RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 031427
         (160 letters)



>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score =  132 bits (333), Expect = 3e-41
 Identities = 56/114 (49%), Positives = 75/114 (65%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             R+LNR + HR +M R M   LV+HE I+TT+ KAKE+RR+ + ++ L K  S+   R 
Sbjct: 6   SGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRL 65

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRE 116
           A A  R ++++ KLF EL  R+  RAGGYTR+L+   R GD APMAYIE VDR 
Sbjct: 66  AFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGFRAGDNAPMAYIELVDRS 119


>d2zjrk1 d.188.1.1 (K:3-115) Prokaryotic ribosomal protein L17
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 113

 Score =  124 bits (312), Expect = 4e-38
 Identities = 43/109 (39%), Positives = 64/109 (58%)

Query: 3   KFRKLNRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARR 62
             RKLNR +  R+++ R   + L++  RI+TT+ KAKE+R   + ++   K G L + R 
Sbjct: 4   AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL 63

Query: 63  AAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIE 111
            A  +   DV+ K+  E+A +Y +R GGYTR+LR   R GD   MA IE
Sbjct: 64  VAQDIHDKDVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIE 112


>d1gd8a_ d.188.1.1 (A:) Prokaryotic ribosomal protein L17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 105

 Score =  114 bits (287), Expect = 2e-34
 Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 1/105 (0%)

Query: 11  TGHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAARRAAAFVRGD 70
           + HR+++ R     L+ H RI TTV KAKE+R   D+++ L K G L A R     ++  
Sbjct: 1   SSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDV 60

Query: 71  DVIHKLFTELAYRYKDRAGGYTRLLR-SRIRVGDAAPMAYIEFVD 114
            ++ KLF E+A RY+DR GGYTR+L+ +  R GD AP+A +E V+
Sbjct: 61  KLVRKLFDEIAPRYRDRQGGYTRVLKLAERRRGDGAPLALVELVE 105


>d2cqma1 d.188.1.1 (A:28-136) Prokaryotic ribosomal protein L17
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score =  111 bits (279), Expect = 3e-33
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 8/115 (6%)

Query: 17  MLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGSLCAA--RRAAAFVRGDDVIH 74
           +LR +++ LV+HERIE   A+  E+R  A+ ++  GK G       R A  ++   D+I 
Sbjct: 1   LLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIP 60

Query: 75  KLFTELAYRYKDRAGGYTRLLRSRIRVGDAAPMAYIEFVDRENELRQSKPAVPQP 129
           KLF  LA RYKD+ GGYTR+L+   R  D A MA IE+           P +P P
Sbjct: 61  KLFQVLAPRYKDQTGGYTRMLQIPNRSLDRAKMAVIEYKGNC------LPPLPLP 109


>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.9 bits (51), Expect = 6.1
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 106 PMAYIEFVDRENELRQSKPAVPQPPPRAALDP 137
           P  Y+E +      +   P     PP  +L  
Sbjct: 55  PCNYVEKMPSSENEKAVSPKKALLPPTVSLSA 86


>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 117

 Score = 23.7 bits (50), Expect = 8.0
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 100 RVGDAAPMAYIEFVDRENELRQSKPAVPQPPPRAALDPWTRSRLTKNFAPPKQ 152
           R+GD +P              ++   VP PP          + +   + PP  
Sbjct: 1   RIGDGSPSHPPILE-------RTLDDVPGPPMGILFPEVRTTSVRLIWQPPAA 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 566,108
Number of extensions: 24574
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 7
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)