Your job contains 1 sequence.
>031429
MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD
KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWAYNRHRQKTNVHIMALN
LVRGVPLTPKEKETMLDLLTPPPPQRPSPSSWWRRWRGQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 031429
(159 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037718 - symbol:CCMH species:3702 "Arabidopsi... 538 7.2e-52 1
TIGR_CMR|SPO_1881 - symbol:SPO_1881 "cytochrome c biogene... 167 1.5e-12 1
TIGR_CMR|ECH_0636 - symbol:ECH_0636 "cytochrome c biogene... 149 1.2e-10 1
TIGR_CMR|APH_0687 - symbol:APH_0687 "cytochrome c biogene... 146 2.5e-10 1
TIGR_CMR|SO_0268 - symbol:SO_0268 "cytochrome c-type biog... 146 2.5e-10 1
UNIPROTKB|Q0C2L1 - symbol:HNE_1314 "Putative cytochrome c... 144 4.1e-10 1
TIGR_CMR|CPS_1037 - symbol:CPS_1037 "cytochrome c-type bi... 144 4.1e-10 1
UNIPROTKB|P0ABM9 - symbol:ccmH "CcmH" species:83333 "Esch... 140 5.2e-09 1
UNIPROTKB|Q48GL7 - symbol:cycL "Cytochrome c-type biogene... 133 5.9e-09 1
UNIPROTKB|Q4KG20 - symbol:cycL "Cytochrome c-type biogene... 131 9.7e-09 1
TIGR_CMR|SO_0477 - symbol:SO_0477 "cytochrome c-type biog... 128 2.0e-08 1
UNIPROTKB|P32711 - symbol:nrfF "activator of formate-depe... 124 5.3e-08 1
UNIPROTKB|Q5LL33 - symbol:cycL "Cytochrome c-type biogene... 114 6.1e-07 1
TIGR_CMR|SPO_A0196 - symbol:SPO_A0196 "cytochrome c-type ... 114 6.1e-07 1
>TAIR|locus:2037718 [details] [associations]
symbol:CCMH species:3702 "Arabidopsis thaliana"
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0017004
"cytochrome complex assembly" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016491 "oxidoreductase activity" evidence=IDA] [GO:0043234
"protein complex" evidence=IDA] [GO:0019243 "methylglyoxal
catabolic process to D-lactate" evidence=RCA] Pfam:PF03918
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0043234 GO:GO:0005743
GO:GO:0016491 EMBL:AC007591 GO:GO:0009790 eggNOG:COG3088
InterPro:IPR005616 EMBL:AY050392 EMBL:AY097355 EMBL:AY085498
IPI:IPI00527357 PIR:D86286 RefSeq:NP_563966.1 RefSeq:NP_973834.1
UniGene:At.26582 UniGene:At.44195 SMR:Q9XI46 IntAct:Q9XI46
STRING:Q9XI46 EnsemblPlants:AT1G15220.1 EnsemblPlants:AT1G15220.2
GeneID:838089 KEGG:ath:AT1G15220 TAIR:At1g15220
HOGENOM:HOG000005842 InParanoid:Q9XI46 OMA:NISHNVR
ProtClustDB:CLSN2687810 Genevestigator:Q9XI46 Uniprot:Q9XI46
Length = 159
Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
Identities = 106/140 (75%), Positives = 122/140 (87%)
Query: 1 MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
M D+E KK QM DARARNIS NVRCT+CGSQSIEDSQADIAILLR+LIR+EI AGKTD
Sbjct: 1 MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60
Query: 61 KEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGA-AAGIWAYNRHRQKTNVHIMAL 119
KE+Y KLED+FGETVLYAPKFDLQTAALWL+P+++AG AAGI Y +HR + NV IMAL
Sbjct: 61 KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGI-VYQKHRLRKNVDIMAL 119
Query: 120 NLVRGVPLTPKEKETMLDLL 139
NL+RGVPLTPKE+ T+LD+L
Sbjct: 120 NLIRGVPLTPKERVTILDVL 139
>TIGR_CMR|SPO_1881 [details] [associations]
symbol:SPO_1881 "cytochrome c biogenesis family protein"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] Pfam:PF03918 EMBL:CP000031 GenomeReviews:CP000031_GR
KO:K02200 InterPro:IPR005616 HOGENOM:HOG000274670 OMA:AIDTYEF
