 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 72
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE L G P YPGGP NPLG KD ++ +E KLKE
Sbjct: 73 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 131
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+
Sbjct: 132 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>gi|303324981|pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 9/153 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 23 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 81
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F + +L E GYPGG + NPL A + E K KEI NGRL M+A
Sbjct: 82 NPGSVNQDPIF--KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRL-MLA 133
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LG +Q +VT GP DN+L+H+SDPWH TI+Q
Sbjct: 134 FLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 166
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI +LL GI P WY AG E+ F T TLFIV+L+L+G+AE +R+ D I
Sbjct: 115 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADII 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 174 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A++G + Q T GPIDN+ HL+DP H TI +
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 14/170 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M G+AG++ ++L G+ +P VW++ G + + +AS LF ++++LM F
Sbjct: 131 MLGMAGMVAPEILGKLGL--IPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQF 188
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE +R+ DY PGSQ+K+ F GLE G +P YPGG + N LG KD ++ + KLK
Sbjct: 189 AELRRWQDYRHPGSQSKQ-YFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLK 247
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 159
E+KNGRLAMVA LG F+QA T GP N+ +HL+DP++ I+ T G
Sbjct: 248 ELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTFGKIG 297
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE----FKF-ASTRTLFIVQLLLMGFA 51
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 161
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 162 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 220
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 221 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 104/170 (61%), Gaps = 14/170 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M G+AG++ ++L G+ +P VW++ G + + +AS LF ++++LM F
Sbjct: 109 MLGMAGMVAPEILGKLGL--IPAETGLVWFKTGVIPSEGQYDYWASPLALFWIEVVLMQF 166
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE +R+ DY PGSQ+K+ F GLE G +P YPGG + N LG KD ++ + KLK
Sbjct: 167 AELRRWQDYRHPGSQSKQ-YFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLKLK 225
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 159
E+KNGRLAMVA LG F+QA T GP N+ +HL+DP++ I+ T G
Sbjct: 226 ELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTFGKIG 275
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 124 bits (310), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 11/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI---RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAE 52
M G AG + ++ GI + VW++ G A + + A TLF +++ LMGFAE
Sbjct: 114 MLGAAGAIAPEIFGKIGIIPQQTAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAE 173
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R DY PGS K+ F G E L G +P YPGG + NP G KD ++ R K+KE+
Sbjct: 174 HRRAQDYYKPGSMGKQ-YFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEV 231
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F+QA T VGP N+L+HL+DP+ I+ L
Sbjct: 232 KNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNL 275
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE----FKF-ASTRTLFIVQLLLMGFA 51
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 103 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 161
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 162 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 220
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 221 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 266
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE----FKF-ASTRTLFIVQLLLMGFA 51
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 102 MMGVVGMIAPEALGKVGLVPSETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 160
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 161 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 219
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 220 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 265
>gi|406362893|gb|AFS34654.1| chloroplast chlorophyll a-b binding protein, partial [Leymus
secalinus]
Length = 189
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 105/166 (63%), Gaps = 13/166 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE----FKF-ASTRTLFIVQLLLMGFA 51
M GV G++ + L G+ +P W++AGA+ +++ A TLF+ ++ L+GFA
Sbjct: 23 MMGVVGMIAPEALGKVGLVPPETAIP-WFQAGAIPPAGTYQYWADPYTLFVFEMALIGFA 81
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRNAREWKLK 109
E +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K + +E KLK
Sbjct: 82 EHRRLQDWYNPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPIFNPLGFGTKSEKEMKELKLK 140
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 141 EIKNGRLAMLAFLGMSLQAIFTGVGPFQNLLDHLSDPVNNNILTSL 186
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 5/153 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P W AG ++ F TLF+++++L +AE +R+ D I
Sbjct: 115 MLGAAGIFIPEALTKAGILNTPSWTVAGDQQY-FTDATTLFVIEIILFAWAEGRRWADII 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK--DIRNAREWKLKEIKNGRLAM 118
+PG + F L G + GYPGG +PLG + D ++ + +EIKNGRLAM
Sbjct: 174 NPGCVNVDPVF--PNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAM 231
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
+A+LG VQA+ TH GPIDN+L HL+DP H TI
Sbjct: 232 LAVLGAVVQANYTHTGPIDNLLAHLADPGHNTI 264
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 1 MAGVAGILFTDLLR---VTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYM 57
M AGILF DLL G W++A + FA T TLFIV+LLL + E +RY
Sbjct: 88 MLAAAGILFVDLLGHLGAGGPAAATPWFKASDFTY-FAPTSTLFIVELLLFAWVEVRRYQ 146
Query: 58 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 117
D + PGS T + F + G EPGYPGG + +PLG +K N E KLKEIKN RLA
Sbjct: 147 DMVKPGS-TNQDPIFSQYSLPSGNEPGYPGG-IFDPLGYSKG--NMAELKLKEIKNARLA 202
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
M+A+LG FVQA T P+D++ HL+DPW +
Sbjct: 203 MLAVLGFFVQAKTTGKTPLDSLSSHLADPWSNNVF 237
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKF-ASTRTLFIVQLLLMGFAETKRYMDY 59
M GVAG+L DLL+ +P WY+A + + A ++LFI+Q++LMGF E +R+ D
Sbjct: 93 MLGVAGMLSVDLLQGILPDNVPQWYDAPLLADVYPAEWKSLFIIQMILMGFVEARRWADI 152
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
+PGS + F + G PGYPGG + +PLG +K N E K KE++NGRLAMV
Sbjct: 153 NTPGSANVDPVFNNNKLPDSG-TPGYPGG-MFDPLGFSKG--NLEESKWKELRNGRLAMV 208
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A LG+F+Q T P+ N+ +HL+DPWH + L
Sbjct: 209 ASLGMFIQYDATGKSPLTNLADHLADPWHNNVCALL 244
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F TLFIV+++ +G+AE +R+ D I
Sbjct: 116 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDKTTLFIVEMIFIGWAEGRRWADII 174
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG + +E + KEIKNGRLAM+
Sbjct: 175 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAML 232
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI
Sbjct: 233 AVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 268
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLFIV+L +G+AE +R+ D I
Sbjct: 115 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRRWADII 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 174 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 264
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLFIV+L +G+AE +R+ D I
Sbjct: 126 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRRWADII 184
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 185 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 242
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 243 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 275
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F TLFIV+++ +G+AE +R+ D I
Sbjct: 117 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDKTTLFIVEMIFIGWAEGRRWADII 175
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA-REWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG + +E + KEIKNGRLAM+
Sbjct: 176 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPDKIKELRTKEIKNGRLAML 233
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + QA T GPIDN+ HL+DP H TI
Sbjct: 234 AVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 269
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG VE+ F T TLFIV+L +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKIGILNTPSWYSAGEVEY-FTDTTTLFIVELFFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 173 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 263
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG VE+ F T TLFIV+L +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKIGILNTPSWYSAGEVEY-FTDTTTLFIVELFFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 173 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 263
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 95/157 (60%), Gaps = 9/157 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI P WY+AG + FAS+ TLF+++ +L + E +R+ D I
Sbjct: 96 MLGVAGVLVPEVLTKIGIINAPQWYDAGKSTY-FASSSTLFVIEFILFHYVEIRRWQDII 154
Query: 61 -SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
+PG ++ F +L E GYPG + NPL + E K KE+ NGRLAM+
Sbjct: 155 KNPGCVNQDPIF--KNYSLPPHECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAML 207
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A LG VQ +T GP +N+L+HL DPWH TIIQTL+
Sbjct: 208 AFLGFMVQHGITGKGPFENLLQHLFDPWHNTIIQTLS 244
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 78 LEGL-EPGYPGGPL-----LNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131
L GL P Y G L +PLGLA+D N R + E+ N R AM+ + G+ V +T
Sbjct: 50 LPGLASPAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLT 109
Query: 132 HVGPID 137
+G I+
Sbjct: 110 KIGIIN 115
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLF+V+L +G+AE +R+ D I
Sbjct: 126 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFVVELFFIGWAEGRRWADII 184
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 185 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 242
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 243 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 275
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 90/153 (58%), Gaps = 5/153 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P W AG ++ F TLF+++L+L +AE +R+ D +
Sbjct: 120 MLGAAGIFIPEALTKMGILNTPSWTVAGDADY-FTDKTTLFVIELILFAWAEGRRWADIV 178
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK--DIRNAREWKLKEIKNGRLAM 118
+PG + F L G + GYPGG +PLG + D ++ + +EIKNGRLAM
Sbjct: 179 NPGCVNVDPVF--PNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKLKDLRTREIKNGRLAM 236
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
+A+LG VQA+ TH GPIDN++ HL DP H TI
Sbjct: 237 LAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTI 269
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 122 bits (305), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY+AG +E+ F T TLFI++L+ +G+AE +R+ D +
Sbjct: 115 MLGAAGIFIPEFLTKIGILNTPSWYDAGKLEY-FTDTTTLFIIELIFIGWAEGRRWADIL 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 174 KPGCVNTDPIF--PNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A++G + Q T GPIDN+ HL+DP H T+ +
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFS 268
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELIFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG + +E + KEIKNGRLAM+
Sbjct: 173 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 263
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLF+V+L +G+AE +R+ D I
Sbjct: 115 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFVVELFFIGWAEGRRWADII 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 174 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 264
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 139 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELIFIGWAEGRRWADIL 197
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + +E + KEIKNGRLAM+
Sbjct: 198 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 255
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 256 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 288
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 97/164 (59%), Gaps = 11/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI---RELPVWYEAG----AVEFKF-ASTRTLFIVQLLLMGFAE 52
M G AG + ++ GI VW++ G A + + A TLF +++ LMGFAE
Sbjct: 114 MLGAAGAIAPEIFGKIGIIPQETAVVWFKTGVFPPAGTYNYWADPYTLFFLEMALMGFAE 173
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R D+ PGS K+ F G E L G +P YPGG + NP G KD ++ R K+KE+
Sbjct: 174 HRRAQDFYKPGSMGKQ-YFLGFEKYLGGSGDPAYPGG-IFNPFGFGKDEKSMRTLKIKEV 231
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F+QA T VGP N+L+HL+DP+ I+ L
Sbjct: 232 KNGRLAMLAILGYFIQAPFTGVGPFQNLLDHLADPFANNILTNL 275
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 121 bits (304), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L G+ P WY AG +E+ F T TLFIV+L +G+AE +R+ D I
Sbjct: 112 MLGAAGIFIPEFLTKIGVLNTPSWYSAGELEY-FTDTTTLFIVELFFIGWAEGRRWADII 170
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG + ++ + KEIKNGRLAM+
Sbjct: 171 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAML 228
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 229 AVMGAWFQHIYTATGPIDNLFAHLADPGHATIF 261
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 90/143 (62%), Gaps = 5/143 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG--AVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G AGI+ T + G+ P WY+AG VE TL ++Q LMG+AETKR+ D
Sbjct: 80 MLGAAGIILTSIGAKVGL-GFPEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYD 138
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLA 117
+ +PGSQ +GSF G +GLE GYPGG +P+GL++ D +E+K KE+KNGRLA
Sbjct: 139 FKNPGSQA-DGSFLGFTEEFKGLENGYPGGRFFDPMGLSRGDAAKYQEYKQKEVKNGRLA 197
Query: 118 MVAMLGIFVQASVTHVGPIDNIL 140
M+A LG Q + T GP+DN++
Sbjct: 198 MIACLGFAAQYAATGKGPLDNLV 220
>gi|255638199|gb|ACU19413.1| unknown [Glycine max]
Length = 156
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L G+ P WY AG +E+ F T TLFIV+L +G+AE +R+ D I
Sbjct: 1 MLGAAGIFIPEFLTKIGVLNTPSWYSAGELEY-FTDTTTLFIVELFFIGWAEGRRWADII 59
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG + ++ + KEIKNGRLAM+
Sbjct: 60 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGSPQKIKDLRTKEIKNGRLAML 117
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 118 AVMGAWFQHIYTATGPIDNLFAHLADPGHATIF 150
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 3/146 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+ +LL + G+ +LP W++A FAS+ TLF VQ+ +M +AE +R+ D
Sbjct: 86 MLGVAGMAAPELLTMFGVSDLPNWHDAPFYNGYFASSTTLFTVQMFMMNWAEIRRWQDIK 145
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS +++ +F G + L + GYPGG + NP+ K + K KEI NGRLAMVA
Sbjct: 146 NPGSVSEDPAFPGNK--LPAGDVGYPGG-IFNPMNYGKSTDELKALKAKEIANGRLAMVA 202
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDP 146
LG F+Q T VGP++N+ HLS+P
Sbjct: 203 ALGCFIQYDHTGVGPVENLTSHLSNP 228
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELIFIGWAEGRRWADIL 171
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + +E + KEIKNGRLAM+
Sbjct: 172 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 229
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 230 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 262
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L G+ P WY AG E+ F T TLF+++L+L+G+AE +R+ D I
Sbjct: 115 MLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRWADII 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 174 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A++G + Q T GPIDN+ HL+DP H TI +
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELIFIGWAEGRRWADIL 171
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + +E + KEIKNGRLAM+
Sbjct: 172 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 229
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 230 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 262
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLFIV+L +G+AE +R+ D +
Sbjct: 117 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRRWADIL 175
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 176 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 233
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 234 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFSAF 269
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + + +E + KEIKNGRLAM+
Sbjct: 173 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 263
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 161 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 219 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 161 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 219 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 251
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 161 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 218
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 219 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 254
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 90/153 (58%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 21 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 79
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + + +E + KEIKNGRLAM+
Sbjct: 80 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 137
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 138 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 170
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLFIV+L +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELFFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 173 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFSAF 266
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I
Sbjct: 101 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 160 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 217
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 218 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 250
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 88/156 (56%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I
Sbjct: 101 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 160 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAML 217
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 218 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 253
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG +E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 116 MLGAAGIFIPEFLTKIGILNTPSWYTAGELEY-FTDTTTLFIVELIFIGWAEGRRWADIL 174
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + F L G + GYPGG +PLG +E + KEIKNGRLAM+
Sbjct: 175 KPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 232
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H T+
Sbjct: 233 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATVF 265
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G+AG++ +LL G+ +LP W +AG + + LF VQ+ +M +AE +R+ D
Sbjct: 92 MLGLAGMVGPELLTKIGMADLPNWIDAGKWDGYWLGAGPLFFVQMAMMNWAEVRRWQDMK 151
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG+ E G + GYP G L +P+G AKD + A E K KEI NGRLAMVA
Sbjct: 152 APGTMN-EDPLTGANKGDTNTDVGYPKG-LFDPMGYAKDPKKAEELKRKEIANGRLAMVA 209
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
++G F QA T GP+DN+ HL+DP H I
Sbjct: 210 IVGCFAQAISTGTGPVDNLFTHLADPGHNNIF 241
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 92/152 (60%), Gaps = 7/152 (4%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L DL G+ WYEA V+++ A +TL +VQL+L + E +R+ D+
Sbjct: 89 MLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQ-ADWKTLLVVQLVLHAWVEGRRWADFH 147
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGS + FG + GYPGGP +PLG +K N E KLKEIKNGRLAMVA
Sbjct: 148 SPGSANADP--FG-NSLPSTATTGYPGGPF-DPLGFSKG--NLPELKLKEIKNGRLAMVA 201
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
LG+FVQ S T P+DN+ HL+DP H I
Sbjct: 202 SLGLFVQYSATGASPLDNLAAHLADPGHANIF 233
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLFIV+++L+G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEALTKLGILNTPFWYTAGEQEY-FTDQTTLFIVEMILLGWAEGRRWADIL 171
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +P G +E + KEIKNGRLAM+
Sbjct: 172 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAML 229
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A++G + QA T PIDN+L HL+DP H TI +
Sbjct: 230 AVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAFTS 267
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 92/152 (60%), Gaps = 7/152 (4%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L DL G+ WYEA V+++ A +TL +VQL+L + E +R+ D+
Sbjct: 85 MLGVAGMLGADLANKVGLPAAVQWYEAPLVDYQ-ADWKTLLVVQLVLHAWVEGRRWADFH 143
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
SPGS + FG + GYPGGP +PLG +K N E KLKEIKNGRLAMVA
Sbjct: 144 SPGSANADP--FG-NSLPSTATTGYPGGPF-DPLGFSKG--NLPELKLKEIKNGRLAMVA 197
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
LG+FVQ S T P+DN+ HL+DP H I
Sbjct: 198 SLGLFVQYSATGASPLDNLAAHLADPGHANIF 229
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLFIV+++L+G+AE +R+ D +
Sbjct: 113 MLGAAGIFIPEALTKLGILNTPFWYTAGEQEY-FTDQTTLFIVEMILLGWAEGRRWADIL 171
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +P G +E + KEIKNGRLAM+
Sbjct: 172 KPGSVNTDPVF--PNNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAML 229
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A++G + QA T PIDN+L HL+DP H TI +
Sbjct: 230 AVMGAWFQAVYTGARPIDNLLAHLADPGHATIFSAFTS 267
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 119 bits (298), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F TLF+V+L+L+G+AE +R+ D I
Sbjct: 101 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 159
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS + F L G + GYPGG +PLG +E + KEIKNGRL M+
Sbjct: 160 KPGSVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLTML 217
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 218 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 250
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M GVAG+ +L+ + LP W EA + A TLF+VQ+ M +AE +R+ D
Sbjct: 92 MLGVAGMAAPELVGNPFVDGPLPNWAEAPFFDGYIADANTLFVVQMFFMNWAEVRRWQDM 151
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
+PGS + + G + GYPGG L NP+G+AK + + + + KEI NGRLAMV
Sbjct: 152 KNPGSVHADP--YDENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMV 209
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A +G F+Q VT GP+ N+ H++DP H TI Q
Sbjct: 210 AAMGCFIQHDVTGTGPVANLKAHIADPVHVTIFQNF 245
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 95/168 (56%), Gaps = 11/168 (6%)
Query: 1 MAGVAGILFTDLLRVTGI---RELPVWYE------AGAVEFKFASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ + VWYE AG+ + +A T+F ++++ M FA
Sbjct: 100 MLGAAGCIAPEILGAAGLIPEKTNIVWYESGVIPPAGSYDGYWADPYTIFFIEIVAMQFA 159
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E +R D+ PGS K+ F GLE G +P YPGGP N L K +E KLKE
Sbjct: 160 ELRRLQDFRYPGSMGKQ-YFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKE 218
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
IKNGRLAM+AMLG QA++T GP N+L+HL+DP + I+ +
Sbjct: 219 IKNGRLAMLAMLGYGAQATLTREGPFQNLLDHLADPVNNNILTNFGKA 266
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 5/154 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG ++L GI +LP W++A + F TLF VQ+L+M +AE +R+ D
Sbjct: 83 MLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDATTLFWVQMLMMNWAEVRRWQDMR 142
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ +F G + L GYPGG + +PLG AK N + K KEI NGRLAMVA
Sbjct: 143 KPGSVNEDPAFSGNK--LPSGIVGYPGG-IFDPLGYAKGDLN--KLKAKEIANGRLAMVA 197
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
GI VQ T VGP+ N++ H+SDP H + Q
Sbjct: 198 FAGIMVQYDHTGVGPVANLVAHMSDPAHNNVFQA 231
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M GVAG+ ++ + LP W +A + A TLF+VQ+ LM +AE +R+ D
Sbjct: 91 MLGVAGMAAPEIFGNPLVDGPLPNWADAPFYDGYIADANTLFVVQMFLMNWAEVRRWQDM 150
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
+PGS + + G + GYPGG L NP+G+AK + + KEI NGRLAMV
Sbjct: 151 KNPGSVHADP--YDESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAMV 208
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A +G F+Q VT GP+ N+ HL+DP H TI Q
Sbjct: 209 AAMGCFIQHDVTGTGPVANLKAHLADPAHATIFQNF 244
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 88/149 (59%), Gaps = 4/149 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 41 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 99
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + + +E + KEIKNGRLAM+
Sbjct: 100 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 157
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWH 148
A++G + Q T GPIDN+ HL+DP H
Sbjct: 158 AVMGAWFQHIYTGTGPIDNLFAHLADPGH 186
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 102/164 (62%), Gaps = 10/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAVE-----FKFASTRTLFIVQLLLMGFAE 52
M G AG + ++L G+ +E + W+++G + +A TLF+++L LMGFAE
Sbjct: 62 MLGAAGAIAPEILGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLELALMGFAE 121
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
+R DY PGS K+ F GLE L G P YPGGP+ N LG K+ + +E KLKEI
Sbjct: 122 HRRAQDYYKPGSMGKQ-YFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELKELKLKEI 180
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KNGRLAM+A+LG F+QA T VGP N+L+HL+DP H ++ L
Sbjct: 181 KNGRLAMMAVLGYFIQAIFTGVGPFQNLLDHLADPVHNNVLTNL 224
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 56
M VAGIL +LL G P WY+AG E+ FA +LF VQ+LL + E +RY
Sbjct: 108 MLAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRY 165
Query: 57 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGR 115
D++ PGS ++ F +G EPGYPGG + +P G +K DI++ KLKEIKNGR
Sbjct: 166 QDFVKPGSANQD-PIFTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGR 220
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
LAM+A G QA T P+ N+ HL+DPW T+ Q
Sbjct: 221 LAMLAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTVWQN 259
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 92/159 (57%), Gaps = 12/159 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 56
M VAGIL +LL G P WY+AG E+ FA +LF VQ+LL + E +RY
Sbjct: 108 MLAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRY 165
Query: 57 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGR 115
D++ PGS ++ F +G EPGYPGG + +P G +K DI++ KLKEIKNGR
Sbjct: 166 QDFVKPGSANQD-PIFTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGR 220
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
LAM+A G QA T P+ N+ HL+DPW T+ Q
Sbjct: 221 LAMLAFAGFIGQAYTTGTTPLKNLSTHLADPWSTTVWQN 259
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVE------FKFASTRTLFIVQLLLMGF 50
M G+AG L ++L G E VW+ +G + + TLF V+ ++M F
Sbjct: 106 MLGIAGFLAPEVLATIGAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNF 165
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE KR+ DY SPGSQ K+ F GLEA G P YPGG N L L K ++ +
Sbjct: 166 AELKRWQDYQSPGSQGKQ-YFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTN 224
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
EI+NGRLAM+A LG F QA +T GP N+L+HL+DP ++ LA
Sbjct: 225 EIRNGRLAMIACLGCFGQAVMTTKGPFANLLDHLADPISNNVLGNLA 271
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 88/146 (60%), Gaps = 3/146 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG + +LL G+ +LP W +AG ++ +A LF +Q+ + +AE +R+ D
Sbjct: 89 MLGVAGAVAPELLTKIGVADLPNWVDAGTYQY-WAPAGPLFFIQMAMFNWAEVRRWQDMK 147
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS + FG + + GYPGG L + LG AKD A+E KLKEIKNGRLAMVA
Sbjct: 148 NPGSMNTD-PLFGYNSNDTNTDVGYPGG-LFDKLGYAKDPAKAKELKLKEIKNGRLAMVA 205
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDP 146
LGI Q T GP++N+ H++ P
Sbjct: 206 FLGICAQYVQTGQGPVENLFSHIASP 231
>gi|125656346|gb|ABN48563.1| chloroplast PSI type III chlorophyll a/b-binding protein [Brassica
juncea]
Length = 110
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 2/108 (1%)
Query: 49 GFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWK 107
GFAE +R D+ +PGS K+ F GLE G P YPGGP NPLG KD ++ +E K
Sbjct: 1 GFAEHRRLQDWYNPGSMGKQ-YFLGLEKGFAGSGNPAYPGGPFFNPLGFGKDEKSMKELK 59
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LKE+KNGRLAM+A+LG FVQ VT VGP N+L+HL+DP + ++ +L
Sbjct: 60 LKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 107
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 10/158 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 56
M VAGIL +LL G P WY+AG ++ FA +LF VQ+LL +AE +RY
Sbjct: 108 MLAVAGILVPELLTNIGF-SWPGAGVAWYDAGKFQY-FAPASSLFGVQMLLFAWAELRRY 165
Query: 57 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
D++ PGS ++ F +G EPGYPGG + +P G +K + + K KEIKNGRL
Sbjct: 166 QDFVKPGSANQD-PIFSNNKLPDGNEPGYPGG-IFDPFGWSKG--DMKSLKTKEIKNGRL 221
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
AM+A G QA T P+ N+ HL+DPW T+ Q
Sbjct: 222 AMLAFAGFAAQAYTTGTTPLKNLATHLADPWATTVWQN 259
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 115 bits (288), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 90/158 (56%), Gaps = 10/158 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 56
M VAGIL +LL G P WY+AG ++ FA +LF VQ+LL +AE +RY
Sbjct: 108 MLAVAGILVPELLTNIGF-SWPGAGVAWYDAGKFQY-FAPASSLFGVQMLLFAWAELRRY 165
Query: 57 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
D++ PGS ++ F +G EPGYPGG + +P G +K + + K KEIKNGRL
Sbjct: 166 QDFVKPGSANQD-PIFSNNKLPDGNEPGYPGG-IFDPFGWSKG--DMKSLKTKEIKNGRL 221
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
AM+A G QA T P+ N+ HL+DPW T+ Q
Sbjct: 222 AMLAFAGFAAQAYTTGTTPLKNLATHLADPWATTVWQN 259
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 115 bits (287), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 90/152 (59%), Gaps = 4/152 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG ++L GI LP W+EA + + F TLF VQ+L+M +AE +R+ D
Sbjct: 49 MLGVAGAAAPEILTNMGISNLPNWHEAPSYDGYFTDATTLFWVQMLMMNWAEVRRWQDIR 108
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS +++ + F A L GYPGG + +PLG AK + + K KEI NGRLAMVA
Sbjct: 109 KPGSVSEDPTPFS-NAKLPAGVVGYPGG-IFDPLGYAKG--DLKTLKAKEIANGRLAMVA 164
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
GI VQ T VGP+ N++ H++DP H +
Sbjct: 165 FAGIMVQYDHTGVGPVANLVSHMADPAHNNVF 196
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
+PG + F L G + GYPGG +PLG + + +E + KEIKNGRLAM+
Sbjct: 173 NPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNIL-EHLSDPWHKTII 152
A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIF 263
>gi|303324980|pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 77/122 (63%), Gaps = 7/122 (5%)
Query: 23 VWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 77
W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE
Sbjct: 52 AWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKG 110
Query: 78 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
G P YPGGP NPLG KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP
Sbjct: 111 FGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPY 170
Query: 137 DN 138
N
Sbjct: 171 QN 172
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 5/157 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG ++ F T TLFI++L+L+G+AE +R+ D I
Sbjct: 109 MLGAAGIFIPEFLTKIGILNTPSWYTAGEHQY-FTDTTTLFIIELILIGWAEGRRWADII 167
Query: 61 -SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAM 118
+PG + F + + G G P G L+PLG +E + KEIKNGR+AM
Sbjct: 168 INPGCVNTDPIF--PQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAM 225
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+A++G + QA T GPIDN H++DP H TI Q
Sbjct: 226 LAVMGAWFQAEHTGTGPIDNFFAHVADPGHATIFQAF 262
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M GV G+ +L++ + +P W EA + AS TLF+VQ+ +M +AE +R+ D
Sbjct: 92 MLGVTGMAAPELIQNPFVEGAMPNWAEAPLWDGYMASPNTLFVVQMFMMNWAEVRRWQDM 151
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
+PG+ E G + GYP G L +P+G+AKD + K+KEI NGRLAMV
Sbjct: 152 KNPGTMN-EDPLTGANKGDTNTDVGYPKG-LFDPMGMAKDPEKVKVLKVKEIANGRLAMV 209
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
A++G +Q T VGPI N+ HL+DP H TI
Sbjct: 210 AVMGCIIQNEATGVGPIANLKAHLADPAHNTI 241
>gi|296090224|emb|CBI40043.3| unnamed protein product [Vitis vinifera]
Length = 209
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 113
R+ D+ +PGS K+ F GLE L G +P YPGGPL NPLG KD ++ ++ KLKE+KN
Sbjct: 105 RFQDWANPGSMGKQ-YFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKN 163
Query: 114 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
GRLAM+A+LG F Q VT VGP+ N+L+HL+DP + II +L
Sbjct: 164 GRLAMLAILGYFAQGPVTGVGPLQNLLDHLADPVNNNIITSL 205
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 100/180 (55%), Gaps = 26/180 (14%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVE---------------FKFASTR-T 39
M G AG L ++L G+ +P W++AG ++ F++ + + T
Sbjct: 174 MLGAAGALSPEVLGKAGV--IPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYT 231
Query: 40 LFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEA-ALEGLEPGYPGGPLLNPLGL-A 97
L L+ MGFAET+R+ +Y PGS K+ F GLE +P YPGG N GL A
Sbjct: 232 LLFTMLVAMGFAETRRWQEYKEPGSVQKQ-FFLGLEKLTPPSQQPAYPGGGFFNFAGLGA 290
Query: 98 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
KD + E K+KEI+NGRLAM+A LG VQA VTHVGP N+L+H++ P + ++ L N
Sbjct: 291 KDEKQMFELKVKEIRNGRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRLTN 350
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 86/146 (58%), Gaps = 3/146 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG + +LL G+ +LP W +A ++ +A TLF +Q+ + +AE +R+ D
Sbjct: 86 MLGVAGCVAPELLTKIGVADLPNWVDAATYQY-WAPGGTLFFIQMAMFNWAEIRRWQDMK 144
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS + FG + + GYP G L + G AKD + E KLKEIKNGRLAM+A
Sbjct: 145 NPGSVNTD-PLFGYNSNDTNTDVGYPKG-LFDKFGWAKDEKTTAELKLKEIKNGRLAMLA 202
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDP 146
LGI Q T VGP++N+ H+ +P
Sbjct: 203 FLGICAQYVQTGVGPVENLFSHMGNP 228
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL ++L+ G E WY AG E+ FA TLFI Q+ LMG+AE +R+MDY+
Sbjct: 117 MLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFIAQMALMGWAEGRRWMDYL 175
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRL 116
+PGS E F + + GYPGG + R + E + KEIKNGRL
Sbjct: 176 NPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRL 230
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
AM+A +G + QA T GP+DN+L HL+DP H I +
Sbjct: 231 AMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTS 271
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 93/165 (56%), Gaps = 11/165 (6%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAVE----FK--FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ E V W+ G + +K +A TLF ++++ + FA
Sbjct: 117 MLGAAGCIAPEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPFTLFFIEVVAIQFA 176
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGLE-PGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E KR DY +PGSQ+++ F GLE +G + P YPGGP N K ++ KL E
Sbjct: 177 ELKRLQDYKNPGSQSRQ-YFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNE 235
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
IKNGRLAM+AM G QA +T GP DN+L HL+DP +I L
Sbjct: 236 IKNGRLAMLAMFGYGAQAVITGDGPFDNLLAHLADPTGANLITNL 280
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 94/168 (55%), Gaps = 15/168 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYE------AGAVEFKFASTRTLFIVQLLLMG 49
M G AG + ++L G+ +P W+E AG+ +A T+F V+++ M
Sbjct: 99 MLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQ 156
Query: 50 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 108
FAE +R D+ PGS ++ F GLEA +G + YPGGP N L K +E KL
Sbjct: 157 FAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKL 215
Query: 109 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
KEIKNGRLAM+AMLG QA +T GP N++EHL+DP + I+ A
Sbjct: 216 KEIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNFA 263
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 94/167 (56%), Gaps = 15/167 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYE------AGAVEFKFASTRTLFIVQLLLMG 49
M G AG + ++L G+ +P W+E AG+ + +A T+F V+++ M
Sbjct: 86 MLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAGSYDGYWADPYTIFFVEIVAMQ 143
Query: 50 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 108
FAE +R D+ PGS ++ F GLEA +G + YPGGP N L K +E KL
Sbjct: 144 FAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKL 202
Query: 109 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KEIKNGRLAM+AMLG QA +T GP N++EHL+DP + I+
Sbjct: 203 KEIKNGRLAMLAMLGYGAQAVLTGKGPFQNLVEHLADPVNNNILTNF 249
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV+GIL +LL G E WYEAG E+ FA TLFIVQL LMG+ E +R+ D +
Sbjct: 104 MLGVSGILIPELLEKMGYVENYSWYEAGTQEY-FADPTTLFIVQLALMGWVEGRRWADLV 162
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS E + GYPGG +P+ + + KEIKNGRLAM+
Sbjct: 163 NPGSVDIEPKLPNRPNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 220
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A +G + QA T GPI+N++ HL+DP H I +
Sbjct: 221 AFVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFTS 258
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 93/167 (55%), Gaps = 15/167 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYE------AGAVEFKFASTRTLFIVQLLLMG 49
M G AG + ++L G+ +P W+E AG+ +A T+F V+++ M
Sbjct: 99 MLGAAGCIAPEVLGAAGL--IPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQ 156
Query: 50 FAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKL 108
FAE +R D+ PGS ++ F GLEA +G + YPGGP N L K +E KL
Sbjct: 157 FAELRRLQDFRYPGSMGQQ-YFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKL 215
Query: 109 KEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
KEIKNGRLAM+AMLG QA +T GP N++EHL+DP + I+
Sbjct: 216 KEIKNGRLAMLAMLGYGAQAVMTGKGPFQNLVEHLADPVNNNILTNF 262
>gi|357139429|ref|XP_003571284.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Brachypodium distachyon]
Length = 115
Score = 108 bits (271), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 76/113 (67%), Gaps = 3/113 (2%)
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLA-KDIRN 102
+ L+GFAE +R D+ +PGS K+ F GLE L G +P YPGGP+ NPLG K +
Sbjct: 1 MALIGFAEHRRLQDWYNPGSMGKQ-YFLGLEKFLGGSGDPAYPGGPIFNPLGFGTKSDKE 59
Query: 103 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
E KLKEIKNGRLAM+A LG+ +QA T VGP N+L+HLSDP + I+ +L
Sbjct: 60 LAELKLKEIKNGRLAMLAFLGMSIQAIFTGVGPFQNLLDHLSDPVNNNILTSL 112
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 96/171 (56%), Gaps = 19/171 (11%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M GVAGI+ ++L G+ +P VW+ +GA+ + +A+ T+F V + +M F
Sbjct: 124 MLGVAGIVAPEILGGMGV--IPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNF 181
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE KR DY PGSQ E G E G P YPGG NP L KD + + K
Sbjct: 182 AEIKRGQDYWFPGSQA-ETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGKD--DMASMQKK 238
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
E+KNGRLAM+A LG VQA+VT GP NI +H++DP+ + LAN G+
Sbjct: 239 EVKNGRLAMMAFLGCMVQAAVTGEGPWKNICDHVADPFGANM---LANFGA 286
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 9/146 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG++ DL + P W EAG E+ +A LF +Q+ +M +AE +R+ D
Sbjct: 84 MLGVAGMVGPDL----APWDTPSWIEAGKFEY-WAPAGPLFFIQMAMMNWAEVRRWQDMK 138
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS K+ FG A + GYPGG L + LG AK ++ KLKEIKNGRLAMVA
Sbjct: 139 DPGSMNKD-PLFGYNANDTNTDVGYPGG-LFDKLGYAK--KDLDTLKLKEIKNGRLAMVA 194
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDP 146
+ G FVQ + T V P+ N+ H+++P
Sbjct: 195 IAGCFVQGATTGVSPLTNLTSHIANP 220
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 97/171 (56%), Gaps = 19/171 (11%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M GVAGI+ ++L G+ +P VW+ +GA+ + +A+ T+F V + +M F
Sbjct: 117 MLGVAGIVAPEILGQAGL--IPESTGLVWFTSGAIPPQGTFDYWANPMTIFWVNMCMMNF 174
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE KR DY PGSQ ++ G E G P YPGG N GL KD + + + K
Sbjct: 175 AEIKRGQDYWYPGSQAEQ-PLMGWEKGFAGSGNPAYPGGKYFNFAGLGKD--DMAKMQKK 231
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
EIKNGRLAM+A LG VQA VT GP NI +H++DP+ + LAN G+
Sbjct: 232 EIKNGRLAMMAFLGCMVQAVVTGEGPWKNICDHVADPFGANM---LANFGA 279
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL + L G E WY+AGA EF FA TLF+VQL LMG+ E +R+ D I
