Query 031431
Match_columns 159
No_of_seqs 127 out of 870
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:00:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 3.1E-42 6.8E-47 256.2 18.7 149 1-154 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 1.9E-34 4.1E-39 213.5 19.8 144 4-153 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 4.6E-17 1E-21 116.3 17.1 137 5-151 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 1.3E-13 2.9E-18 98.3 20.3 106 4-122 2-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 5.5E-14 1.2E-18 101.9 17.0 132 6-151 1-142 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.5 1.7E-12 3.7E-17 92.4 16.3 135 6-151 1-138 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.5 3.8E-12 8.2E-17 91.1 18.1 135 4-150 2-139 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.5 1.3E-12 2.8E-17 94.4 15.4 136 6-151 1-140 (142)
9 cd07813 COQ10p_like Coenzyme Q 99.5 2.9E-12 6.3E-17 92.6 14.4 134 6-152 1-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 1.1E-11 2.3E-16 88.7 16.6 106 4-122 1-107 (138)
11 cd07822 SRPBCC_4 Ligand-bindin 99.4 2.9E-11 6.3E-16 86.2 17.3 108 6-123 2-112 (141)
12 cd07812 SRPBCC START/RHO_alpha 99.4 8.3E-11 1.8E-15 81.7 15.8 134 7-149 2-139 (141)
13 cd05018 CoxG Carbon monoxide d 99.3 9.8E-11 2.1E-15 84.1 14.8 137 4-150 1-142 (144)
14 cd07825 SRPBCC_7 Ligand-bindin 99.3 8.7E-11 1.9E-15 85.0 13.3 136 6-151 2-143 (144)
15 cd07814 SRPBCC_CalC_Aha1-like 99.3 1.5E-10 3.2E-15 82.7 14.1 135 6-151 2-137 (139)
16 cd07818 SRPBCC_1 Ligand-bindin 99.3 4.1E-10 8.8E-15 82.1 14.6 112 4-125 2-119 (150)
17 cd07817 SRPBCC_8 Ligand-bindin 99.3 4.5E-10 9.7E-15 80.3 14.4 107 5-125 1-108 (139)
18 cd07824 SRPBCC_6 Ligand-bindin 99.2 1.3E-09 2.8E-14 79.7 16.6 108 5-124 2-113 (146)
19 cd08860 TcmN_ARO-CYC_like N-te 99.2 1.2E-09 2.7E-14 80.6 16.1 134 5-149 2-140 (146)
20 cd07823 SRPBCC_5 Ligand-bindin 99.2 1.2E-09 2.6E-14 79.8 15.2 139 6-151 1-144 (146)
21 PF03364 Polyketide_cyc: Polyk 99.2 2.7E-09 5.8E-14 75.9 14.0 125 12-147 1-129 (130)
22 COG3427 Carbon monoxide dehydr 99.2 1.2E-09 2.7E-14 80.3 12.4 142 4-153 1-145 (146)
23 cd07820 SRPBCC_3 Ligand-bindin 99.1 2.1E-09 4.5E-14 77.8 13.0 107 6-123 1-112 (137)
24 PRK10724 hypothetical protein; 99.1 9.1E-09 2E-13 77.0 14.6 133 5-150 16-150 (158)
25 PF06240 COXG: Carbon monoxide 99.0 5.3E-08 1.1E-12 71.1 14.2 133 9-151 2-139 (140)
26 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 1.5E-07 3.2E-12 69.9 12.5 129 3-155 10-139 (157)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.7 3.5E-07 7.5E-12 65.8 12.0 138 5-152 2-144 (145)
28 COG5637 Predicted integral mem 98.7 2.7E-07 5.8E-12 69.9 10.0 107 4-125 70-179 (217)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.6 5.1E-06 1.1E-10 60.3 15.6 136 6-152 2-142 (143)
30 cd07826 SRPBCC_CalC_Aha1-like_ 98.6 2.6E-06 5.6E-11 62.1 13.9 138 5-153 1-142 (142)
31 cd08893 SRPBCC_CalC_Aha1-like_ 98.6 2.2E-06 4.7E-11 60.9 13.2 134 5-152 1-135 (136)
32 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 1.8E-05 4E-10 57.6 17.8 134 6-152 2-145 (146)
33 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 4.3E-06 9.3E-11 60.5 13.4 133 6-152 2-138 (139)
34 cd08895 SRPBCC_CalC_Aha1-like_ 98.5 1.2E-05 2.6E-10 58.7 15.7 135 5-152 1-145 (146)
35 cd08897 SRPBCC_CalC_Aha1-like_ 98.5 3.6E-06 7.7E-11 60.5 12.4 127 5-152 1-132 (133)
36 cd08876 START_1 Uncharacterize 98.5 4.8E-05 1E-09 57.9 17.9 144 4-151 41-194 (195)
37 cd08891 SRPBCC_CalC Ligand-bin 98.4 2E-05 4.3E-10 57.7 14.4 137 6-152 2-148 (149)