RefSeq:YP_167118.1 ProteinModelPortal:Q5LS87 GeneID:3193434
KEGG:sil:SPO1881 PATRIC:23377095 ProtClustDB:CLSK835969
Uniprot:Q5LS87
Length = 150
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 39/109 (35%), Positives = 63/109 (57%)
Query: 2 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
A DE+ ++RAR++S +RC C ++SI++S A++A LR L+R+ + AG +D+
Sbjct: 17 AVQPDEVLDDPALESRARSLSEGLRCLVCRNESIDESNAELARDLRLLLRERLVAGDSDE 76
Query: 62 EVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGI-WAYNRHR 109
+ + D +GE VL P LWL+ L+ AAAG+ W + R R
Sbjct: 77 QAVAYIVDRYGEYVLLKPTATGANWLLWLAGPLMLLAAAGMGWGFVRGR 125
>TIGR_CMR|ECH_0636 [details] [associations]
symbol:ECH_0636 "cytochrome c biogenesis family protein"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] Pfam:PF03918 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG3088 KO:K02200
InterPro:IPR005616 HOGENOM:HOG000274670 RefSeq:YP_507446.1
ProteinModelPortal:Q2GGI7 STRING:Q2GGI7 GeneID:3927469
KEGG:ech:ECH_0636 PATRIC:20576724 OMA:ICSGESI
ProtClustDB:CLSK749310 BioCyc:ECHA205920:GJNR-638-MONOMER
Uniprot:Q2GGI7
Length = 134
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/95 (31%), Positives = 57/95 (60%)
Query: 3 SNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKE 62
S D++L +M + RA ++ + VRC C +SI +SQ+ +A +R +IR++I+ G D +
Sbjct: 27 SIDEKLVNNEM-ELRAIDLFKIVRCLICSGESIYESQSQLAYDMRLMIRNKIKNGYNDNQ 85
Query: 63 VYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAG 97
+ +L + +G + P ++ T LW+ P+L+ G
Sbjct: 86 IITELRNYYGNQITILPPYNPYTYPLWILPILIFG 120
>TIGR_CMR|APH_0687 [details] [associations]
symbol:APH_0687 "cytochrome c biogenesis family protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] Pfam:PF03918 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG3088 KO:K02200
InterPro:IPR005616 HOGENOM:HOG000274670 RefSeq:YP_505269.1
ProteinModelPortal:Q2GK32 STRING:Q2GK32 GeneID:3930688
KEGG:aph:APH_0687 PATRIC:20950052 OMA:CIMAVNS
ProtClustDB:CLSK747337 BioCyc:APHA212042:GHPM-706-MONOMER
Uniprot:Q2GK32
Length = 135
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 2 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
++N+D L K Q ++RA + + +C C +S+ +SQ+ A+ +R IR +I +G TD+
Sbjct: 24 SANEDFLSKDQ--ESRAIKLFKATKCMTCSGESLYESQSAFAVEMRSFIRRQIVSGMTDE 81
Query: 62 EVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVA 96
++ L+ +G +L ++ T LW++P+ +A
Sbjct: 82 QILDILKQRYGSAILGDTPYNADTYFLWITPIFLA 116
>TIGR_CMR|SO_0268 [details] [associations]
symbol:SO_0268 "cytochrome c-type biogenesis protein CcmH"
species:211586 "Shewanella oneidensis MR-1" [GO:0003824 "catalytic
activity" evidence=ISS] Pfam:PF03918 EMBL:AE014299
GenomeReviews:AE014299_GR KO:K02200 InterPro:IPR005616
HOGENOM:HOG000274670 InterPro:IPR017565 TIGRFAMs:TIGR03147
OMA:WHTLLLW RefSeq:NP_715908.1 GeneID:1168152 KEGG:son:SO_0268
PATRIC:23520235 ProtClustDB:CLSK905661 Uniprot:Q8EK35
Length = 159
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/95 (33%), Positives = 51/95 (53%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
RA ++ ++RC C +Q++ DS + +A LR + + GK D E+ + + +GE VL
Sbjct: 39 RALELAHSLRCPQCQNQNLIDSNSPVASDLRLEVFKMVDEGKGDDEIIEFMTSRYGEFVL 98
Query: 77 YAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHR 109
Y PK + +T LWL P LL+ G G + R
Sbjct: 99 YKPKMETKTYILWLGPVGLLLLGLIVGFIFIRKQR 133
