Query 031425
Match_columns 160
No_of_seqs 142 out of 1048
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00147 light-harvesting comp 100.0 2.9E-43 6.4E-48 291.7 12.0 158 1-158 95-252 (252)
2 PLN00101 Photosystem I light-h 100.0 8.4E-41 1.8E-45 276.7 10.2 148 1-156 103-250 (250)
3 PLN00098 light-harvesting comp 100.0 2.4E-40 5.2E-45 276.1 11.7 154 1-157 112-266 (267)
4 PLN00097 photosystem I light h 100.0 1.1E-39 2.5E-44 269.0 10.9 150 1-152 94-243 (244)
5 PLN00048 photosystem I light h 100.0 1.6E-39 3.5E-44 270.8 8.9 156 1-157 97-261 (262)
6 PLN00025 photosystem II light 100.0 1.5E-36 3.2E-41 252.8 10.4 139 1-156 103-256 (262)
7 PLN00099 light-harvesting comp 100.0 1.6E-35 3.5E-40 244.5 10.0 133 1-159 94-240 (243)
8 PLN00187 photosystem II light- 100.0 2.4E-35 5.2E-40 247.9 9.8 131 1-156 145-285 (286)
9 PLN00171 photosystem light-ha 100.0 4E-35 8.7E-40 249.4 10.2 147 1-157 160-324 (324)
10 PLN00100 light-harvesting comp 100.0 1.2E-34 2.7E-39 239.1 8.6 125 1-155 85-209 (246)
11 PLN00170 photosystem II light- 100.0 3.1E-30 6.6E-35 214.1 8.7 133 1-140 107-254 (255)
12 PLN00089 fucoxanthin-chlorophy 99.9 5.2E-26 1.1E-30 184.6 8.1 114 1-136 87-207 (209)
13 PLN00120 fucoxanthin-chlorophy 99.9 5.2E-24 1.1E-28 172.1 8.6 116 1-136 76-198 (202)
14 PF00504 Chloroa_b-bind: Chlor 99.9 1.1E-22 2.4E-27 157.1 7.9 111 1-129 41-156 (156)
15 PLN00098 light-harvesting comp 99.7 3.9E-18 8.4E-23 142.8 5.9 72 81-152 75-153 (267)
16 PLN00170 photosystem II light- 99.7 1.9E-17 4.2E-22 137.8 6.5 74 52-134 50-123 (255)
17 PLN00101 Photosystem I light-h 99.7 1.6E-17 3.5E-22 138.0 5.5 56 81-136 66-121 (250)
18 PLN00147 light-harvesting comp 99.7 7.1E-17 1.5E-21 134.3 5.3 54 81-134 58-111 (252)
19 PLN00097 photosystem I light h 99.6 1.5E-16 3.2E-21 131.8 5.3 55 81-135 57-111 (244)
20 PLN00025 photosystem II light 99.6 1.4E-16 3.1E-21 133.1 5.2 54 81-134 66-119 (262)
21 PLN00171 photosystem light-ha 99.6 1.4E-16 3E-21 136.2 5.1 54 81-134 123-176 (324)
22 PLN00187 photosystem II light- 99.6 3.7E-16 8.1E-21 131.9 4.8 52 82-133 66-160 (286)
23 PLN00100 light-harvesting comp 99.6 4.9E-16 1.1E-20 128.8 5.0 51 81-131 48-98 (246)
24 PLN00099 light-harvesting comp 99.6 6.7E-16 1.5E-20 128.0 4.5 52 81-132 57-108 (243)
25 PLN00048 photosystem I light h 99.5 3.7E-15 8E-20 124.7 4.6 56 81-137 55-116 (262)
26 PLN00089 fucoxanthin-chlorophy 99.5 1.6E-14 3.4E-19 117.6 5.8 49 86-134 54-103 (209)
27 PF00504 Chloroa_b-bind: Chlor 99.5 1.8E-14 3.8E-19 111.2 5.5 51 82-133 6-56 (156)
28 PLN00120 fucoxanthin-chlorophy 99.3 3E-12 6.6E-17 103.7 3.2 43 86-129 43-87 (202)
29 PHA02337 putative high light i 98.0 5.3E-06 1.2E-10 49.5 2.8 27 108-134 4-30 (35)
30 PLN00084 photosystem II subuni 97.7 2.7E-05 5.8E-10 62.0 2.8 45 102-146 131-176 (214)
31 PLN00014 light-harvesting-like 97.4 0.0001 2.2E-09 61.0 3.0 38 106-143 159-196 (250)
32 PLN02449 ferrochelatase 40.6 19 0.0004 33.2 2.0 21 116-136 463-483 (485)
33 PHA00649 hypothetical protein 29.0 83 0.0018 21.8 3.2 30 99-129 32-68 (83)
34 PHA00003 B internal scaffoldin 26.1 1.1E+02 0.0023 22.9 3.5 39 82-123 41-79 (120)
35 COG3924 Predicted membrane pro 20.8 54 0.0012 22.8 1.1 24 4-27 23-48 (80)
No 1
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=2.9e-43 Score=291.72 Aligned_cols=158 Identities=89% Similarity=1.426 Sum_probs=141.5
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++.+|+...|.|++++...+.+++.++++++|+++||++|.+|+.++.+||+...++.|.+.+....+
T Consensus 95 MlA~~G~l~~e~~~~~g~~~~p~w~~ag~~~~~~~~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~ 174 (252)
T PLN00147 95 MAGVAGILFTDLLRVTGIRNLPVWYEAGAVKFEFASTRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEG 174 (252)
T ss_pred HHHHhhhhHHHHhccCCCcCCcchhhcccchhccccchHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccc
Confidence 99999999999999888776788999887665566667888999999999999999999899887777777665554455
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhHhhhcccc
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLANS 158 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~~~~~~~~ 158 (160)
.++.||||++|||+||.+|+++++++|++|||||||||+|++|+++|+++||++|++||.+|++||+++||++++.++
T Consensus 175 ~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 175 LEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred cCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 667899999999999999999999999999999999999999999999999999999999999999999999998775
