Query 031425
Match_columns 160
No_of_seqs 142 out of 1048
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 4.2E-39 1.4E-43 268.2 1.3 153 1-157 114-268 (269)
2 2wsc_3 LHCA3, type II chloroph 100.0 2.5E-37 8.6E-42 258.3 3.9 155 1-157 111-275 (276)
3 3pl9_A Chlorophyll A-B binding 100.0 1.8E-36 6E-41 248.8 8.6 129 1-155 104-242 (243)
4 2wsc_4 Chlorophyll A-B binding 100.0 2.7E-38 9.1E-43 261.3 -3.1 147 1-156 103-249 (251)
5 2bhw_A Chlorophyll A-B binding 100.0 4.8E-35 1.6E-39 239.5 11.6 142 1-159 73-229 (232)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 2.9E-33 9.8E-38 230.0 2.0 138 1-158 95-240 (241)
7 2bhw_A Chlorophyll A-B binding 99.7 7.3E-17 2.5E-21 131.8 5.8 52 81-132 36-87 (232)
8 2wsc_4 Chlorophyll A-B binding 99.6 9.3E-17 3.2E-21 132.5 -0.3 55 82-136 67-121 (251)
9 3pl9_A Chlorophyll A-B binding 99.6 2.7E-16 9.2E-21 129.0 2.2 51 82-132 25-118 (243)
10 2wsc_2 LHCA2, type II chloroph 99.6 1.1E-16 3.9E-21 133.1 -0.9 54 82-135 78-131 (269)
11 2wsc_1 AT3G54890, LHCA1; photo 99.5 1.2E-15 4E-20 125.3 1.2 50 82-131 59-108 (241)
12 2wsc_3 LHCA3, type II chloroph 99.4 6E-15 2E-19 123.2 -2.9 53 81-134 69-127 (276)
13 2bf9_A Pancreatic hormone; tur 21.5 1.2E+02 0.004 17.4 3.3 18 82-107 4-21 (36)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=4.2e-39 Score=268.15 Aligned_cols=153 Identities=44% Similarity=0.812 Sum_probs=131.3
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++..|..+.|.|++++...+ +.+.++++++|+++||++|++|++++.+||+++.++.|.+. ....
T Consensus 114 MLA~~G~l~~E~l~~~G~~~~p~w~~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~--~~~~ 190 (269)
T 2wsc_2 114 MLGAAGIFIPEFLTKLGILNTPSWYTAGEQEY-FTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNN--KLTG 190 (269)
T ss_dssp TTTTHHHHHHHHHCCTTSSSCCCCCSTTSSSS-CCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSC--CSST
T ss_pred HHHHHHhHhHHhhccCCcccCccccccchhhh-hcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccc--cccc
Confidence 99999999999998888876688999876544 55567788999999999999999998888887666555321 1123
Q ss_pred CCCCCCCCCCCccCCCcc-cHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHH-hhhcCccchhHhhhccc
Q 031425 81 LEPGYPGGPLLNPLGLAK-DIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNIL-EHLSDPWHKTIIQTLAN 157 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~-~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~-~~~~~P~~~~~~~~~~~ 157 (160)
.+..||||++|||+||.+ |+++++++|.+|||||||||+|++|+++|+.+||++|++||. +|++|| ++||++++..
T Consensus 191 ~d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 191 TDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp TSCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred cccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 456799999999999985 788899999999999999999999999999999999999999 999999 9999998764
No 2
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=2.5e-37 Score=258.27 Aligned_cols=155 Identities=46% Similarity=0.846 Sum_probs=103.8
Q ss_pred CcccchhhhhhhhccCCCC--CCch-hhhcch------hhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcc
Q 031425 1 MAGVAGILFTDLLRVTGIR--ELPV-WYEAGA------VEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSF 71 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~--~~~~-w~~ag~------~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f 71 (160)
|||++|++++|+++..|+. +.+. |++.+. ..| +.+..+++++|+++||++|.+|++++.+||+.+.++.|
T Consensus 111 MLa~~G~l~~E~~~~~g~~~~~~p~~w~~~g~ip~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~ 189 (276)
T 2wsc_3 111 MLGAVGAIAPEILGKAGLIPQETALPWFRTGFIPPAGTYNY-WADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL 189 (276)
T ss_dssp CCTTTSTTSCSSCSSCCCCCCSSCCSSSSCCCC-----CCC-SCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSS
T ss_pred hhhHHHHHHHHHhcccccccccCcchhhhhhcccchhHHHH-hccchHHHHHHHHHHHHHHHhhhcccccCCcccccccc
Confidence 9999999999998877765 3343 887432 122 34456778899999999999999988888876544332
Q ss_pred cchhh-hccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchh
Q 031425 72 FGLEA-ALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 150 (160)
Q Consensus 72 ~g~~~-~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~ 150 (160)
|... .....+..||||++|||+||.+|+++++++|.+|||||||||+|++|+++|+.+||++|++||.+|++||+++|
T Consensus 190 -g~~~~~~~~~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n 268 (276)
T 2wsc_3 190 -GLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNN 268 (276)
T ss_dssp -CSCCCCCCCSSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC------------
T ss_pred -cccccccccccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccch
Confidence 2111 11223567999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred Hhhhccc
Q 031425 151 IIQTLAN 157 (160)
Q Consensus 151 ~~~~~~~ 157 (160)
|++++..
