BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031429
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45406|CCMH_RHIME Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti
(strain 1021) GN=ccmH PE=3 SV=2
Length = 151
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 12/143 (8%)
Query: 1 MASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTD 60
A N DE+ +ARAR IS +RC C +QSI+DS A++A LR L+R+ ++ G +D
Sbjct: 19 FAVNPDEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSD 78
Query: 61 KEVYKKLEDDFGETVLYAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHRQKTNVHIMA 118
+ V + +GE VL P+ + +T LW P LLVAG + A R +
Sbjct: 79 EAVISYVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR------- 131
Query: 119 LNLVRGVPLTPKEKETMLDLLTP 141
V G PL+ +EKE + LL P
Sbjct: 132 ---VPGAPLSDEEKERLDRLLRP 151
>sp|Q00501|CCMH_RHOCB Cytochrome c-type biogenesis protein ccl2 OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=ccl2 PE=3
SV=1
Length = 149
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 2 ASNDDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDK 61
A DE+ +ARAR IS+ +RC C ++I++S A ++ LR +R+ + AG +D
Sbjct: 17 AVQPDEVLSDPGLEARARQISQVLRCPVCQGENIDESNAGVSRDLRLAVRERLVAGDSDA 76
Query: 62 EVYKKLEDDFGETVLYAPKFDLQTAAL-WLSPLLVAGAAAGI--WAYNRHRQKTNVHIMA 118
+V ++D FGE VL+ P+ L W+ P ++ A GI W R R++ V +++
Sbjct: 77 QVIDYIKDRFGEYVLFEPERRGANLILYWIGPAVLVVALGGIFLWLRGRRREEEPVPVLS 136
>sp|P45405|CCMH_BRAJA Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium
japonicum (strain USDA 110) GN=ccmH PE=3 SV=2
Length = 160
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 6 DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYK 65
DE+ + RAR++SR +RC C +QSI+DS A +A LR L+R+ I AG ++ +V
Sbjct: 25 DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84
Query: 66 KLEDDFGETVLYAPKFDLQ 84
L +GE VL P+F+ Q
Sbjct: 85 FLVARYGEFVLLKPRFERQ 103
>sp|Q9I3N0|CCMH_PSEAE Cytochrome c-type biogenesis protein CcmH OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ccmH PE=1 SV=1
Length = 155
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
R RN+++ +RC C +Q I DS A IA LRK I ++Q GK+D E+ + +G+ V
Sbjct: 35 RFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVR 94
Query: 77 YAPKFDLQTAALWLSP---LLVAGAAAGIWAYNRHRQKTNVH 115
Y P + +T LW P LL G+ R R V
Sbjct: 95 YKPPVNERTWLLWFGPGALLLFGVLVIGVIVLRRRRTAAKVQ 136
>sp|P52226|CCMH_PSEFL Cytochrome c-type biogenesis protein CcmH OS=Pseudomonas
fluorescens GN=ccmH PE=3 SV=1
Length = 156
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
R R++++ +RC C +Q I DS A IA LR+ I + GK D+++ + D +G+ V
Sbjct: 34 RFRDLTKELRCPKCQNQDIADSNAPIATDLRREIFRMLGEGKDDQQIIDFMVDRYGDFVR 93
Query: 77 YAPKFDLQTAALWLSP--LLVAGAAAGIWAYNRHR 109
Y P +TA LW P LL+AG R R
Sbjct: 94 YKPALTGKTALLWFGPAGLLLAGVVVMAVIVRRRR 128
>sp|P0ABN0|CCMH_SHIFL Cytochrome c-type biogenesis protein CcmH OS=Shigella flexneri
GN=ccmH PE=3 SV=1
Length = 350
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 6 DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYK 65
DE +++Q R ++ +RC C + SI DS + IA LR+ + + +Q GK+ KE+
Sbjct: 27 DEAQEQQF-----RQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVD 81
Query: 66 KLEDDFGETVLYAPKFDLQTAALWLSPLLVAG 97
+ +G V Y P T LW+ P++ G
Sbjct: 82 YMVARYGNFVTYDPPLTPLTVLLWVLPVVAIG 113
>sp|P0ABM9|CCMH_ECOLI Cytochrome c-type biogenesis protein CcmH OS=Escherichia coli
(strain K12) GN=ccmH PE=1 SV=1
Length = 350
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 6 DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYK 65
DE +++Q R ++ +RC C + SI DS + IA LR+ + + +Q GK+ KE+
Sbjct: 27 DEAQEQQF-----RQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVD 81
Query: 66 KLEDDFGETVLYAPKFDLQTAALWLSPLLVAG 97
+ +G V Y P T LW+ P++ G
Sbjct: 82 YMVARYGNFVTYDPPLTPLTVLLWVLPVVAIG 113
>sp|P46458|CCMH_HAEIN Putative cytochrome c-type biogenesis protein CcmH OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=ccmH PE=5 SV=1
Length = 459