Sbjct: 104 MLAVAGILIPECLERLGFIENFSWYDAGAQEF-FADPTTLFVVQLALMGWVEGRRWADLI 162
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PG + +F A + GYPGG +P + + KEIKNGRLAM+
Sbjct: 163 NPGCVDIQLTF--PNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAML 220
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A +G QA T GPI+N++ H++DP H + +
Sbjct: 221 AFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTS 258
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 86/159 (54%), Gaps = 4/159 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL + L G E WY+AGA EF FA TLF+VQL LMG+ E +R+ D I
Sbjct: 74 MLAVAGILIPECLERLGFIENFSWYDAGAQEF-FADPTTLFVVQLALMGWVEGRRWADLI 132
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PG + +F A + GYPGG +P + + KEIKNGRLAM+
Sbjct: 133 NPGCVDIQLTF--PNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAML 190
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
A +G QA T GPI+N++ H++DP H + +
Sbjct: 191 AFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 229
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV+GIL ++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D +
Sbjct: 112 MLGVSGILIPEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIV 170
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS E + GYPGG +P+ + + KEIKNGRLAM+
Sbjct: 171 NPGSVDIEPKLPNRPNPKPDV--GYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAML 228
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A LG QA PIDN++ HL+DP H I +
Sbjct: 229 AFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFTS 266
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 10/161 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+ E +R+MDY+
Sbjct: 115 MLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWVEGRRWMDYL 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRL 116
+PGS E F + + GYPGG + R + E + KEIKNGRL
Sbjct: 174 NPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRL 228
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
AM+A +G + Q T GP+DN+ HL+DP H I +
Sbjct: 229 AMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 269
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 87/161 (54%), Gaps = 10/161 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+ E +R+MDY+
Sbjct: 118 MLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWVEGRRWMDYL 176
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRL 116
+PGS E F + + GYPGG + R + E + KEIKNGRL
Sbjct: 177 NPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRL 231
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
AM+A +G + Q T GP+DN+ HL+DP H I +
Sbjct: 232 AMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTS 272
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 14/168 (8%)
Query: 1 MAGVAGILFTDLLRVTG-IRELP---VWYEAGAV------EFKFASTRTLFIVQLLLMGF 50
M G AG + ++L G I + P +W+++G + + + +LF ++++L+ F
Sbjct: 79 MLGAAGCIAPEILATAGVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPYSLFFIEVILVQF 138
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE +R+ D+ +PGSQ K+ F GLE L+G +P YPGG N L K + +E K K
Sbjct: 139 AELRRWQDFRNPGSQGKQ-YFLGLEEVLKGSGDPSYPGGQFFNLFNLGK--SDLKELKTK 195
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
E+KNGRLAM+A+ G QA +T GP N+ +HLSDP I+ +
Sbjct: 196 ELKNGRLAMLAVFGYGAQAVITAEGPFKNLTDHLSDPTGHNILTNFGH 243
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL + L G E W++AGA E+ FA TLFIVQL+LMG+ E +R+ D I
Sbjct: 142 MLAVAGILIPEWLESLGFIENYNWFDAGAREY-FADPTTLFIVQLVLMGWVEGRRWADMI 200
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL----GLAKDIRNAREWKLKEIKNGRL 116
PG E + + GYPGG +PL G + + R KEIKNGRL
Sbjct: 201 KPGCVDIEPTLPNKTKPKPDV--GYPGGLWFDPLMWGRGSPEPVMVLRT---KEIKNGRL 255
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
AM+A +G QA T GPI+N++ H++DP H I +
Sbjct: 256 AMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTSQ 297
>gi|357495585|ref|XP_003618081.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519416|gb|AET01040.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 94
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Query: 71 FFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 129
F GLE L G EP YPGGP+ NPLG KD ++ ++ KLKE+KNGRLAM+A+LG FVQA
Sbjct: 6 FLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQAL 65
Query: 130 VTHVGPIDNILEHLSDPWHKTIIQTL 155
VT VGP N L HL+DP + I+ +L
Sbjct: 66 VTRVGPYQNFLNHLADPSNNNILTSL 91
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/143 (40%), Positives = 85/143 (59%), Gaps = 10/143 (6%)
Query: 23 VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 77
VW++ G + + +A LF V + +M F E R +Y +PG +TK+ S GLE
Sbjct: 143 VWFKNGIIPAQGSYDFWAPPTALFWVMVCMMNFVEINRLTEYANPGFRTKQ-SLAGLEKG 201
Query: 78 LEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
+ G P YPGG NP+G+ K+ +A K+KEIKNGRLAM+A GI VQA +T GP+
Sbjct: 202 MGGTGNPAYPGGSF-NPMGMGKNDMDAM--KVKEIKNGRLAMMAFFGIMVQAIITGEGPV 258
Query: 137 DNILEHLSDPWHKTIIQTLANSG 159
N+ +H++DP+ ++ AN G
Sbjct: 259 KNLTDHVTDPFAHNLLTNFANVG 281
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+AE +R+ DY
Sbjct: 115 MLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGWAEGRRWADY 173
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGR 115
+ PG E F + + + GYPGG + A R + E + KEIKNGR
Sbjct: 174 LRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVLRTKEIKNGR 228
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 229 LAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 270
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 86/156 (55%), Gaps = 9/156 (5%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P W E FAS+ T V + + E +R+ D
Sbjct: 83 MLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSST-YVEIRRWQDIK 141
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A E K KE+ NGRLAM+A
Sbjct: 142 NPGSVNQDPIFKSY--SLPPHECGYPGR-VFNPLNFA-----PLENKEKELANGRLAMLA 193
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +V GP +N+ +HL+DPWH TIIQT++
Sbjct: 194 FLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQTIS 229
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 11/162 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+AE +R+ DY
Sbjct: 115 MLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGWAEGRRWADY 173
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGR 115
+ PG E F + + GYPGG + A R + E + KEIKNGR
Sbjct: 174 LRPGCVDIEPRFPNRRNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVLRTKEIKNGR 228
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 229 LAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 270
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 92/163 (56%), Gaps = 16/163 (9%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M GVAG++ ++L GI +P VW+++GA+ + +A T+F V ++LM F
Sbjct: 140 MLGVAGVVAPEVLGGMGI--IPADTGLVWFKSGAIPPQGTFDYWADPTTIFWVNMVLMNF 197
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE KR DY PGSQ E G E G P YPGG N L K + + + K
Sbjct: 198 AEVKRGQDYWYPGSQ-GETPLMGWEKGFAGSGAPAYPGGKYFNFANLGK--TDMAKMQKK 254
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
EIKNGRLAM+A LGI VQA T GP NI++H+SDP+ ++
Sbjct: 255 EIKNGRLAMMAFLGIAVQAVATGEGPFKNIVDHISDPFANNML 297
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+AE +R+ DY
Sbjct: 76 MLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGWAEGRRWADY 134
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGR 115
+ PG E F + + + GYPGG + A R + E + KEIKNGR
Sbjct: 135 LRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVLRTKEIKNGR 189
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 190 LAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 231
>gi|223948005|gb|ACN28086.1| unknown [Zea mays]
Length = 163
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 89/162 (54%), Gaps = 11/162 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M AGIL DLL G + W++AG+ E+ FA TLF+ Q+ LMG+AE +R+ DY
Sbjct: 7 MLAAAGILVPDLLARWGFIDAGFSWFDAGSREY-FADPWTLFVSQMALMGWAEGRRWADY 65
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGR 115
+ PG E F + + + GYPGG + A R + E + KEIKNGR
Sbjct: 66 LRPGCVDIEPRFPNRKNPVPDV--GYPGGLWFD---WANWGRGSPEPVMVLRTKEIKNGR 120
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
LAM+A +G + QA T GPIDN+L HL+DP H I +
Sbjct: 121 LAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTS 162
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 10/161 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+AE +R+ DY+
Sbjct: 109 MLAVAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWAEGRRWADYL 167
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRL 116
+PG E + + GYPGG + R + E + KEIKNGRL
Sbjct: 168 NPGCVAVEPRLPNRRNPVPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRL 222
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
AM+A +G + QA T GPIDN+L HL+DP H + +
Sbjct: 223 AMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV+GIL ++L G + WY AG+VE+ FA TLFIVQL LMG+ E +R+ D +
Sbjct: 112 MLGVSGILIPEILEKIGYVKNFSWYNAGSVEY-FADPTTLFIVQLALMGWVEGRRWADIV 170
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS E + GYPGG +P+ + + KEIKNGRLAM+
Sbjct: 171 NPGSVDIEPKLPNRPNPKPDV--GYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAML 228
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDP 146
A LG QA PIDN++ HL+DP
Sbjct: 229 AFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL ++L+ G E WY AG E+ FA TLF+ Q+ LMG+ E +R+MDY+
Sbjct: 118 MLAVAGILIPEILQKWGFMEEFSWYTAGEREY-FADPWTLFVTQMALMGWVEGRRWMDYL 176
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRL 116
+PGS E F + + GYPGG + R + E + KEIKNGRL
Sbjct: 177 NPGSVDIEPRFPNRKNPTPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRL 231
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
AM+A +G + Q T GP+ N+ HL+DP H I +
Sbjct: 232 AMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTS 272
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 84/147 (57%), Gaps = 12/147 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELP----VWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRY 56
M VAGIL +LL G P WY+AG E+ FA +LF VQ+LL + E +RY
Sbjct: 94 MLAVAGILVPELLSNIGF-SWPGAGVAWYDAGKFEY-FAPASSLFGVQMLLFAWVEIRRY 151
Query: 57 MDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGR 115
D++ PGS ++ F +G EPGYPGG + +P G +K DI++ KLKEIKNGR
Sbjct: 152 QDFVKPGSANQD-PIFTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKSL---KLKEIKNGR 206
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEH 142
LAM+A G QA T P+ N+ H
Sbjct: 207 LAMLAFAGFIGQAYTTGTTPLKNLSTH 233
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 86/157 (54%), Gaps = 13/157 (8%)
Query: 1 MAGVAGILFTDLLRVTGI--RELPV-WYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYM 57
M GVAGIL +LL TG+ + V W++AG F +A TL + LL +AE R
Sbjct: 47 MLGVAGILVQELLHKTGLGGKAADVYWFDAGNNTF-WAPKETLIAISFLLFAWAECNRAQ 105
Query: 58 DYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLA 117
DY PGS + FG +++ +E GYPG +PL K+ + WKLKEIKNGRLA
Sbjct: 106 DYFKPGSNVSDP--FG--NSIKYVELGYPG---FDPLSFTKN--DYAGWKLKEIKNGRLA 156
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
M+A LG Q + P+D + +HLS+PW +
Sbjct: 157 MLAFLGFVAQHNAQPGSPLDQLADHLSNPWKNHFVNN 193
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 85/156 (54%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GIL +LL G E WY+AGA E+ F TLF+VQ+ LMG+ E +R+ D +
Sbjct: 106 MLAVFGILVPELLEKIGYIENFSWYDAGAREY-FVDPTTLFVVQMGLMGWVEGRRWADMV 164
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS E + + GYPGG +P+ + + KEIKNGRLAM+
Sbjct: 165 NPGSVDIEPKVPHITNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 222
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A +G + QA T GPI+N++ HL+DP H I
Sbjct: 223 AFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 10/161 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M AGIL ++L G E W +AGA ++ FA TLF+ Q+ LMG+AE +R+ DY+
Sbjct: 109 MLAAAGILVPEVLEKWGFMEDYSWIDAGARDY-FADPWTLFVSQMALMGWAEGRRWADYL 167
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE----WKLKEIKNGRL 116
+PG E + + GYPGG + R + E + KEIKNGRL
Sbjct: 168 NPGCVAVEPRLPNRRNPVPDV--GYPGGLWFD---WGNWGRGSPEPVMVLRTKEIKNGRL 222
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
AM+A +G + QA T GPIDN+L HL+DP H + +
Sbjct: 223 AMLAFVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTS 263
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GIL + L G E WYEAG+ E+ FA + TLF+ Q++LMG+AE +R+ D I
Sbjct: 114 MLAVTGILIPECLERLGFIENFSWYEAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLI 172
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS E + + GYPGG + + + + KEIKNGRLAM+
Sbjct: 173 KPGSVDIEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 230
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A +G QA+ T PI+N++ HL+DP H + +
Sbjct: 231 AFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 268
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GI+ + L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I
Sbjct: 116 MLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLI 174
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS E + + GYPGG + + + + KEIKNGRLAM+
Sbjct: 175 KPGSVDIEPKY--PHKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 232
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A LG QA+ T PI+N++ HL+DP H + +
Sbjct: 233 AFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 270
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GI+ + L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLI 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS E + + GYPGG + + + + KEIKNGRLAM+
Sbjct: 174 KPGSVDIEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A LG QA+ T PI+N++ HL+DP H + +
Sbjct: 232 AFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GI+ + L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLI 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS E + + GYPGG + + + + KEIKNGRLAM+
Sbjct: 174 KPGSVDIEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A LG QA+ T PI+N++ HL+DP H + +
Sbjct: 232 AFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 84/156 (53%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GIL +LL G E WY+AG E+ F TLF+VQ+ LMG+ E +R+ D +
Sbjct: 106 MLAVFGILVPELLERIGYIENFSWYDAGTREY-FVDPTTLFVVQMGLMGWVEGRRWADIV 164
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS E + + GYPGG +P+ + + KEIKNGRLAM+
Sbjct: 165 NPGSVDIEPKVPHVTNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 222
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A +G + QA T GPI+N++ HL+DP H I
Sbjct: 223 AFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M AGIL + L G + W++AG E+ FA TLF+VQL+LMG+ E +R+ D I
Sbjct: 106 MLAAAGILIPEWLERLGFIDNFNWFDAGTREY-FADPTTLFVVQLILMGWIEGRRWADMI 164
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + + GYPGG +P + + KEIKNGRLAM+
Sbjct: 165 KPGCVDIDPKL--PHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAML 222
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A +G + QA T GPIDN++ H++DP H I +
Sbjct: 223 AFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTS 260
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 71 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 130
+F + E L+ PG +PLGL D + + + E+ +GR AM+A GI + +
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWL 118
Query: 131 THVGPIDNI-------LEHLSDPWHKTIIQTL 155
+G IDN E+ +DP ++Q +
Sbjct: 119 ERLGFIDNFNWFDAGTREYFADPTTLFVVQLI 150
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 84/154 (54%), Gaps = 4/154 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GI+ + L G E WY+AG+ E+ FA + TLF+ Q++LMG+AE +R+ D I
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREY-FADSTTLFVAQMVLMGWAEGRRWADLI 173
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PGS E + + GYPGG + + + + KEIKNGRLAM+
Sbjct: 174 KPGSVDIEPKY--PHKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAML 231
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
A LG QA+ T PI+N++ HL+DP H +
Sbjct: 232 AFLGFCFQATYTSQDPIENLMAHLADPGHCNVFS 265
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 4/158 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M AGIL + L G + W++AG E+ FA TLF+VQL+LMG+ E +R+ D I
Sbjct: 106 MLAAAGILIPEWLERLGFIDNFNWFDAGTREY-FADPTTLFVVQLILMGWIEGRRWADMI 164
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
PG + + GYPGG +P + + KEIKNGRLAM+
Sbjct: 165 KPGCVDIDPKLPHKTKPKPDI--GYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAML 222
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A +G + QA T GPIDN++ H++DP H I +
Sbjct: 223 AFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTS 260
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 71 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 130
+F + E L+ PG +PLGL D + + + E+ +GR AM+A GI + +
Sbjct: 59 WFPGSSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPEWL 118
Query: 131 THVGPIDNI-------LEHLSDPWHKTIIQTL 155
+G IDN E+ +DP ++Q +
Sbjct: 119 ERLGFIDNFNWFDAGTREYFADPTTLFVVQLI 150
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 87/182 (47%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL----------------FI 42
M G G++ +LL + GI PVW++ G + + + L I
Sbjct: 43 MLGALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIVIAI 102
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGG L +P
Sbjct: 103 CQALLMVGPEYARY-------------------CGIEALEPLGIYLPGDLNYPGGALFDP 143
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD E K+KEIKNGRLAMVA LG +VQA+VT GP+ N++EHLSDP H I+
Sbjct: 144 LGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQAAVTGKGPVQNLIEHLSDPLHNNILS 203
Query: 154 TL 155
+
Sbjct: 204 SF 205
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 90/161 (55%), Gaps = 5/161 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL + G+ + WY+AG+ E+ FA TL + QL LMG+ E +R+ D +
Sbjct: 110 MLAVAGILLPEWFESLGLIQNFSWYDAGSREY-FADPTTLLVAQLALMGWVEGRRWADLV 168
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS + + A+ + GYPGG +P+ + + KEIKNGRLAM+
Sbjct: 169 NPGSVDVDLKLPHKKKAMADV--GYPGGFWFDPMMWGRGSPEPVMVLRTKEIKNGRLAML 226
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
A +G++ QA T GP++N+ H++DP H I + SGS
Sbjct: 227 AFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS-SGS 266
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 84/163 (51%), Gaps = 11/163 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK---FASTRTLFIVQLLLMGFAETKRYM 57
M G AGIL T LL G ++P WYEAG V + S L ++L GFAE KR
Sbjct: 99 MTGCAGILLTSLLHAGGA-DVPEWYEAGKVYMEKNPNVSFGALVYSTIVLSGFAEFKRLN 157
Query: 58 DYISPGSQTK---EGSFFGLEAALEGLEPGYP--GGPLLNPLGLAK-DIRNAREWKLKEI 111
D +PGSQ F G+ +G G P GG +P+GL + ++K EI
Sbjct: 158 DIRNPGSQGSGILPEDFKGV-GGPQGRTVGGPYVGGRFFDPMGLCRGSPEQTLKYKWNEI 216
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
+NGRLAM+ LG Q T GPIDN+++H+SDP H I
Sbjct: 217 RNGRLAMIGFLGFAAQYCATGKGPIDNLIDHVSDPTHVNFISN 259
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 89/164 (54%), Gaps = 20/164 (12%)
Query: 1 MAGVAGILFTDLLRVTGIRE------LPVWYEAGAV--EFKFASTRTLFIVQLLLMGFAE 52
M G AGIL ++ TG++ P W+EAG V E S +L LLMG+AE
Sbjct: 80 MLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVAESGPWSMGSLTFTMFLLMGWAE 139
Query: 53 TKRYMDYISPGSQTKE--------GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
KR D++ PGSQ GS G+E L E GYPGG + +P ++K+ +
Sbjct: 140 HKRLYDFVKPGSQAVGWAWAPLGLGSITGVEEPLVAKENGYPGG-IFDPFQMSKNEAKYK 198
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHV--GPIDNILEHLSDP 146
+K E+ NGRLAM AM G FV + + GPIDN+++H+S+P
Sbjct: 199 WYKQSEVTNGRLAMTAMFG-FVSQHIAYPGKGPIDNLVDHVSNP 241
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 17/170 (10%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M GVAG++ ++L GI +P VWY+AG + + +A+ T+F + LM F
Sbjct: 113 MLGVAGMVAPEVLGGLGI--IPQETGLVWYKAGMIPAQGTYDYWANPFTIFWINAALMNF 170
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE +R DY +PGS K+ G E L G EP YPGG N +G K + + ++K
Sbjct: 171 AELRRAQDYWNPGSMGKQ-ELIGWEKMLGGSGEPAYPGG-FFNIMGQGKS--DMAKMRVK 226
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 159
EIKNGRLAM+A QA +T GP+ N+++H+SDP+ ++ N G
Sbjct: 227 EIKNGRLAMMACFACGAQAVMTGEGPVKNLIDHVSDPFGHNLLVNFQNIG 276
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/159 (40%), Positives = 82/159 (51%), Gaps = 31/159 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA-------------STRTLFIVQLLL 47
M G G +F +LL G LPVW++AG F+ S + VQ++L
Sbjct: 146 MLGALGCIFPELLNSAGFN-LPVWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVL 204
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 107
MG +E R+ G G A + YPGG +PLG AKD A E K
Sbjct: 205 MGASEAYRF-----------NGGPLGEPADVL-----YPGG-AFDPLGFAKDPSKAAELK 247
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
+KEIKNGRLAM AMLG +VQA T GPI+N+ EHL+DP
Sbjct: 248 VKEIKNGRLAMTAMLGYYVQALATGKGPIENLSEHLADP 286
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV-- 43
M G++ +LL + G+ PVW++ G + F+ A + + ++
Sbjct: 82 MLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAI 141
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGG L +P
Sbjct: 142 CQALLMVGPEYARY-------------------CGIEALEPLGLYLPGDINYPGGALFDP 182
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD + K+KEIKNGRLAMVA LG ++QA+VT GPI N++EHLSDP H I+
Sbjct: 183 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 242
Query: 154 TL 155
+
Sbjct: 243 SF 244
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 91/164 (55%), Gaps = 11/164 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL + G+ + WY+AG+ E+ FA TL + QL LMG+ E +R+ D +
Sbjct: 110 MLAVAGILLPEWFESLGLIQNFSWYDAGSREY-FADPTTLLVAQLALMGWVEGRRWADLV 168
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL----GLAKDIRNAREWKLKEIKNGRL 116
+PGS + + A + GYPGG +P+ G + + R KEIKNGRL
Sbjct: 169 NPGSVDVDLKLPHKKKAKADV--GYPGGFWFDPMMWGRGSPEPVMVLRT---KEIKNGRL 223
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
AM+A +G++ QA T GP++N+ H++DP H I + SGS
Sbjct: 224 AMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAFS-SGS 266
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV-- 43
M G++ +LL + GI PVW++ G + F+ A + + ++
Sbjct: 147 MLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIVIAI 206
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q+LLM E RY +E LEP YPGG L +P
Sbjct: 207 CQVLLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDP 247
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD E+K+KEIKNGRLAMVA +G ++QA+VT GP+ N+ EHLSDP H I+
Sbjct: 248 LGLSKDPVAFEEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
Query: 154 TL 155
Sbjct: 308 PF 309
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV-- 43
M G++ +LL + G+ PVW++ G + F+ A + + ++
Sbjct: 158 MLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAI 217
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGG L +P
Sbjct: 218 CQALLMVGPEYARY-------------------CGIEALEPLGLYLPGDINYPGGALFDP 258
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD + K+KEIKNGRLAMVA LG ++QA+VT GPI N++EHLSDP H I+
Sbjct: 259 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
Query: 154 TL 155
+
Sbjct: 319 SF 320
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 83/156 (53%), Gaps = 4/156 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GIL +LL G E WY+AG E+ F TLF+VQ+ LMG+ E +R+ D +
Sbjct: 106 MLAVFGILVPELLERIGYIENFSWYDAGTREY-FVDPTTLFVVQMGLMGWVEGRRWADIV 164
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMV 119
+PGS E + + GYPGG +P+ + + KEIKNG LAM+
Sbjct: 165 NPGSVDIEPKVPHVTNPKPDV--GYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGGLAML 222
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
A +G + QA T GPI+N++ HL+DP H I
Sbjct: 223 AFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAF 258
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G++ +LL + GI PVW++ G + + + L I L + G + +
Sbjct: 155 MLAALGVVIPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAG---GQGVIV 211
Query: 59 YISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLK 109
+ G + +E LEP YPGG L +PLGL+KD E K+K
Sbjct: 212 IAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVK 271
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
EIKNGRLAMVA LG ++QA+VT GP+ N++EHLSDP H I+ +
Sbjct: 272 EIKNGRLAMVAWLGFYLQAAVTGKGPVQNLVEHLSDPLHNNILSSF 317
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 94 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 153
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 154 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 205
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 206 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 237
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 167 GLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|211953347|gb|ACJ13835.1| chlorophyll binding protein [Helianthus annuus]
Length = 116
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 41 FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-D 99
FI++L+ +G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGS 58
Query: 100 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+E + KEIKNGRLAM+A++G + QA T GPIDN+ HL+DP H TI
Sbjct: 59 PAKLKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 114
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 83/152 (54%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D + E K+KEIKNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPESFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 89/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTRTLFIV-- 43
M G++ +LL + G+ PVW++ G + F+ A + + ++
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAI 210
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGG L +P
Sbjct: 211 CQALLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDP 251
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD + K+KEIKNGRLAMVA LG ++QA+VT GP+ N++EHLSDP H I+
Sbjct: 252 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILS 311
Query: 154 TL 155
+
Sbjct: 312 SF 313
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|211953323|gb|ACJ13823.1| chlorophyll binding protein [Helianthus annuus]
gi|211953325|gb|ACJ13824.1| chlorophyll binding protein [Helianthus annuus]
gi|211953327|gb|ACJ13825.1| chlorophyll binding protein [Helianthus annuus]
gi|211953329|gb|ACJ13826.1| chlorophyll binding protein [Helianthus annuus]
gi|211953331|gb|ACJ13827.1| chlorophyll binding protein [Helianthus annuus]
gi|211953333|gb|ACJ13828.1| chlorophyll binding protein [Helianthus annuus]
gi|211953335|gb|ACJ13829.1| chlorophyll binding protein [Helianthus annuus]
gi|211953337|gb|ACJ13830.1| chlorophyll binding protein [Helianthus annuus]
gi|211953339|gb|ACJ13831.1| chlorophyll binding protein [Helianthus annuus]
gi|211953341|gb|ACJ13832.1| chlorophyll binding protein [Helianthus annuus]
gi|211953349|gb|ACJ13836.1| chlorophyll binding protein [Helianthus annuus]
gi|211953351|gb|ACJ13837.1| chlorophyll binding protein [Helianthus annuus]
gi|211953353|gb|ACJ13838.1| chlorophyll binding protein [Helianthus annuus]
gi|211953355|gb|ACJ13839.1| chlorophyll binding protein [Helianthus annuus]
gi|211953357|gb|ACJ13840.1| chlorophyll binding protein [Helianthus annuus]
gi|211953359|gb|ACJ13841.1| chlorophyll binding protein [Helianthus annuus]
gi|211953361|gb|ACJ13842.1| chlorophyll binding protein [Helianthus annuus]
gi|211953363|gb|ACJ13843.1| chlorophyll binding protein [Helianthus annuus]
gi|211953365|gb|ACJ13844.1| chlorophyll binding protein [Helianthus annuus]
gi|211953367|gb|ACJ13845.1| chlorophyll binding protein [Helianthus annuus]
gi|211953369|gb|ACJ13846.1| chlorophyll binding protein [Helianthus annuus]
gi|211953371|gb|ACJ13847.1| chlorophyll binding protein [Helianthus annuus]
gi|211953373|gb|ACJ13848.1| chlorophyll binding protein [Helianthus annuus]
gi|211953375|gb|ACJ13849.1| chlorophyll binding protein [Helianthus annuus]
gi|211953377|gb|ACJ13850.1| chlorophyll binding protein [Helianthus petiolaris]
gi|211953379|gb|ACJ13851.1| chlorophyll binding protein [Helianthus petiolaris]
Length = 116
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 3/116 (2%)
Query: 41 FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-D 99
FI++L+ +G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGS 58
Query: 100 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+E + KEIKNGRLAM+A++G + QA T GPIDN+ HL+DP H TI
Sbjct: 59 PAKLKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 114
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTR---TLFI 42
M G++ +LL + G+ PVW++ G + F+ A + + I
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 60
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGGPL +P
Sbjct: 61 CQALLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGPLFDP 101
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD + K+KEIKNGRLAMVA G ++QA+VT GP+ N++EHLSDP + I+
Sbjct: 102 LGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 161
Query: 154 TL 155
+
Sbjct: 162 SF 163
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 89/183 (48%), Gaps = 44/183 (24%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVE--------------FKFASTRTLFIV-- 43
M GV G L +LL + G+ PVW++ GA + F+ A + + ++
Sbjct: 232 MLGVVGCLVPELLALRGVDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAA 291
Query: 44 -QLLLMGFAETKRYMDYIS--------PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPL 94
Q +LMG E RY+ S PG Q YPGG +PL
Sbjct: 292 CQAVLMGGPEYARYVGIRSLEPVGVFLPGDQN------------------YPGGGPFDPL 333
Query: 95 GLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
A D E +KE+KNGRLAM+AMLG FVQA+VT VGP+ N+L+ ++DP H I
Sbjct: 334 NYAADADGFVEQAVKEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPAHNNIFWN 393
Query: 155 LAN 157
LA+
Sbjct: 394 LAH 396
>gi|40455722|gb|AAR85970.1| type III chlorophyll a/b-binding protein [Nicotiana tabacum]
Length = 85
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 54/74 (72%)
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
+P YPGGP NPLG KD ++ ++ KLKE+KNGRLAM+A+LG F+Q VT VGP N+L+
Sbjct: 9 DPAYPGGPFFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLD 68
Query: 142 HLSDPWHKTIIQTL 155
HL+DP + I+
Sbjct: 69 HLADPVNNNILTNF 82
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 1 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 60
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 61 VLMGLI-------EGYRVGGGPLGEGLDPLYPGGAF-DPLGLADDPEAFAELKVKEIKNG 112
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 113 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 144
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 83/161 (51%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 84 MLGALGCVFPEVLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 143
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 144 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 186
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 187 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 227
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 88/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE-------------FKFASTR---TLFI 42
M G++ +LL + G+ PVW++ G + F+ A + + I
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVVIAI 211
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGGPL +P
Sbjct: 212 CQALLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGPLFDP 252
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LGL+KD + K+KEIKNGRLAMVA G ++QA+VT GP+ N++EHLSDP + I+
Sbjct: 253 LGLSKDPVAFEDLKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 312
Query: 154 TL 155
+
Sbjct: 313 SF 314
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 83/170 (48%), Gaps = 45/170 (26%)
Query: 11 DLLRVTGIRELPVWYEAGAVE-------------FKFASTRTLFIV---QLLLMGFAETK 54
DL V E PVW++ G + F+ A + + ++ Q LLM E
Sbjct: 171 DLFEVVHFVE-PVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIVIAICQALLMVGPEYA 229
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNARE 105
RY +E LEP YPGG L +PLGL+KD +
Sbjct: 230 RY-------------------CGIEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFED 270
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
K+KEIKNGRLAMVA LG ++QA+VT GPI N++EHLSDP H I+ +
Sbjct: 271 LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILSSF 320
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 83/161 (51%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 105 MLGALGCVFPELLSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 165 VLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLYDHLADP 248
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 94/170 (55%), Gaps = 17/170 (10%)
Query: 1 MAGVAGILFTDLLRVTGIRELP-----VWYEAGAVEFK-----FASTRTLFIVQLLLMGF 50
M GVAG++ ++L GI +P VW++AG + + +AS T+F + LM
Sbjct: 104 MLGVAGMVAPEVLGGMGI--IPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNI 161
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
AE +R DY +PGS K+ F GLE L G +P YPGG N + + ++ K K
Sbjct: 162 AELRRAQDYWNPGSMGKQ-DFAGLEKMLGGSGDPAYPGG-FFNFMKQGE--KDMAAMKTK 217
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSG 159
EIKNGRLAM+A G QA +T GP+ N+++H+ DP+ ++ + G
Sbjct: 218 EIKNGRLAMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHNLLVNFSQIG 267
>gi|18539449|gb|AAL74395.1|AF359127_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
gi|18539451|gb|AAL74396.1|AF359128_1 LHC I type IV chlorophyll binding protein [Pinus sylvestris]
Length = 122
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 78/127 (61%), Gaps = 8/127 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 2 MLGVAGMLIPEVLTSIGLINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 60
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F + +L E GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 61 YPGSVNQDPLF--KQYSLPPNEVGYPGG-IFNPLNFSPSM----EAKEKELANGRLAMLA 113
Query: 121 MLGIFVQ 127
LG VQ
Sbjct: 114 FLGFVVQ 120
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G LF +LL G++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 83/152 (54%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILAKNGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+L+HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPVENLLDHLADP 249
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/95 (53%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L +L+ VT +P WYEAG V + FA T TL +V +LMGF ETKRY D +
Sbjct: 104 MLGVAGVLGQELVHVTN-GSIPHWYEAGKVSY-FADTPTLIVVMHILMGFVETKRYFDIV 161
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 95
+PGSQ + G F G E + G PGYPGG L +PLG
Sbjct: 162 NPGSQAQPG-FAGAERLMLGTSPGYPGGILFDPLG 195
>gi|315140122|gb|ADT81035.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140124|gb|ADT81036.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140126|gb|ADT81037.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140128|gb|ADT81038.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140130|gb|ADT81039.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140132|gb|ADT81040.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140134|gb|ADT81041.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
gi|315140136|gb|ADT81042.1| LHC I type IV chlorophyll binding protein [Juniperus przewalskii]
Length = 128
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 8 MLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 66
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F +L + GYPGG + NPL + + E K KE+ NGRLAM+A
Sbjct: 67 YPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELANGRLAMLA 119
Query: 121 MLGIFVQ 127
LG VQ
Sbjct: 120 FLGFVVQ 126
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL TG++ VW++AGA F + L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 167 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|211953343|gb|ACJ13833.1| chlorophyll binding protein [Helianthus annuus]
gi|211953345|gb|ACJ13834.1| chlorophyll binding protein [Helianthus annuus]
Length = 116
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Query: 41 FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-D 99
FI++L+ +G+AE +R+ D I PG + F L G + GYPGG +PLG
Sbjct: 1 FIIELIFIGWAEGRRWADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGTGS 58
Query: 100 IRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+E + KEIKNG LAM+A++G + QA T GPIDN+ HL+DP H TI
Sbjct: 59 PAKLKELRTKEIKNGSLAMLAVMGAWFQAIYTGTGPIDNLFAHLADPGHATIFAAF 114
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F +A L Q +L +A
Sbjct: 107 MLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P PGG +PLGLA D E K+KEIKNG
Sbjct: 167 VLMGLI-------EGYRVGGGTLGEGLDPLLPGG-AFDPLGLADDPEACAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 250
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 88/182 (48%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTRTLFIV-- 43
M G L ++L ++G PVW+ G + K FA + + ++
Sbjct: 173 MLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGGQGVLVIAF 232
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q +LM E RY +E LEP YPGG L +P
Sbjct: 233 CQAILMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGILFDP 273
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
L L+KD + E K+KEIKNGRLAMVA LG ++QA++T GP++N++EH+SDP H +
Sbjct: 274 LNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNLFS 333
Query: 154 TL 155
TL
Sbjct: 334 TL 335
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 44/159 (27%)
Query: 22 PVWYEAGAVEFK-------------FASTRTLFIV---QLLLMGFAETKRYMDYISPGSQ 65
PVW+ G + K FA ++ + ++ Q LLM E RY
Sbjct: 187 PVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLVIAICQALLMVGPEYARY--------- 237
Query: 66 TKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
+E LEP YPGGPL +PL L+ D E K+KEIKNGRL
Sbjct: 238 ----------CGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVKEIKNGRL 287
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
AMVA LG + QA++T GP+ N++EH+SDP+H ++ L
Sbjct: 288 AMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNNLLCVL 326
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 83/152 (54%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA +T GPI+N+L+HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIITGKGPIENLLDHLADP 249
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 87/173 (50%), Gaps = 21/173 (12%)
Query: 1 MAGVAGILFTDLL-------RVTGIRELPVWYEAG-----AVEFKFA-STRTLFIVQLLL 47
M G AG L + L + TG+ +W++ G + F + LF VQ+++
Sbjct: 58 MLGAAGCLAPEYLAHEKVIPKATGL----LWFKTGFLPQASAGFDYGLPLGVLFAVQMVM 113
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPG---YPGGPLLNPLGLAKDIRNAR 104
MG AE R +YI+PGS + GLE + G YPGG + NPLGL + R
Sbjct: 114 MGVAEGLRGAEYIAPGS-LRNNKLLGLEKLIATTRAGSAAYPGGLMFNPLGLGEKPAAMR 172
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
E + EI++GRLAM+A LG QA VT GP DN HL +P ++ L N
Sbjct: 173 EMQQAEIRHGRLAMLACLGYAAQAVVTGRGPYDNWNRHLENPEENNVLSLLGN 225
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 3 GVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLL 46
G GIL +LL + G++ PVW++AGA F L VQ++
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
LMG AE R G E L+ L+ YPGGP +PLGLA D E
Sbjct: 153 LMGLAEAYRANG--------------GSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAEL 197
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + LG FVQA VT GP+ N+ +HL+DP
Sbjct: 198 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 84/169 (49%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-------------FKFASTRTLFIVQLLL 47
M G+ G L ++ GI +LP WYEAGAV ++ +F LLL
Sbjct: 410 MLGLVGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLL 469
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 107
E R+ I+P +++ E + YPGGP +PL L + E K
Sbjct: 470 FLPIEAWRWNGQIAPEAKSAERT-------------TYPGGPF-DPLKLGA----SPELK 511
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LKEIKNGRLAMV M G + Q+ VT GP+ N+ HL+DP H ++ T+A
Sbjct: 512 LKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 560
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 78/153 (50%), Gaps = 31/153 (20%)
Query: 17 GIRELPVWYEAGAVE-------------FKFASTRTLFIVQLLLMGFAETKRYMDYISPG 63
GI +LP WYEAGAV ++ +F LLL E R+ I+P
Sbjct: 8 GIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPD 67
Query: 64 SQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 123
+++KE + YPGGP +PL L + E KLKEIKNGRLAMV M G
Sbjct: 68 AKSKEWT-------------TYPGGPF-DPLKLGA----SPELKLKEIKNGRLAMVGMFG 109
Query: 124 IFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+ Q+ VT GP+ N+ HL+DP H ++ T+A
Sbjct: 110 FWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 142
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 83/169 (49%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-------------FKFASTRTLFIVQLLL 47
M G+ G L ++ GI +LP WY+A V ++ + + LLL