38 COG3832 Uncharacterized conser 98.1 0.00013 2.8E-09 53.9 13.0 138 4-152 8-148 (149)
39 PF08327 AHSA1: Activator of H 98.1 0.0001 2.2E-09 51.4 11.5 121 13-151 1-123 (124)
40 cd08892 SRPBCC_Aha1 Putative h 98.0 0.00013 2.9E-09 51.9 10.9 122 5-151 1-124 (126)
41 cd08901 SRPBCC_CalC_Aha1-like_ 97.9 0.00022 4.8E-09 51.4 10.8 127 6-153 2-132 (136)
42 COG2867 Oligoketide cyclase/li 97.9 0.00032 6.9E-09 51.6 11.4 111 5-125 3-114 (146)
43 PTZ00220 Activator of HSP-90 A 97.5 0.0011 2.4E-08 47.8 9.0 120 12-152 1-127 (132)
44 cd08874 START_STARD9-like C-te 97.4 0.023 5E-07 44.3 15.4 124 5-130 46-183 (205)
45 cd08905 START_STARD1-like Chol 97.1 0.048 1E-06 42.4 14.8 144 5-152 50-207 (209)
46 cd08873 START_STARD14_15-like 97.1 0.1 2.3E-06 41.5 16.6 147 4-154 77-235 (235)
47 cd08913 START_STARD14-like Lip 97.0 0.11 2.3E-06 41.6 15.7 144 5-153 82-239 (240)
48 cd08903 START_STARD5-like Lipi 96.7 0.18 3.9E-06 39.1 16.4 143 6-152 48-206 (208)
49 cd08871 START_STARD10-like Lip 96.5 0.26 5.6E-06 38.4 16.8 147 5-155 48-204 (222)
50 cd08868 START_STARD1_3_like Ch 96.5 0.24 5.3E-06 38.1 14.7 144 6-153 50-207 (208)
51 cd08863 SRPBCC_DUF1857 DUF1857 96.5 0.2 4.4E-06 36.9 14.3 63 15-86 18-82 (141)
52 cd08906 START_STARD3-like Chol 96.5 0.27 5.9E-06 38.2 17.2 144 4-152 49-207 (209)
53 cd00177 START Lipid-binding ST 96.5 0.22 4.7E-06 36.9 17.7 143 4-150 39-191 (193)
54 PF08982 DUF1857: Domain of un 96.2 0.35 7.6E-06 35.9 14.3 68 6-82 2-79 (149)
55 cd08877 START_2 Uncharacterize 96.1 0.44 9.5E-06 36.9 16.7 146 3-152 45-213 (215)
56 cd08914 START_STARD15-like Lip 95.6 0.91 2E-05 36.2 14.0 116 4-122 78-205 (236)
57 cd08869 START_RhoGAP C-termina 95.1 1.1 2.4E-05 34.4 15.4 119 5-127 45-172 (197)
58 cd08872 START_STARD11-like Cer 94.8 1.6 3.5E-05 34.6 14.8 144 5-154 53-227 (235)
59 smart00234 START in StAR and p 94.6 1.5 3.2E-05 33.2 16.6 146 4-153 45-202 (206)
60 cd08867 START_STARD4_5_6-like 93.4 2.8 6E-05 32.1 16.5 142 6-151 48-205 (206)
61 cd08870 START_STARD2_7-like Li 93.3 3 6.4E-05 32.2 17.0 145 4-152 50-207 (209)
62 PF10698 DUF2505: Protein of u 92.8 2.9 6.3E-05 30.9 14.5 107 6-123 1-128 (159)
63 cd08911 START_STARD7-like Lipi 92.1 4.5 9.6E-05 31.2 17.6 145 4-152 45-205 (207)
64 PF01852 START: START domain; 91.1 5.3 0.00011 30.0 18.2 146 4-155 46-204 (206)
65 cd08908 START_STARD12-like C-t 90.3 7.3 0.00016 30.3 13.4 119 4-126 52-178 (204)
66 cd08910 START_STARD2-like Lipi 85.0 16 0.00034 28.2 15.3 142 4-151 49-204 (207)
67 COG4276 Uncharacterized conser 83.5 15 0.00034 26.9 13.0 113 4-125 2-120 (153)
68 KOG3177 Oligoketide cyclase/li 70.7 32 0.0007 27.1 7.5 105 9-124 73-182 (227)
69 cd08902 START_STARD4-like Lipi 69.9 51 0.0011 25.7 13.3 122 6-134 49-183 (202)
70 PF11485 DUF3211: Protein of u 60.5 5.9 0.00013 29.0 1.7 41 4-46 1-42 (136)
71 KOG2445 Nuclear pore complex c 55.6 29 0.00064 29.0 5.1 24 97-121 297-320 (361)
72 PRK06628 lipid A biosynthesis 53.6 23 0.00051 28.6 4.3 44 115-158 238-281 (290)
73 TIGR02208 lipid_A_msbB lipid A 49.1 28 0.00061 28.3 4.1 39 116-158 249-287 (305)
74 PRK05645 lipid A biosynthesis 46.9 32 0.0007 27.7 4.1 40 115-158 238-277 (295)
75 cd08904 START_STARD6-like Lipi 46.8 1.3E+02 0.0029 23.2 16.6 139 6-148 48-200 (204)
76 PRK06553 lipid A biosynthesis 46.4 30 0.00066 28.2 3.9 44 115-158 257-300 (308)
77 PF15499 Peptidase_C98: Ubiqui 45.6 22 0.00048 28.9 2.8 43 14-60 143-190 (275)
78 PRK08733 lipid A biosynthesis 42.1 42 0.00091 27.3 4.1 40 115-158 248-287 (306)