No 2
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=276.67 Aligned_cols=148 Identities=49% Similarity=0.874 Sum_probs=127.9
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++.+|.+..|.||+++...| +....+++++|+++||++|++|++++++||+...++.|.+. ....
T Consensus 103 Mla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~-~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~--~~~~ 179 (250)
T PLN00101 103 MLGVAGMLLPEVFTKIGIINAPQWYDAGKAEY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQY--SLPP 179 (250)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCccccccchhh-cccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccccc--ccCC
Confidence 99999999999999888877788999987665 55567889999999999999999999899987666665321 1223
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhHhhhcc
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~~~~~~ 156 (160)
.|..|||+. ||||||+++ +++|+||||||||||+|++|+++|+.+||++|++||.+|++||+++||++|+.
T Consensus 180 gd~~YPGG~-FDPLgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 180 NEVGYPGGI-FNPLNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred ccccCCCCc-cCccCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 466799997 999999865 37899999999999999999999999999999999999999999999999863
No 3
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=2.4e-40 Score=276.12 Aligned_cols=154 Identities=41% Similarity=0.680 Sum_probs=130.7
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++.+|.+..+.||+++...| +.+..+++++|+++||++|.+||.++.++|....++.|.+. ...+
T Consensus 112 MLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~-~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~--~~~~ 188 (267)
T PLN00098 112 MLAVAGILIPECLERLGFIENFSWYDAGAREY-FADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNK--TNPK 188 (267)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccchhh-ccCchHHHHHHHHHHHHHHHHHhhcccCCcccccccccccc--ccCC
Confidence 99999999999988778765567999987655 45556788899999999999999998888876555443221 1122
Q ss_pred CCCCCCCCCCCccCCCcc-cHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhHhhhccc
Q 031425 81 LEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLAN 157 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~-~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~~~~~~~ 157 (160)
.+..||||++|||+||.+ |+++++++|++|||||||||+|++|+++|+.+||++|++||.+|++||+++||++++.+
T Consensus 189 ~d~~yPGg~~FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 189 PDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCCCCCCCccCCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 356799999999999975 89999999999999999999999999999999999999999999999999999998764
No 4
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=1.1e-39 Score=268.97 Aligned_cols=150 Identities=41% Similarity=0.694 Sum_probs=127.5
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++.+|+...+.||+++.....+....+++++|+++||++|++||.++++||++..++.| +.+.....
T Consensus 94 MLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~-~~~~~~~~ 172 (244)
T PLN00097 94 MLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLF-GANKGDTN 172 (244)
T ss_pred HHHHhhhhHHHHhcCCCcccCCccccCCcchhccccchhHHHHHHHHHHHHHHHHhhcccCCCcccccccc-ccccCCcc
Confidence 99999999999998888765678999986541134456788999999999999999999889887655543 22221222
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhHh
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTII 152 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~~ 152 (160)
.|..|||+. |||+||.+|+++++++|++|||||||||+|++|+++|+.+||++|++||.+|++||+++||+
T Consensus 173 ~d~gYPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 173 TDVGYPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred cccCCCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 456799997 99999999999999999999999999999999999999999999999999999999999986
No 5
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=1.6e-39 Score=270.82 Aligned_cols=156 Identities=47% Similarity=0.877 Sum_probs=128.3
Q ss_pred CcccchhhhhhhhccCCCCCC---chhhhcchh----hhc-ccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCccc
Q 031425 1 MAGVAGILFTDLLRVTGIREL---PVWYEAGAV----EFK-FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFF 72 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~---~~w~~ag~~----~~~-~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~ 72 (160)
|||++|+++||+++..|.+.. ..||+++.. .+. +....+++++|+++||++|++|++++.+||+++. ..|.