T Consensus 269 ~~~~~~~ 275 (276)
T 2wsc_3 269 ILTSLKF 275 (276)
T ss_dssp -------
T ss_pred hhhhccC
Confidence 9998764
No 3
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=1.8e-36 Score=248.77 Aligned_cols=129 Identities=42% Similarity=0.649 Sum_probs=110.4
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhc----------ccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCc
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFK----------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGS 70 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~----------~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~ 70 (160)
|||++||++||+++ | ..|+++|..... ..++++++++|+++||++|.+|+++..
T Consensus 104 MLAvlG~lvpE~l~--g----~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R~~~~~---------- 167 (243)
T 3pl9_A 104 MLATLGALTVEGLT--G----ITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELD---------- 167 (243)
T ss_dssp HHHHHHHHHHHHHH--S----CCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHHHSCCC----------
T ss_pred HHHHHHHHhHHhhc--C----cccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHhhcccC----------
Confidence 99999999999976 2 238877653210 123567889999999999999987631
Q ss_pred ccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchh
Q 031425 71 FFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKT 150 (160)
Q Consensus 71 f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~ 150 (160)
..+..||||+ |||+||++|+++++++|.+|||||||||+|++|+++|+++||+||++||.+|++||+++|
T Consensus 168 ---------~~~~~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~HladP~~~n 237 (243)
T 3pl9_A 168 ---------TEKRLYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTT 237 (243)
T ss_dssp ---------TTTTTCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHCSGGGS
T ss_pred ---------CccccCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcchhh
Confidence 1234599999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhc
Q 031425 151 IIQTL 155 (160)
Q Consensus 151 ~~~~~ 155 (160)
|++|+
T Consensus 238 i~~~~ 242 (243)
T 3pl9_A 238 ILDRF 242 (243)
T ss_dssp TTTTT
T ss_pred hhhhc
Confidence 99986
No 4
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=2.7e-38 Score=261.30 Aligned_cols=147 Identities=48% Similarity=0.867 Sum_probs=121.4
Q ss_pred CcccchhhhhhhhccCCCCCCchhhhcchhhhcccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccchhhhccC
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYEAGAVEFKFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFGLEAALEG 80 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~ag~~~~~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g~~~~~~~ 80 (160)
|||++|+++||+++..|+.+.|.|++++...| +.++++++++|+++||++|.+|++++.+||+.+.++.|.+. ..+.
T Consensus 103 Mla~~G~~~~e~~~~~g~~~~p~w~~aG~~~~-~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~--~~~~ 179 (251)
T 2wsc_4 103 MLGVAGMLLPEVFTSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQY--SLPA 179 (251)
T ss_dssp HHHHTTSSTTSSSCCSCSSCCCCCSCCCSSSC-SSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSS--SSCC
T ss_pred HHHHHHHHHHHHhcCCCccCCccccccchHhh-hccchHHHHHHHHHHHHHHHHHhhcccCCCccccccccccc--cccc
Confidence 89999999999998888876678999876544 55566778889999999999999988888887655555221 1112
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcCccchhHhhhcc
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSDPWHKTIIQTLA 156 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~P~~~~~~~~~~ 156 (160)
.+..||||+ |||+++.+ ++++|++||||||| |+|++|+++|+.+||++|++||.+|++||+++|+++++.
T Consensus 180 ~d~~yPGg~-FDPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~ 249 (251)
T 2wsc_4 180 GEVGYPGGI-FNPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLG 249 (251)
T ss_dssp HHHHSSCCT-TCCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC---
T ss_pred ccccCCCCc-cCccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhc
Confidence 234699998 99999975 56789999999999 999999999999999999999999999999999999864
No 5
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=4.8e-35 Score=239.52 Aligned_cols=142 Identities=42% Similarity=0.699 Sum_probs=117.8
Q ss_pred CcccchhhhhhhhccCCCC-CCchhhhcchhhhc--------------ccChhHHHHHHHHHHHHHHHHhhccccCCCCC
Q 031425 1 MAGVAGILFTDLLRVTGIR-ELPVWYEAGAVEFK--------------FASTRTLFIVQLLLMGFAETKRYMDYISPGSQ 65 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~-~~~~w~~ag~~~~~--------------~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~ 65 (160)
|||++|+++||+++.+|+. ..+.|+++|...+. .+.+..++++|+++||++|.+|+.+- +.