Sbjct: 201 MLGLVGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVSFIALSTLLL 260
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 107
MG E R+ ++ +++ E + YPGGP +PL L + E K
Sbjct: 261 MGPVEAWRWNGALASEAKSAERT-------------TYPGGPF-DPLKLGA----SPELK 302
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LKEIKNGRLAMV M G + Q+ VT GP+ N+ HL+DP H ++ T+A
Sbjct: 303 LKEIKNGRLAMVGMFGFWAQSYVTGEGPLANLAAHLADPAHNNLLNTVA 351
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134
YPG +PLGLAKD + + + E+ +GR AM+ ++G V ++G
Sbjct: 377 YPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLG 426
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AG+ F + L Q +L +A
Sbjct: 105 MLGALGCIFPELLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQV 164
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M +I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 165 VLMGFI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 216
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 248
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + L Q +L +A
Sbjct: 87 MLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 146
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 147 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 198
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 199 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 230
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 86/182 (47%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK-------------FASTR---TLFI 42
M G L ++L + G PVW+ G + K FA ++ + I
Sbjct: 162 MLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAI 221
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q LLM E RY +E LEP YPGG L +P
Sbjct: 222 CQALLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGALFDP 262
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
L L+ D E K+KEIKNGRLAMVA LG +VQA++T GP+ N+++H+SDP+H ++
Sbjct: 263 LNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLLG 322
Query: 154 TL 155
+L
Sbjct: 323 SL 324
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMTSMFGFFVQAIVTGKGPVENLYDHVADP 249
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + L Q +L +A
Sbjct: 36 MLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 95
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 96 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 147
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 148 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 179
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 3 GVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLL 46
G GIL +LL + G++ PVW++AGA F L VQ++
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
LMG AE R G E L+ L+ YPGGP +PLGLA D E
Sbjct: 153 LMGLAEAYRANG--------------GSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAEL 197
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + LG FVQA VT GP+ N+ +HL+DP
Sbjct: 198 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 81/161 (50%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF-----KFASTRTL---------FIVQL 45
M G G + +LL G+ VW++AGA F + +L Q+
Sbjct: 92 MLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQV 151
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R G LEGL+ YPGGP +PLGLA D E
Sbjct: 152 ILMGGAEAYRAA---------------GEGPGLEGLDSLYPGGPF-DPLGLADDPDTFSE 195
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 196 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 236
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 82/160 (51%), Gaps = 31/160 (19%)
Query: 3 GVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLL 46
G GIL +LL + G++ PVW++AGA F L VQ++
Sbjct: 93 GALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVV 152
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
LMG AE R G E L+ L+ YPGGP +PLGLA D E
Sbjct: 153 LMGLAEAYRANG--------------GSEGFLDDLDTLYPGGPF-DPLGLADDPDTFAEL 197
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + LG FVQA VT GP+ N+ +HL+DP
Sbjct: 198 KVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 83/161 (51%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G GI+F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 106 MLGALGIVFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM ++ G FVQA VT GPI N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSVFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 65/123 (52%), Gaps = 28/123 (22%)
Query: 42 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLN 92
I Q LLM E RY +E LEP YPGG L +
Sbjct: 215 ICQFLLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGVLFD 255
Query: 93 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
PLGL+KD E K+KEIKNGRLAMVA LG +VQA VT GP++N+L+HL DP H +
Sbjct: 256 PLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAV 315
Query: 153 QTL 155
++
Sbjct: 316 TSI 318
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 65/123 (52%), Gaps = 28/123 (22%)
Query: 42 IVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLN 92
I Q LLM E RY +E LEP YPGG L +
Sbjct: 215 ICQFLLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGVLFD 255
Query: 93 PLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
PLGL+KD E K+KEIKNGRLAMVA LG +VQA VT GP++N+L+HL DP H +
Sbjct: 256 PLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPLHNNAV 315
Query: 153 QTL 155
++
Sbjct: 316 TSI 318
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 103 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 162
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 163 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTAAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 246
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + L Q +L +A
Sbjct: 67 MLGALGCVFPELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 126
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 127 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 178
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 179 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 210
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 84/169 (49%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL--------------FIVQ 44
M GV G F + + G PVW++AGA F L F+
Sbjct: 894 MLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLST 953
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L+LMG E R S GS G+ L+P YPGGP +PLGLA D
Sbjct: 954 LVLMGAVEAYR-----SAGSVGDFGA---------DLDPLYPGGPF-DPLGLADDPEAFL 998
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVA+ G FVQ +T GP++N ++HL+DP+ I Q
Sbjct: 999 ELKVKEVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQ 1047
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQ 44
M G G++ +LL G+ E VWY+AGA F L F+
Sbjct: 191 MLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLST 250
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L +MG E RY + FG E L+ YPGGP +PLGLA D
Sbjct: 251 LAIMGAVEAYRYGGGVGD---------FGRE-----LDTLYPGGPF-DPLGLANDPDALA 295
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+DP I
Sbjct: 296 ELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 344
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQ 44
M G G++ +LL G+ E VWY+AGA F L F+
Sbjct: 652 MLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLST 711
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L +MG E RY + G +E L+ YPGGP +PLGLA D
Sbjct: 712 LAIMGAVEAYRYGGGV--GDSGRE------------LDTLYPGGPF-DPLGLANDPDALA 756
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+DP I
Sbjct: 757 ELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 805
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 15/113 (13%)
Query: 41 FIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDI 100
F+ L+LMG E R S GS G+ L+P YPGGP +PLGLA D
Sbjct: 10 FLSTLVLMGAVEAYR-----SAGSVGDFGA---------DLDPLYPGGPF-DPLGLADDP 54
Query: 101 RNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVA+ G VQ +T GP++N ++HL+DP+ + Q
Sbjct: 55 EAFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDHLTDPFENNLFQ 107
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGG + +PLGL+KD E K+KE+KNGRLAM+AMLG+FVQA VT P++N+ HL+
Sbjct: 502 YPGG-VFDPLGLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLA 560
Query: 145 DP 146
+P
Sbjct: 561 NP 562
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + L Q +L +A
Sbjct: 105 MLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQV 164
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KEIKNG
Sbjct: 165 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNG 216
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPIENLADHIADP 248
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLAKNGVKFGESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 101 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 160
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 161 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTAAE 203
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 204 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 244
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 101 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 160
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 161 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTAAE 203
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 204 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 244
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILAKNGVKFGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLA +M G FVQA VT GP++N+L+HL+DP
Sbjct: 218 RLATFSMFGFFVQAIVTGKGPVENLLDHLADP 249
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 32 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 91
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 92 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGGAF-DPLGLADDPDTAAE 134
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 135 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 175
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PL LA+D E
Sbjct: 166 VLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PL LA+D E
Sbjct: 166 VLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PL LA+D E
Sbjct: 166 VLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PL LA+D E
Sbjct: 166 VLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PL LA+D E
Sbjct: 166 VLMGFIEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 249
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDAIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+++HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADP 249
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + L Q +L +A
Sbjct: 75 MLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQV 134
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 135 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPEAFAELKVKELKNG 186
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 187 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 218
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 79/147 (53%), Gaps = 30/147 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M G G +F +LL TG++ VW++A ++ Q++LMG E R
Sbjct: 107 MLGALGCVFPELLAKTGVKFGEAVWFKA------------IWASQVVLMGLIEGYRV--- 151
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
G G EGL+P YPGG +PLGLA D E K+KEIKNGRLAM
Sbjct: 152 --------GGGPLG-----EGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMF 197
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDP 146
+M G FVQA VT GPI+N+ +HL+DP
Sbjct: 198 SMFGFFVQAIVTGKGPIENLFDHLADP 224
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 164 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVTDP 247
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D + E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDSFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 60 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 119
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 120 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAE 162
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 163 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 203
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQ 44
M G G++ +LL G+ E VWY+AGA F L F+
Sbjct: 154 MLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLST 213
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L +MG E RY + FG E L+ YPGGP +PLGLA D
Sbjct: 214 LAIMGAVEAYRYGGGVGD---------FGRE-----LDTLYPGGPF-DPLGLANDPDALA 258
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+DP I
Sbjct: 259 ELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 307
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VWY+AGA F L F+ L +MG E RY +
Sbjct: 408 VWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGD------ 461
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
FG E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ
Sbjct: 462 ---FGRE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQP 512
Query: 129 SVTHVGPIDNILEHLSDPWHKTIIQ 153
VT GP++N+ HL+DP I
Sbjct: 513 LVTKAGPVENLTFHLADPSSNNIFS 537
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+
Sbjct: 5 YPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLA 63
Query: 145 DPWHKTIIQ 153
DP I
Sbjct: 64 DPSSNNIFS 72
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L GI+ VW++AGA F S ++ Q+
Sbjct: 60 MLGALGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 119
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 120 VLMGFIEGYR----------------VGGGPLGEGLDIIYPGG-AFDPLGLADDPDTAAE 162
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 163 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHIADP 203
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 76/159 (47%), Gaps = 44/159 (27%)
Query: 22 PVWYEAGAVE-------------FKFASTR---TLFIVQLLLMGFAETKRYMDYISPGSQ 65
PVW+ G + F FA ++ + I Q LLM E RY
Sbjct: 189 PVWWRVGYSKLKGDTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARY--------- 239
Query: 66 TKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
+E LEP YPGG L +PL L+KD E K+KEIKNGRL
Sbjct: 240 ----------CGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRL 289
Query: 117 AMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
AMVA LG ++QA+ T GP+ N+L+HL+DP+H ++
Sbjct: 290 AMVAWLGFYIQAAATGKGPVQNLLDHLADPFHNNLLSIF 328
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 164 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D + E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDSFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQ 44
M G G++ +LL G+ E VWY+AGA F L F+
Sbjct: 102 MLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLST 161
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L +MG E RY + FG E L+ YPGGP +PLGLA D
Sbjct: 162 LAIMGAVEAYRYGGGVGD---------FGRE-----LDTLYPGGPF-DPLGLANDPDALA 206
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+DP I
Sbjct: 207 ELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFS 255
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AGA F S ++ Q+
Sbjct: 8 MLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQV 67
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 68 VLMGFVEGYR----------------IGGGPLGEGLDPLYPGGAF-DPLGLADDPDAFAE 110
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP+ N+ +HL+DP
Sbjct: 111 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHLADP 151
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 77/151 (50%), Gaps = 29/151 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M V GIL +LL VT P WYEAGA E+ ST L ++ ++MGF E KRY +
Sbjct: 78 MMAVTGILGQELLGVT-----PSWYEAGAKEYDIPST-PLTAIEFIVMGFLEIKRYQGFK 131
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+ G+ SF +P GL N+ KE+KNGRLAMVA
Sbjct: 132 TTGTSGFINSF------------------PFDPAGL-----NSASMATKEVKNGRLAMVA 168
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
+G VQA VT PI+ + +HLSDP+ K I
Sbjct: 169 FVGFAVQALVTRTQPIEGLTKHLSDPFGKNI 199
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP+ N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTDKGPVQNLYDHVADP 249
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 94 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 153
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 154 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAE 196
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 197 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 237
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/169 (38%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQ 44
M G G++ +LL G+ E VWY+AGA F L F+
Sbjct: 448 MLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLST 507
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L +MG E RY + FG E L+ YPGGP +PLGLA D
Sbjct: 508 LAIMGAVEAYRYGGGVGD---------FGRE-----LDTLYPGGPF-DPLGLANDPDALA 552
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
E K+KE+KNGRLAMVAMLG +VQ VT GP++N+ HL+DP I
Sbjct: 553 ELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFS 601
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/145 (40%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VWY+AGA F L F+ L +MG E RY +
Sbjct: 11 VWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGD------ 64
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
FG E L+ YPGGP +PLGLA D E K+KE+KNGRLAMVAMLG +VQ
Sbjct: 65 ---FGRE-----LDTLYPGGPF-DPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQP 115
Query: 129 SVTHVGPIDNILEHLSDPWHKTIIQ 153
VT GP++N+ HL+DP I
Sbjct: 116 LVTKAGPVENLTFHLADPSANNIFS 140
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGG + +PLGL+KD E K+KE+KNGRLAM+AMLG+FVQA VT P++N+ HL+
Sbjct: 298 YPGG-VFDPLGLSKDPAAFAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENLSAHLA 356
Query: 145 DP 146
+P
Sbjct: 357 NP 358
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 165 VLMGFVEGYR----------------VGGGPLGEGLDAIYPGG-AFDPLGLADDPDAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 248
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AG+ F + + L Q +L +A
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWACQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M +I EG G EGL+P YPGG +PL LA+D E K+KE+KNG
Sbjct: 167 VLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 250
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F ++L G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP+ N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLYDHVADP 249
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G + +LL G+ VW++AGA F S Q+
Sbjct: 87 MLGALGCVTPELLAKNGVSFGEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQV 146
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R EG +EGL+ YPGGP +PLGLA D E
Sbjct: 147 ILMGGAEAYR---------ANGEGP------GVEGLDSLYPGGPF-DPLGLADDPDTFAE 190
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 191 LKTKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 231
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 164 VLMGFIEGYR----------------VGGGPLGEGLDKIYPGG-AFDPLGLADDPDTAAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDHVADP 247
>gi|37927438|gb|AAP69815.1| chlorophyll a/b-binding protein, partial [Vitis vinifera]
Length = 96
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 62/100 (62%), Gaps = 7/100 (7%)
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+ D +PGS ++ F +L E GYPGG + NPL A E K KE+ NGR
Sbjct: 1 WQDIKNPGSVNQDPIF--KNYSLPPNEVGYPGG-IFNPLNFAP----TEEAKEKELANGR 53
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
LAM+A LG VQ +VT GP DN+L+H+SDPWH TIIQTL
Sbjct: 54 LAMLAFLGFIVQHNVTGKGPFDNLLQHISDPWHNTIIQTL 93
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PL LA+D E K+KE+KNG
Sbjct: 167 VLMGLI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHLADP 250
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G L +LL G+ VW++AGA F S + Q+
Sbjct: 76 MLGALGCLTPELLAKNGVSFGEAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQV 135
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R Y PG EGL+ YPGG +PLGLA D E
Sbjct: 136 LLMGAIEGYRV--YGGPGG--------------EGLDKVYPGGDYFDPLGLADDPDTFAE 179
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ HL+DP
Sbjct: 180 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLESHLADP 220
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M +I EG G EGL+P YPGG +PL LA+D E K+KE+KNG
Sbjct: 167 VLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 250
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MA VAGIL +++R WY AG+ L + M + E +R+ D
Sbjct: 78 MAAVAGILVQEIVRPDVF-----WYSAGSQVESPLGPLGLLAFEFFCMHWVELRRWQDLR 132
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F + L EPGYPGG + P + D+ E K+KEIKNGRLAM+A
Sbjct: 133 KPGSVDQDPIF--SQYKLPPHEPGYPGG-VFAPF-IPGDLA---ELKVKEIKNGRLAMLA 185
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+G + A VT GPI + EHL+DPW TI A
Sbjct: 186 FVGFVMAAQVTGKGPIAALQEHLADPWGTTIFSKAA 221
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L GI+ VW++AGA F S ++ VQ+
Sbjct: 104 MLGALGCVFPEILSKNGIKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D A E
Sbjct: 164 VLMGFIEGYR----------------VGGGPLDEGLDIIYPGG-AFDPLGLADDPDTAAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ + L DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLFDQLRDP 247
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G L ++L + G P+W+ G + K + L I L L G ++ +
Sbjct: 170 MLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG---SQGVIV 226
Query: 59 YISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLK 109
+ G + +E LEP YPGG L +PL L+KD E K+K
Sbjct: 227 IAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVK 286
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
EIKNGRLAMVA LG + QA++T GP+ N+L+H++DP+H + L +S S
Sbjct: 287 EIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFS 337
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 79/162 (48%), Gaps = 30/162 (18%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKF--------------ASTRTLFIVQ 44
M G G + L R G++ P+W++AGA F S + Q
Sbjct: 42 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 101
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
+LLMG E R T G F E L+ YPGGP +PLGLA D
Sbjct: 102 VLLMGAVEAYR-------AGNTAPGQFG------EDLDRLYPGGPF-DPLGLADDPDTFA 147
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAMVAMLG + QA VT GP++N L HL DP
Sbjct: 148 ELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDP 189
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 79/162 (48%), Gaps = 30/162 (18%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKF--------------ASTRTLFIVQ 44
M G G + L R G++ P+W++AGA F S + Q
Sbjct: 526 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 585
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
+LLMG E R T G F E L+ YPGGP +PLGLA D
Sbjct: 586 VLLMGAVEAYR-------AGNTAPGQFG------EDLDRLYPGGPF-DPLGLADDPDTFA 631
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM+AMLG + QA VT GP++N L HL DP
Sbjct: 632 ELKVKEIKNGRLAMMAMLGFYAQAIVTGEGPVENWLYHLQDP 673
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 33/164 (20%)
Query: 1 MAGVAGILFTDLLRVT---GIRELPVWYEAGAVEF-----------KFASTRTLFIV--- 43
M G G++F + L I E PVW++AGA F + +++ ++
Sbjct: 283 MLGALGVVFPEYLSRNFDIPIAE-PVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGT 341
Query: 44 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 103
Q+LLMG AE R + GL + L+ YPGGP +PLGLA D
Sbjct: 342 QVLLMGAAEAYRTGN--------------GLGNFGKDLDSLYPGGPF-DPLGLANDPDTL 386
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
E K+KEIKNGRLAM AM G +VQA VT P++N+ HL+ P+
Sbjct: 387 AELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPF 430
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 163
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 164 VLMGFV-------EGYRIGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNG 215
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 216 RLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 163
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 164 VLMGFV-------EGYRVGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNG 215
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 216 RLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATRV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP+ N+ +H++DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPVQNLYDHVADP 249
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMD 58
M G L ++L + G P+W+ G + K + L I L L G ++ +
Sbjct: 170 MLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAG---SQGVIV 226
Query: 59 YISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLK 109
+ G + +E LEP YPGG L +PL L+KD E K+K
Sbjct: 227 IAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAEAFEELKVK 286
Query: 110 EIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
EIKNGRLAMVA LG + QA++T GP+ N+L H++DP+H + L +S S
Sbjct: 287 EIKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFLSLLNSSFS 337
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 89/183 (48%), Gaps = 46/183 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVE--------------FKFASTRTLFIV- 43
M G G + +LL + G+ EL PVW++ GA + F+ A + + ++
Sbjct: 110 MLGFVGCMVPELLALRGV-ELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIA 168
Query: 44 --QLLLMGFAETKRYMDYIS--------PGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 93
Q +LMG E RY+ S PG Q YPGG +P
Sbjct: 169 ACQAVLMGGPEYARYVGIRSLEPVGVFLPGDQN------------------YPGGGPFDP 210
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
L A D + ++EIKNGRLAMVAMLG+FVQA+VT GP+ N++E +SDP + I
Sbjct: 211 LNYAADADGFVDQAVREIKNGRLAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFT 270
Query: 154 TLA 156
+A
Sbjct: 271 NVA 273
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 79/162 (48%), Gaps = 30/162 (18%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKF--------------ASTRTLFIVQ 44
M G G + L R G++ P+W++AGA F S + Q
Sbjct: 299 MLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQ 358
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
+LLMG E R T G F E L+ YPGGP +PLGLA D
Sbjct: 359 VLLMGAVEAYR-------AGNTAPGQFG------EDLDRLYPGGPF-DPLGLADDPDTFA 404
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAMVAMLG + QA VT GP++N L HL DP
Sbjct: 405 ELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPVENWLYHLQDP 446
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 84/164 (51%), Gaps = 33/164 (20%)
Query: 1 MAGVAGILFTDLLRVT---GIRELPVWYEAGAVEF-----------KFASTRTLFIV--- 43
M G G++F + L I E PVW++AGA F + +++ ++
Sbjct: 56 MLGALGVVFPEYLSRNFDIPIAE-PVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGT 114
Query: 44 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 103
Q+LLMG AE R + GL + L+ YPGGP +PLGLA D
Sbjct: 115 QVLLMGAAEAYRTGN--------------GLGNFGKDLDSLYPGGPF-DPLGLANDPDTL 159
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
E K+KEIKNGRLAM AM G +VQA VT P++N+ HL+ P+
Sbjct: 160 AELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPF 203
>gi|45269111|gb|AAS56914.1| CAB-like protein [Ipomoea nil]
Length = 96
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 53/69 (76%)
Query: 87 GGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
GGP+ NPLG KD ++ ++ KLKE+KNGRLAM+A+LG F+QA VT VGP N+L+HL+DP
Sbjct: 25 GGPIFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADP 84
Query: 147 WHKTIIQTL 155
+ I+ L
Sbjct: 85 VNNNILTNL 93
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 106 MLGALGCVFPEVLSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGLI-------EGYRVGGGPLGEGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HLSDP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIENLFDHLSDP 249
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 1 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 60
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M +I EG G EGL+P YPGG +PL LA+D E K+KE+KNG
Sbjct: 61 VLMGFI-------EGYRIGGGPLGEGLDPLYPGGAF-DPLNLAEDPEAFSELKVKELKNG 112
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 113 RLAMFSMFGFFVQAIVTGKGPIENLFDHIADP 144
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGEGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 249
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 107 MLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M +I EG G EGL+P YPGG +PL LA+D E K+KE+KNG
Sbjct: 167 VLMGFI-------EGYRIGGGPLGEGLDPLYPGG-AFDPLNLAEDPEAFSELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM M G FVQA VT GPI+N+ +H++DP
Sbjct: 219 RLAMFPMFGFFVQAIVTGKGPIENLFDHIADP 250
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGLI-------EGYRVGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI N+ +H++DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDP 249
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 203
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T
Sbjct: 204 --NAELDSEKRLYPGGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 261
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 262 KGPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 164 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA V GPI+N+ +H++DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVRGKGPIENLFDHVTDP 247
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 82/161 (50%), Gaps = 29/161 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL GI VW++AGA F+ L VQ+
Sbjct: 25 MLGALGCITPELLAKNGIPFGEAVWFKAGAQIFQDGGLNYLGNESLVHAQSILATLAVQV 84
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG AE+ R + +PG FG E L+ YPGG +PLGLA D E
Sbjct: 85 LLMGAAESYR-ANGGAPGG-------FG-----EDLDSLYPGGAF-DPLGLADDPDTLAE 130
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ HLSDP
Sbjct: 131 LKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 171
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YP G +PLGLA D E
Sbjct: 164 VLMGFVEGYR----------------VGGGPLGEGLDKVYPSG-AFDPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGLI-------EGYRVGGGPLGEGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPVENLFDHLADP 249
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 80/151 (52%), Gaps = 14/151 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 105 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQV 164
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M +I EG G EGL+ YPGG +PLGLA D E K+KEIKNG
Sbjct: 165 VLMGFI-------EGYRVGGGPLGEGLDSIYPGG-AFDPLGLADDPEAFAELKVKEIKNG 216
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSD 145
RLAM +M G FVQA VT GPI+N+ +HL+D
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPIENLFDHLAD 247
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 81/161 (50%), Gaps = 28/161 (17%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL G+ VW++AGA F+ L VQ+
Sbjct: 85 MLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQV 144
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R + +PG FG E L+ YPGG +PLGLA D E
Sbjct: 145 ILMGAAEAYR-ANGGAPGG-------FG-----EDLDSLYPGGKFFDPLGLADDPDTLAE 191
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI N+ HL+DP
Sbjct: 192 LKVKELKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADP 232
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 33/161 (20%)
Query: 3 GVAGILFTDLLRVTGIR---ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
G GI+ ++L G+ + +W++AG+ FK L VQ+
Sbjct: 101 GALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQV 160
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
++MG AE R G +EGL+ YPGGP +PLGLA D E
Sbjct: 161 IVMGAAEGFRAN---------------GEAPGVEGLDTLYPGGPF-DPLGLADDPDTFAE 204
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM A G FVQA VT GPI N+ +HL+DP
Sbjct: 205 LKVKEIKNGRLAMFACFGFFVQAIVTGKGPIQNLEDHLADP 245
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 83/171 (48%), Gaps = 35/171 (20%)
Query: 3 GVAGILFTDLLRVTGIRELP---VWYEAGAVEFKFASTRTL--------------FIVQL 45
G G + +LL G+ +P VW++ GA FK L +VQL
Sbjct: 99 GALGCVVPELLARNGV-AMPADGVWFKVGAEIFKEGGLNYLGNENLVHAQSIVATLLVQL 157
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG+AE R G G EGL+P YPGG +PLGLA D E
Sbjct: 158 VLMGWAEGYRI-----------NGGPLG-----EGLDPLYPGG-AFDPLGLADDPDTLAE 200
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
K+KE+KNGR+AM AM G VQA VT GP++N+ +HL+ P + A
Sbjct: 201 LKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADHLAAPGTNNVFSNAA 251
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 206
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T
Sbjct: 207 --NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 265 KGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KEIKNG
Sbjct: 166 VLMGLI-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 249
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 87.0 bits (214), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 206
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T
Sbjct: 207 --NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 265 KGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE ST TL +++L++G+ E +R
Sbjct: 163 TWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 206 --NAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 264 KGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MA VAGIL +++R WY AG L V+ LM + E +R+ D
Sbjct: 79 MAAVAGILVQEIVRPDVF-----WYNAGKEVESPLGPLGLLAVEFFLMHWVEVRRWQDLR 133
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F + L E GYPGG + P + D+ E K+KEIKNGRLAM+A
Sbjct: 134 KPGSVDQDPIFS--QYKLPPHEVGYPGG-VFAPF-IPGDLA---ELKVKEIKNGRLAMLA 186
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+G + A VT GPI + EHL+DPW TI A
Sbjct: 187 FVGFVMAAQVTGKGPIAALQEHLADPWGTTIFSKAA 222
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 83/162 (51%), Gaps = 32/162 (19%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF-----------KFASTRTLFIV---Q 44
M G G +F ++L + G+ + PVW++AGA F +++ V Q
Sbjct: 106 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQ 165
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
+LLMG E R GL+ EG + YPGG +PLGLA D
Sbjct: 166 VLLMGLVEGFRIN---------------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFA 209
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL DP
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDP 251
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE ST TL +++L++G+ E +R
Sbjct: 221 TWQDAGKVELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 263
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 264 --NAELDSEKRLYPGGKFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 321
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 322 KGPLNNWATHLSDPLHTTIIDTFSSS 347
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 85/174 (48%), Gaps = 30/174 (17%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL--------------FIVQ 44
M G G +F ++L E VW++AGA F L +VQ
Sbjct: 94 MLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQ 153
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
+LLMG E R + + S FG EG + YPGG +PLGLA D
Sbjct: 154 VLLMGAVEIYR--------ANGEGPSGFG-----EGQDNLYPGG-AFDPLGLADDPDTLA 199
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
E K+KE+KNGRLAM++MLG FVQA VT GP+DN+L HL +P A++
Sbjct: 200 ELKVKELKNGRLAMMSMLGFFVQAIVTGKGPLDNLLTHLEEPGEFNFYANYAST 253
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 85/179 (47%), Gaps = 46/179 (25%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFK-------------FASTRTLFIV-- 43
M G++ +LL R G++ PVW++ G + + A + + ++
Sbjct: 183 MLAALGVVIPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAF 242
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q++LM E RY +E LEP YPGG L +P
Sbjct: 243 CQVILMLGPEYARY-------------------CGIEALEPLGIFLPGDVNYPGGALFDP 283
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
LGL KD + K+KE+KNGRLAMVA LG +VQA VT GPIDN+ + L DP H+ +
Sbjct: 284 LGLTKDAAAFEDLKVKEMKNGRLAMVAWLGFYVQALVTQKGPIDNLFDFLEDPLHQNLF 342
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F+ + L Q +L +A
Sbjct: 105 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQV 164
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 165 VLMGLI-------EGYRVGGGPLGEGLDKLYPGG-AFDPLGLADDPEAFAELKVKELKNG 216
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 248
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 85/164 (51%), Gaps = 36/164 (21%)
Query: 1 MAGVAGILFTDLL----RVTGIRELPVWYEAGAVEFKFA--------------STRTLFI 42
M G G + +LL RVT ++E PVW++AGA F S ++
Sbjct: 105 MLGALGCITPELLQKYSRVT-LKE-PVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWA 162
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 102
VQ++LMG E R GL EG + YPGG +PLGLA D
Sbjct: 163 VQVVLMGAVEAYRTN---------------GLPGVGEGGDL-YPGGKYFDPLGLADDPET 206
Query: 103 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KE+KNGRLAM +M G FVQA VT GP++N+L+HL++P
Sbjct: 207 LAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLANP 250
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 82/161 (50%), Gaps = 29/161 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL G+ VW++AGA F+ L VQ+
Sbjct: 87 MLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQV 146
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG AE+ R + +PG FG E L+ YPGG +PLGLA D E
Sbjct: 147 LLMGAAESYR-ANGGAPGG-------FG-----EDLDSLYPGG-AFDPLGLADDPDTLAE 192
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ HLSDP
Sbjct: 193 LKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 233
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 83/162 (51%), Gaps = 32/162 (19%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF-----------KFASTRTLFIV---Q 44
M G G +F ++L + G+ + PVW++AG+ F +++ V Q
Sbjct: 107 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
+LLMG E R GL+ EG + YPGG +PLGLA D
Sbjct: 167 VLLMGLVEGFRIN---------------GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFA 210
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL DP
Sbjct: 211 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDP 252
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G+ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADP 249
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 74/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 165 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQR----------------- 207
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T
Sbjct: 208 --NAELDSEKRLYPGGKYFDPLGLAADPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATG 265
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 266 KGPLNNWATHLSDPLHTTIIDTFSSS 291
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA+D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLAEDPEAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G+ VW++AG+ F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KEIKNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 249
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F I +++
Sbjct: 134 MLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLD-GGTLNYFGNSIPINLVVAVIAEVV 192
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLAKD A
Sbjct: 193 LLGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLAKDPDQAAIL 233
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ LA S
Sbjct: 234 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGS 285
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQR----------------- 203
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMV LG VQA+ T
Sbjct: 204 --NAELDSEKRLYPGGKFFDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATG 261
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 262 KGPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R PG E ++P YPGG +PLGLA+D E
Sbjct: 166 ILMGAVEGYRIAGG-PPG---------------EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 249
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 31/162 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGA-------VEF-------KFASTRTLFIVQL 45
M G G L +LL G + PVW++AGA +++ S VQ+
Sbjct: 52 MLGALGCLTPELLSQNGFTFQEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQV 111
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R G ++GL+ YPGGP +PL A D E
Sbjct: 112 ILMGSAEAYRAA---------------GSAPGVDGLDKLYPGGPF-DPLEFASDPDTLAE 155
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+ P+
Sbjct: 156 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLASPY 197
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGLI-------EGYRIGGGPLGEGLDSLYPGG-AFDPLGLADDPEAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPVENLYDHLADP 249
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 LLMGAVEGYRIA-----------GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G+ VW++AG+ F + L Q +L +A