T Consensus 97 MLa~~G~lv~Ell~~~g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~-~~~~ 175 (262)
T PLN00048 97 MLGAAGAIAPEILGKAGLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGK-QYFL 175 (262)
T ss_pred HHHHhhHHHHHHhccCCccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccc-cccc
Confidence 999999999999886665421 259998742 111 3344567888999999999999999889987653 3444
Q ss_pred chhhhccCC-CCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhH
Q 031425 73 GLEAALEGL-EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTI 151 (160)
Q Consensus 73 g~~~~~~~~-~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~ 151 (160)
+.++.+.+. ++.||||++|||+||++|+++++++|++|||||||||+|++||++|+++||++|++||.+|++||+++||
T Consensus 176 ~~~~~~~~~~d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni 255 (262)
T PLN00048 176 GLEKGLGGSGNPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNV 255 (262)
T ss_pred cchhccccccccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccc
Confidence 443333332 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccc
Q 031425 152 IQTLAN 157 (160)
Q Consensus 152 ~~~~~~ 157 (160)
++|+..
T Consensus 256 ~~~~~~ 261 (262)
T PLN00048 256 LTNLKF 261 (262)
T ss_pred cccccc
Confidence 999753
No 6
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=252.83 Aligned_cols=139 Identities=44% Similarity=0.717 Sum_probs=115.1
Q ss_pred CcccchhhhhhhhccCCCC-CCchhhhcchhhhc------c--------cChhHHHHHHHHHHHHHHHHhhccccCCCCC
Q 031425 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK------F--------ASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 65 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~-~~~~w~~ag~~~~~------~--------~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~ 65 (160)
|||++||++||+++..|+. ..+.||+++...+. + .++.+++++|+++||++|.+|+.+. +..
T Consensus 103 MLa~~G~i~~e~l~~~g~~~~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~--~~~- 179 (262)
T PLN00025 103 MLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGG--PLG- 179 (262)
T ss_pred HHHHhhhhhHHHhhcCCcCcCcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCC--ccc-
Confidence 9999999999998866653 34579998753211 1 1235677889999999999998651 110
Q ss_pred CCCCcccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcC
Q 031425 66 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 145 (160)
Q Consensus 66 ~~~~~f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~ 145 (160)
...++.||||+ |||+||++|+++++++|++|||||||||+|++|+++|+++||++|++||.+|++|
T Consensus 180 -------------~~~d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hlad 245 (262)
T PLN00025 180 -------------EGLDPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 245 (262)
T ss_pred -------------ccccCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcC
Confidence 12356799999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhhhcc
Q 031425 146 PWHKTIIQTLA 156 (160)
Q Consensus 146 P~~~~~~~~~~ 156 (160)
|+++|++++..
T Consensus 246 P~~~n~~~~~~ 256 (262)
T PLN00025 246 PVANNAWAYAT 256 (262)
T ss_pred ccccchhhhhh
Confidence 99999998753
No 7
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=1.6e-35 Score=244.55 Aligned_cols=133 Identities=36% Similarity=0.705 Sum_probs=108.9
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcch--------hhh-----cccChhHHHHHHHHHHHHHHHHhhccccCCCCCCC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGA--------VEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTK 67 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~--------~~~-----~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~ 67 (160)
|||++|+++||+++.+ .|++++. ..| .+..+++++++|+++||++|.+|+... +
T Consensus 94 MLAv~G~i~~E~l~~~------~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~---~---- 160 (243)
T PLN00099 94 MLAVPGILVPEALGLG------NWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK---D---- 160 (243)
T ss_pred HHHHhhHHHHHHhccC------CcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccC---C----
Confidence 9999999999997752 3554432 122 122357788999999999999876431 0
Q ss_pred CCcccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hccCCCchhhHHhhhcCc
Q 031425 68 EGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA-SVTHVGPIDNILEHLSDP 146 (160)
Q Consensus 68 ~~~f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~-~~~g~gp~~~l~~~~~~P 146 (160)
..+..|||| +|||+||.+|+++++++|++|||||||||+|++|+++|+ .+||++|++||.+|++||
T Consensus 161 ------------~~~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp 227 (243)
T PLN00099 161 ------------PEKKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADP 227 (243)
T ss_pred ------------CCCCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCC
Confidence 113469999 699999999999999999999999999999999999999 579999999999999999
Q ss_pred cchhHhhhccccC
Q 031425 147 WHKTIIQTLANSG 159 (160)
Q Consensus 147 ~~~~~~~~~~~~~ 159 (160)
+++|+++.+.+.+
T Consensus 228 ~~~N~~~~~~~~~ 240 (243)
T PLN00099 228 WHNNIGDIIIPRS 240 (243)
T ss_pred ccCceeeeecccC
Confidence 9999999887654
No 8
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=2.4e-35 Score=247.88 Aligned_cols=131 Identities=43% Similarity=0.717 Sum_probs=110.7
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhh----c-cc-----ChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEF----K-FA-----STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 70 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~----~-~~-----~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~ 70 (160)
|||++||++||+++ |+ .|+++|.... . +. ++.+++++|+++||++|.+|+.+.