T Consensus 73 MLA~~G~lv~E~l~~~G~~~~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g--~~-- 148 (232)
T 2bhw_A 73 MLGALGSVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGG--PL-- 148 (232)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEE--TT--
T ss_pred HHhhhhhhhHHHhccCCcCCcccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccC--cc--
Confidence 9999999999998887753 34579887753221 11245677889999999999998651 11
Q ss_pred CCCCcccchhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCchhhHHhhhcC
Q 031425 66 TKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNILEHLSD 145 (160)
Q Consensus 66 ~~~~~f~g~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~~~l~~~~~~ 145 (160)
+ ...++.||||+ |||+||.+|+++++++|.+|||||||||+|++|+++|+.+||++|++|+.+|++|
T Consensus 149 -------g-----~~~d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~ad 215 (232)
T 2bhw_A 149 -------G-----EVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 215 (232)
T ss_dssp -------E-----ECSSSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHC
T ss_pred -------c-----ccccccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcC
Confidence 0 12345699998 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHhhhccccC
Q 031425 146 PWHKTIIQTLANSG 159 (160)
Q Consensus 146 P~~~~~~~~~~~~~ 159 (160)
|+++|++++...+.
T Consensus 216 P~~~n~~~~~~~~~ 229 (232)
T 2bhw_A 216 PVNNNAWSYATNFV 229 (232)
T ss_dssp TTTSSGGGGTTTTC
T ss_pred hHHhHHHHHHHhhc
Confidence 99999999977653
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.97 E-value=2.9e-33 Score=229.98 Aligned_cols=138 Identities=35% Similarity=0.664 Sum_probs=99.2
Q ss_pred CcccchhhhhhhhccCCCCCCchhhh--cchhhh-----cccChhHHHHHHHHHHHHHHHHhhccccCCCCCCCCCcccc
Q 031425 1 MAGVAGILFTDLLRVTGIRELPVWYE--AGAVEF-----KFASTRTLFIVQLLLMGFAETKRYMDYISPGSQTKEGSFFG 73 (160)
Q Consensus 1 MLA~~G~lv~E~~~~pG~~~~~~w~~--ag~~~~-----~~~~~~~l~~~q~l~ig~~E~~r~~~~~~pg~~~~~~~f~g 73 (160)
|||++|+++||+++.++..+.+.|.. .+...| .+..+++++++|+++||++|.+|+.+. +
T Consensus 95 Mla~~G~~~~e~~~~~~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~--------~----- 161 (241)
T 2wsc_1 95 MLAVPGILVPEALGYGNWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK--------D----- 161 (241)
T ss_dssp TTTSTTSSSTTCCCCC-----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC--------S-----
T ss_pred HhhhhcccchhhccCCccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc--------C-----
Confidence 99999999999987543221111211 111112 133456788899999999999987531 0
Q ss_pred hhhhccCCCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hccCCCchhhHHhhhcCccchhHh
Q 031425 74 LEAALEGLEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQA-SVTHVGPIDNILEHLSDPWHKTII 152 (160)
Q Consensus 74 ~~~~~~~~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~-~~~g~gp~~~l~~~~~~P~~~~~~ 152 (160)
..++.||||. |||+|+.+|+++++++|.+|||||||||+|++|+++|+ .+||++|++||.+|++||+++||+
T Consensus 162 ------~~~~~yPgg~-fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~ 234 (241)
T 2wsc_1 162 ------PEKKKYPGGA-FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234 (241)
T ss_dssp ------SCCSSSCSCC-SCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC----
T ss_pred ------CCCCCCCCCc-ccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCcccccee
Confidence 1234699995 99999999999999999999999999999999999999 589999999999999999999999
Q ss_pred hhcccc
Q 031425 153 QTLANS 158 (160)
Q Consensus 153 ~~~~~~ 158 (160)
+++.+.
T Consensus 235 ~~~~~~ 240 (241)
T 2wsc_1 235 DIVIPF 240 (241)
T ss_dssp ------
T ss_pred eeeccC
Confidence 998764
No 7
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.65 E-value=7.3e-17 Score=131.81 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccC
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTH 132 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g 132 (160)
.++.+|||++|||+||++|+++++++|++||||||+||+|++|+++|++++.