79 PRK06860 lipid A biosynthesis 41.8 41 0.00089 27.4 4.0 40 115-158 251-290 (309)
80 PRK08734 lipid A biosynthesis 41.0 44 0.00095 27.2 4.0 21 138-158 258-278 (305)
81 PRK08943 lipid A biosynthesis 38.9 49 0.0011 27.0 4.1 40 115-158 257-296 (314)
82 PRK08706 lipid A biosynthesis 38.6 45 0.00097 26.8 3.7 40 115-158 232-271 (289)
83 TIGR02207 lipid_A_htrB lipid A 38.6 50 0.0011 26.7 4.1 40 115-158 245-284 (303)
84 PRK08419 lipid A biosynthesis 35.8 72 0.0016 25.7 4.5 23 136-158 259-281 (298)
85 PF03279 Lip_A_acyltrans: Bact 33.5 84 0.0018 25.1 4.6 41 114-158 246-286 (295)
86 PRK05646 lipid A biosynthesis 33.1 64 0.0014 26.3 3.9 40 115-158 249-288 (310)
87 cd07984 LPLAT_LABLAT-like Lyso 33.0 81 0.0018 23.1 4.1 22 137-158 163-184 (192)
88 PF08473 VGCC_alpha2: Neuronal 32.8 1.3E+02 0.0028 20.6 4.6 17 72-88 38-54 (94)
89 KOG0301 Phospholipase A2-activ 30.7 2.9E+02 0.0063 25.7 7.7 72 4-83 147-226 (745)
90 PRK07920 lipid A biosynthesis 30.5 76 0.0016 25.7 3.9 39 116-158 236-274 (298)
91 PRK06946 lipid A biosynthesis 26.6 1.1E+02 0.0023 24.8 4.1 21 138-158 255-275 (293)
92 PF13410 GST_C_2: Glutathione 25.7 1.5E+02 0.0033 17.6 3.9 23 133-155 4-26 (69)
93 PF10470 AKAP7_RIRII_bdg: PKA- 24.3 1.3E+02 0.0028 18.7 3.1 25 131-155 8-33 (61)
94 cd00307 RuBisCO_small_like Rib 22.5 88 0.0019 20.8 2.4 19 141-159 45-63 (84)
95 PF00101 RuBisCO_small: Ribulo 22.3 83 0.0018 21.6 2.3 17 143-159 61-77 (99)
96 PF03000 NPH3: NPH3 family; I 21.6 66 0.0014 26.0 1.9 17 141-157 220-236 (258)
97 PRK08905 lipid A biosynthesis 21.4 1.4E+02 0.0031 24.0 3.9 21 138-158 245-265 (289)
98 COG1560 HtrB Lauroyl/myristoyl 20.9 1.3E+02 0.0029 24.8 3.6 21 138-158 269-289 (308)
99 cd03527 RuBisCO_small Ribulose 20.6 1E+02 0.0022 21.3 2.4 17 142-158 61-77 (99)
100 PRK08025 lipid A biosynthesis 20.4 1.4E+02 0.0031 24.1 3.7 20 139-158 268-287 (305)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=3.1e-42 Score=256.24 Aligned_cols=149 Identities=42% Similarity=0.636 Sum_probs=135.0
Q ss_pred CccEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCC-cEEEEEEecCCceeEEEEEEEEEecccc
Q 031431 1 MGVVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPG-SIKKFTIVEGGQVKYAKHKIEEEDKVNL 78 (159)
Q Consensus 1 m~~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~G-svR~~~~~~g~~~~~~kErl~~~D~~~~ 78 (159)
|++++++.|+++++||+++|+++ +..+++|+++|++|++++++||||++| |||.|+|.+|++..++|||++.+|++++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 99999999999999999999999 888999999999999999999999877 9999999999999999999999999999
Q ss_pred eEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhC
Q 031431 79 KLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQAN 154 (159)
Q Consensus 79 ~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~ 154 (159)
+++|+++||+++.+|+.|..+.++ +|.++|+|+++|+++|++.++..++|+... +++..|+|++|+||++|
T Consensus 81 ~~~y~viEGd~l~~~~~~~~~~~~--~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~---~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 81 TITYTVIEGDVLGDYKSFKSTIQK--IPKGDGGCVVKWTIEYEKKGEDVPPPEKYL---DFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEEETTGTTTEEEEEEEEE--EEETTSCEEEEEEEEEEESSTSCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeccccccEEEEEEEEEe--cCCCCCceEEEEEEEEEecCCCCCCcHHHH---HHHHHHHHHHHHHHhcC
Confidence 999999999999999998887764 598888999999999999988764444332 47999999999999997
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=1.9e-34 Score=213.47 Aligned_cols=144 Identities=38% Similarity=0.566 Sum_probs=123.8