Sbjct: 78 MLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 137
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KEIKNG
Sbjct: 138 VLMGFV-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNG 189
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 190 RLAMFSMFGFFVQAIVTGKGPIENLSDHIADP 221
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 163
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 164 VLMGFV-------EGYRVGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNG 215
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
LAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 216 SLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 247
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 85.5 bits (210), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL ++++L++G+ E +R
Sbjct: 158 TWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR----------------- 200
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT
Sbjct: 201 --NAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTG 258
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII TL++
Sbjct: 259 KGPLNNWATHLSDPLHTTIIDTLSS 283
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAIEGYRVA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+DN+++HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADP 251
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 74/145 (51%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL ++++L++G+ E +R
Sbjct: 158 TWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR----------------- 200
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT
Sbjct: 201 --NAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTG 258
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII TL++
Sbjct: 259 KGPLNNWATHLSDPLHTTIIDTLSS 283
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 80/153 (52%), Gaps = 15/153 (9%)
Query: 1 MAGVAGILFTDLLRVTG--IRELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAET 53
M G G + +LL G I E PVW++AGA F+ + L Q +L A
Sbjct: 110 MLGALGCVTPELLAKNGTPIAE-PVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQ 168
Query: 54 KRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 113
M I EG A EGL+ +PGGP +PL LA+D E K+KEIKN
Sbjct: 169 VILMGAI-------EGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKN 221
Query: 114 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
GRLAM +M G FVQA VT GPI+N+ HL++P
Sbjct: 222 GRLAMFSMFGFFVQAIVTGQGPIENLESHLANP 254
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 131 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN---------- 180
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGGP +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 181 -----GLPGVGEGNDL-YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 234
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 235 AIVTGKGPLENLLDHLDNP 253
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G +E + +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----GGPLREVT-----------DPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +L GI+ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVIDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q+LLMG E R
Sbjct: 126 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN---------- 175
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G F+Q
Sbjct: 176 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFIQ 229
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL DP
Sbjct: 230 AIVTGKGPLENLLDHLDDP 248
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AG+ F + +L Q +L +
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
+M + G + G E ++P YPGG L +PLGLA D E K+KEIKNG
Sbjct: 166 VFMGAVE-GYRVAGGPLG------EVVDPLYPGGSL-DPLGLADDPEAFAELKVKEIKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM++M G FVQA VT GP++NI +HL+DP
Sbjct: 218 RLAMLSMFGFFVQAIVTGKGPLENITDHLADP 249
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 84/161 (52%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S +++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D + E
Sbjct: 165 ILMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLAEDPERSAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 131 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRIN---------- 180
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGGP +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 181 -----GLPGVGEGNDL-YPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 234
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 235 AIVTGKGPLENLLDHLDNP 253
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 85.1 bits (209), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + L Q +L +A
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 167
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG G E ++P YPGG +PLGLA D E K+KEIKNG
Sbjct: 168 ILMGAV-------EGYRIGGGPLGEVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNG 219
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 ILMGAIEGYRVA-----------GGPLG-----EVIDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADP 258
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 82/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AG+ F + +L Q +L +A
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E E ++P YPGG +PLGLA+D E K+KEIKNG
Sbjct: 167 VLMGAV-------EGYRVAGEPLGEVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQALVTGKGPLENLADHLADP 250
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G F ++L G+ VW++AGA F + S ++ VQ+
Sbjct: 104 MLGALGCFFPEILSKNGVNFGEAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+ YPGG + LGLA+D E
Sbjct: 164 VLMGFVEGYR----------------VGGGPLGEGLDKVYPGG-AFDHLGLAEDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
+K+KE NGRLAM +MLG FVQA VT GPI+N +H++DP
Sbjct: 207 FKVKEFNNGRLAMFSMLGFFVQAIVTGKGPIENFFDHVADP 247
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|118486699|gb|ABK95186.1| unknown [Populus trichocarpa]
Length = 142
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 74/144 (51%), Gaps = 29/144 (20%)
Query: 24 WYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 73
W +AG VE S+ TL ++++L++G+ E +R
Sbjct: 18 WQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQR------------------ 59
Query: 74 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 133
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT
Sbjct: 60 -NAELDPEKRLYPGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGK 118
Query: 134 GPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII TL++
Sbjct: 119 GPLNNWATHLSDPLHTTIIDTLSS 142
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 85.1 bits (209), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 64 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 123
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 124 LLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 166
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 167 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 207
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F+ + L Q +L +A
Sbjct: 105 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQV 164
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 165 VLMGLI-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPDAFAELKVKELKNG 216
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 248
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 72/145 (49%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++LL+G+ E +R
Sbjct: 161 TWQDAGKVELVEGSSYLGQPLPFSISTLIWIEVLLIGYIEFQR----------------- 203
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+VT
Sbjct: 204 --NAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTG 261
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII TL +
Sbjct: 262 KGPLNNWATHLSDPLHTTIIDTLTS 286
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 109 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 169 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 211
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 252
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGG-AFDPLGLADDPEACAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+K+IKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKKIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 104 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 163
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G EGL+ YPGG +PLGLA D E K+KE+KN
Sbjct: 164 VLMGFV-------EGYRVGGGPLGEGLDKVYPGG-AFDPLGLADDPDTFAELKVKELKNS 215
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 216 RLAMFSMFGFFVQAIVTGKGPIENLADHVADP 247
>gi|149390623|gb|ABR25329.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 92
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PG ++ F +L E GYPG + NPL + E K KE+ NGRLAM+A
Sbjct: 3 NPGCVNQDPIF--KSYSLPPHECGYPGS-VFNPLNFEPTL----EAKEKELANGRLAMLA 55
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
LG VQ +VT GP DN+L+HLSDPWH TIIQTL+
Sbjct: 56 FLGFLVQHNVTQKGPFDNLLQHLSDPWHNTIIQTLS 91
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M ++ EG G GL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGFV-------EGYRVGGGPLGWGLDKIYPGGSF-DPLGLADDPEAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 249
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 87/169 (51%), Gaps = 33/169 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFK------FASTRTLFIV-----QLLL 47
M G AG + + G + P VW++ GA+ F + + +V +++L
Sbjct: 118 MLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVIL 177
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 107
+G AE R ++ + GL+ +PGGP +PLGLAKD N K
Sbjct: 178 VGGAEYYRSINNL-------------------GLDRLHPGGPF-DPLGLAKDPDNFALLK 217
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+KEIKNGRLAM AMLG F+QA T GP++N+ HLSDP+ ++ +A
Sbjct: 218 VKEIKNGRLAMFAMLGFFIQAYATGEGPVENLTTHLSDPFGNNLLSVIA 266
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA----STRTLFIVQLLLMGFAETKRY 56
M GVAGIL LL GI +P WYEAG V + + +TL QL +M +AETKR+
Sbjct: 80 MLGVAGILIPGLLTKVGILNVPQWYEAGKVAIESQPFGLNFQTLLGFQLFMMTWAETKRW 139
Query: 57 MDYISPGSQTKEGSFFGLEA------ALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLK 109
+++ +PGSQ+ S+ G E AL G +P YPGG L NP+G+ D K+K
Sbjct: 140 VEFKNPGSQSNPDSYPGAEMLPGKVFALGGSGDPNYPGG-LFNPMGMGDD-----SMKVK 193
Query: 110 EIKNGRLAMV 119
EI NGR A +
Sbjct: 194 EIANGRTACL 203
>gi|307106431|gb|EFN54677.1| hypothetical protein CHLNCDRAFT_24450 [Chlorella variabilis]
Length = 189
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 80/158 (50%), Gaps = 32/158 (20%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MA VAGILFTD+L P W+EAGA E+ + L ++ L++GF E KR+ +
Sbjct: 54 MAAVAGILFTDVLGK------PKWFEAGAQEY-WMDNNALLAIEFLVLGFLELKRFQGWK 106
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
G+ G +P +P G+ N+ KE+KNGRLAMVA
Sbjct: 107 ETGTS--------------GFLNAFP----FDPAGM-----NSPSMATKEVKNGRLAMVA 143
Query: 121 MLGIFVQAS--VTHVGPIDNILEHLSDPWHKTIIQTLA 156
+G VQAS VT GP++ + HLS P+ I ++A
Sbjct: 144 FIGFCVQASALVTREGPVEALQSHLSSPFENNFIGSIA 181
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 203
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMV LG VQA+ T
Sbjct: 204 --NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATG 261
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 262 KGPLNNWATHLSDPLHTTIIDTFSSS 287
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E ++P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYR----------------IGGGPLGEVIDPLYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 73/146 (50%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 206
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PL LA D + +L EIK+ RLAMVA LG VQA+ T
Sbjct: 207 --NAELDSEKRLYPGGKFFDPLSLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 265 KGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 250
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 167 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDP 248
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 128 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 187
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 188 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 230
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 231 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 271
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 161
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 162 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 204
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 245
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 250
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA+D E
Sbjct: 168 ILMGAVEGYRVA-----------GGPLG-----EITDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD A K+KEIKNGRLAM AMLG F QA VT GP++N+ +HLS
Sbjct: 211 HPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFFQAYVTGEGPVENLAKHLS 269
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ +A S
Sbjct: 270 DPFGNNLLTVIAGS 283
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSKNGVQFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G E L+ YPGG +PLGLA D E
Sbjct: 165 VLMGFVEGYR----------------VGGGPLGEDLDKLYPGG-AFDPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+++H++DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVENLVDHIADP 248
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE + S+ TL +++LL+G+ E +R
Sbjct: 160 TWQDAGKVELENGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR----------------- 202
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 203 --NAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATG 260
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T ++S
Sbjct: 261 KGPLNNWATHLSDPLHTTIFDTFSSS 286
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 249
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 139
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 140 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 182
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 183 XKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 139
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 140 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 182
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 183 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 139
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 140 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 182
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 183 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 250
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 78 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 137
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 138 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 180
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 181 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 221
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 78 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 137
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 138 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 180
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 181 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 221
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 248
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 161
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R G G E +P YPGG +PLGLA D E
Sbjct: 162 LLMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 204
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 205 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 245
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ VQ+
Sbjct: 80 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 139
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 140 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 182
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 183 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 223
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 222 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 84/162 (51%), Gaps = 34/162 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEFK--------------FASTRTLFIVQ 44
M G G +F +LL G++ E+ VW++AG+ F S ++ Q
Sbjct: 106 MLGALGCVFPELLARNGVKFGEV-VWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R G G E ++P YPGG +PLGLA+D
Sbjct: 165 VVLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFA 207
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 111 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQV 170
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 171 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 213
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 214 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 254
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRI-----------AGGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA+D E
Sbjct: 168 ILMGAIEGYRVA-----------GGPLG-----EVTDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 33/163 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR---ELPVWYEAGAVEFK--------------FASTRTLFIV 43
M G G L +LL+ G E VW++AGA F S + +
Sbjct: 89 MLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQSIVAVLLT 148
Query: 44 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 103
QL++MG AE RY EG +E + + L YPGG +PLGLA D
Sbjct: 149 QLVIMGAAEAYRY---------AGEGP---VETSGDSL---YPGG-AFDPLGLADDPDTL 192
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KE+KNGRLAM +M G FVQA +T P++N+ +HL+DP
Sbjct: 193 AELKVKELKNGRLAMFSMFGFFVQALITGKSPLENLADHLADP 235
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 109 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 169 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 211
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 212 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 252
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F + +++
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLD-GGTLNYFGKPIPINFILAVVAEIV 187
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLAKD A
Sbjct: 188 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLAKDPDQAALL 228
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 280
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AGA F + L Q +L +A
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KEIKNG
Sbjct: 166 VLMGLI-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ + ++DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPIENLFDQINDP 249
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F + +++
Sbjct: 129 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLD-GGTLNYFGKPIPINLILAVVAEIV 187
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLAKD A
Sbjct: 188 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLAKDPDQAALL 228
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 229 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 280
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 71/146 (48%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++LL+G+ E +R
Sbjct: 160 TWQDAGKVELVDGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQR----------------- 202
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 203 --NAELDSEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATG 260
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T ++S
Sbjct: 261 KGPLNNWATHLSDPLHTTIFDTFSSS 286
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F + +++
Sbjct: 130 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVVAEIV 188
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLAKD A
Sbjct: 189 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLAKDPDQAALL 229
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 230 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 281
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLADHLADP 248
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG++ F S ++ Q+
Sbjct: 103 MLGALGCVFPELLARNGVKFGEAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQV 162
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 163 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 246
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +MLG FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSMLGFFVQAIVTGKGPLENLADHLADP 247
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 250
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA+D E
Sbjct: 168 VLMGAIEGYRVA-----------GGPLG-----EVTDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 15/163 (9%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKR 55
M GVAG+L ++ ++ +YEAG + F + L + +LM + E +R
Sbjct: 82 MLGVAGVLVQEV-----VKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRR 136
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+ DY + GS ++ F G + + E GYPGG + +PLG +K N +E + KEIKNGR
Sbjct: 137 WQDYKNFGSVNEDPIFKGNK--VPNPEMGYPGG-IFDPLGFSKG--NLKELQTKEIKNGR 191
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LAMVA +G +QA T GP+ + HLS+P+ I++ +
Sbjct: 192 LAMVAYMGFVLQAQATGKGPLAALSAHLSNPFGNNILKNIGTC 234
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 248
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 81/182 (44%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL----------------FI 42
M G L ++ +TG PVW+ G + + + L I
Sbjct: 163 MLAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAI 222
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q+LLM E RY +E LEP YPGG L +P
Sbjct: 223 CQVLLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGTLFDP 263
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
L L++D + K+KEIKNGRLAMVA LG + QA+ T GP+ N+++H+SDP H +I
Sbjct: 264 LNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIA 323
Query: 154 TL 155
L
Sbjct: 324 ML 325
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL G++ VW++AGA F+ L Q+
Sbjct: 95 MLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 198 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANP 238
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL G++ VW++AGA F+ L Q+
Sbjct: 95 MLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 198 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANP 238
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL GI+ VW++AG+ FK S ++ Q+
Sbjct: 113 MLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQV 172
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA+D E
Sbjct: 173 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLAEDPEAFAE 215
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 216 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 256
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 76/158 (48%), Gaps = 33/158 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL-PVWYEAGAVEFK-----------FASTRTLF---IVQL 45
M G+ G L +L+ PVW+ GA F F + +LF +VQ
Sbjct: 84 MLGITGCLTPELINSNSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQA 143
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG AE R ++ EG +P YPGG +PLG + D E
Sbjct: 144 LLMGLAEYAR------------------IKFVPEGADPFYPGGKTFDPLGFSSDPEILAE 185
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHL 143
K+KEIKNGRLAM+AM G+F Q +VT V P+ N+ + L
Sbjct: 186 LKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDWL 223
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRVA-----------GGPLG-----EVTDPLYPGG-SFDPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 81/152 (53%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++ G+ F + +L Q +L +A
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E E ++P YPGG +PLGLA+D E K+KEIKNG
Sbjct: 168 VLMGAV-------EGYRVAGEPLGEVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNG 219
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 220 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGG-SFDPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 206 --NAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T ++S
Sbjct: 264 KGPLNNWATHLSDPLHTTIFDTFSSS 289
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 101 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 160
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 161 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLAEDPEAFAE 203
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 204 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL G++ VW++AGA F+ L Q+
Sbjct: 95 MLGALGCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 198 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANP 238
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 179
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 180 -----GLDGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL DP
Sbjct: 234 AIVTGKGPLENLLDHLDDP 252
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F+ S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E + P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVNPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 30/174 (17%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL------------FIVQLL 46
M GV G+L + L G + VW+++GAV ++T T I ++
Sbjct: 117 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVA 176
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
+ E RY ++G + GL+P YPGG +PLGLA D A E
Sbjct: 177 VFFLIENYRYQ---------QDGPWG------TGLDPLYPGGKYFDPLGLASDPSKADEL 221
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
K+KEIKNGRLAM+A LG VQ VT GP N +HL+DP+ + T+ SGS
Sbjct: 222 KVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFL-TILGSGS 274
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 134 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 183
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 184 -----GLDGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 237
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL DP
Sbjct: 238 AIVTGKGPLENLLDHLDDP 256
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD A K+KEIKNGRLAM AMLG F+QA VT GP++N+ HLS
Sbjct: 206 HPGGPF-DPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVTGKGPVENLAAHLS 264
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ +A +
Sbjct: 265 DPFGNNLLTVIAGT 278
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 248
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 80/160 (50%), Gaps = 33/160 (20%)
Query: 3 GVAGILFTDLLRV-TGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLL 46
G GIL +LL G++ PVW++AGA F L VQ++
Sbjct: 98 GALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVV 157
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 158 LMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAEL 200
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + G FVQA VT GPI N+ +HL+DP
Sbjct: 201 KVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 248
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL GI+ VW++AG+ FK S ++ Q+
Sbjct: 104 MLGALGCVFPELLSKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA+D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLAEDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 247
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G + +LL G+ VW++AGA F+ + +L Q +L A
Sbjct: 96 MLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQV 155
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG A EGL+P YPG +PLGLA D E K+KEIKNG
Sbjct: 156 ILMGLV-------EGYRVNGGPAGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNG 207
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI N+ HLSDP
Sbjct: 208 RLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 239
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 116 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 175
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 176 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAE 218
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 259
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 131 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 180
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 181 -----GLDGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 234
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL DP
Sbjct: 235 AIVTGKGPLENLLDHLDDP 253
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLAEDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 27 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 86
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 87 VLMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 129
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 130 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 170
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G + +LL G+ VW++AGA F+ + +L Q +L A
Sbjct: 97 MLGALGCITPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQV 156
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG A EGL+P YPG +PLGLA D E K+KEIKNG
Sbjct: 157 ILMGLV-------EGYRVNGGPAGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNG 208
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI N+ HLSDP
Sbjct: 209 RLAMFSMFGFFVQAIVTGQGPIANLDAHLSDP 240
>gi|209778997|gb|ACI87809.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 85
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+N
Sbjct: 3 EGLDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 61
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 62 LYDHLADP 69
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 218 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 258
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 33/165 (20%)
Query: 3 GVAGILFTDLLRVTG---IRELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
G GIL + L+ +G E VW++AGA F S + Q+
Sbjct: 96 GALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQI 155
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+L+G AE RY EG ++ + + L YPGG +PLGL D E
Sbjct: 156 VLVGTAEAYRY---------AGEGP---VDTSGDKL---YPGG-FFDPLGLGDDPEALAE 199
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 150
K+KEIKNGRLA V++ G FVQA VT GP++N+ +HL+DPW+
Sbjct: 200 LKVKEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|125600703|gb|EAZ40279.1| hypothetical protein OsJ_24721 [Oryza sativa Japonica Group]
Length = 267
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 140 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 182
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 183 --NAELDPEKRLYPGGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 240
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T ++S
Sbjct: 241 KGPLNNWATHLSDPLHTTIFDTFSSS 266
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 70 MLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 129
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E EGL+ YPGG PLGLA D A E
Sbjct: 130 VLMGFVEGYGVG----------------GGPLGEGLDKVYPGG-AFEPLGLADDPDTAAE 172
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 173 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 213
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 81/162 (50%), Gaps = 31/162 (19%)
Query: 1 MAGVAGILFTDLLRVTGIREL-PVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G + +LL G + PVW++AGA F S VQ+
Sbjct: 109 MLGALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+ +PGG +PLGLA+D E
Sbjct: 169 ILMGAIEGYR----VNGGP------------AGEGLDKLHPGGQFFDPLGLAEDPDAFAE 212
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
K+KEIKNGRLAM +M G FVQA VT GP+ N+ EHL+ P+
Sbjct: 213 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLANLDEHLASPF 254
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 104 MLGGLGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 164 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE F F+ + L +++L++GF E +R + + P +
Sbjct: 174 TWQDAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRL------ 226
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
YPGG +PLGLA D KL EIK+ RLAMVA G VQA+ T
Sbjct: 227 ------------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATG 274
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP+DN + HLSDP H TII T +
Sbjct: 275 KGPLDNWVTHLSDPLHTTIIDTFSK 299
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR------------ 177
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 178 ---INGLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 234 AIVTGKGPLENLLDHLDNP 252
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL +G + VW++AGA F L VQ+
Sbjct: 98 MLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQV 157
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 158 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 200
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ +HLS+P
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNP 241
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL ++ L++G+ E +R
Sbjct: 163 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+VT
Sbjct: 206 --NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAVTG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 264 KGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 90 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 149
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 150 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 192
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 193 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 233
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 87/170 (51%), Gaps = 34/170 (20%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M GVAG + + G P VW++ GA+ +T F I +++
Sbjct: 103 MLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLD-GNTLNYFGNSIPINLILAVIAEVV 161
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLA D A
Sbjct: 162 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLASDPDQAALL 202
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLSDP+ ++ ++
Sbjct: 203 KVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIS 252
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 129 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR------------ 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 ---INGLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 233 AIVTGKGPLENLLDHLDNP 251
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 82/182 (45%), Gaps = 46/182 (25%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL----------------FI 42
M G L ++L +TG PVW+ G + + + L I
Sbjct: 166 MLAALGALIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIVIAI 225
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEP---------GYPGGPLLNP 93
Q+LLM E RY +E LEP YPGG L +P
Sbjct: 226 CQVLLMVGPEYARY-------------------CGIEALEPLGIYLPGDINYPGGTLFDP 266
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
L L++D + K+KEIKNGRLAMVA LG + QA+ T GP+ N+++H+SDP H ++
Sbjct: 267 LNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLLA 326
Query: 154 TL 155
L
Sbjct: 327 ML 328
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM AMLG F+QA VT GP++N+ +HLS
Sbjct: 201 HPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLS 259
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ +A +
Sbjct: 260 DPFGNNLLTVIAGT 273
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 84/175 (48%), Gaps = 33/175 (18%)
Query: 1 MAGVAGILFTDLLRVT---GIRELPVWYEAGAVEFKFASTRTL--------------FIV 43
M G G +F ++L + G+ E PVW++AGA+ S L
Sbjct: 183 MLGALGCIFPEILAMNYGVGLEE-PVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAA 241
Query: 44 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 103
Q+LLMG AE R G E + +PGG NPL KD +
Sbjct: 242 QVLLMGGAEAYRASGVAPNG---------------EEFDKMHPGGYYFNPLKFGKDEADL 286
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
E K+KEIKNGRLAM +MLG ++QA+ T GP+ N+++H +D ++ I + + S
Sbjct: 287 AELKVKEIKNGRLAMFSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYVFTS 341
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T F + +++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLIFAVVAEVV 190
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLA D A
Sbjct: 191 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLANDPDQAALL 231
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG F+QA VT GP++N+ HLSDP+ ++ +A +
Sbjct: 232 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAAHLSDPFGNNLLTVIAGT 283
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 83.6 bits (205), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 72/145 (49%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVE-------FKFA---STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE F F+ + L +++L++GF E +R + + P +
Sbjct: 174 TWQDAGKVELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPEKRL------ 226
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
YPGG +PLGLA D KL EIK+ RLAMVA G VQA+ T
Sbjct: 227 ------------YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATG 274
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP+DN + HLSDP H TII T +
Sbjct: 275 KGPLDNWVTHLSDPLHTTIIDTFSK 299
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 164 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 60
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 61 VLMGAVEGYRV-----------AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 103
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 104 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 144
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 103 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 162
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 163 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 246
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 34 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 93
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 94 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 136
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 137 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 177
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAIEGYRVA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+++HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLVDHLADP 251
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 132
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 133 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 175
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 176 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLGXVT-----DPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM AMLG F+QA VT GP++N+ +HLS
Sbjct: 201 HPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLS 259
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ +A +
Sbjct: 260 DPFGNNLLTVIAGT 273
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + +L Q +L +A
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQV 164
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PLGLA D E K+KEIKNG
Sbjct: 165 VLMGAV-------EGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFSELKVKEIKNG 216
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 217 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM AMLG F+QA VT GP++N+ +HLS
Sbjct: 201 HPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLS 259
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ +A +
Sbjct: 260 DPFGNNLLTVIAGT 273
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 76 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 135
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 136 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 178
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 179 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 219
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 32/156 (20%)
Query: 6 GILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGF 50
G +F +LL G++ VW++AGA F S ++ Q+LLMG
Sbjct: 2 GCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGA 61
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E R G G E ++P YPGG +PLGLA D E K+KE
Sbjct: 62 VEGYRV-----------AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKE 104
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
IKNGRLAM++M G FVQA VT GP++N+ +HL+DP
Sbjct: 105 IKNGRLAMLSMFGFFVQAIVTGKGPLENLADHLADP 140
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++GF E +R
Sbjct: 160 TWQDAGKVELVEGSSYLGQPLPFSMTTLIWIEVLVIGFIEFQR----------------- 202
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 203 --NAELDPEKRLYPGGKYFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 260
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII T +