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 21 ISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPK 80
+++++RC C + +I DS A IA+ +R + + +Q GK+ +V + +G V Y P
Sbjct: 38 LTQSLRCPQCQNNNIADSNATIAVDMRGKVFELLQEGKSKNDVVDYMVARYGNFVTYDPP 97
Query: 81 FDLQTAALWLSP 92
T LW++P
Sbjct: 98 ITASTLVLWIAP 109
>sp|Q8X5S5|NRFF_ECO57 Formate-dependent nitrite reductase complex subunit NrfF
OS=Escherichia coli O157:H7 GN=nrfF PE=3 SV=1
Length = 127
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 18 ARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLY 77
A NI+ +RC C +Q++ +S A +A+ +R + + GK++ E+ + + +G+ V Y
Sbjct: 35 ALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDFVRY 94
Query: 78 APKFDLQT 85
P QT
Sbjct: 95 NPPLTGQT 102
>sp|P32711|NRFF_ECOLI Formate-dependent nitrite reductase complex subunit NrfF
OS=Escherichia coli (strain K12) GN=nrfF PE=3 SV=1
Length = 127
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 18 ARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLY 77
A NI+ +RC C +Q++ +S A +A+ +R + + GK + E+ + + +G+ V Y
Sbjct: 35 ALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRY 94
Query: 78 APKFDLQT 85
P QT
Sbjct: 95 NPPLTGQT 102
>sp|P44942|NRFF_HAEIN Formate-dependent nitrite reductase complex bifunctional subunit
NrfFG OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=nrfF PE=3 SV=2
Length = 384
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 17 RARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVL 76
RA +++++RC C +Q++ +S + IA LR + + GK+++++ K+ FG+ V
Sbjct: 51 RAVELAKSLRCPQCQNQNLVESNSPIAYDLRLEVYKMVDEGKSNQQIIDKMTARFGDFVN 110
Query: 77 YAPKFDLQTA 86
Y P F TA
Sbjct: 111 YKPPFKWNTA 120
>sp|Q754Z2|LCL3_ASHGO Probable endonuclease LCL3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=LCL3 PE=3 SV=1
Length = 276
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 79 PKFDLQTAALWLSPLLVAGAAAGIWAYNRH-RQKTNVHIMALNLVR 123
P LQ ++LS LL G A A+NRH RQ T+VH + N+ R
Sbjct: 9 PAHLLQAKVIFLSFLLTGGFVATYSAFNRHLRQITSVHDIPTNVFR 54
>sp|Q5U3H9|SPIR2_DANRE Protein spire homolog 2 OS=Danio rerio GN=spire2 PE=2 SV=1
Length = 606
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)
Query: 44 ILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLLVAGAAAGIW 103
+ L K +R ++ K +++ + L +F T D++ L ++V G
Sbjct: 262 VQLMKELRQGVKLKKVEEQPFNPLPTEFSLTPFEMLMQDIRLRKYKLRKVVVDGNIPTCV 321
Query: 104 AYNRHRQKTNVHIMALNLVRG-VPLTPKEKETMLDLLTPPPPQRP 147
K N H + L+ +R PL P + ++ PPPPQRP
Sbjct: 322 -------KRNAHELILDFIRSRPPLKPVSERSL-----PPPPQRP 354
>sp|Q5FI43|RSMG_LACAC Ribosomal RNA small subunit methyltransferase G OS=Lactobacillus
acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM)
GN=rsmG PE=3 SV=1
Length = 240
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 34 SIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTA 86
+I DS A L+ LI + G TD E+ +D G+ LY KFDL TA
Sbjct: 99 TIVDSLAKRLTFLKNLIE---KLGLTDVELVHGRAEDVGQNKLYREKFDLVTA 148
>sp|Q6FUI7|CYM1_CANGA Mitochondrial presequence protease OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=CYM1 PE=3 SV=1
Length = 990
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 31 GSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVY------KKLEDDFGETVLYA 78
GSQ++E+ ++ + L ++ I +++ + K D ++ K + DFG +LY+
Sbjct: 370 GSQNVEEFKSKVFDLFKEFIENDVDSNKVDAIIHQLELSKKDQKADFGLQILYS 423
>sp|P11544|PALY_RHOTO Phenylalanine/tyrosine ammonia-lyase OS=Rhodosporidium toruloides
GN=PAL PE=1 SV=2
Length = 716
Score = 29.6 bits (65), Expect = 7.3, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 38 SQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQTAALWLSPLL 94
+Q ++A +RKL+ A ++EV K++DD E +L ++ L+T+ WL PL+
Sbjct: 324 TQIEVAGNIRKLLEGSRFAVHHEEEV--KVKDD--EGILRQDRYPLRTSPQWLGPLV 376
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,946,492
Number of Sequences: 539616
Number of extensions: 2462387
Number of successful extensions: 9872
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9858
Number of HSP's gapped (non-prelim): 24
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)