T Consensus 36 LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 36 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 3567899999999999999999999999999999999999999999998753
No 8
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.59 E-value=9.3e-17 Score=132.54 Aligned_cols=55 Identities=36% Similarity=0.587 Sum_probs=38.9
Q ss_pred CCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCch
Q 031425 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGPI 136 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp~ 136 (160)
++.+|||++|||+||++|+++++++|.+||||||+||+|++|+++|+++++.+.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 4568999999999999999999999999999999999999999999999987755
No 9
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.58 E-value=2.7e-16 Score=129.02 Aligned_cols=51 Identities=27% Similarity=0.432 Sum_probs=28.4
Q ss_pred CCCCCCCCCCccCCCcccHHH-------------------------------------------HHHHHHHHHhhhhHHH
Q 031425 82 EPGYPGGPLLNPLGLAKDIRN-------------------------------------------AREWKLKEIKNGRLAM 118 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~-------------------------------------------~~~~~~~ElknGRlAM 118 (160)
|+.+|||+||||+||++|||. ++++|++||||||+||
T Consensus 25 dGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ReaELkHGRwAM 104 (243)
T 3pl9_A 25 DGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAM 104 (243)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred cCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccccccccchhhhHHHHHhhhhcchhHH
Confidence 567899999999999998873 7899999999999999
Q ss_pred HHHHHHHhhhhccC
Q 031425 119 VAMLGIFVQASVTH 132 (160)
Q Consensus 119 la~~G~~~q~~~~g 132 (160)
+|++|++++++++|
T Consensus 105 LAvlG~lvpE~l~g 118 (243)
T 3pl9_A 105 LATLGALTVEGLTG 118 (243)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHhHHhhcC
Confidence 99999999999875
No 10
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.57 E-value=1.1e-16 Score=133.13 Aligned_cols=54 Identities=31% Similarity=0.468 Sum_probs=35.5
Q ss_pred CCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhccCCCc
Q 031425 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVTHVGP 135 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~g~gp 135 (160)
++++|||++|||+||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~ 131 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGI 131 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCc
Confidence 467899999999999999999999999999999999999999999999886554
No 11
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.53 E-value=1.2e-15 Score=125.28 Aligned_cols=50 Identities=32% Similarity=0.472 Sum_probs=46.1
Q ss_pred CCCCCCCCCCccCCCcccHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcc
Q 031425 82 EPGYPGGPLLNPLGLAKDIRNAREWKLKEIKNGRLAMVAMLGIFVQASVT 131 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~~~~~~~~ElknGRlAMla~~G~~~q~~~~ 131 (160)
++.+|||++|||+||++|+++++++|++||||||+||+|++|+++|+.++
T Consensus 59 ~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 59 DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp --CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred cCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 45689999999999999999999999999999999999999999999865
No 12
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.41 E-value=6e-15 Score=123.15 Aligned_cols=53 Identities=32% Similarity=0.517 Sum_probs=34.4
Q ss_pred CCCCCCCCCCCccCCCcccHHHH------HHHHHHHHhhhhHHHHHHHHHHhhhhccCCC
Q 031425 81 LEPGYPGGPLLNPLGLAKDIRNA------REWKLKEIKNGRLAMVAMLGIFVQASVTHVG 134 (160)
Q Consensus 81 ~~~~~PGd~~fdplgl~~~~~~~------~~~~~~ElknGRlAMla~~G~~~q~~~~g~g 134 (160)
.++.+|||++|||+|| +|++++ +++|++||||||+||+|++|+++++++++.+
T Consensus 69 L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g 127 (276)
T 2wsc_3 69 LDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127 (276)
T ss_dssp -----------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCC
T ss_pred ccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccc
Confidence 3567899999999999 678888 9999999999999999999999999998765
No 13
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=21.51 E-value=1.2e+02 Score=17.36 Aligned_cols=18 Identities=22% Similarity=0.602 Sum_probs=12.5
Q ss_pred CCCCCCCCCCccCCCcccHHHHHHHH
Q 031425 82 EPGYPGGPLLNPLGLAKDIRNAREWK 107 (160)
Q Consensus 82 ~~~~PGd~~fdplgl~~~~~~~~~~~ 107 (160)
++.+|||- .++|+++++-
T Consensus 4 kP~~PG~d--------A~~Eela~Y~ 21 (36)
T 2bf9_A 4 QPTYPGDD--------APVEDLIRFY 21 (36)
T ss_dssp CCCCCCTT--------SCHHHHHHHH
T ss_pred CCCCCCCC--------CCHHHHHHHH
Confidence 45689982 3688887764
Done!