Sbjct: 261 KGPLNNWATHLSDPLHTTIIDTFTS 285
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 74 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 133
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 134 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 176
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 177 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 217
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 87/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T F I +++
Sbjct: 121 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVVAVIAEVV 179
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLA D A
Sbjct: 180 LLGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLASDPDQAAIL 220
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K KEIKNGRLAM AMLG F+QA VT GP++N+ +HLSDP+ ++ +++S
Sbjct: 221 KAKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLSKHLSDPFGNNLLTVISSS 272
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 81/162 (50%), Gaps = 32/162 (19%)
Query: 1 MAGVAGILFTDLLR--VTGIRELPVWYEAGAVEF-----------KFASTRTLFIV---Q 44
M G G +F ++L V + PVW++AG+ F +++ V Q
Sbjct: 104 MLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQ 163
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R GL EG + YPGG +PLGLA D
Sbjct: 164 VVLMGLVEGFRIN---------------GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFA 207
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N+L+HL +P
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNP 249
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 250
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 86/174 (49%), Gaps = 30/174 (17%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFASTRTL------------FIVQLL 46
M GV G+L + L G + VW+++GAV ++T T I ++
Sbjct: 124 MLGVVGMLVPEGLYANGNTNIKGAVWWDSGAVLLDPSATLTWAGIPNPVPLALAVIFEVA 183
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
+ E RY ++G + GL+P YPGG +PLGLA D A E
Sbjct: 184 VFFLIENYRYQ---------QDGPWG------TGLDPLYPGGKYFDPLGLASDPSKADEL 228
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
K+KEIKNGRLAM+A LG VQ VT GP N +HL+DP+ + T+ SGS
Sbjct: 229 KVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFL-TILGSGS 281
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G + +LL GI+ VW++AG+ FK + L Q +L +A
Sbjct: 108 MLGALGCVTPELLAKNGIKFGEAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQV 167
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 168 ILMGAV-------EGYRVGGGPLGEGLDKIYPGG-AFDPLGLADDPDTFAELKVKELKNG 219
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G F QA VT GPI+N+L+HL +P
Sbjct: 220 RLAMFSMFGFFTQAIVTGKGPIENLLDHLDNP 251
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 77/155 (49%), Gaps = 32/155 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ VQ+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------VGGGPLGEGLDPIYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL 140
K+KEIKNGRLAM +M G FVQA VT GPI+N L
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENSL 243
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +L G++ VW++AG+ FK S ++ Q+
Sbjct: 107 MLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
++KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLAEDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 250
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +L G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EVIDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 206 --NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 264 KGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 23 VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 77
VW++AG+ F + L Q +L +A M I EG G
Sbjct: 2 VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI-------EGYRVGGGPL 54
Query: 78 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+
Sbjct: 55 GEGLDPLYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIE 113
Query: 138 NILEHLSDP 146
N+ +HL+DP
Sbjct: 114 NLYDHLADP 122
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADP 249
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 80/156 (51%), Gaps = 12/156 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MA VAGIL +++R WY AG L V+ LM + E +R+ D
Sbjct: 79 MAAVAGILVQEIVRPDVF-----WYNAGKEVESPLGPLGLLAVEFFLMHWVELRRWQDLR 133
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
PGS ++ F + L E GYPGG + P + D+ E K+KEIKNGRLAM+A
Sbjct: 134 KPGSVDQDPIFS--QYKLPAHEVGYPGG-VFAPF-IPGDLA---ELKVKEIKNGRLAMLA 186
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+G + A VT GPI + EHL+DP+ TI A
Sbjct: 187 FVGFVMAAQVTGKGPIAALQEHLADPFGTTIFSKAA 222
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGG-SFDPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 29/157 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL +LL VT P W+EAGA E+ + + L ++ ++MGF E KRY +
Sbjct: 78 MMAVAGILGQELLGVT-----PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQGFK 131
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
G+ SF +P G+ N+ KE+KNGRLAMVA
Sbjct: 132 QTGTSGFINSF------------------PFDPAGM-----NSPSMATKEVKNGRLAMVA 168
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
+G VQA T PI+ + HL+DP+ K I L +
Sbjct: 169 FIGFCVQALATRTQPIEGLTAHLADPFGKNITYYLTH 205
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 250
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL G++ VW++AGA F+ L Q+
Sbjct: 96 MLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQV 155
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 156 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 198
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 199 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANP 239
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 74 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQV 133
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 134 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAE 176
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 177 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADP 217
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G GI+ +LL+ G++ VW++AGA F+ L VQ+
Sbjct: 95 MLGALGIVTPELLQKNGVQFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+L+G E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 VLLGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + G FVQA VT GPI N+ +HLS+P
Sbjct: 198 LKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNP 238
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 206 --NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 264 KGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDP 250
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+H+ DP
Sbjct: 231 AIVTGKGPLENLLDHIDDP 249
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 126 PVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 175
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 176 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 229
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL DP
Sbjct: 230 AIVTGKGPLENLLDHLDDP 248
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 111 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQV 170
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 171 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAE 213
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 214 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 254
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 206 --NAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII T ++S
Sbjct: 264 KGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F ++L G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMGF E R G EGL+P YPGG +PLGLA D E
Sbjct: 166 VLMGFVEGYR----------------IGGGPLGEGLDPLYPGG-AFDPLGLADDPDAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA V GPI+N+ + L+ P
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVPGKGPIENLSDPLAAP 249
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 76/157 (48%), Gaps = 29/157 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL +LL VT P W+EAGA ++ L ++ +++GF ETKRY +
Sbjct: 59 MMAVAGILGQELLGVT-----PKWFEAGAKDYGI-PFFPLLAMEAIILGFLETKRYQGFK 112
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+ GS LN N+ + +LKEIKNGRLAM+A
Sbjct: 113 TTGSSG-----------------------FLNSFPFDPANMNSPDMQLKEIKNGRLAMIA 149
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
+G VQA VT GPI+ + H+ DP+ I + N
Sbjct: 150 FVGFSVQALVTREGPIEGLFNHIGDPFGHNITANVMN 186
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D +
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAD 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 222 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 262
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 70 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 129
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 130 ILMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 172
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 173 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 213
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL G++ VW++AGA F+ L Q+
Sbjct: 95 MLGALGCVTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 198 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANP 238
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 82.8 bits (203), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 83/161 (51%), Gaps = 34/161 (21%)
Query: 3 GVAGILFTDLL-RVTGIR--ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
G G++ +LL GI+ + +W++AGA F+ L VQ+
Sbjct: 115 GALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 175 VLMGLVEGYR----VNGGP------------AGEGLDPLYPG-EAFDPLGLADDPDTFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM A LG FVQA VT GPI+N+ +HL++P
Sbjct: 218 LKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 248
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL +G + VW++AGA F L VQ+
Sbjct: 97 MLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQV 156
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 157 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 199
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ +HLS+P
Sbjct: 200 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNP 240
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++ G+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDAEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 29/157 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGIL +LL VT P W+EAGA E+ + + L ++ ++MGF E KRY +
Sbjct: 78 MMAVAGILGQELLGVT-----PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQGFK 131
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
G+ SF +P G+ N+ KE+KNGRLAMVA
Sbjct: 132 QTGTSGFINSF------------------PFDPAGM-----NSPSMATKEVKNGRLAMVA 168
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
+G VQA T PI+ + HL+DP+ K I L +
Sbjct: 169 FIGFCVQALATRTQPIEGLTAHLADPFGKNITYYLTH 205
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 88/156 (56%), Gaps = 17/156 (10%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAE 52
M V G++ + L + G VW E G V + R + +Q++LMG AE
Sbjct: 152 MLAVPGVVIPEALNIPGG----VWTETGKVFLDGETGRDSILEFWPIYAAIQVVLMGGAE 207
Query: 53 TKRYMDYISP-GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEI 111
R D + P G +G F E+A GL+P PGGPL + +AK+ ++ + K+KEI
Sbjct: 208 KFR-QDGVGPAGFVPFKGKF--EESAFNGLDPVNPGGPL-DFFDVAKNPQDLQILKVKEI 263
Query: 112 KNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
KNGRLAM+AMLG+FVQ +VT GP N +H+++P+
Sbjct: 264 KNGRLAMIAMLGVFVQGAVTGEGPAANWGKHVANPF 299
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 73/145 (50%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 159 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 201
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA+D +L EIK+ RLAMVA LG VQA+VT
Sbjct: 202 --NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTG 259
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII ++
Sbjct: 260 KGPLNNWATHLSDPLHTTIIDNFSS 284
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 166 ILMGAVEGYRI-----------AGGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP+ N+ +H++DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLKNLADHIADP 249
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 110 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 169
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 170 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 212
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 213 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 253
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 132
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 133 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 175
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 70/146 (47%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 206
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 207 --NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T S
Sbjct: 265 KGPLNNWATHLSDPLHTTIFDTFGGS 290
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGG-AFDPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIK GRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKKGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL +G + VW++AGA F L VQ+
Sbjct: 95 MLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 198 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANP 238
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 84/172 (48%), Gaps = 32/172 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP + + N
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYVPN 260
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQV 60
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R I+ G E +P YPGG +PLGLA D E
Sbjct: 61 ILMGAVEGYR----IAGGPLG------------EVTDPLYPGGSF-DPLGLADDPEAFAE 103
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HLSDP
Sbjct: 104 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDP 144
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 100 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 159
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 160 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 202
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 203 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 243
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+K IKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 250
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 20 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 79
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 80 VLMGAVEGYRIA-----------GGPLG-----EITDPLYPGGSF-DPLGLADDPEAFAE 122
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 123 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 163
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 86/174 (49%), Gaps = 38/174 (21%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF--------------IVQ 44
M G AG + + G P VW++ GA+ TL+ I +
Sbjct: 129 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL---LLDGNTLYYFGKNIPINLVLAVIAE 185
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++L+G AE R ++ + LE L +PGGP +PLGLAKD A
Sbjct: 186 VVLVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLAKDPDQAA 226
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +MLG F+QA VT GP++N+ HLSDP+ ++ + +
Sbjct: 227 ILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGA 280
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 VLMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 97 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 156
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 157 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEALAE 199
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 200 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 240
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----------FASTRTLFIV---QL 45
M G G +F +LL G++ VW++AG+ F F +++ + Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 250
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 85/172 (49%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F I +++
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIV 191
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ ++ E L +PGGP +PLGLA D A
Sbjct: 192 LVGGAEYYRIINGLN------------FEDKL------HPGGPF-DPLGLANDPDQAALL 232
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ +A S
Sbjct: 233 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGS 284
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 40 LFIV---QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL 96
LF+V + LMG AE R G G F E+A + ++ YPGGP +PLGL
Sbjct: 161 LFVVVAANVALMGAAENYRRTGEGPAGYSPGVGKFD--ESAYDSMDSLYPGGPF-DPLGL 217
Query: 97 AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
A D E K+KEIKNGRLAMV+ LG VQA+VT GP N +H++DP+ ++ LA
Sbjct: 218 ADDPEVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILA 277
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 109 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 169 VLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 211
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 PVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR------------ 175
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL +G + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 176 ---INGLPGVGDGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL+DP
Sbjct: 232 AIVTGKGPLENLLDHLADP 250
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL +G + VW++AGA F L VQ+
Sbjct: 94 MLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQV 153
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 154 ILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 196
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 197 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANP 237
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 128 PVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYR------------ 175
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL +G + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 176 ---INGLPGVGDGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL+DP
Sbjct: 232 AIVTGKGPLENLLDHLADP 250
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 206
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D + +L EIK+ RLAMVA LG VQA+ T
Sbjct: 207 --NAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP + HLSDP H TII T ++S
Sbjct: 265 KGPRNYWATHLSDPLHTTIIDTFSSS 290
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL G + VW++AGA F L Q+
Sbjct: 98 MLGALGCLTPELLAKNGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQV 157
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 158 ILMGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 200
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HLS+P
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNP 241
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 143 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 202
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 203 VLMGAIEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 245
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 246 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 286
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 80/163 (49%), Gaps = 33/163 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFA--------------STRTLFIVQ 44
M G G + ++L G VW+ AGA FK S + I Q
Sbjct: 91 MLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQ 150
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R ++ G A EGL+P YPG +PLGLA D
Sbjct: 151 VILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFA 193
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
E K+KEIKNGRLAM +M G +VQA VT GP++N EH++DP+
Sbjct: 194 ELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPF 236
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 101 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 160
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 161 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 203
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 204 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 79 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 138
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G K P YPGG +PLGLA D E
Sbjct: 139 ILMGAVEGYR----VAGGPLGKVTG------------PLYPGGSF-DPLGLADDPEAFAE 181
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 182 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 222
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 160 TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 202
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
+ L+ + YPGG +PLGLA+D +L EIK+ RLAMVA LG VQA+VT
Sbjct: 203 --NSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTG 260
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII ++
Sbjct: 261 KGPLNNWATHLSDPLHTTIIDNFSS 285
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 131 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 180
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 181 -----GLDGVGEGNNL-YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQ 234
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 235 AIVTGKGPLENLLDHLDNP 253
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 69/129 (53%), Gaps = 13/129 (10%)
Query: 23 VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 77
VW++AGA F + L Q +L +A M I EG G
Sbjct: 14 VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLI-------EGYRVGGGPL 66
Query: 78 LEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+
Sbjct: 67 GEGLDPLYPG-DAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 125
Query: 138 NILEHLSDP 146
N+ +HL+DP
Sbjct: 126 NLYDHLADP 134
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 70/146 (47%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 161 TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR----------------- 203
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 204 --NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 261
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T S
Sbjct: 262 KGPLNNWATHLSDPLHTTIFDTFGAS 287
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDP 250
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 24 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 73
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 74 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 127
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 128 AIVTGKGPLENLLDHLDNP 146
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 104 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 247
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL GI VW++AGA F L Q+
Sbjct: 90 MLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQV 149
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
++MG AE R G G EGL+P +PGG +PLGLA D E
Sbjct: 150 VVMGLAEAYR-----------ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAE 192
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ +HL++P
Sbjct: 193 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANP 233
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AG+ F + +L Q +L +A
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PLGLA D E K+KEIKNG
Sbjct: 166 VLMGAV-------EGYRVAGGPLGEVTDPIYPGGSF-DPLGLADDPEAFAELKVKEIKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 76/151 (50%), Gaps = 32/151 (21%)
Query: 11 DLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKR 55
+LL G+ PVW++AGA F+ L VQ++LMG E R
Sbjct: 4 ELLAANGVSFGEPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLVEGYR 63
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
++ G A EGL+P YPG +PLGLA D E K+KEIKNGR
Sbjct: 64 ----MNGGP------------AGEGLDPLYPG-EAFDPLGLADDPDTFAELKVKEIKNGR 106
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
LAM + G FVQA VT GPI N+ +HL++P
Sbjct: 107 LAMFSCFGFFVQAIVTGKGPIQNLTDHLANP 137
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVQFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRI-----------AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 72/139 (51%), Gaps = 31/139 (22%)
Query: 23 VWYEAGAVEFKFA--------------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW+ AGA FK S + I Q++LMG E R ++ G
Sbjct: 62 VWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYR----VNGGP---- 113
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G +VQA
Sbjct: 114 --------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQA 164
Query: 129 SVTHVGPIDNILEHLSDPW 147
VT GP++N EH++DP+
Sbjct: 165 IVTGKGPVENWAEHVADPF 183
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 231 AIVTGKGPLENLLDHLDNP 249
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL GI VW++AGA F L Q+
Sbjct: 90 MLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQV 149
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
++MG AE R G G EGL+P +PGG +PLGLA D E
Sbjct: 150 VVMGLAEAYR-----------ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAE 192
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ +HL++P
Sbjct: 193 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANP 233
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAIEGYRVA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGLADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIV---------------- 43
M AGIL + L+ G + W+E GA E T F V
Sbjct: 82 MLAAAGILIPEGLQANGANIKGGTWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIA 140
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 102
++ LMG E R G G F + +GL+P YPGGP +PLGLA D
Sbjct: 141 VEVGLMGAVEFYRRNGSGPAGYSPGIGKFD--SSVFDGLDPLYPGGPF-DPLGLADDPEV 197
Query: 103 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+E K+KEIKNGRLAMV++LG VQ+ VT GP N +H++DP+ ++ L
Sbjct: 198 LQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLG 251
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRIN---------- 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 231 AIVTGKGPLENLLDHLDNP 249
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 129 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR------------ 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 ---INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 233 AIVTGKGPLENLLDHLDNP 251
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PL LA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLRLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 96 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 155
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 156 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 198
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 199 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 239
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 74 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 133
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 134 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 176
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 177 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 217
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLGDHITDP 250
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIV---------------- 43
M AGIL + L+ G + W+E GA E T F V
Sbjct: 112 MLAAAGILIPEGLQANGANIKGGTWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIA 170
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 102
++ LMG E R G G F + +GL+P YPGGP +PLGLA D
Sbjct: 171 VEVGLMGAVEFYRRNGTGPAGYSPGIGKFD--SSVFDGLDPLYPGGPF-DPLGLADDPEV 227
Query: 103 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
+E K+KEIKNGRLAMV++LG VQ+ VT GP N +H++DP+ ++ L
Sbjct: 228 LQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLG 281
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 32/163 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G++F + L G+ PVW++AGA F S + Q+
Sbjct: 197 MLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQV 256
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R G G E + YPGG +PLGLA D E
Sbjct: 257 VLMGLAEAYRV-----------NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAE 299
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 300 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 342
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 79/163 (48%), Gaps = 32/163 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G++F + L G+ PVW++AGA F S + Q+
Sbjct: 437 MLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQV 496
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R G G E + YPGG +PLGLA D E
Sbjct: 497 VLMGLAEAYRV-----------NGGPLG-----EDSDALYPGG-AFDPLGLADDPETFAE 539
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 540 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 582
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 17/113 (15%)
Query: 36 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 95
S + Q++LMG AE R G G E + YPGG +PLG
Sbjct: 7 SILAILAFQVVLMGLAEAYRV-----------NGGPLG-----EDSDALYPGG-AFDPLG 49
Query: 96 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
LA D E K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 50 LADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 102
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 130 aa]
Length = 130
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 62/111 (55%), Gaps = 18/111 (16%)
Query: 36 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 95
S ++ Q++LMGF E R S GL+P YPGG +PLG
Sbjct: 22 SILAIWACQVVLMGFVEGYRIAGDPS-----------------GGLDPLYPGG-AFDPLG 63
Query: 96 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
LA D E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 64 LADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADP 114
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL G + VW++AGA F L VQ+
Sbjct: 95 MLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 198 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANP 238
>gi|77799163|gb|ABB03724.1| putative chloroplast chlorophyll A-B binding protein type II
[Sorghum bicolor]
Length = 113
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 61/103 (59%), Gaps = 17/103 (16%)
Query: 44 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 103
Q++LMGF E R G G EGL+ YPGG +PLGLA D A
Sbjct: 12 QVVLMGFVEGYRV-----------GGGPLG-----EGLDKVYPGG-AFDPLGLADDPDTA 54
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KE+KNGRLAM +M G FVQA VT GPI+N+ +H++DP
Sbjct: 55 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADP 97
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +MLG FVQA VT GP++N+ HLS
Sbjct: 224 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLS 282
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ L S
Sbjct: 283 DPFGNNLLTVLGGS 296
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 1 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 60
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 61 VLMGAIEGYRV-----------AGGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 103
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 104 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 144
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 81.6 bits (200), Expect = 9e-14, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 79/156 (50%), Gaps = 32/156 (20%)
Query: 6 GILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLLLMGF 50
G L +LL G++ VW++AGA F+ L Q++LMG
Sbjct: 2616 GCLTPELLSKNGVQFGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGL 2675
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E R ++ G A EGL+P YPG +PLGLA D E K+KE
Sbjct: 2676 VEGYR----VNGGP------------AGEGLDPLYPGESF-DPLGLADDPDTFAELKVKE 2718
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
IKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 2719 IKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANP 2754
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 32/163 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G++F + L G+ PVW++AGA F S + Q+
Sbjct: 180 MLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQV 239
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R ++ G ++ YPGG +PLGLA D E
Sbjct: 240 VLMGLAEAYR----VNGGPLGEDSDAL------------YPGG-AFDPLGLADDPETFAE 282
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 283 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 325
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 32/163 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G++F + L G+ PVW++AGA F S + Q+
Sbjct: 420 MLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQV 479
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R ++ G ++ YPGG +PLGLA D E
Sbjct: 480 VLMGLAEAYR----VNGGPLGEDSDAL------------YPGG-AFDPLGLADDPETFAE 522
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 523 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 565
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 80/163 (49%), Gaps = 32/163 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G++F + L G+ PVW++AGA F S + Q+
Sbjct: 660 MLGALGVVFPEALAKAGVPLAEPVWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQV 719
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG AE R ++ G ++ YPGG +PLGLA D E
Sbjct: 720 VLMGLAEAYR----VNGGPLGEDSDAL------------YPGG-AFDPLGLADDPETFAE 762
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWH 148
K+KE+KNGRLAM AM G +VQA VT GP++N H++DP++
Sbjct: 763 LKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFN 805
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGG +PLGLA D E K+KE+KNGRLAM AM G +VQA VT GP++N H++
Sbjct: 23 YPGG-AFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAHVA 81
Query: 145 DPWH 148
DP++
Sbjct: 82 DPFN 85
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 79/162 (48%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFKFA--------------STRTLFIVQ 44
M G G + ++L G VW+ AGA FK S + I Q
Sbjct: 88 MLGALGCVTPEILAKYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQ 147
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R ++ G A EGL+P YPG +PLGLA D
Sbjct: 148 VILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFA 190
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G +VQA VT GP++N EH++DP
Sbjct: 191 ELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVADP 232
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQA 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDP 250
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 81.6 bits (200), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +MLG FVQA VT GP++N+ HLS
Sbjct: 224 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLS 282
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ L S
Sbjct: 283 DPFGNNLLTVLGGS 296
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 VLMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +MLG FVQA VT GP++N+ HLS
Sbjct: 224 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLS 282
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ L S
Sbjct: 283 DPFGNNLLTVLGGS 296
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 84/175 (48%), Gaps = 22/175 (12%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLFIV---------------- 43
M AGIL + L+ G + VW+E GA E T F V
Sbjct: 109 MLAAAGILIPEGLQANGANIKGGVWFETGA-EMLNGGTLNYFAVPWGIVSNPLPLFAVIA 167
Query: 44 -QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 102
++ LMG E R G G F + EGL+ YPGGP +PLGLA D
Sbjct: 168 IEVGLMGAVEFYRRNGTGPAGYSPGIGKFD--SSVFEGLDSIYPGGPF-DPLGLADDPEV 224
Query: 103 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
+E K+KEIKNGRLAMV++L +Q+ VT GP N ++H+ DP+ ++ L N
Sbjct: 225 FQELKVKEIKNGRLAMVSVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVLGN 279
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 115 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 174
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 175 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 217
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRL M +M G FVQA VT GPI+++ +HL+DP
Sbjct: 218 LKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIEDLADHLADP 258
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW+ AG+ F S ++ Q+
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 161
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 162 VLMGAVEGYRIA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 204
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 245
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +MLG FVQA VT GP++N+ HLS
Sbjct: 224 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLS 282
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ L S
Sbjct: 283 DPFGNNLLTVLGGS 296
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AG+ F + +L Q +L +A
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGAV-------EGYRIAGGPLGEVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPLENLADHLTDP 249
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 109 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G + +P YPGG +PLGLA D E
Sbjct: 169 ILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAE 211
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 125 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 174
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 175 -----GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQ 228
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 229 AIVTGKGPLENLLDHLDNP 247
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 47 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 106
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 107 VLMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 149
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 150 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 190
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +MLG FVQA VT GP++N+ HLS
Sbjct: 199 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLS 257
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ L S
Sbjct: 258 DPFGNNLLTVLGGS 271
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 103 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 162
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 163 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 246
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 103 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 162
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 163 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 246
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPLYPGG-SFDPLGFADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGG-SFDPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRVA-----------GGPLG-----EITDPLYPGG-SFDPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G +VQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADP 250
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q+++MG E R
Sbjct: 54 PVWFKAGAQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRIN---------- 103
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 104 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 157
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 158 AIVTGKGPLENLLDHLDNP 176
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 250
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AG+ F + +L Q +L +A
Sbjct: 106 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV 165
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PLGLA D E K+KE+KNG
Sbjct: 166 VLMGAV-------EGYRIAGGPLGEITDPIYPGGSF-DPLGLADDPEAFSELKVKELKNG 217
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 218 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 80/162 (49%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK--------------FASTRTLFIVQ 44
M G G + +LL+ G+ VW++AGA F+ S + + Q
Sbjct: 86 MLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQ 145
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
L LMG E R ++ G A EGL+ YPG +PLGLA D
Sbjct: 146 LTLMGLIEGYR----VNGGP------------AGEGLDALYPG-EAFDPLGLADDPDTFS 188
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KE+KNGRLAMV+M G FVQ VT GPI+N+ +HL+ P
Sbjct: 189 ELKVKELKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASP 230
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 104 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R I+ G K +P YPGG +PLGLA D E