>UNIPROTKB|Q0C2L1 [details] [associations]
symbol:HNE_1314 "Putative cytochrome c-type biogenesis
protein CycL" species:228405 "Hyphomonas neptunium ATCC 15444"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0017004
"cytochrome complex assembly" evidence=ISS] [GO:0055114
"oxidation-reduction process" evidence=ISS] Pfam:PF03918
GO:GO:0003824 GO:GO:0017004 GO:GO:0055114 EMBL:CP000158
GenomeReviews:CP000158_GR eggNOG:COG3088 InterPro:IPR005616
HOGENOM:HOG000274670 RefSeq:YP_760032.1 ProteinModelPortal:Q0C2L1
STRING:Q0C2L1 GeneID:4289668 KEGG:hne:HNE_1314 PATRIC:32215447
OMA:VACENEP ProtClustDB:CLSK2531996
BioCyc:HNEP228405:GI69-1349-MONOMER Uniprot:Q0C2L1
Length = 132
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 36/107 (33%), Positives = 55/107 (51%)
Query: 14 ADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGE 73
A+ RA+ + R VRC C ++ + S A IA +R IR+ + G TD E+ +GE
Sbjct: 23 AELRAQALMREVRCVACENEPVSQSSAPIAEDMRTRIREMVAEGATDTEIRDWFVSRYGE 82
Query: 74 TVLYAPKF-DLQTAALWLSPLLVAGAAAGIW-AYNRHRQKTNVHIMA 118
VL+ P D + LW P ++ GA AGI R+ ++ N + A
Sbjct: 83 FVLFRPPARDPASWLLWTLPFILLGAGAGIGIVLARNAKRKNGEVEA 129
>TIGR_CMR|CPS_1037 [details] [associations]
symbol:CPS_1037 "cytochrome c-type biogenesis protein
CcmH" species:167879 "Colwellia psychrerythraea 34H" [GO:0017004
"cytochrome complex assembly" evidence=ISS] Pfam:PF03918
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG3088 KO:K02200
InterPro:IPR005616 HOGENOM:HOG000274670 RefSeq:YP_267786.1
ProteinModelPortal:Q487H9 SMR:Q487H9 STRING:Q487H9 GeneID:3520648
KEGG:cps:CPS_1037 PATRIC:21465351 OMA:WHTLLLW
BioCyc:CPSY167879:GI48-1123-MONOMER Uniprot:Q487H9
Length = 155
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 12 QMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDF 71
++ R + +S+ +RC C +Q++ DS + IA LR+ + + +Q GK D E+ + D +
Sbjct: 33 EVTKIRFQALSKELRCPKCQNQNLADSNSPIAADLRRELYELLQQGKADSEIVNFMVDRY 92
Query: 72 GETVLYAPKFDLQTAALWLSPLLV 95
GE VLY P+ T LW P ++
Sbjct: 93 GEFVLYRPRVSELTYILWFGPAVL 116
>UNIPROTKB|P0ABM9 [details] [associations]
symbol:ccmH "CcmH" species:83333 "Escherichia coli K-12"
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0017004
"cytochrome complex assembly" evidence=IEA] InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 Pfam:PF03918 GO:GO:0016021 GO:GO:0005886
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0017004
Gene3D:1.25.40.10 EMBL:U00008 PIR:H64988 RefSeq:NP_416698.1
RefSeq:YP_490432.1 ProteinModelPortal:P0ABM9 SMR:P0ABM9
DIP:DIP-48146N IntAct:P0ABM9 MINT:MINT-225097
EnsemblBacteria:EBESCT00000004393 EnsemblBacteria:EBESCT00000004394
EnsemblBacteria:EBESCT00000004395 EnsemblBacteria:EBESCT00000017025
GeneID:12931487 GeneID:946623 KEGG:ecj:Y75_p2155 KEGG:eco:b2194
PATRIC:32119747 EchoBASE:EB1983 EcoGene:EG12052 eggNOG:COG3088
HOGENOM:HOG000274683 KO:K02200 OMA:RAGYVAY ProtClustDB:CLSK880326
BioCyc:EcoCyc:EG12052-MONOMER BioCyc:ECOL316407:JW2182-MONOMER
Genevestigator:P0ABM9 InterPro:IPR005616 Uniprot:P0ABM9
Length = 350
Score = 140 (54.3 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 33/106 (31%), Positives = 54/106 (50%)
Query: 10 KKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLED 69
K + + + R ++ +RC C + SI DS + IA LR+ + + +Q GK+ KE+ +
Sbjct: 26 KDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVA 85
