BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031425
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 88/157 (56%), Gaps = 12/157 (7%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 19 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 77
Query: 61 SPGSQTKEGSF--FGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAM 118
+PGS ++ F + L A AK+ KEI NGRLAM
Sbjct: 78 NPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKE---------KEIANGRLAM 128
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+A LG +Q +VT GP DN+L+H+SDPWH TI+QTL
Sbjct: 129 LAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 88/160 (55%), Gaps = 13/160 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 103 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 161
Query: 61 SPGSQTKEGSF--FGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAM 118
+PGS ++ F + L A AK+ KEI NGRL M
Sbjct: 162 NPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKE---------KEIANGRL-M 211
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158
+A LG +Q +VT GP DN+L+H+SDPWH TI+QTL +
Sbjct: 212 LAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGGN 251
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 97 AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
A+D N R + E+ NGR AM+ + G+ + T +G I+
Sbjct: 82 AEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M GVAG+L ++ GI +P WY AG E+ FAS+ TLF+++ +L + E +R+ D
Sbjct: 23 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIK 81
Query: 61 SPGSQTKEGSF--FGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAM 118
+PGS ++ F + L A AK+ KEI NGRL M
Sbjct: 82 NPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKE---------KEIANGRL-M 131
Query: 119 VAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
+A LG +Q +VT GP DN+L+H+SDPWH TI+Q
Sbjct: 132 LAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQ 166
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 97 AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137
A+D N R + E+ NGR AM+ + G+ + T +G I+
Sbjct: 2 AEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 42
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 90/165 (54%), Gaps = 12/165 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G G + ++L G+ LP W+ G + +A + TLF+ ++ LMGFA
Sbjct: 111 MLGAVGAIAPEILGKAGLIPQETALP-WFRTGFIPPAGTYNYWADSYTLFVFEMALMGFA 169
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXX-AKDIRNAREWKLKE 110
E +R+ D+ PGS K+ F GLE KD ++ ++ KLKE
Sbjct: 170 EHRRFQDWAKPGSMGKQ-YFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKE 228
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155
+KNGRLAM+A+LG FVQA VT VGP N+L+HL+DP H I+ +L
Sbjct: 229 VKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 21 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 79
Query: 61 SPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVA 120
+PG + F + A + +E + KEIKNGRLAM+A
Sbjct: 80 NPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASP-QKLKELRTKEIKNGRLAMLA 138
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152
++G + Q T GPIDN+ HL+DP H TI
Sbjct: 139 VMGAWFQHIYTGTGPIDNLFAHLADPGHATIF 170
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 2/148 (1%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 41 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 99
Query: 61 SPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVA 120
+PG + F + + +E + KEIKNGRLAM+A
Sbjct: 100 NPGCVNTD-PIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLA 158
Query: 121 MLGIFVQASVTHVGPIDNILEHLSDPWH 148
++G + Q T GPIDN+ HL+DP H
Sbjct: 159 VMGAWFQHIYTGTGPIDNLFAHLADPGH 186
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 84/154 (54%), Gaps = 12/154 (7%)
Query: 1 MAGVAGILFTDLLRVTGI----RELPVWYEAGAVEFK-----FASTRTLFIVQLLLMGFA 51
M G AG + ++L G+ LP W++ G + +A TLF++++ LMGFA
Sbjct: 14 MLGAAGAIAPEILGKAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFA 72
Query: 52 ETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXX-AKDIRNAREWKLKE 110
E +R D+ +PGS K+ F GLE KD ++ +E KLKE
Sbjct: 73 EHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKE 131
Query: 111 IKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLS 144
+KNGRLAM+A+LG F+Q VT VGP N+L+HL+
Sbjct: 132 VKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 92.0 bits (227), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 4/153 (2%)
Query: 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYI 60
M G AGI + L GI P WY AG E+ F T TLFIV+L+ +G+AE +R+ D +
Sbjct: 114 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADIL 172
Query: 61 SPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVA 120