Sbjct: 164 VLMGAVEGYR----IAGGPLGKV------------TDPLYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGR AM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRSAMFSMFGFFVQAIVTGKGPLENLADHLADP 247
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 132
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 133 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 175
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 176 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 125 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 174
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 175 -----GLPGVGEGNDL-YPGGQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQ 228
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 229 AIVTGKGPLENLLDHLDNP 247
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E+ R
Sbjct: 126 PVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRIN---------- 175
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 176 -----GLPGVGEGNDL-YPGGQYFDPLGLADDPVTLAELKVKEIKNGRLAMFSMFGFFVQ 229
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 230 AIVTGKGPLENLLDHLDNP 248
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E E + YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRVA---------------GNEPLGEAEDLLYPGGSF-DPLGLATDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 14/154 (9%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGA-VEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
M GVAGIL +L+R WY + VE F T L +L +M + E++R D
Sbjct: 88 MLGVAGILVQELVRPDVF-----WYTSAVDVELPFDIT-GLVAFELFVMHWVESRRGYDI 141
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
+PGS ++ F + L EPGYPGG + P + E K+KEIKNGRLAM+
Sbjct: 142 KNPGSMDQDPIFSNFK--LPSHEPGYPGG-IFAPFVPG----SMEELKVKEIKNGRLAML 194
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
A +G + A ++ + P+ + EHLSDP + TI
Sbjct: 195 AFIGFTMAAQISGLNPLAALGEHLSDPLNTTIFS 228
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 81/169 (47%), Gaps = 32/169 (18%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCDFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
K+KEIKNGRLAM + G FVQA VT GP++N+ +HL+DP + T
Sbjct: 209 LKVKEIKNGRLAMFSTFGFFVQAIVTGKGPLENLADHLADPVNNNACPT 257
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 86 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 135
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 136 -----GLPGVGEGNDL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQ 189
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 190 AIVTGKGPLENLLDHLDNP 208
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 27/157 (17%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MAGVAGILFTD L + W+ GA L ++ ++ GF E KR +
Sbjct: 89 MAGVAGILFTDALHIGSAP----WFSIGAELESPIPLWGLATIEFVIFGFLEMKRLEGWK 144
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
G GL +P +PLG+ N++E +KE+KNGRLAM A
Sbjct: 145 KTGQN--------------GLLNWFP----FDPLGM-----NSKEMMVKEVKNGRLAMFA 181
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
G VQA VT GP+ N+ +H++DP++ I ++AN
Sbjct: 182 WCGFMVQALVTREGPVTNLEKHIADPFNNNFITSIAN 218
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 72/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 83 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLRIN---------- 132
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 133 -----GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 186
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 187 AIVTGKGPLENLLDHLDNP 205
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLG A D E
Sbjct: 168 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGPADDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD A K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLS
Sbjct: 241 HPGGPF-DPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLS 299
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ +A S
Sbjct: 300 DPFGNNLLTVIAGS 313
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRVA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDTFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 249
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F I +++
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIV 189
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ ++ E L +PGGP +PLGLA D A
Sbjct: 190 LVGGAEYYRIINGLN------------FEDKL------HPGGPF-DPLGLANDPDQAALL 230
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ ++ S
Sbjct: 231 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGS 282
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G + +P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 85/172 (49%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ T F I +++
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLD-GGTLNYFGKPIPINLIVAVIAEIV 189
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ ++ E L +PGGP +PLGLA D A
Sbjct: 190 LVGGAEYYRIINGLN------------FEDKL------HPGGPF-DPLGLANDPDQAALL 230
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ ++ S
Sbjct: 231 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGS 282
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R EG E L YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRV---------AGEGPLGEAEDLL------YPGGSF-DPLGLAADPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R EG E L YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRV---------AGEGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 82/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S T++ Q+
Sbjct: 35 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQV 94
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+ E
Sbjct: 95 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEIPEAFAE 137
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 138 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 178
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G + +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 74 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 133
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 134 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 176
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +H++DP
Sbjct: 177 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADP 217
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 130 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 179
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 180 -----GLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 234 AIVTGKGPLENLLDHLDNP 252
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 129 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR------------ 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 ---INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 232
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+H+ +P
Sbjct: 233 AIVTGKGPLENLLDHIDNP 251
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD A K+KEIKNGRLAM +MLG F+QA VT GP++N+ HLS
Sbjct: 207 HPGGPF-DPLGLAKDPDQAAILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLS 265
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ + +
Sbjct: 266 DPFGNNLLTVIGGA 279
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 129 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR------------ 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E ++KEIKNGRLAM +M G FVQ
Sbjct: 177 ---INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELRVKEIKNGRLAMFSMFGFFVQ 232
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 233 AIVTGKGPLENLLDHLDNP 251
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G + +LL G++ VW++AGA F S ++ Q+
Sbjct: 104 MLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 247
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL GI VW++AG+ F L Q+
Sbjct: 70 MLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQV 129
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
++MG AE R G G EGL+P +PGG +PLGLA D E
Sbjct: 130 VVMGLAEAYR-----------ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAE 172
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ +HL++P
Sbjct: 173 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANP 213
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G+ VW++AGA F+ S + Q+
Sbjct: 91 MLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQV 150
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R G G EGL+ YPGG +PLGLA D E
Sbjct: 151 LLMGAIEGYRV-----------NGGPLG-----EGLDKLYPGGSF-DPLGLADDPDTFSE 193
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 194 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANP 234
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AGA F L Q+++MG AE R
Sbjct: 115 VWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------AN 163
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 164 GGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 217
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GPI+N+ +HL++P
Sbjct: 218 IVTGKGPIENLSDHLANP 235
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G + +LL GI VW++AG+ F L Q+
Sbjct: 87 MLGALGCITPELLAKNGIPFGEAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAFQV 146
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
++MG AE R G G EGL+P +PGG +PLGLA D E
Sbjct: 147 VVMGLAEAYR-----------ANGGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAE 189
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GPI N+ +HL++P
Sbjct: 190 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANP 230
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D +
Sbjct: 166 VLMGAIEGYRVA-----------GGPLG-----EVVDPLYPGG-TFDPLGLADDPEAFAD 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 VKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G L +LL +G++ VW++AGA F S ++ Q+
Sbjct: 107 MLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G + +P YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 250
>gi|117663141|gb|ABK55743.1| chloroplast type III LHCII CAB precursor protein [Cucumis sativus]
Length = 84
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
GL+ EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT
Sbjct: 12 GLDGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 70
Query: 133 VGPIDNILEHLSDP 146
GP++N+L+HL DP
Sbjct: 71 KGPLENLLDHLDDP 84
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AGA F L Q+++MG AE R
Sbjct: 114 VWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------AN 162
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 163 GGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 216
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GPI+N+ +HL++P
Sbjct: 217 IVTGKGPIENLSDHLANP 234
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G GI+ +LL G+ VW++AGA F+ L VQ+
Sbjct: 86 MLGALGIVTPELLAKNGVPFGEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQV 145
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+L+G E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 146 ILLGLVEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 188
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + G FVQA VT GPI N+ +HLS+P
Sbjct: 189 LKVKEIKNGRLAMFSSFGFFVQAIVTGKGPIQNLDDHLSNP 229
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +MLG F+QA VT GP++N+ HLS
Sbjct: 223 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLS 281
Query: 145 DPWHKTIIQTLANS 158
DP+ I+ L S
Sbjct: 282 DPFGNNILTVLGGS 295
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 33/158 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL-PVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G+ G L +L+ PVW++ GA F A S + +VQ
Sbjct: 72 MLGITGCLVPELINSNPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVAVIVVQA 131
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG AE R ++ + EG + YPGG +PLG + D + E
Sbjct: 132 LLMGVAEYAR------------------IKLSPEGNDAFYPGGKAFDPLGFSSDPESFAE 173
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHL 143
K+KEIKNGRLAM+AM G+F Q +VT V P+ N+ + L
Sbjct: 174 LKVKEIKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AGA F L Q+++MG AE R
Sbjct: 116 VWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------AN 164
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 165 GGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 218
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GPI+N+ +HL++P
Sbjct: 219 IVTGKGPIENLSDHLANP 236
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G+ VW++AGA F+ S + Q+
Sbjct: 98 MLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQV 157
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R G G EGL+ YPGG +PLGLA D E
Sbjct: 158 LLMGAIEGYRV-----------NGGPLG-----EGLDKLYPGGSF-DPLGLADDPDTFAE 200
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANP 241
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AGA F L Q+++MG AE R
Sbjct: 115 VWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------AN 163
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 164 GGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 217
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GPI+N+ +HL++P
Sbjct: 218 IVTGKGPIENLSDHLANP 235
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AGA F L Q+++MG AE R
Sbjct: 115 VWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------AN 163
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 164 GGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 217
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GPI+N+ +HL++P
Sbjct: 218 IVTGKGPIENLSDHLANP 235
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 109 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 169 VLMGAVEGYRIA-----------GGPLG-----EVVDPIYPGGSF-DPLGLADDPEAFAE 211
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL DP
Sbjct: 212 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLFDP 252
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F+ S ++ Q+
Sbjct: 105 MPGALGCVFPELLSRNGVKFGEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGG-SFDPLGLADVPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM MLG F+QA VT GP++N+ +HLS
Sbjct: 204 HPGGPF-DPLGLASDPDQAAPLKVKEIKNGRLAMFPMLGFFIQAYVTGEGPVENLAKHLS 262
Query: 145 DPWHKTIIQTLA 156
DP+ ++ ++
Sbjct: 263 DPFGNNLLTVIS 274
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 27 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 86
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 87 ILMGAVEGYRI-----------AGGPLG-----EVVDPLYPGGSF-DPLGLADDPDAFAE 129
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNG LAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 130 LKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADP 170
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + +L Q +L +A
Sbjct: 73 MLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 132
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + G + G +E +P YPGG +PLGLA D E K+KEIKNG
Sbjct: 133 ILMGAVE-GYRIAGGPLGEVE------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNG 184
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FV A VT GP++N+ +HL+DP
Sbjct: 185 RLAMFSMFGFFVXAIVTGKGPLENLADHLADP 216
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHL 143
YPGG +PLG +KD +E+K+KEIKNGRLA++A +G VQAS GP++N+ HL
Sbjct: 169 YPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 227
Query: 144 SDPWHKTIIQTL 155
SDPWHK I + +
Sbjct: 228 SDPWHKNIAEII 239
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 70/138 (50%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFKFASTRTL--------------FIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AGA F L Q+++MG AE R
Sbjct: 134 VWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYR-----------AN 182
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 183 GGPLG-----EGLDPLHPGG-AFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 236
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GPI+N+ +HL++P
Sbjct: 237 IVTGKGPIENLSDHLANP 254
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 70/139 (50%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 110
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 111 -----GLPGVGEGNNL-YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQ 164
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 165 AIVTGKGPLENLLDHLDNP 183
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 163 TWQDAGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQR----------------- 205
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG VQA+ T
Sbjct: 206 --NAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATG 263
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TI TL +
Sbjct: 264 KGPLNNWATHLSDPLHTTIFDTLGS 288
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHL 143
YPGG +PLG +KD +E+K+KEIKNGRLA++A +G VQAS GP++N+ HL
Sbjct: 169 YPGG-AFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 227
Query: 144 SDPWHKTIIQTL 155
SDPWHK I + +
Sbjct: 228 SDPWHKNIAEII 239
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGSIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +H+ DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDP 250
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGSVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 164 TWQDAGKVELVDGSSYLGQPLPFTISTLIWIEVLVIGYIEFQR----------------- 206
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PL LA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 207 --NAELDPEKRLYPGGSYFDPLALAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 264
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TI T S
Sbjct: 265 KGPLNNWATHLSDPLHTTIFDTFGGS 290
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 78/157 (49%), Gaps = 16/157 (10%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEF--KFASTRT----LFIVQLLLMGFAETK 54
M GVAGIL ++ I WY AG E F + + + LLM F E +
Sbjct: 86 MLGVAGILGQEI-----INPEQWWYSAGMPENLPSFDGNKVNMGGILAWEFLLMHFVEVR 140
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
R+ D S + F + E GYPGGP +PLG +K N +E + KEIKNG
Sbjct: 141 RWQDIRKKDSVNADP--FNPNLKVPNPEMGYPGGPF-DPLGFSKG--NFKEVQTKEIKNG 195
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
RLAMVA + +QA T GP+ N+ +HL+ P+ +
Sbjct: 196 RLAMVAFVAFTIQAQATGKGPLANLTDHLASPFSNNV 232
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/139 (39%), Positives = 69/139 (49%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q+LLMG E R
Sbjct: 132 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN---------- 181
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG YPG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 182 -----GLPGVGEGNNL-YPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFFVQ 235
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL DP
Sbjct: 236 AIVTGKGPLENLLDHLDDP 254
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 52/72 (72%), Gaps = 1/72 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 204 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLS 262
Query: 145 DPWHKTIIQTLA 156
DP+ ++ ++
Sbjct: 263 DPFGNNLLTVIS 274
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 80 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 138
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 139 DPFGNNLLTVISGA 152
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM ++ G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKNGRLAMFSIFGFFVQAIVTGKGPLENLADHLADP 248
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 146 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 204
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 205 DPFGNNLLTVISGA 218
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ VQ+
Sbjct: 118 MLGALGCIFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQV 177
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPG +PLGLA D E
Sbjct: 178 VLMGAVEGYRIA-----------GGPLG-----EITDPLYPGNSF-DPLGLADDPEAFAE 220
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 221 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 261
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 79/162 (48%), Gaps = 32/162 (19%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQ 44
M G G +F ++L + G+ + VW++AG+ F S ++ Q
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R GL EG + YPGG +PLG A D
Sbjct: 162 VILMGLVEGYRIN---------------GLPDVGEGGDL-YPGGQYFDPLGFADDPETLA 205
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL +P
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNP 247
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R PG +G E L YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRV-----PG----DGPLGEAEDLL------YPGGSF-DPLGLATDPVAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 79/162 (48%), Gaps = 32/162 (19%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQ 44
M G G +F ++L + G+ + VW++AG+ F S ++ Q
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R GL EG + YPGG +PLG A D
Sbjct: 162 VILMGLVEGYRIN---------------GLPDVGEGGDL-YPGGQYFDPLGFADDPETLA 205
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL +P
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDNP 247
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+N
Sbjct: 172 EGLDPLYPGDKF-DPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPIEN 230
Query: 139 ILEHLSDPW 147
EH++DP+
Sbjct: 231 WAEHVADPF 239
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 204 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 262
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 263 DPFGNNLLTVISGA 276
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 32/156 (20%)
Query: 6 GILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGF 50
G +F +LL G++ VW++ G+ F S ++ Q++LMG
Sbjct: 113 GCVFPELLSRNGVKFGEAVWFKVGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 172
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E R G G E ++P YPGG +PLGLA D E K+KE
Sbjct: 173 VEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAELKVKE 215
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
IKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 216 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 251
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 204 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 262
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 263 DPFGNNLLTVISGA 276
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKR 55
M GVAG+L ++ ++ +YEAG + F + L + +LM + E +R
Sbjct: 82 MLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRR 136
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+ DY + GS ++ F G + + E GYPGG + +P G +K N +E + KEIKNGR
Sbjct: 137 WQDYKNFGSVNEDPIFKGNK--VPNPEMGYPGG-IFDPFGFSKG--NLKELQTKEIKNGR 191
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LAM+A + +QA T GP+ + HLS+P+ I++ +
Sbjct: 192 LAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNIGTC 234
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRIN---------- 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 -----GLPDVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 231 AIVTGKGPLENLLDHLDNP 249
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ + + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 137 TILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 176
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A +G VQ S GP++N+ HLSDPWH I
Sbjct: 177 DPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 207
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+K+GRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 208 LKVKELKHGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 248
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 122 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 180
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 181 DPFGNNLLTVISGA 194
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 95 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 155 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ + L+DP
Sbjct: 198 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADP 238
>gi|383867507|gb|AFH54999.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
Length = 138
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 8 MLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 66
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
PGS ++ F +L + GYPGG + NPL + + E K KE+ NGRL
Sbjct: 67 YPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELANGRL 115
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T F I +++
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGNNIPINLIVAVIAEVV 188
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ ++ E L +PGGP +PLGLA D A
Sbjct: 189 LVGGAEYYRIINGLN------------FEDKL------HPGGPF-DPLGLADDPDQAAIL 229
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM AMLG + QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 230 KVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGN 281
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ + + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 141 TILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 180
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 181 DPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 234
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQ 44
M G G + +LL + +G+ PVW++AG+ F S + Q
Sbjct: 186 MLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQ 245
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG AE R ++ G A EGL+ PGG +PLGLA D
Sbjct: 246 VILMGGAEAYR----VNGGP------------AGEGLDAINPGG-AFDPLGLADDPDTFA 288
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +MLG +VQA T GP++N EH++DP
Sbjct: 289 ELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADP 330
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ +HLS
Sbjct: 143 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 201
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 202 DPFGNNLLTVISGA 215
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVTDPLYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ + L+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADP 249
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G+ VW++AGA F+ S + Q+
Sbjct: 98 MLGALGCIFPELLGSYGVPFGESVWFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGTQV 157
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G EGL+ YPGG +PLGLA D E
Sbjct: 158 ILMGAIEGYRV-----------NGGPLG-----EGLDKLYPGGSF-DPLGLADDPDTFAE 200
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 201 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANP 241
>gi|295798043|emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]
Length = 179
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 29/143 (20%)
Query: 23 VWYEAGAVEFKFA----------STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S TL +++L++G+ E +R
Sbjct: 52 TWQDAGKVELVEGASYLGQPLPFSITTLIWIEVLVIGYIEFQR----------------- 94
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A ++ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 95 --NAEVDPEKRXYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 152
Query: 133 VGPIDNILEHLSDPWHKTIIQTL 155
GP++N HLSDP H TI+ T
Sbjct: 153 KGPLNNWATHLSDPLHTTILDTF 175
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G GI+F + L G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGIVFPEPLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EVTDPTYPGG-SFDPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM ++ G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKELKNGRLAMFSVFGFFVQAIVTGKGPLENLADHLADP 247
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 65/119 (54%), Gaps = 21/119 (17%)
Query: 34 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 93
+ S T+ +++ + + FAE +R M+ + K+ YPGG +P
Sbjct: 136 WGSLPTILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDP 175
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
LG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 176 LGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 234
>gi|383867527|gb|AFH55009.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867531|gb|AFH55011.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 8 MLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 66
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
PGS ++ F +L + GYPGG + NPL + + E K KE+ NGRL
Sbjct: 67 YPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELANGRL 115
>gi|383867523|gb|AFH55007.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
saltuaria]
Length = 138
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 8 MLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 66
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
PGS ++ F +L + GYPGG + NPL + + E K KE+ NGRL
Sbjct: 67 YPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELANGRL 115
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 78/159 (49%), Gaps = 32/159 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 78/159 (49%), Gaps = 32/159 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
K+KEIKNGRLAM +M G FVQA VT GPI+N+ +HL+
Sbjct: 215 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|383867495|gb|AFH54993.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867497|gb|AFH54994.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867499|gb|AFH54995.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867501|gb|AFH54996.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867503|gb|AFH54997.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867505|gb|AFH54998.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867509|gb|AFH55000.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867511|gb|AFH55001.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867513|gb|AFH55002.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867515|gb|AFH55003.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867517|gb|AFH55004.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
tibetica]
gi|383867519|gb|AFH55005.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867521|gb|AFH55006.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
convallium]
gi|383867525|gb|AFH55008.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
gi|383867529|gb|AFH55010.1| LHC I type IV chlorophyll binding protein, partial [Juniperus
przewalskii]
Length = 138
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 8/116 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 8 MLGVAGMLIPEVLTSIGILNVPKWYDAGKVEY-FASSSTLFVIEFILFHYVELRRWQDIK 66
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRL 116
PGS ++ F +L + GYPGG + NPL + + E K KE+ NGRL
Sbjct: 67 YPGSVNQDPIF--KSYSLPPNDVGYPGG-IFNPLNFSPSL----EAKEKELANGRL 115
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL +G + VW++AGA F L VQ+
Sbjct: 95 MLGALGCLTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNG LAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 198 LKVKEIKNGALAMFSMFGFFVQAIVTGKGPVQNLDDHLANP 238
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S + Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G + +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRVA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPDTFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 207 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 247
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/139 (38%), Positives = 71/139 (51%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 127 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRIN---------- 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 177 -----GLPDVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 231 AIVTGKGPLENLLDHLDNP 249
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S + Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S + Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S + Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHL 143
YPGG +PLG +KD E+K+KEIKNGRLA++A +G VQAS GP++N+ HL
Sbjct: 169 YPGG-AFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 227
Query: 144 SDPWHKTIIQTL 155
SDPWHK I + +
Sbjct: 228 SDPWHKNIAEII 239
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 251
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 89 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 148
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 149 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 192
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 193 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 233
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA VT GP++N+ HLS
Sbjct: 207 HPGGPF-DPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSAHLS 265
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 266 DPFGNNLLTVISGA 279
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S + Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ + + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 141 TILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 180
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 181 DPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 234
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 161
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 162 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 246
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 78/155 (50%), Gaps = 31/155 (20%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGA-VEFKFASTRTLFIVQLLLMGFAETKRYMDY 59
MA VAGILFTDL+ L W+EAGA VE F +TL IV+++ E R Y
Sbjct: 83 MAAVAGILFTDLV------GLGPWWEAGAKVESSF-DLKTLIIVEIVTFAILEGFRAKAY 135
Query: 60 ISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMV 119
G GL P P +PL + D E +LKE+KNGRLAM+
Sbjct: 136 EKTGET--------------GLGPFAP----FDPLNMRSD-----ETRLKELKNGRLAML 172
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
A+LG QA+V GPI+ + HL+DP H I +
Sbjct: 173 AILGFSSQAAVQGKGPIECLQAHLADPGHNNIFTS 207
>gi|3153151|emb|CAA06961.1| chlorophyll a/b-binding protein [Hordeum vulgare subsp. vulgare]
Length = 75
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 46/74 (62%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T GP++N HLS
Sbjct: 2 YPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 61
Query: 145 DPWHKTIIQTLANS 158
DP H TI T +S
Sbjct: 62 DPLHTTIFDTFGSS 75
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 70/141 (49%), Gaps = 34/141 (24%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRY--MDYISPGSQ 65
PVW++AGA F +++ V Q+LLMG E R +D + G+
Sbjct: 123 PVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFRINGLDGVGNGND 182
Query: 66 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIF 125
YPGG +PLGLA D E K+KEIKNGRLAM +M G F
Sbjct: 183 L------------------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 224
Query: 126 VQASVTHVGPIDNILEHLSDP 146
VQA VT GP++N L+HL +P
Sbjct: 225 VQAIVTGKGPLENWLDHLDNP 245
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 102 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 161
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 162 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 205
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 246
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G L +LL G + VW++AGA F L Q+
Sbjct: 95 MLGALGCLTPELLAKNGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQV 154
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 155 ILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 197
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP+ N+ +HL++P
Sbjct: 198 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLANP 238
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHL 143
YPGG +PLG +KD +E+K+KEIKNGRLA++A +G VQAS GP++N+ HL
Sbjct: 168 YPGG-AFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 226
Query: 144 SDPWHKTIIQTL 155
SDPWH+ I + +
Sbjct: 227 SDPWHRNIAEII 238
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 71 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV 130
++ + LE + +PGGP +PLGLA D A K+KEIKNGRLAM +MLG F+QA V
Sbjct: 193 YYRITNGLEFDDKLHPGGPF-DPLGLATDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYV 251
Query: 131 THVGPIDNILEHLSDPWHKTIIQTLANS 158
T GP +N+ HLSDP+ ++ ++ +
Sbjct: 252 TGEGPFENLCAHLSDPFGNNLLTVISGA 279
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQ 44
M G G + +LL + +G+ PVW++AG+ F S + Q
Sbjct: 185 MLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQ 244
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG AE R ++ G A EGL+ PGG +PLGLA D
Sbjct: 245 VILMGGAEAYR----VNGGP------------AGEGLDAINPGG-AFDPLGLADDPDTFA 287
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +MLG +VQA T GP++N EH++DP
Sbjct: 288 ELKVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADP 329
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 105 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 164
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R +G E L YPGG +PLGLA D E
Sbjct: 165 ILMGAVEGYRV---------AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 249
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T F I +++
Sbjct: 124 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVV 182
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLA D A
Sbjct: 183 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLASDPDQAAIL 223
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +ML F+QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 224 KVKEIKNGRLAMFSMLAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 275
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G + +LL +G++ VW++AGA F S ++ Q+
Sbjct: 108 MLGALGCVTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G + +P YPGG +PLGLA D E
Sbjct: 168 ILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 251
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 88/172 (51%), Gaps = 31/172 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTL-----------FIVQLLL 47
M G AG + + G P VW++ GA+ + S + I +++L
Sbjct: 108 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVIL 167
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 107
+G AE R S K+ +GL+ L+ +PGG +PLGLAKD K
Sbjct: 168 VGGAEYYR--------STNKD--VYGLQ----DLDRLHPGG-AFDPLGLAKDPDQFALLK 212
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHK---TIIQTLA 156
+KEIKNGRLAM +MLG FVQA VT GP++N+ HLSDP+ T+IQ A
Sbjct: 213 VKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTA 264
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQ 44
M G G + +LL + +G+ PVW++AG+ F S + Q
Sbjct: 186 MLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQ 245
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG AE R ++ G A EGL+ PGG +PLGLA D
Sbjct: 246 VILMGGAEAYR----VNGGP------------AGEGLDAINPGG-AFDPLGLADDPDTFA 288
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +MLG +VQA T GP++N EH++DP
Sbjct: 289 ELKVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADP 330
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S + Q+
Sbjct: 119 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQV 178
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLG A D E
Sbjct: 179 ILMGAIEGYRVA-----------GGPLG-----EVTDPIYPGGNF-DPLGWADDPDAFAE 221
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 222 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 262
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQ 44
M G G + +LL + +G+ PVW++AG+ F S + Q
Sbjct: 173 MLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQ 232
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG AE R ++ G A EGL+ PGG +PLGLA D
Sbjct: 233 VILMGGAEAYR----VNGGP------------AGEGLDAINPGG-AFDPLGLADDPDTFA 275
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +MLG +VQA T GP++N EH++DP
Sbjct: 276 ELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADP 317
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA D E
Sbjct: 166 VLMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLADDPEAFGE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+K GRLAM++M G FVQA VT GP++N+ +H++DP
Sbjct: 209 LKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADP 249
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G + +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E G + G +E +P YPGG +PLGLA D E
Sbjct: 166 ILMGAVE----------GYRVAGGPLGEVE------DPIYPGGSF-DPLGLADDPEAFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 79/161 (49%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R +G E L YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRV---------AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|302854499|ref|XP_002958757.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
gi|300255932|gb|EFJ40213.1| hypothetical protein VOLCADRAFT_108301 [Volvox carteri f.