T Consensus 145 MLAvaG~lvpEll~--G~----~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~----------- 207 (286)
T PLN00187 145 MLATLGALSVEALT--GV----TWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAEL----------- 207 (286)
T ss_pred HHHhhchhhHHhcc--CC----cccccccccccccccccccccchhHHHHHHHHHHHHHHHHhhhccCC-----------
Confidence 99999999999974 33 3887765321 0 11 235788999999999999997642
Q ss_pred ccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchh
Q 031425 71 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 150 (160)
Q Consensus 71 f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~ 150 (160)
...+..||||++|||+||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+++|
T Consensus 208 --------~~~~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n 279 (286)
T PLN00187 208 --------DPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTT 279 (286)
T ss_pred --------CCCCCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCccccc
Confidence 012456999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhcc
Q 031425 151 IIQTLA 156 (160)
Q Consensus 151 ~~~~~~ 156 (160)
|++++.
T Consensus 280 ~~~~~~ 285 (286)
T PLN00187 280 IIDTFS 285 (286)
T ss_pred HHHhcc
Confidence 999863
No 9
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=4e-35 Score=249.38 Aligned_cols=147 Identities=38% Similarity=0.633 Sum_probs=118.0
Q ss_pred CcccchhhhhhhhccCCCC--CCchhhhcchhhh-----cc-----------cChhHHHHHHHHHHHHHHHHhhccccCC
Q 031425 1 MAGVAGILFTDLLRVTGIR--ELPVWYEAGAVEF-----KF-----------ASTRTLFIVQLLLMGFAETKRYMDYISP 62 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~--~~~~w~~ag~~~~-----~~-----------~~~~~l~~~q~l~ig~~E~~r~~~~~~p 62 (160)
|||++|+++||+++.+|.. ..|.||++|...+ .+ ..+..++++|+++|+.+|.+|+.++.++
T Consensus 160 MLA~~G~lv~e~l~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~ 239 (324)
T PLN00171 160 MLAALGVVIPEVLDLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEAL 239 (324)
T ss_pred HHHHhhHHHHHHhccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeecccccc
Confidence 9999999999998877654 2367999875321 01 1124567889888888999998875332
Q ss_pred CCCCCCCcccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhh
Q 031425 63 GSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEH 142 (160)
Q Consensus 63 g~~~~~~~f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~ 142 (160)
+..+ .. ...|..|||+.+|||+||++|+++++++|++|||||||||+|++|+++|+.+||++|++||.+|
T Consensus 240 ~~~g---------~~-~PGD~gYPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~h 309 (324)
T PLN00171 240 EPLG---------IY-LPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDH 309 (324)
T ss_pred CCcc---------cc-CCCcccCCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 2110 00 1235579999889999999999999999999999999999999999999999999999999999
Q ss_pred hcCccchhHhhhccc
Q 031425 143 LSDPWHKTIIQTLAN 157 (160)
Q Consensus 143 ~~~P~~~~~~~~~~~ 157 (160)
++||+++||++++.+
T Consensus 310 ladP~~~Ni~~~~~~ 324 (324)
T PLN00171 310 LSDPLHNNLLSSLKL 324 (324)
T ss_pred hcCccccchHHHhcC
Confidence 999999999999753
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.2e-34 Score=239.11 Aligned_cols=125 Identities=38% Similarity=0.662 Sum_probs=107.3
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++. |.|++++...+. .+.++++++|+++||++|.+|+.++..++
T Consensus 85 Mla~~G~~~~E~~~~------P~w~~ag~~~~~-~~~~~l~~iqill~g~~E~~r~~~~~~~g----------------- 140 (246)
T PLN00100 85 MAATAGILFTDAVGL------PKFWEAGAEKYG-LDLQTLVLIQVVVMAVLEAARYRGFMKTG----------------- 140 (246)
T ss_pred HHHHhhhhHHHHhcc------cchhhcchhhhc-cchhHHHHHHHHHHHHHhhhccccccccc-----------------
Confidence 999999999999874 458888776553 34577889999999999999987653222
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhHhhhc
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTL 155 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~~~~~ 155 (160)
+.++|||++|||+||++ +++|+||||||||||+|++|+++|+.+||++|++||.+|++||+++||+++.