Query: 70 DFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIWA-YNRHRQKTNV 114
+G V Y P T LW+ P++ G G W Y R R++ V
Sbjct: 86 RYGNFVTYDPPLTPLTVLLWVLPVVAIGI--GGWVIYARSRRRVRV 129
>UNIPROTKB|Q48GL7 [details] [associations]
symbol:cycL "Cytochrome c-type biogenesis protein CycL"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0017004
"cytochrome complex assembly" evidence=ISS] [GO:0055114
"oxidation-reduction process" evidence=ISS] Pfam:PF03918
GO:GO:0003824 GO:GO:0017004 GO:GO:0055114 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG3088 KO:K02200
InterPro:IPR005616 HOGENOM:HOG000274670 RefSeq:YP_275466.1
ProteinModelPortal:Q48GL7 SMR:Q48GL7 STRING:Q48GL7 GeneID:3555637
KEGG:psp:PSPPH_3307 PATRIC:19976016 OMA:AIDTYEF
ProtClustDB:CLSK2485102 Uniprot:Q48GL7
Length = 156
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 31/97 (31%), Positives = 51/97 (52%)
Query: 16 ARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETV 75
AR +++ +RC C +Q I DS A IA LRK I + G++++++ + D +G+ V
Sbjct: 34 ARYSELTKELRCPKCQNQDIADSNAPIAADLRKEIYRMLGEGQSNQQIIDFMVDRYGDFV 93
Query: 76 LYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQ 110
Y P + +T LW P LL+ G + R R+
Sbjct: 94 RYKPSLNARTWLLWFGPAGLLIGGLVVIGFIVGRRRK 130
>UNIPROTKB|Q4KG20 [details] [associations]
symbol:cycL "Cytochrome c-type biogenesis protein CycL"
species:220664 "Pseudomonas protegens Pf-5" [GO:0005506 "iron ion
binding" evidence=ISS] [GO:0017004 "cytochrome complex assembly"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] Pfam:PF03918 GO:GO:0005506 GO:GO:0017004
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0055114
eggNOG:COG3088 KO:K02200 InterPro:IPR005616 HOGENOM:HOG000274670
OMA:AIDTYEF RefSeq:YP_258813.1 ProteinModelPortal:Q4KG20 SMR:Q4KG20
STRING:Q4KG20 GeneID:3477541 KEGG:pfl:PFL_1687 PATRIC:19872603
ProtClustDB:CLSK2486380 BioCyc:PFLU220664:GIX8-1695-MONOMER
Uniprot:Q4KG20
Length = 156
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
R +++ +RC C +Q I DS A IA LRK I + GK ++++ + D +G+ V
Sbjct: 35 RFHELTKELRCPKCQNQDIADSNAPIAADLRKEIFRMLGEGKDNQQIIDFMVDRYGDFVR 94
Query: 77 YAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHR 109
Y P +TA LW P LL+ G + R R
Sbjct: 95 YRPALTGKTALLWFGPAGLLLGGLVIIVVIVRRRR 129
>TIGR_CMR|SO_0477 [details] [associations]
symbol:SO_0477 "cytochrome c-type biogenesis protein NrfF
precursor" species:211586 "Shewanella oneidensis MR-1" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] Pfam:PF03918 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016829 KO:K02200
InterPro:IPR005616 HOGENOM:HOG000274670 RefSeq:NP_716113.1
ProteinModelPortal:Q8CVD6 GeneID:1168349 KEGG:son:SO_0477
PATRIC:23520647 OMA:NPLFRSP ProtClustDB:CLSK905762 Uniprot:Q8CVD6
Length = 149
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 33/89 (37%), Positives = 47/89 (52%)
Query: 21 ISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPK 80
IS+ +RC +Q++ +SQA IA L+ I ++ G EV + +GE + Y P+
Sbjct: 49 ISKELRCPMATNQTLFESQAPIAHELKGQIFSLLEQGYKRDEVLDFMVQRYGEKIRYQPE 108
Query: 81 FDLQTAALWLSPL--LVAGAAAGIWAYNR 107
F T ALWL PL LVAG G+ R
Sbjct: 109 FKPSTMALWLGPLVLLVAGLGLGLTLIKR 137
>UNIPROTKB|P32711 [details] [associations]
symbol:nrfF "activator of formate-dependent nitrite
reductase complex" species:83333 "Escherichia coli K-12"