+PG + F + A + +E + KEIKNGRLAM+A
Sbjct: 173 NPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASP-QKLKELRTKEIKNGRLAMLA 231
Query: 121 MLGIFVQASVTHVGPIDNIL-EHLSDPWHKTII 152
++G + Q T GPIDN+ HL+DP H TI
Sbjct: 232 VMGAWFQHIYTGTGPIDNLFAAHLADP-HATIF 263
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 23 VWYEAGAVEFK-----FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAA 77
W++ G + +A TLF++++ LMGFAE +R+ D+ PGS K+ F GLE
Sbjct: 52 AWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQ-YFLGLEKG 110
Query: 78 XXXXXXXXXXXXXXXXXXX-AKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136
KD ++ +E KLKE+KNGRLAM+A+LG F+Q VT VGP
Sbjct: 111 FGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPY 170
Query: 137 DN 138
N
Sbjct: 171 QN 172
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 48/169 (28%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 132
Query: 46 LLMGFAETKR--------YMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXA 97
+LMG E R +D + PG GSF L A
Sbjct: 133 ILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLA 167
Query: 98 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
D E K+KEIKNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 168 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 75/169 (44%), Gaps = 48/169 (28%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 132
Query: 46 LLMGFAETKR--------YMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXA 97
+LMG E R +D + PG GSF L A
Sbjct: 133 ILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLA 167
Query: 98 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
D E K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 168 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 75/169 (44%), Gaps = 48/169 (28%)
Query: 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFKFA--------------STRTLFIVQL 45
M G G +F +LL G++ VW++AG+ F S ++ Q+
Sbjct: 73 MLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQV 132
Query: 46 LLMGFAETKR--------YMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXA 97
+LMG E R +D + PG GSF L A
Sbjct: 133 ILMGAVEGYRIAGGPLGEVVDPLYPG-----GSFDPL--------------------GLA 167
Query: 98 KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDP 146
D E K+KE+KNGRLAM +M G FVQA VT GP++N+ +HL+DP
Sbjct: 168 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 216
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 21/120 (17%)
Query: 33 KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXX 92
+ + T+ ++ L + F E +R M+ + G+F L
Sbjct: 134 PWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL------------------ 175
Query: 93 XXXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
+KD + E K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 176 --GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 233
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 34 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXX 93
+ + T+ ++ L + F E +R M+ + G+F L
Sbjct: 87 WGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL------------------- 127
Query: 94 XXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWHKTI 151
+KD + E K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH I
Sbjct: 128 -GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 185
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 21/116 (18%)
Query: 34 FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAAXXXXXXXXXXXXXXXX 93
+ + T+ ++ L + F E +R M+ + G+F L
Sbjct: 75 WGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPL------------------- 115
Query: 94 XXXAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASV-THVGPIDNILEHLSDPWH 148
+KD + E K+KEIKNGRLA++A +G VQ S GP++N+ HL+DPWH
Sbjct: 116 -GYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWH 170
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 34/149 (22%)
Query: 15 VTGIRELPVWYEAGAVEFKFAST----------RTLFIVQLLLMGFAETKRYMDYISPGS 64
+TGI W +AG VE S+ TL +++L++G+ E +R + +
Sbjct: 116 LTGI----TWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKR 171
Query: 65 QTKEGSFFGLEAAXXXXXXXXXXXXXXXXXXXAKDIRNAREWKLKEIKNGRLAMVAMLGI 124
G+F L A D +L EIK+ RLAMV LG
Sbjct: 172 LYPGGTFDPL--------------------GLASDPEKKPILQLAEIKHARLAMVGFLGF 211
Query: 125 FVQASVTHVGPIDNILEHLSDPWHKTIIQ 153
VQA+VT GP++N + HLSDP H TI+
Sbjct: 212 AVQAAVTGKGPLNNWVTHLSDPLHTTILD 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,762,912
Number of Sequences: 62578
Number of extensions: 108214
Number of successful extensions: 210
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 18
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)