T Consensus 141 -~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~ 209 (246)
T PLN00100 141 -ESGVLSFFPFDPTGMDS-----PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSS 209 (246)
T ss_pred -ccCCCCCCCCCcccccH-----HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCC
Confidence 23469999999999963 5789999999999999999999999999999999999999999999999874
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.96 E-value=3.1e-30 Score=214.07 Aligned_cols=133 Identities=41% Similarity=0.590 Sum_probs=105.4
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhccc--ChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcc----cch
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFA--STRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF----FGL 74 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~--~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f----~g~ 74 (160)
|||++||++||+++ | ..||++|...+.+. ++.+++++|+++||++|.+||+++.+|+++..++.+ ...
T Consensus 107 MLa~~G~~v~e~l~--g----~~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~ 180 (255)
T PLN00170 107 MAAVVGIFVGQAWS--G----IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAE 180 (255)
T ss_pred HHHHHhhhhHHHcc--C----CChhhCCccccccCccchHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccc
Confidence 99999999999975 2 23999886532222 346788999999999999999999899886654321 001
Q ss_pred hhhccCCCCCCCCCCCCccCCCcc---------cHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHH
Q 031425 75 EAALEGLEPGYPGGPLLNPLGLAK---------DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL 140 (160)
Q Consensus 75 ~~~~~~~~~~~PGd~~fdplgl~~---------~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~ 140 (160)
+......+..|||+..|||+||++ |+++++++|++|||||||||+|++|+++|+ .||++|+++|.
T Consensus 181 ~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 181 NFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 111122356799997899999985 789999999999999999999999999999 69999999874
No 12
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.93 E-value=5.2e-26 Score=184.62 Aligned_cols=114 Identities=30% Similarity=0.365 Sum_probs=83.9
Q ss_pred CcccchhhhhhhhccCCCC----CCchhhhcchhhhcccChhHH-HHHHH-HHHHHHHHHhhccccCCCCCCCCCcccch
Q 031425 1 MAGVAGILFTDLLRVTGIR----ELPVWYEAGAVEFKFASTRTL-FIVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGL 74 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~----~~~~w~~ag~~~~~~~~~~~l-~~~q~-l~ig~~E~~r~~~~~~pg~~~~~~~f~g~ 74 (160)
|||++|+++||.+++||.+ +.|+|+++. ..++.. +++|+ ++||++|...... ....
T Consensus 87 MlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~------~~~~~~g~~~Qi~~~ig~~E~~~~~~----~~~~-------- 148 (209)
T PLN00089 87 MLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAH------DALLKSGAMIQIFAWIGFVDLAVSAP----AAAA-------- 148 (209)
T ss_pred HHHHHHHHHHHHHcCCCccccccccccHHHHH------HhhcccccHHHHHHHHHHHHHHHhhc----cccc--------
Confidence 9999999999999999864 112333321 112222 25686 4899999653221 1100
Q ss_pred hhhccCCCCCCCCCCCCccCCCc-ccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCch
Q 031425 75 EAALEGLEPGYPGGPLLNPLGLA-KDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136 (160)
Q Consensus 75 ~~~~~~~~~~~PGd~~fdplgl~-~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~ 136 (160)
...+.+||||++|||+||. +|+++++++|++|||||||||+|++|+++|+.+||++.+
T Consensus 149 ----~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~ 207 (209)
T PLN00089 149 ----AAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGFP 207 (209)
T ss_pred ----cccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCC
Confidence 0012468999999999995 589999999999999999999999999999999998864
No 13
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.90 E-value=5.2e-24 Score=172.14 Aligned_cols=116 Identities=22% Similarity=0.295 Sum_probs=83.4
Q ss_pred Ccccchhhhhhh-hccCCCCCC-chhhhcchhhh-cccChhHHHHHHH-HHHHHHHHHhhccccCCCCCCCCCcccchhh
Q 031425 1 MAGVAGILFTDL-LRVTGIREL-PVWYEAGAVEF-KFASTRTLFIVQL-LLMGFAETKRYMDYISPGSQTKEGSFFGLEA 76 (160)
Q Consensus 1 MLA~~G~lv~E~-~~~pG~~~~-~~w~~ag~~~~-~~~~~~~l~~~q~-l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~ 76 (160)
|||++|+++||+ +++||..+. ...|++-...+ .+..++..+++|+ ++||++|..++.+..