nagariensis]
Length = 112
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+N
Sbjct: 30 EGLDPLYPGESF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 88
Query: 139 ILEHLSDP 146
+ +HL++P
Sbjct: 89 LNDHLANP 96
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 132
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 133 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 176
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 177 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 217
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G + +LL G++ VW++AGA F S ++ Q+
Sbjct: 106 MLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G + +P YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRVA-----------GGPLG-----DVTDPIYPGGSF-DPLGLADDPDTFAE 208
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 249
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 80/163 (49%), Gaps = 32/163 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP---VWYEAGAVEF--------------KFASTRTLFIV 43
M G G + +LL G LP VW++AGA F S
Sbjct: 86 MLGALGCVVPELLAKNGT-PLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAF 144
Query: 44 QLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNA 103
Q+++MG AE+ R+ + G F LEG + YPG +P+GLA+D
Sbjct: 145 QVVVMGAAESFRF-------NGGAPGGF------LEGNDRLYPGD-QFDPMGLAEDPDTF 190
Query: 104 REWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GPI N+ HL+DP
Sbjct: 191 AELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADP 233
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T + F I +++
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD-GNTLSYFGNSIPINLVVAVIAEVV 59
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLA D A
Sbjct: 60 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLASDPDQAAIL 100
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +M F+QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 101 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 152
>gi|302832608|ref|XP_002947868.1| chlorophyll a/b-binding protein [Volvox carteri f. nagariensis]
gi|300266670|gb|EFJ50856.1| chlorophyll a/b-binding protein [Volvox carteri f. nagariensis]
Length = 151
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 72 FGLEAALEGLEP---------GYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAML 122
+G + LEP YPGG +PL A D + ++EIKNGRLAMVAML
Sbjct: 50 YGRYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAVREIKNGRLAMVAML 109
Query: 123 GIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156
G+FVQA+VT GP++N++E +SDP + I +A
Sbjct: 110 GLFVQAAVTKKGPVENVMEFVSDPAGENIFTNVA 143
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 29/160 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGI T++L + G WYEAGA E+ L VQ +MG E +R ++
Sbjct: 101 MMAVAGICTTEILGIGG-----PWYEAGAAEYDL-PINALLAVQFPVMGILELRRIRGWL 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+ G G+ +P +P+G+ N + LKE+KNGRLAM+A
Sbjct: 155 ATGKS--------------GVNETFP----WDPMGM-----NGDQMALKEVKNGRLAMIA 191
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
+GI VQA V GP+ + +H++DP+ + + + GS
Sbjct: 192 FVGIVVQAIVYRTGPVAALKDHITDPFGCNMATNIMHIGS 231
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+D E
Sbjct: 167 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ + L+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADPLADP 250
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 65/123 (52%), Gaps = 21/123 (17%)
Query: 30 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 89
V + + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 VPVPWGNLPTILAIEFLAIAFAEHQRTMEK---DPEKKK----------------YPGG- 172
Query: 90 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 148
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 AFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWH 232
Query: 149 KTI 151
I
Sbjct: 233 NNI 235
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 71/146 (48%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 162 TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR----------------- 204
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAM+ LG VQA+VT
Sbjct: 205 --NAELDPEKRLYPGGKFFDPLGLAADPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTG 262
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
GP++N HLSDP H TII + S
Sbjct: 263 KGPLNNWATHLSDPLHTTIIDNVFYS 288
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R +G E L YPGG +PLGLA D E
Sbjct: 167 ILMGAVEGYRV---------AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G F QA VT GP++N+ +HL+DP
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFAQAIVTGKGPLENLADHLADP 251
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 59/111 (53%), Gaps = 14/111 (12%)
Query: 36 STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLG 95
S + Q+LLMG E R T G F E L+ YPGGP +PLG
Sbjct: 10 SLLAILATQVLLMGAVEGYR-------AGNTAPGQFG------EDLDRLYPGGPF-DPLG 55
Query: 96 LAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
LA D E K+KEIKNGRLAM MLG + QA VT GP++N L HL DP
Sbjct: 56 LADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ L ++ +++G+ E +R
Sbjct: 160 TWQDAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQR----------------- 202
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ + YPGG +PLGLA D +L EIK+ RLAMVA LG VQA VT
Sbjct: 203 --NAELDPEKRLYPGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTG 260
Query: 133 VGPIDNILEHLSDPWHKTIIQTLAN 157
GP++N HLSDP H TII L++
Sbjct: 261 KGPLNNWATHLSDPLHTTIIDNLSS 285
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 80/162 (49%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEFK--------------FASTRTLFIVQ 44
M G G + +LL+ G VW++AGA F+ S + + Q
Sbjct: 85 MLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQ 144
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG E R ++ G A E +P YPG +PLGLA D
Sbjct: 145 IVLMGLIEGYR----VNGGP------------AGEITDPIYPG-EAFDPLGLADDPDTLA 187
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAMV+M G F+QA VT GPI+N+ +HL+ P
Sbjct: 188 ELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAP 229
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 86/172 (50%), Gaps = 32/172 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFK------FASTRTL-----FIVQLLL 47
M G AG + + G P VW++ GA+ + F +T L I +++L
Sbjct: 66 MLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVIL 125
Query: 48 MGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWK 107
+G AE R + GS L+ +PGG +PLGLAKD K
Sbjct: 126 VGGAEYYRSTNKSPLGSD---------------LDRLHPGG-AFDPLGLAKDPDQFALLK 169
Query: 108 LKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHK---TIIQTLA 156
+KEIKNGRLAM +MLG FVQA VT GP++N+ HLSDP+ T+IQ A
Sbjct: 170 VKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQGTA 221
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
P+W++AGA F +++ V Q++LMG E R
Sbjct: 106 PIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 155
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL +G YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 156 -----GLPGVGDG-NNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 209
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 210 AIVTGKGPLENLLDHLDNP 228
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ + + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 92 TILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 131
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 132 DPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 185
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G + +LL +G + VW++AGA F + +L Q + K
Sbjct: 98 MLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFK 157
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
+ + G + G A EGL+P YPG +PLGLA D E K+KEIKNG
Sbjct: 158 VILMGLVEGYRVNGGP------AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNG 210
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI N+ +HLS+P
Sbjct: 211 RLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNP 242
>gi|302854495|ref|XP_002958755.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
gi|300255930|gb|EFJ40211.1| hypothetical protein VOLCADRAFT_69853 [Volvox carteri f.
nagariensis]
Length = 88
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 77 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI
Sbjct: 4 AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 62
Query: 137 DNILEHLSDP 146
+N+ +HL++P
Sbjct: 63 ENLNDHLANP 72
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 183 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 242 LADHLADP 249
>gi|914284|gb|AAB34068.1| light-harvesting complex b type 3, Lhcb3 [Ginkgo biloba, 3-4 week
old seedlings, Peptide Partial, 132 aa]
Length = 132
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT GP++N+L+HL
Sbjct: 55 YPGGQYFDPLGLADDPDTFAELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLD 114
Query: 145 DP 146
+P
Sbjct: 115 NP 116
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 82/162 (50%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLL-RVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQ 44
M G G + +LL + +G+ PVW++AG+ F S + Q
Sbjct: 170 MLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQ 229
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG AE R ++ G A EGL+ PGG +PLGLA D
Sbjct: 230 VVLMGGAEAYR----VNGGP------------AGEGLDAINPGG-AFDPLGLADDPDTFA 272
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +MLG +VQA T GP++N EH++DP
Sbjct: 273 ELKVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADP 314
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T + F I +++
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD-GNTLSYFGNSIPINLVVAVIAEVV 183
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ + LE L +PGGP +PLGLA D A
Sbjct: 184 LVGGAEYYRIINGLD------------LEDKL------HPGGPF-DPLGLASDPDQAAIL 224
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +M F+QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 276
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
P+W++AGA F +++ V Q++LMG E R
Sbjct: 128 PIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 177
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL +G YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 178 -----GLPGVGDGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 232 AIVTGKGPLENLLDHLDNP 250
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 104 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV 163
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 164 ILMGAVEGYRIA-----------GGPLG-----EVTDPIYPGGSF-DPLGLADDPEAFAE 206
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+ P
Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGP 247
>gi|302854487|ref|XP_002958751.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|302854497|ref|XP_002958756.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
gi|300255926|gb|EFJ40207.1| hypothetical protein VOLCADRAFT_84624 [Volvox carteri f.
nagariensis]
gi|300255931|gb|EFJ40212.1| hypothetical protein VOLCADRAFT_78096 [Volvox carteri f.
nagariensis]
Length = 98
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 77 ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
A EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI
Sbjct: 14 AGEGLDPLYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 72
Query: 137 DNILEHLSDP 146
+N+ +HL++P
Sbjct: 73 ENLNDHLANP 82
>gi|413935744|gb|AFW70295.1| hypothetical protein ZEAMMB73_802965 [Zea mays]
Length = 150
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ + + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 46 TILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 85
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 86 DPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWHNNI 139
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ W++AG+ F + ++L Q +L +A
Sbjct: 86 MLGALGCVFPELLARNGVKFGEACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQV 145
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PL LA D E K+KE+KNG
Sbjct: 146 ILMGAV-------EGYRIAGGPLGEVTDPIYPGGSF-DPLALADDPEAFAELKVKELKNG 197
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 198 RLAMFSMFGFFVQAIVTGKGPLENLADHLADP 229
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 23 VWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72
W +AG VE S+ TL +++L++G+ E +R
Sbjct: 160 TWQDAGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQR----------------- 202
Query: 73 GLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132
A L+ YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T
Sbjct: 203 --NAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 260
Query: 133 VGPIDNILEHLSDPWHKTIIQTLANS 158
G ++N HLSDP H TI T +S
Sbjct: 261 KGRLNNWATHLSDPLHTTIFDTFGSS 286
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 61/113 (53%), Gaps = 21/113 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 165 TILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 204
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKT 150
D E KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH T
Sbjct: 205 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNT 257
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHL 143
YPGG +PLG +KD +E+K+KEIKNGRLA++A +G VQAS GP++N+ HL
Sbjct: 129 YPGG-AFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHL 187
Query: 144 SDPWHKTIIQTL 155
SDPWH+ I + +
Sbjct: 188 SDPWHRNIAEII 199
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 83 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 141
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 142 LADHLADP 149
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
P+W++AGA F +++ V Q++LMG E R
Sbjct: 93 PIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 142
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL +G YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 143 -----GLPGVGDGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 196
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+HL +P
Sbjct: 197 AIVTGKGPLENLLDHLDNP 215
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 85 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 144
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 145 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 188
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 189 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 229
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 42 MLGVVGMLLPEVLTTIGIINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 100
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+PG ++ F + +L E GYPGG + NPL A + E K KE+ NGR
Sbjct: 101 NPGCVNQDPIF--KQYSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGIIN 61
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 79/159 (49%), Gaps = 34/159 (21%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTL--------------FIVQLL 46
M G G + +LL G + W+ AGA F + L IVQ++
Sbjct: 96 MLGALGCVVPELLD--GTNHI-AWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVI 152
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
LM + E R ++ G A GL+ YPGG +PLGLA D E
Sbjct: 153 LMSYVEGYR----VNGGP------------AGTGLDAVYPGGSF-DPLGLADDPDTFSEL 195
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 145
K+KEIKNGRLAM++M G F+QA VT GPI+N+ +HL+D
Sbjct: 196 KVKEIKNGRLAMLSMFGFFIQAIVTGEGPIENLNKHLAD 234
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G+ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVEFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R +G E L YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRV---------AGDGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 250
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 126 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 175
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 176 -----GLPGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 229
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+H+ +P
Sbjct: 230 AIVTGKGPLENLLDHIDNP 248
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AG+ F +++ V Q++LMG E R
Sbjct: 128 PVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 177
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQ
Sbjct: 178 -----GLPGVGEGNNL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT GP++N+L+H+ +P
Sbjct: 232 AIVTGKGPLENLLDHIDNP 250
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KE+KNGRLAM +M G FVQA VT GP++N
Sbjct: 184 EVVDPLYPGG-SFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242
Query: 139 ILEHLSDP 146
+ +HLSDP
Sbjct: 243 LADHLSDP 250
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 84/158 (53%), Gaps = 17/158 (10%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAG---AVEFKFASTRTLFIV--QLLLMGFAETKR 55
M VAGI +++R WYEA + F + L +V +L M F E +R
Sbjct: 89 MLAVAGIAVQEVVRPDVF-----WYEAALKSPMPFGNSPAAILGLVAFELFAMHFVEVRR 143
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
D+ +PGSQ ++ F + L E GYPGG + P+ + D+ E KLKEIKNGR
Sbjct: 144 AYDFKNPGSQDQDPIFSNNK--LPKHEVGYPGG-IFAPV-IPGDLA---ELKLKEIKNGR 196
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
LAM+A G +QA VT GP+ ++ +HLS+P TI
Sbjct: 197 LAMLAFAGFVMQAQVTGKGPLASLGDHLSNPIGTTIFS 234
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 183 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 242 LADHLADP 249
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +L G++ VW +AG+ F S ++ Q+
Sbjct: 108 MLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 167
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R G G+ ++P YPGG +PLGLA+D E
Sbjct: 168 LLMGAVEGYRVA-----------GGPLGVV-----VDPLYPGGSF-DPLGLAEDPEAFAE 210
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE KNGRLAM +M G F+QA VT GP++N+ +HL DP
Sbjct: 211 LKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDP 251
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ + + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 137 TILVIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 176
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A + VQ S GP++N+ HLSDPWH I
Sbjct: 177 DPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLSDPWHNNI 230
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 31/138 (22%)
Query: 23 VWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AG+ F S ++ VQ++LMG E R I+ G
Sbjct: 8 VWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYR----IAGGPLG-- 61
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA
Sbjct: 62 ----------EVVDPLYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 110
Query: 129 SVTHVGPIDNILEHLSDP 146
VT GP++N+ +HL+DP
Sbjct: 111 IVTGKGPLENLADHLADP 128
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVE-----FKFASTRTLFIVQLLLMGFAETKR 55
M GVAG+L ++ ++ +YEAG + F + L + +LM + E +R
Sbjct: 70 MLGVAGVLVQEI-----VKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRR 124
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+ DY + GS ++ F G + E GYPGG + +P G +K + +E + KEIKNGR
Sbjct: 125 WQDYKNFGSVNEDPIFKG--NKVPNPEMGYPGG-IFDPFGFSKG--DFKELQTKEIKNGR 179
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
LAM+A + +QA T GP+ + HLS+P+ I++ +
Sbjct: 180 LAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNIGTC 222
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF-----KFASTRTLFIVQLLLMGFAETK 54
M G G + +LL G++ VW++AG+ F + +L Q +L +A
Sbjct: 107 MLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQV 166
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + G + G +E +P YPGG +PLGLA D E K+KE+KNG
Sbjct: 167 VLMGAVE-GYRVAGGPLGEVE------DPLYPGGSF-DPLGLADDPEAFAELKVKELKNG 218
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 219 RLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 250
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 78/161 (48%), Gaps = 31/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 106 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQV 165
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G E L YPGG +PLGLA D E
Sbjct: 166 ILMGAVEGYRV---------AGNGPLGEAEDLL------YPGGSF-DPLGLATDPEAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 210 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADP 250
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 83 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 141
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 142 LADHLADP 149
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 30/156 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMD 58
M GVAG+LFTD L GI +LP WYEAGAV + +TL +++ + E R
Sbjct: 96 MIGVAGMLFTDALTQFGISDLPDWYEAGAVAQASSPFDLQTLIAIEIFVFATVEGFRIST 155
Query: 59 YISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAM 118
+ G +PG+ L+ +G+ ++ + +LKEIKNGRLAM
Sbjct: 156 WKKTG------------------KPGF-----LDIMGM-----DSPDMRLKEIKNGRLAM 187
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
A +G Q V +GP++ +L HL +P + T
Sbjct: 188 FAFVGFVAQYFVNGMGPVEGLLNHLENPQQNNVFST 223
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 78/156 (50%), Gaps = 32/156 (20%)
Query: 6 GILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGF 50
G F +LL G++ VW++AG+ F S ++ Q++LMG
Sbjct: 1 GASFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGA 60
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E R G G E ++P YPGG +PLGLA D E K+KE
Sbjct: 61 VEGYRVA-----------GGPLG-----EIVDPLYPGGSF-DPLGLADDPEAFAELKVKE 103
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 104 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 139
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 42 MLGVVGMLLPEVLTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 100
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+PG ++ F + +L E GYPGG + NPL A + E K KE+ NGR
Sbjct: 101 NPGCVNQDPIF--KQYSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
>gi|413922345|gb|AFW62277.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 131
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 3 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 61
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NG L +A
Sbjct: 62 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGELHCIA 114
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 34 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 93 LADHLADP 100
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 30/154 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MA VAGILFTDL+ LP ++ AGA ++ T TL ++++ + E KRY Y
Sbjct: 79 MAAVAGILFTDLV------GLPKFWLAGAEKYAL-DTPTLALIEVAVFAVLEGKRYDIY- 130
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+T E F +PLG+ + E KLKE+KNGRLAM+A
Sbjct: 131 ---KKTGETGFLSFAP--------------FDPLGM-----KSEEMKLKELKNGRLAMLA 168
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
+G QA+V GPI+ + +H++DP H I +
Sbjct: 169 FVGFCSQAAVRGKGPIECLTDHIADPGHVNIYTS 202
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 70/153 (45%), Gaps = 30/153 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGA------VEFKFASTRTLFIVQLLLMGFAETK 54
M GVAG L +LL + P+W G +E F TL + + M AE +
Sbjct: 86 MLGVAGALAVELLGYGNWYDAPLWAVTGGKATWFGIEVPF-DLNTLLAFEFVAMAAAEGQ 144
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
R G YPGG +PLG AKD A E KLKEIKNG
Sbjct: 145 R----------NDAGGVI------------YPGG-AFDPLGFAKDSSKAGELKLKEIKNG 181
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
RLAMVA LG Q + T GP+ + EHL++PW
Sbjct: 182 RLAMVAFLGFIAQHAATGKGPLAALGEHLANPW 214
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 34 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 93 LADHLADP 100
>gi|169201|gb|AAA33704.1| Major Cab protein [Petunia x hybrida]
Length = 129
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 49 EVIDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 107
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 108 LADHLADP 115
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T F I +++
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVI 183
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R + + LE L +PGGP +PLGLA D A
Sbjct: 184 LVGGAEYYRITNGLD------------LEDKL------HPGGPF-DPLGLASDPDQAAIL 224
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +M F+QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 276
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + G P VW++ GA+ +T F I +++
Sbjct: 125 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLD-GNTLNYFGNSIPINLVVAVIAEVV 183
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R + + LE L +PGGP +PLGLA D A
Sbjct: 184 LVGGAEYYRITNGLD------------LEDKL------HPGGPF-DPLGLASDPDQAAIL 224
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +M F+QA VT GP++N+ +HLSDP+ ++ ++ +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGA 276
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 185 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 139 ILEHLSDP 146
+ +H++DP
Sbjct: 244 LADHIADP 251
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 85 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 143
Query: 139 ILEHLSDP 146
+ +H++DP
Sbjct: 144 LADHIADP 151
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 185 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 243
Query: 139 ILEHLSDP 146
+ +H++DP
Sbjct: 244 LADHIADP 251
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 85 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 143
Query: 139 ILEHLSDP 146
+ +H++DP
Sbjct: 144 LADHIADP 151
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 81/161 (50%), Gaps = 33/161 (20%)
Query: 3 GVAGILFTDLL-RVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQLL 46
G GI+ +LL + G++ + VW++AGA F L Q++
Sbjct: 95 GTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSADGLNYLGNPSLVHAQSIIATVATQVI 154
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R ++ G A E +P YPGG +PLGLA D E
Sbjct: 155 LLGLAEGYR----VNGGP------------AGEITDPLYPGG-AFDPLGLADDPDTFAEL 197
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
K+KEIKNGRLA A LG FVQA VT GPI N+ +HL+DP+
Sbjct: 198 KVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADPF 238
>gi|169197|gb|AAA33702.1| Major Cab protein [Petunia x hybrida]
Length = 125
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 43 EVIDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 101
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 102 LADHLADP 109
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 34 EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 93 LADHLADP 100
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 34 EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 93 LADHLADP 100
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 81/165 (49%), Gaps = 32/165 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF-----------KFASTRTLFIV---QL 45
M G G + +LL G++ VW++AG+ F K + + V Q+
Sbjct: 109 MLGTVGCIVPELLERNGVKIGEAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQV 168
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R IS G E +P YPGG +PL LA D
Sbjct: 169 ILMGAIEGYR----ISGGPLG------------EPTDPLYPGGNF-DPLHLADDPEEFAI 211
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 150
K+KEIKNGRLAM AMLG +VQA VT GP++N+ +HL+DP+
Sbjct: 212 LKVKEIKNGRLAMFAMLGFYVQAIVTGKGPLENLYDHLADPFKNN 256
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 140 TILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 179
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 180 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 70/152 (46%), Gaps = 28/152 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA-----STRTLFIVQLLLMGFAETKR 55
M GVAG L +LL + P+W G F TL + + M AE +R
Sbjct: 50 MLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQR 109
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
G G+ YPGG +PLG AKD + E KLKE+KNGR
Sbjct: 110 -------------GDAGGVV---------YPGG-AFDPLGFAKDASKSGELKLKEVKNGR 146
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
LAMVA LG Q + T GPI + EHLS+PW
Sbjct: 147 LAMVAFLGFVAQHAATGKGPIAALGEHLSNPW 178
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 21/123 (17%)
Query: 30 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 89
V + + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 102 VPVPWGNLPTILAIEFLAIAFAEHQRTMEK---DPEKKK----------------YPGG- 141
Query: 90 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS-VTHVGPIDNILEHLSDPWH 148
+PLG +KD E+KLKEI+NGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 142 AFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHLADPWH 201
Query: 149 KTI 151
I
Sbjct: 202 NNI 204
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 44/71 (61%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
YPGG +PLGLA D +L EIK+ RLAMVA LG VQA+ T GP++N HLS
Sbjct: 211 YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 270
Query: 145 DPWHKTIIQTL 155
DP H TI T
Sbjct: 271 DPLHTTIFDTF 281
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 8/115 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 42 MLGVVGMLLPEVLTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 100
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+PG +G F + +L E GYPGG + NPL A + E K KE+ NGR
Sbjct: 101 NPGC-VNQGPIFK-QYSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ NG L +A
Sbjct: 155 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELANGELHCIA 207
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 76 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135
A L+G PG G +PLGLA+D N R + E+ NGR AM+ + G+ + +T G
Sbjct: 57 AYLDGSLPGDNG---FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 136 ID 137
I+
Sbjct: 114 IN 115
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 21/123 (17%)
Query: 30 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 89
V + + T+ ++ + + FAE +R M+ + K+ YPGG
Sbjct: 101 VPVPWGNLPTILAIEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG- 140
Query: 90 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 148
+PLG +KD E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 141 AFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLADPWH 200
Query: 149 KTI 151
I
Sbjct: 201 NNI 203
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 62/114 (54%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ V+ + + FAE +R M+ + K+ YPGG +PLG ++
Sbjct: 145 TILAVEFVAIAFAEHQRTMEK---DPEKKK----------------YPGG-AFDPLGFSR 184