[GO:0018378 "cytochrome c-heme linkage via heme-L-cysteine"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0042597 "periplasmic space" evidence=IEA] Pfam:PF03918
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 EMBL:U00006 GO:GO:0042597
eggNOG:COG3088 InterPro:IPR005616 EMBL:X72298 GO:GO:0018378
PIR:F57987 RefSeq:NP_418499.1 RefSeq:YP_492218.1
ProteinModelPortal:P32711 SMR:P32711
EnsemblBacteria:EBESCT00000002930 EnsemblBacteria:EBESCT00000015800
GeneID:12933684 GeneID:948578 KEGG:ecj:Y75_p3962 KEGG:eco:b4075
PATRIC:32123699 EchoBASE:EB1892 EcoGene:EG11949
HOGENOM:HOG000274670 KO:K04017 OMA:AVSMRHE ProtClustDB:PRK10144
BioCyc:EcoCyc:EG11949-MONOMER BioCyc:ECOL316407:JW4036-MONOMER
Genevestigator:P32711 InterPro:IPR017565 TIGRFAMs:TIGR03147
Uniprot:P32711
Length = 127
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
+A NI+ +RC C +Q++ +S A +A+ +R + + GK + E+ + + +G+ V
Sbjct: 34 QALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVR 93
Query: 77 YAPKFDLQTAALWLSPL-LVAGAAAGIWAYNRHR 109
Y P QT LW P+ L+ A +W R
Sbjct: 94 YNPPLTGQTLVLWALPVVLLLLMALILWRVRAKR 127
>UNIPROTKB|Q5LL33 [details] [associations]
symbol:cycL "Cytochrome c-type biogenesis protein CycL"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0017004 "cytochrome
complex assembly" evidence=ISS] Pfam:PF03918 GO:GO:0017004
EMBL:CP000032 GenomeReviews:CP000032_GR KO:K02200
InterPro:IPR005616 HOGENOM:HOG000274670 RefSeq:YP_165025.1
ProteinModelPortal:Q5LL33 GeneID:3196924 KEGG:sil:SPOA0196
PATRIC:23381726 OMA:HSSTARE Uniprot:Q5LL33
Length = 150
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/99 (26%), Positives = 52/99 (52%)
Query: 15 DARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74
+ R R+++ +RC C S++I DS + A + ++R+ I G +D E+++ +G+
Sbjct: 28 EPRVRDLAVLLRCPVCQSENILDSHSSTAREMLVILRERIAEGMSDAEIFEFFRTRYGDY 87
Query: 75 VLYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQK 111
VL +P +WL P L++ G + RH+++
Sbjct: 88 VLLSPPMTGPGRIVWLVPAGLVLLGLGVFMLILARHKRR 126
>TIGR_CMR|SPO_A0196 [details] [associations]
symbol:SPO_A0196 "cytochrome c-type biogenesis protein
CycL" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0017004 "cytochrome complex
assembly" evidence=ISS] Pfam:PF03918 GO:GO:0017004 EMBL:CP000032
GenomeReviews:CP000032_GR KO:K02200 InterPro:IPR005616
HOGENOM:HOG000274670 RefSeq:YP_165025.1 ProteinModelPortal:Q5LL33
GeneID:3196924 KEGG:sil:SPOA0196 PATRIC:23381726 OMA:HSSTARE
Uniprot:Q5LL33
Length = 150
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/99 (26%), Positives = 52/99 (52%)
Query: 15 DARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74
+ R R+++ +RC C S++I DS + A + ++R+ I G +D E+++ +G+
Sbjct: 28 EPRVRDLAVLLRCPVCQSENILDSHSSTAREMLVILRERIAEGMSDAEIFEFFRTRYGDY 87
Query: 75 VLYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQK 111
VL +P +WL P L++ G + RH+++
Sbjct: 88 VLLSPPMTGPGRIVWLVPAGLVLLGLGVFMLILARHKRR 126
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 159 142 0.00091 102 3 11 22 0.45 31
30 0.47 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 584 (62 KB)
Total size of DFA: 129 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.42u 0.23s 15.65t Elapsed: 00:00:01
Total cpu time: 15.42u 0.23s 15.65t Elapsed: 00:00:01
Start: Sat May 11 02:02:21 2013 End: Sat May 11 02:02:22 2013