T Consensus 76 MlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ig~~E~~~~~~~~---------------- 139 (202)
T PLN00120 76 MLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAFIGFLELAVMKDIT---------------- 139 (202)
T ss_pred HHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHHHHHHHHHhhcccc----------------
Confidence 999999999997 888886532 22343211111 1334566778896 599999987654320
Q ss_pred hccCCCCCCCCCCCCc--cCCCcc-cHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCch
Q 031425 77 ALEGLEPGYPGGPLLN--PLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136 (160)
Q Consensus 77 ~~~~~~~~~PGd~~fd--plgl~~-~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~ 136 (160)
.++++|||+.++ ++||.+ |+++++++|++|||||||||+|++|+++|+.++|+.|+
T Consensus 140 ----~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 140 ----GEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELPI 198 (202)
T ss_pred ----cCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence 123568865333 455554 78999999999999999999999999999999998775
No 14
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.88 E-value=1.1e-22 Score=157.08 Aligned_cols=111 Identities=36% Similarity=0.541 Sum_probs=82.8
Q ss_pred Ccccchhhhhhhhc-cCCCC---CCchhhhcchhhhcccChhHHHHHH-HHHHHHHHHHhhccccCCCCCCCCCcccchh
Q 031425 1 MAGVAGILFTDLLR-VTGIR---ELPVWYEAGAVEFKFASTRTLFIVQ-LLLMGFAETKRYMDYISPGSQTKEGSFFGLE 75 (160)
Q Consensus 1 MLA~~G~lv~E~~~-~pG~~---~~~~w~~ag~~~~~~~~~~~l~~~q-~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~ 75 (160)
|||++|++++|+++ +++.. +.+.|++++. + +.+..+++| +++||++|.+|..+...+...
T Consensus 41 MLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~~ig~~e~~~~~~~~~~~~~---------- 105 (156)
T PF00504_consen 41 MLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG----I-PVPAAGWAQILLFIGALEPWRQQGVPEPGEG---------- 105 (156)
T ss_dssp HHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS----S-SSHSHHHHHHHHHHHHHHHHHHHHTTTCCTT----------
T ss_pred hhhhHHHHHHHHhccCCcccccccccchhhhhh----h-hhhhHHHHHHHHHHhHhhhhhcccccCCccc----------
Confidence 89999999999974 44432 2245665431 1 144455555 569999999988764322210
Q ss_pred hhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 031425 76 AALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 129 (160)
Q Consensus 76 ~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~ 129 (160)
...+..||||++|||+|+.+|+++++++|.+|||||||||+|++|+++|+.
T Consensus 106 ---~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 106 ---GGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp ---SSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ---ccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 123457999999999999888999999999999999999999999999973
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.73 E-value=3.9e-18 Score=142.83 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhH-------HhhhcCccchhHh
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNI-------LEHLSDPWHKTII 152 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l-------~~~~~~P~~~~~~ 152 (160)
.|+.+|||+||||+||++|+++++++|++||||||+||+|++|+++|+++++.+++++. .+++.+|....++
T Consensus 75 LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~ 153 (267)
T PLN00098 75 LDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVV 153 (267)
T ss_pred CCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHH
Confidence 46779999999999999999999999999999999999999999999999887765532 2345666544333
No 16
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.70 E-value=1.9e-17 Score=137.77 Aligned_cols=74 Identities=28% Similarity=0.486 Sum_probs=60.7
Q ss_pred HHHhhccccCCCCCCCCCcccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcc
Q 031425 52 ETKRYMDYISPGSQTKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131 (160)
Q Consensus 52 E~~r~~~~~~pg~~~~~~~f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~ 131 (160)
.-.+|.+..+|++....|.+ .++++|||++|||++|.+|+++++++|++||+||||||+|++||++|++++
T Consensus 50 ~~k~w~p~~~~~~~~~~P~~---------l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~ 120 (255)
T PLN00170 50 PKKSWIPAVKGGGNLVDPEW---------LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120 (255)
T ss_pred CCccccCCCCCCcccCCccc---------ccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHcc
Confidence 34466666566554433433 356789999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 031425 132 HVG 134 (160)
Q Consensus 132 g~g 134 (160)
|..
T Consensus 121 g~~ 123 (255)
T PLN00170 121 GIP 123 (255)
T ss_pred CCC
Confidence 764
No 17
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.70 E-value=1.6e-17 Score=137.96 Aligned_cols=56 Identities=36% Similarity=0.599 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCch
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~ 136 (160)
.++.+|||++|||+||++|+++++++|++||+||||||+|++|+++|+++++.+++
T Consensus 66 LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 66 LNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred cCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 46779999999999999999999999999999999999999999999999988765
No 18
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.66 E-value=7.1e-17 Score=134.33 Aligned_cols=54 Identities=26% Similarity=0.428 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCC
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~g 134 (160)
.|+.+|||++|||+||++|+++++++|++||||||+||+|++|+++|++++..+
T Consensus 58 Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g 111 (252)
T PLN00147 58 LDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTG 111 (252)
T ss_pred CCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCC
Confidence 467899999999999999999999999999999999999999999999987654
No 19
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.64 E-value=1.5e-16 Score=131.83 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCc
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp 135 (160)
.++..|||++|||+||++|+++++++|++||+|||+||+|++|+++|+++++.+.