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 185 DPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 238
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 27/157 (17%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGI+ T+ V GI P W+EAG ++ F L +Q +MG+ E KR ++
Sbjct: 77 MMAVAGIVGTE---VAGIE--PRWWEAGTEDYGFPPA-ALLAIQFPVMGYLENKRIQGWM 130
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+ GS G+ +P +P+G+ N KLKEIKNGR AM+A
Sbjct: 131 ATGSS--------------GVNETFP----FDPMGMGSKDANM---KLKEIKNGRAAMIA 169
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
+GI VQA V GP+ + +H+S+P+ + + N
Sbjct: 170 FVGIVVQAIVYREGPVAALKDHISNPFGCNMATNIMN 206
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 34 EVVDPLYPGGSF-DPLGLADDPXAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 93 LADHLADP 100
>gi|53793542|dbj|BAD52991.1| a/b-binding protein precursor-like [Oryza sativa Japonica Group]
Length = 98
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 16 EVVDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 74
Query: 139 ILEHLSDPWHKT 150
+ +HL+DP +
Sbjct: 75 LADHLADPVNNN 86
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ L + F E +R M+ + K+ YPGG +PLG +K
Sbjct: 142 TILVIEFLAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSK 181
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D +E+K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 182 DPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 235
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 34/172 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + L G P VW++ GA+ +T + F + +++
Sbjct: 125 MLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLD-GNTLSYFGKNIPINLVLAVVGEVV 183
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R + L+ + +PGGP +PL LAKD
Sbjct: 184 LLGGAEYYRITN------------------GLDFEDKLHPGGPF-DPLDLAKDPEQGALL 224
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
K+KEIKNGRLAM +M F+QA VT GP++N+ +HLSDP+ ++ +A +
Sbjct: 225 KVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIAGT 276
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 147 EVIDPLYPGGSF-DPLGLADDPEAFVELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 205
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 206 LADHLADP 213
>gi|323388125|gb|ADX60322.1| chlorophyll a-b binding protein of LHCII [Furcellaria lumbricalis]
Length = 86
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
EGL+P YPG +PLGLA D E K KEIKNGRLA +M G FVQA T GP+ N
Sbjct: 1 EGLDPLYPG-EAFDPLGLADDPDTFAELKTKEIKNGRLAQFSMFGYFVQALQTGKGPVQN 59
Query: 139 ILEHLSDPWH 148
EH++DPW+
Sbjct: 60 WSEHVADPWN 69
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 29/160 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGI TD L + G WYEAGA ++ F L VQ +MG E KR ++
Sbjct: 101 MMAVAGITTTDALNIGG-----PWYEAGAGDYDF-PIPALLAVQFPVMGILELKRIRGWL 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+ G G+ +P +P+G+ D +KEIKNGRLAM+A
Sbjct: 155 ATGKS--------------GVNSDFP----WDPMGMNNDAM-----AVKEIKNGRLAMIA 191
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANSGS 160
+G+ VQA V GP+ + +H+ DP+ + + + GS
Sbjct: 192 FVGVVVQAIVYRTGPVAALKDHVVDPFGCNMATNIMHIGS 231
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 78/161 (48%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTL--------------FIVQL 45
M G G +LL +G + VW++AGA F L VQ+
Sbjct: 94 MLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQV 153
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R ++ G A EGL+P YPG +PLGLA D E
Sbjct: 154 ILMGLIEGYR----VNGGP------------AGEGLDPLYPG-ESFDPLGLADDPDTFAE 196
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLA +M G FVQA VT GP+ N+ +HL++P
Sbjct: 197 LKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237
>gi|170421|gb|AAA34155.1| chlorophyll a/b-binding protein Cab-3A, partial [Solanum
lycopersicum]
gi|170426|gb|AAA34157.1| chlorophyll a/b-binding protein Cab-3B, partial [Solanum
lycopersicum]
Length = 116
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 34 EVVDPLYPGGSF-DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 92
Query: 139 ILEHLSDP 146
+ +H++DP
Sbjct: 93 LADHIADP 100
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ W++AG+ F + ++L Q +L +A
Sbjct: 86 MLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQV 145
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PL LA D E K+KEIKNG
Sbjct: 146 ILMGAV-------EGYRIAGGPLGEVTDPIYPGGSF-DPLALADDPEAFAELKVKEIKNG 197
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
RLAM +M G FVQA VT GP++N+ +HL++P
Sbjct: 198 RLAMFSMFGFFVQAIVTGKGPLENLADHLAEP 229
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
EGL+P YPG +PLGLA D E K+KEIKNGRLAM +M G +VQA VT GPI+N
Sbjct: 172 EGLDPLYPGDKF-DPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIEN 230
Query: 139 ILEHLSDPW 147
EH+++P+
Sbjct: 231 WAEHVANPF 239
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 79/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEF--------------KFASTRTLFIVQL 45
M G G + +LL G+ VW++AG+ F S + Q+
Sbjct: 92 MLGALGCVTPELLAKNGVSFGEAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQV 151
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
LLMG E R ++ G A EGL+ YPG +PLGLA D E
Sbjct: 152 LLMGLIEGYR----VNGGP------------AGEGLDALYPG-EAFDPLGLADDPDTFAE 194
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
++KEIKNGRLAM +M G FVQA VT GPI+N+ +HL++P
Sbjct: 195 LRVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLANP 235
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 64/123 (52%), Gaps = 21/123 (17%)
Query: 30 VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGP 89
V + + T+ ++ L + FAE +R M+ + K+ YPGG
Sbjct: 133 VPVPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG- 172
Query: 90 LLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 148
+PLG +KD E KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH
Sbjct: 173 AFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHLADPWH 232
Query: 149 KTI 151
I
Sbjct: 233 NNI 235
>gi|357496383|ref|XP_003618480.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355493495|gb|AES74698.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 180
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT GP++N
Sbjct: 98 EVVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTEKGPLEN 156
Query: 139 ILEHLSDP 146
+ +H++DP
Sbjct: 157 LADHIADP 164
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 118 MVAMLGIFVQASVTHVGPIDNILEHLSDP 146
M +M G FVQA VT GP++N+ +H++DP
Sbjct: 1 MFSMFGFFVQAIVTGKGPLENLADHITDP 29
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ L + F E +R M+ + K+ YPGG +PLG +K
Sbjct: 141 TILVIEFLSIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSK 180
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH-VGPIDNILEHLSDPWHKTI 151
D + E+K+KE+KNGRLA++A +GI VQ + GP++N+ HL+DPWH I
Sbjct: 181 DPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLADPWHNNI 234
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 61/114 (53%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 116 TILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 155
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E KLKEIKNGRLAM+A +G VQ S GP++N+ HL+DPWH I
Sbjct: 156 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 209
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 22/173 (12%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFASTRTLF-----------------I 42
M AGI+ + L+ G + W+E GA E T F +
Sbjct: 153 MLAAAGIIIPEGLQANGAAIKGGTWFETGA-EMLNGGTLNYFAVPWGIINNPLPLFLVVV 211
Query: 43 VQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRN 102
+++ L+G E R PG G F + GL+ YPGGP +PLGLA D
Sbjct: 212 IEVALLGAVERYRQSGEGPPGYSPGVGKF--DSSIFSGLDNLYPGGPF-DPLGLADDPET 268
Query: 103 AREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
E K+KEIKNGRLA++++LG VQ+ VT GP N +H++DP+ ++ +
Sbjct: 269 FAELKVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII 321
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ +++ L + F E +R M+ + K+ YPGG +PLG +K
Sbjct: 140 TILVIEFLAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSK 179
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D E+K+KEIKNGRLA++A +GI VQ S GP++N+ HL+DPWH I
Sbjct: 180 DPAKFHEYKVKEIKNGRLALLAFVGICVQQSAYPGTGPLENLATHLADPWHNNI 233
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 69 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 128
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+ E
Sbjct: 129 ILMGAVEGYRIA-----------GGPLG-----EVVDPLYPGGSF-DPLGLAEVPEAFAE 171
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KE+KNGRLAM +M G FV A VT GP++N+ +HL+DP
Sbjct: 172 LKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADP 212
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 77/159 (48%), Gaps = 32/159 (20%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AGA F S ++ Q+
Sbjct: 112 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQV 171
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E +P YPGG +PLGLA D E
Sbjct: 172 ILMGAVEGYRIA-----------GGPLG-----EITDPIYPGGSF-DPLGLADDPDAFAE 214
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
K+KE+KNGRLAM +M G F QA VT GPI+N+ +HL+
Sbjct: 215 LKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E +P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 162 EVTDPIYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 220
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 221 LNDHLADP 228
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA-SVTHVGPIDNILEHL 143
YPGGP +PLG AKD + E+KLKE+KNGRLA++A LG VQA + GP++N+ HL
Sbjct: 167 YPGGPF-DPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHL 225
Query: 144 SDPWHKTIIQTL 155
S+PW I +
Sbjct: 226 SNPWANNIANII 237
>gi|15241811|ref|NP_198197.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|332006417|gb|AED93800.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 173
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKN 113
R D I PGS + F L G + GYPGG +PLG +E + KEIKN
Sbjct: 71 RAPDIIKPGSVNTDPVF--PNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKN 128
Query: 114 GRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151
GRLAM+A++G + Q T GPIDN+ HL+DP H TI
Sbjct: 129 GRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 166
>gi|209778961|gb|ACI87791.1| putative chloroplast chlorophyll a/b-binding protein [Cupressus
sempervirens]
Length = 124
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
EGL+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GPI+N
Sbjct: 61 EGLDPLYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 119
Query: 139 ILEHL 143
+ +H
Sbjct: 120 LYDHF 124
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA-SVTHVGPIDNILEHL 143
YPGGP +PLG +K N E KLKEIKNGRLA+VA LG VQA + GP++N+ HL
Sbjct: 123 YPGGPF-DPLGFSKGA-NLEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLENLKTHL 180
Query: 144 SDPWHKTIIQTL 155
+DPWH TI L
Sbjct: 181 ADPWHNTIAHVL 192
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 15/160 (9%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------VQLLLMGFAE 52
M + G++ + L + G VW E G V + R F+ VQ+ LM E
Sbjct: 161 MLAIPGVVIPEALGLPGG----VWTETGKVFLDGETGRPFFLENPIVFAAVQVALMAGVE 216
Query: 53 TKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIK 112
R G +G F E+A +GL+P PGGPL + +A + ++ K+KEIK
Sbjct: 217 QFRSSGEGPAGFVPFKGKF--DESAFKGLDPINPGGPL-DFFNVASNPQDLALLKVKEIK 273
Query: 113 NGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
NGRLAM+AMLG+FVQ T GP N +H++DP+ +
Sbjct: 274 NGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFV 313
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 81/161 (50%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPV-WYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ W++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+ + E
Sbjct: 167 VLMGAVEGYRIA-----------GGPLG-----EIVDPLYPGGSF-DPLGLAERPQAFAE 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G FVQA VT GP++++ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADP 250
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 72/142 (50%), Gaps = 31/142 (21%)
Query: 23 VWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKE 68
VW++AG+ F+ S + Q++LMG E R
Sbjct: 94 VWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRV-----------N 142
Query: 69 GSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA 128
G G EGL+P +PG +PLGLA D E K+KEIKNGRLAM +M G +VQA
Sbjct: 143 GGPLG-----EGLDPLHPGDKF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQA 196
Query: 129 SVTHVGPIDNILEHLSDPWHKT 150
VT GPI+N +H++DP++ T
Sbjct: 197 IVTGKGPIENWADHVADPFNVT 218
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
+P YPGG +PLGLA D E K+KEIKNGRLAM +M G FVQA VT GP++N+ +
Sbjct: 50 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 108
Query: 142 HLSDP 146
HL+DP
Sbjct: 109 HLADP 113
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 80/161 (49%), Gaps = 32/161 (19%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 107 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 166
Query: 46 LLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNARE 105
+LMG E R G G E ++P YPGG +PLGLA+ +
Sbjct: 167 VLMGAVEGYRV-----------AGGPLG-----EIVDPLYPGG-RFDPLGLAERPQAFDA 209
Query: 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM +M G VQA VT GP++N+ +H++DP
Sbjct: 210 LKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADP 250
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 75/148 (50%), Gaps = 14/148 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F +LL G++ VW++AGA F + +L Q +L +A
Sbjct: 111 MLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQV 170
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M + EG E +P YPGG +PLGLA D E K+KE+KNG
Sbjct: 171 ILMGAV-------EGYRIAGGPLGEVTDPIYPGGSF-DPLGLADDPDAFAELKVKELKNG 222
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEH 142
RLAM +M G FVQA VT GPI+N+ +H
Sbjct: 223 RLAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 60/113 (53%), Gaps = 21/113 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + FAE +R M+ + K+ YPGG +PLG +K
Sbjct: 142 TILAIEFLAIAFAEQQRTMEK---DPEKKK----------------YPGG-AFDPLGFSK 181
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKT 150
D E KLKEIKNGRLAM+A +G VQ S GP++N HL+DPWH T
Sbjct: 182 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTHLADPWHNT 234
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILE 141
+P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT GP++N+ +
Sbjct: 74 DPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 132
Query: 142 HLSDP 146
HL+DP
Sbjct: 133 HLADP 137
>gi|375152320|gb|AFA36618.1| chlorophyll a/b binding protein, partial [Lolium perenne]
Length = 91
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT GP++N
Sbjct: 9 EIVDPLYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 67
Query: 139 ILEHLSDPWHKT 150
+ +HL+DP +
Sbjct: 68 LADHLADPVNNN 79
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 42 MLGVVGMLLPEVLTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 100
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+PG ++ + +L E GYPGG + NPL A + E K KE+ NGR
Sbjct: 101 NPGCVNQDPIL--KQYSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELANGR 148
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 10 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 61
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 21/118 (17%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + F E +R M+ + K+ YPGG +PLG +K
Sbjct: 140 TVLAIEFLAISFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSK 179
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTIIQTL 155
D + E+K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I L
Sbjct: 180 DPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVL 237
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 78 LEGLEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
L G + GYPGG +PLG +E + KEIKNGRLAM++++G + QA T GPI
Sbjct: 152 LTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLSVMGAWFQAEYTGTGPI 211
Query: 137 DNILEHLSDPWHKTIIQTLAN 157
DN+L HL+DP H T+ ++
Sbjct: 212 DNLLAHLADPGHATVFAAFSS 232
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 25/152 (16%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA-----STRTLFIVQLLLMGFAETKR 55
MAGVAG L +LL + P+W G + TL ++ + + AE +R
Sbjct: 83 MAGVAGALGAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAEAQR 142
Query: 56 YMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGR 115
+ P ++ ++ YPGG +PLG +KD + E KLKE+KNGR
Sbjct: 143 NAE---PDAEKRK----------------YPGG-AFDPLGFSKDSKVLEENKLKELKNGR 182
Query: 116 LAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
LAM+A +G Q + T GP++ + HL+DPW
Sbjct: 183 LAMLAFVGFIAQHAATGKGPLEALKLHLADPW 214
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTL 155
DP+ ++ +
Sbjct: 151 DPFGNNLLTVI 161
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 21/118 (17%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + F E +R M+ + K+ YPGG +PLG +K
Sbjct: 140 TVLAIEFLAISFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSK 179
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTIIQTL 155
D + E+K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I L
Sbjct: 180 DPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVL 237
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHL 143
YPGG +PLG +KD + E+KLKE+KNGRLA++A LG QA+ GP+ N+ HL
Sbjct: 170 YPGG-AFDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYPGTGPLQNLATHL 228
Query: 144 SDPWHKTIIQTL 155
+DPWH I +
Sbjct: 229 ADPWHNNIANII 240
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 21/114 (18%)
Query: 39 TLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAK 98
T+ ++ L + F E +R M+ + K+ YPGG +PLG +K
Sbjct: 142 TILAIEFLAISFVEHQRSMEK---DPEKKK----------------YPGG-AFDPLGYSK 181
Query: 99 DIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
D + E+K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 182 DPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLADPWHNNI 235
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F+QA VT GP++N+ H+S
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLASHMS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 76/162 (46%), Gaps = 33/162 (20%)
Query: 1 MAGVAGILFTDLLRVTGIREL--PVWYEAGAVEF--------------KFASTRTLFIVQ 44
M G G + +LL E VW++AGA F S + Q
Sbjct: 91 MLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSILAILGCQ 150
Query: 45 LLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAR 104
++LMG AE R G G E L+ +PGG +PLGLA D
Sbjct: 151 VVLMGGAEAFRV-----------NGGPLG-----EDLDKLHPGG-AFDPLGLADDPDTFS 193
Query: 105 EWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
E K+KEIKNGRLAM +M G FVQA VT GP++N EH++DP
Sbjct: 194 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADP 235
>gi|339716018|gb|AEJ88256.1| putative light harvesting chlorophyll a/b-binding protein [Wolffia
australiana]
Length = 92
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E ++P YPGG +PL LA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 10 EVVDPLYPGGSF-DPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 68
Query: 139 ILEHLSDPWHKT 150
+ +HL+DP +
Sbjct: 69 LADHLADPVNNN 80
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 74/145 (51%), Gaps = 14/145 (9%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETK 54
M G G +F ++L G++ VW++AG+ F + L Q +L +A
Sbjct: 29 MLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQV 88
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
M I EG G EGL+ YPGG +PLGLA D E K+KE+KNG
Sbjct: 89 VLMGLI-------EGYRVGGGPLGEGLDKVYPGGSF-DPLGLADDPEAFAELKVKELKNG 140
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNI 139
RLAM +M G FVQA VT GPI+N+
Sbjct: 141 RLAMFSMFGFFVQAIVTGKGPIENL 165
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG VE+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 34 MLGVVGMLLPEVLTSIGIINVPKWYDAGKVEY-FASSSTLFVIEFILFHYVEIRRWQDIK 92
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 113
+PG ++ F + +L E GYPGG + NPL A + E K KE+ N
Sbjct: 93 NPGCVNQDPIF--KQYSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 71/153 (46%), Gaps = 30/153 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGA------VEFKFASTRTLFIVQLLLMGFAETK 54
M GVAG L +LL + P+W G +E F L + + M AE +
Sbjct: 86 MLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPF-DLNALLAFEFVAMAAAEGQ 144
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
R G G+ YPGG +PLG AKD + E KLKEIKNG
Sbjct: 145 R-------------GDAGGVV---------YPGG-AFDPLGFAKDSSKSGELKLKEIKNG 181
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
RLAMVA LG Q + T GPI + EHL++PW
Sbjct: 182 RLAMVAFLGFVAQHAATGKGPIAALGEHLANPW 214
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG E+ FAS+ TLF+++L+L + E +R+ D
Sbjct: 34 MLGVVGMLLPEVLTSIGIINVPKWYDAGKAEY-FASSSTLFVIELILFHYVEVRRWQDIK 92
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 113
+PG ++ F + +L E GYPGG + NPL A + E K KE+ N
Sbjct: 93 NPGCVNQDPIF--KQYSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 69/139 (49%), Gaps = 30/139 (21%)
Query: 22 PVWYEAGAVEF-----------KFASTRTLFIV---QLLLMGFAETKRYMDYISPGSQTK 67
PVW++AGA F +++ V Q++LMG E R
Sbjct: 129 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYR------------ 176
Query: 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQ 127
GL EG + YPGG +PLGLA D E K+KEIKNGRLAM +M FVQ
Sbjct: 177 ---INGLPGVGEGNDL-YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFRFFVQ 232
Query: 128 ASVTHVGPIDNILEHLSDP 146
A VT G ++N+L+H+ +P
Sbjct: 233 AIVTGKGSLENLLDHIDNP 251
>gi|356532722|ref|XP_003534920.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 125
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E +P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT GP++N
Sbjct: 43 EVTDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 101
Query: 139 ILEHLSDP 146
+ +HL+DP
Sbjct: 102 LADHLADP 109
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 71/153 (46%), Gaps = 30/153 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGA------VEFKFASTRTLFIVQLLLMGFAETK 54
M GVAG L +LL + P+W G +E F L + + M AE +
Sbjct: 82 MLGVAGSLAVELLGYGNWYDAPLWAVNGGKATWFGIEVPF-DLNALLAFEFVAMAAAEGQ 140
Query: 55 RYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNG 114
R G G+ YPGG +PLG AKD + E KLKEIKNG
Sbjct: 141 R-------------GDAGGVV---------YPGG-AFDPLGFAKDSSKSGELKLKEIKNG 177
Query: 115 RLAMVAMLGIFVQASVTHVGPIDNILEHLSDPW 147
RLAMVA LG Q + T GPI + EHL++PW
Sbjct: 178 RLAMVAFLGFVAQHAATGKGPIAALGEHLANPW 210
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 30/154 (19%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
MA V GILFTD + LP ++ AGA ++ +TL ++++ + E KRY Y
Sbjct: 78 MAAVVGILFTDAV------GLPKFWTAGAEKYAL-DNQTLALIEVAVFAVLEGKRYEIY- 129
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+T E F +P+G+ + E KLKE+KNGRLAM+A
Sbjct: 130 ---KKTGETGFLSFAP--------------FDPMGM-----KSEEMKLKELKNGRLAMLA 167
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQT 154
LG QA+V GPI+ + HL+DP H I +
Sbjct: 168 FLGFCSQAAVYGKGPIETLQLHLADPGHNNIYTS 201
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 74/146 (50%), Gaps = 13/146 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++L G+ P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 96 MLGVAGMLIPEVLTKAGLINAPQWYDAGKSEY-FASSSTLFVIEFILFHYVEIRRWQDIK 154
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVA 120
+PGS ++ F +L E GYPG + NPL A + E K KE+ N A
Sbjct: 155 NPGSVNQDPIFKSY--SLPPHECGYPGS-VFNPLNFAPTL----EAKEKELAN---AQRH 204
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDP 146
G Q + V P+ H DP
Sbjct: 205 RQGALRQPAAAPVRPMAQ--HHHPDP 228
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 76 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135
A L+G PG G +PLGLA+D N R + E+ NGR AM+ + G+ + +T G
Sbjct: 57 AYLDGSLPGDNG---FDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 136 ID 137
I+
Sbjct: 114 IN 115
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 78/160 (48%), Gaps = 34/160 (21%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFI--------------VQLL 46
M G GI+ +LL T W++AGA F + L + VQ++
Sbjct: 122 MLGALGIVVPELLDQT---NHVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQVI 178
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
LMG E R ++ G A EGL+ YPG +PLGLA D E
Sbjct: 179 LMGAIEGYR----VNGGP------------AGEGLDKVYPG-ESFDPLGLADDPDTFAEL 221
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
K+KEIKNGRLAM + G FVQA VT GPI N+ +HL++P
Sbjct: 222 KVKEIKNGRLAMFSNFGFFVQAIVTGKGPIANLNDHLANP 261
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 29/158 (18%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M VAGI+ T+ + GI P W+EAG ++ F + L VQL +MG+ E KR ++
Sbjct: 50 MMAVAGIVGTE---IAGIE--PRWWEAGTEDYGF-PPQALLAVQLPVMGYLENKRIQGWL 103
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGL-AKDIRNAREWKLKEIKNGRLAMV 119
+ GS G+ +P +P+G+ +KD + KLKEIKNGR AM+
Sbjct: 104 ATGSS--------------GVNETFP----FDPMGMGSKD----EKMKLKEIKNGRAAMI 141
Query: 120 AMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157
A +GI VQ V GP+ + +H+++P+ + + N
Sbjct: 142 AFVGIVVQGIVYREGPVAALKDHVANPFGCNMATNIMN 179
>gi|351066141|gb|AEQ39045.1| putative light-harvesting complex II chlorophyll-a/b binding
protein [Wolffia arrhiza]
Length = 84
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 79 EGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDN 138
E +P YPGG +PL LA+D E K+KEIKNGRLAM +M G FVQA VT GP++N
Sbjct: 2 EVTDPLYPGGSF-DPLNLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 60
Query: 139 ILEHLSDPWHKT 150
+ +HL+DP +
Sbjct: 61 LADHLADPVNNN 72
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GV G+L ++L GI +P WY+AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 34 MLGVVGMLLPEVLTSIGIINVPKWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIK 92
Query: 61 SPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKN 113
+PG ++ F + +L E GYPGG + NPL A + E K KE+ N
Sbjct: 93 NPGCVNQDPIF--KQCSLAPHECGYPGG-IFNPLNFAPTL----EAKEKELAN 138
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 86 PGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
PG +PLGLA+D N R + E+ NGR AM+ ++G+ + +T +G I+
Sbjct: 2 PGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIIN 53
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHL 143
YPGG +PLG +KD + E+K+KEIKNGRLA++A +G VQ S GP++N+ HL
Sbjct: 167 YPGG-AFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 144 SDPWHKTI 151
+DPWH I
Sbjct: 226 ADPWHNNI 233
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 77/156 (49%), Gaps = 32/156 (20%)
Query: 6 GILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGF 50
G +F +LL G++ VW++AG+ F S ++ Q++LMG
Sbjct: 110 GCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGA 169
Query: 51 AETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKE 110
E Y G + E ++P Y GG +PLGL D E K+KE
Sbjct: 170 VE-----GYHVAGGRLGEV-----------VDPLYLGGSF-DPLGLGDDPERFAELKVKE 212
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
IKNGRLAM +M G FVQA VT GPI+N+ +HL+DP
Sbjct: 213 IKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDP 248
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 34/149 (22%)
Query: 15 VTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGS 64
+TGI W +AG VE S+ TL +++L++G+ E +R
Sbjct: 116 LTGI----TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR--------- 162
Query: 65 QTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGI 124
A L+ + YPGG +PLGLA D +L EIK+ RLAMV LG
Sbjct: 163 ----------NAELDTEKRLYPGG-TFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGF 211
Query: 125 FVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
VQA+VT GP++N + HLSDP H TI+
Sbjct: 212 AVQAAVTGKGPLNNWVTHLSDPLHTTILD 240
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 21/119 (17%)
Query: 34 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNP 93
+ + T+ ++ L + F E +R M+ + K+ YPGG +P
Sbjct: 135 WGTLPTILAIEFLAIAFVEHQRSMEK---DPEKKK----------------YPGG-AFDP 174
Query: 94 LGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
LG +KD + E K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWHK I
Sbjct: 175 LGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHKNI 233
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 34/157 (21%)
Query: 1 MAGVAGILFTDLLRVTGIRELP--VWYEAGAVEFKFASTRTLF------------IVQLL 46
M G AG + + L G P VW++ GA+ +T F I +++
Sbjct: 13 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVLAVIAEVV 71
Query: 47 LMGFAETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREW 106
L+G AE R + L+ + +PGGP +PLGLAKD
Sbjct: 72 LLGGAEYYRITN------------------GLDFEDKLHPGGPF-DPLGLAKDPEQGALL 112
Query: 107 KLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHL 143
K+KEIKNGRLAM AMLG F+QA VT GP++N+ +HL
Sbjct: 113 KVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|449527137|ref|XP_004170569.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like,
partial [Cucumis sativus]
Length = 79
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 83 PGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 142
P YPGG +PLGLA D E K+KE+KNGRLAM +M G FVQA VT GP++N+ +H
Sbjct: 1 PIYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH 59
Query: 143 LSDP 146
L+DP
Sbjct: 60 LTDP 63
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+PGGP +PLGLAKD K+KEIKNGRLAM +M F++A VT GP++N+ HLS
Sbjct: 92 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFSMFAFFIKAYVTGQGPVENLASHLS 150
Query: 145 DPWHKTIIQTLANS 158
DP+ ++ ++ +
Sbjct: 151 DPFGNNLLTVISGN 164
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 85 YPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHL 143
YPGG +PLG +KD + E+K+KEIKNGRLA++A +GI VQ + GP++N+ HL
Sbjct: 166 YPGG-AFDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYPGTGPLENLATHL 224
Query: 144 SDPWHKTIIQTL 155
+DPWH I L
Sbjct: 225 ADPWHNNIGDVL 236
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,548,865,105
Number of Sequences: 23463169
Number of extensions: 99917756
Number of successful extensions: 223054
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 219992
Number of HSP's gapped (non-prelim): 2335
length of query: 160
length of database: 8,064,228,071
effective HSP length: 122
effective length of query: 38
effective length of database: 9,496,688,749
effective search space: 360874172462
effective search space used: 360874172462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 71 (32.0 bits)