T Consensus 57 LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 57 LDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred cCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 4567899999999999999999999999999999999999999999999987653
No 20
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.64 E-value=1.4e-16 Score=133.13 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCC
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~g 134 (160)
.++.+|||+||||+||++|+++++++|++||+|||+||+|++|+++|+++++.+
T Consensus 66 Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 66 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred ccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 456789999999999999999999999999999999999999999999987543
No 21
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.64 E-value=1.4e-16 Score=136.18 Aligned_cols=54 Identities=30% Similarity=0.369 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCC
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~g 134 (160)
.|+.+|||+||||+||++|+++++++|++||||||+||+|++|+++|+++++.+
T Consensus 123 LdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g 176 (324)
T PLN00171 123 LTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFG 176 (324)
T ss_pred cCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCC
Confidence 467789999999999999999999999999999999999999999999987554
No 22
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.61 E-value=3.7e-16 Score=131.92 Aligned_cols=52 Identities=29% Similarity=0.443 Sum_probs=48.0
Q ss_pred CCCCCCCCCCccCCCcccHHH-------------------------------------------HHHHHHHHHhhhhHHH
Q 031425 82 EPGYPGGPLLNPLGLAKDIRN-------------------------------------------AREWKLKEIKNGRLAM 118 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~-------------------------------------------~~~~~~~ElknGRlAM 118 (160)
++.+|||+||||+||++|||. ++++|++||+|||+||
T Consensus 66 dGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRwAM 145 (286)
T PLN00187 66 DGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAM 145 (286)
T ss_pred cCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHHHH
Confidence 667999999999999998886 5999999999999999
Q ss_pred HHHHHHHhhhhccCC
Q 031425 119 VAMLGIFVQASVTHV 133 (160)
Q Consensus 119 la~~G~~~q~~~~g~ 133 (160)
+|++||+++++++|.
T Consensus 146 LAvaG~lvpEll~G~ 160 (286)
T PLN00187 146 LATLGALSVEALTGV 160 (286)
T ss_pred HHhhchhhHHhccCC
Confidence 999999999998764
No 23
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.61 E-value=4.9e-16 Score=128.75 Aligned_cols=51 Identities=29% Similarity=0.381 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcc
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~ 131 (160)
.|+.+|||+||||+||++|+++++++|++||||||+||+|++|+++|++++
T Consensus 48 Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 48 LDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred CCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 466799999999999999999999999999999999999999999999975
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.60 E-value=6.7e-16 Score=127.95 Aligned_cols=52 Identities=31% Similarity=0.425 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccC
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g 132 (160)
.++.+|||+||||++|++++++++++|++||||||+||+|++|+++|+.++.
T Consensus 57 Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 57 LDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 3567899999999999999999999999999999999999999999999653
No 25
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.55 E-value=3.7e-15 Score=124.75 Aligned_cols=56 Identities=29% Similarity=0.446 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCccCCCcccHH------HHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchh
Q 031425 81 LEPGYPGGPLLNPLGLAKDIR------NAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPID 137 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~------~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~ 137 (160)
.++..|||+||||+||++ ++ +.+++|++||+||||||+|++|+++|+++++.+.+.
T Consensus 55 LdG~lPGD~GFDPlGL~~-p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 55 LDGTLPGDFGFDPLGLSD-PEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred cCCCCCCccCCCccccCC-ccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 356789999999999974 32 457789999999999999999999999998766553
No 26
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.52 E-value=1.6e-14 Score=117.57 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=44.4
Q ss_pred CCCCCCccCCCcc-cHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCC
Q 031425 86 PGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134 (160)
Q Consensus 86 PGd~~fdplgl~~-~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~g 134 (160)
.||++|||+||++ ++++++++|++||||||+||+|++|+++|+.++..+
T Consensus 54 ~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG 103 (209)
T PLN00089 54 TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPG 103 (209)
T ss_pred CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999986 677899999999999999999999999999976543
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.51 E-value=1.8e-14 Score=111.25 Aligned_cols=51 Identities=35% Similarity=0.567 Sum_probs=47.1
Q ss_pred CCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCC
Q 031425 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHV 133 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~ 133 (160)
++.++||++|||++|++++ +++++|..||||||+||+|++|++++++.++.
T Consensus 6 ~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~ 56 (156)
T PF00504_consen 6 DGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGF 56 (156)
T ss_dssp TSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTT
T ss_pred cCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccC
Confidence 4568999999999999877 89999999999999999999999999998874
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.25 E-value=3e-12 Score=103.71 Aligned_cols=43 Identities=37% Similarity=0.672 Sum_probs=39.6
Q ss_pred CCCCCCccCCCcc--cHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Q 031425 86 PGGPLLNPLGLAK--DIRNAREWKLKEIKNGRLAMVAMLGIFVQAS 129 (160)
Q Consensus 86 PGd~~fdplgl~~--~~~~~~~~~~~ElknGRlAMla~~G~~~q~~ 129 (160)
|.++ |||+||++ |+++++++|++||||||+||+|++|+++|+.
T Consensus 43 p~g~-fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 43 PLGF-FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred CCCC-CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecc
Confidence 6665 99999974 7899999999999999999999999999996
No 29
>PHA02337 putative high light inducible protein
Probab=98.01 E-value=5.3e-06 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.223 Sum_probs=25.4
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhccCCC
Q 031425 108 LKEIKNGRLAMVAMLGIFVQASVTHVG 134 (160)
Q Consensus 108 ~~ElknGRlAMla~~G~~~q~~~~g~g 134 (160)
.+|.-|||+||+|+...+..++.||++
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 579999999999999999999999986
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.69 E-value=2.7e-05 Score=62.03 Aligned_cols=45 Identities=33% Similarity=0.443 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhcc-CCCchhhHHhhhcCc
Q 031425 102 NAREWKLKEIKNGRLAMVAMLGIFVQASVT-HVGPIDNILEHLSDP 146 (160)
Q Consensus 102 ~~~~~~~~ElknGRlAMla~~G~~~q~~~~-g~gp~~~l~~~~~~P 146 (160)
..++.+..|+-|||+||+|++--++.+.+| |+|+++|+..--.-|
T Consensus 131 ~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvP 176 (214)
T PLN00084 131 QVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVP 176 (214)
T ss_pred HHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCc
Confidence 356778899999999999999999999999 999999987544444
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.43 E-value=0.0001 Score=61.05 Aligned_cols=38 Identities=32% Similarity=0.447 Sum_probs=34.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhh
Q 031425 106 WKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHL 143 (160)
Q Consensus 106 ~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~ 143 (160)
+..+|+-|||+||+|++..++.+.+||++.+.++...+
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~f~ 196 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGNFF 196 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhhhh
Confidence 45699999999999999999999999999998887644
No 32
>PLN02449 ferrochelatase
Probab=40.60 E-value=19 Score=33.19 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhhhhccCCCch
Q 031425 116 LAMVAMLGIFVQASVTHVGPI 136 (160)
Q Consensus 116 lAMla~~G~~~q~~~~g~gp~ 136 (160)
+||+|++.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999986
No 33
>PHA00649 hypothetical protein
Probab=29.02 E-value=83 Score=21.78 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=18.2
Q ss_pred cHHHHHHHHHHHHhhhh-------HHHHHHHHHHhhhh
Q 031425 99 DIRNAREWKLKEIKNGR-------LAMVAMLGIFVQAS 129 (160)
Q Consensus 99 ~~~~~~~~~~~ElknGR-------lAMla~~G~~~q~~ 129 (160)
+|++.++.| ..+.||| -.|++..|+++..+
T Consensus 32 ~P~~VEEFr-~D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 32 VPEQVEEFR-EDLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CHHHHHHHH-HHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 566666655 4566665 24677777776554
No 34
>PHA00003 B internal scaffolding protein
Probab=26.05 E-value=1.1e+02 Score=22.94 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHH
Q 031425 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLG 123 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G 123 (160)
++.+|-++.+||.- ..-+.++.+-.||.+||-+--==.|
T Consensus 41 ~~t~p~gLRrdpvq---~d~EaERqkr~~iEagk~~c~RrFG 79 (120)
T PHA00003 41 NGTDPSGLRRDPVQ---QDLEAERQKRADIEAGKAICARRFG 79 (120)
T ss_pred CCCCccccccCccc---chHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45578888888843 2234567778999999986533333
No 35
>COG3924 Predicted membrane protein [Function unknown]
Probab=20.82 E-value=54 Score=22.80 Aligned_cols=24 Identities=33% Similarity=0.789 Sum_probs=17.2
Q ss_pred cchhhhhhhhc--cCCCCCCchhhhc
Q 031425 4 VAGILFTDLLR--VTGIRELPVWYEA 27 (160)
Q Consensus 4 ~~G~lv~E~~~--~pG~~~~~~w~~a 27 (160)
.+||++...+. .||..+.|.||+.
T Consensus 23 l~gW~v~AYlp~~t~G~~gfP~WFE~ 48 (80)
T COG3924 23 LAGWLVAAYLPGNTPGFTGFPLWFEM 48 (80)
T ss_pred HHHHHHHHhCCCCCCCCCCChHHHHH
Confidence 46888887643 2677778999984
Done!