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCc-ccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLP-SKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK 81 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~l-p~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 81 (159)
++++.+++|+||||+||+++ ||.+.+ +.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|+++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 47899999999999999999 998534 55777 7999999999999999999999988777899999999999999999
Q ss_pred EEEEeccccC-CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhh
Q 031431 82 YSVIEGNDLA-DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQA 153 (159)
Q Consensus 82 y~v~eg~~l~-~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~ 153 (159)
|++++|+++. .|++|++++ +|.|.++++|+++|+++|++.+++.++|+..+ +.+..++++++.|++.
T Consensus 80 y~vveg~~~~~~~~~y~~t~--~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEI--KFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIK---AGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEecccccCceEEEEEEE--EEEECCCCCEEEEEEEEEEECCCCCCCHHHHH---hHHHHHHHHHHHHHhc
Confidence 9999999865 578877766 55898778999999999999988645454443 4778889999998875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.78 E-value=4.6e-17 Score=116.32 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=106.2
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
.++.+++|++|+++||+++ |+.+ +++|+|. +++++++++..++|+++.+.+..| ..+++++..+|+.++.++|+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 5788999999999999999 9998 7999997 888888776556899999998766 47889999999987789999
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL 151 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
+.+|+. + +..+ ..+++|.|.++|+|.++|+..|++.+. .+.+.......+.....++.|++++
T Consensus 77 ~~~~~~-~-~~~~--~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 77 IVEGPL-P-VKNY--VATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred ecCCCC-C-cccc--eEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 998732 1 1222 335567888777899999999999865 3333333355566677788887765
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.65 E-value=1.3e-13 Score=98.33 Aligned_cols=106 Identities=18% Similarity=0.347 Sum_probs=81.6
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
.+++.++.|+|||++||+++ |+.+ +++|.|+ +.++++.+++ ++|..+.+.... . ..+++++..+|++.+.+.|
T Consensus 2 ~~~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g--~-~~~~~~i~~~~~~~~~~~~ 75 (139)
T PF10604_consen 2 FKVEVSIEVPAPPEAVWDLLSDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAG--R-GTVREEITEYDPEPRRITW 75 (139)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECS--C-SEEEEEEEEEETTTTEEEE
T ss_pred EEEEEEEEECCCHHHHHHHHhChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEecc--c-cceeEEEEEecCCCcEEEE
Confidence 57999999999999999999 9998 8999996 8899877633 445556655433 2 4799999999987899999
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA 122 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~ 122 (159)
++. ...+ .. .+.++++.|.++ ||.++|+.+|++
T Consensus 76 ~~~-~~~~---~~--~~~~~~~~~~~~-gt~v~~~~~~~~ 108 (139)
T PF10604_consen 76 RFV-PSGF---TN--GTGRWRFEPVGD-GTRVTWTVEFEP 108 (139)
T ss_dssp EEE-SSSS---CE--EEEEEEEEEETT-TEEEEEEEEEEE
T ss_pred EEE-ecce---eE--EEEEEEEEEcCC-CEEEEEEEEEEE
Confidence 996 2222 22 345567789875 499999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.63 E-value=5.5e-14 Score=101.86 Aligned_cols=132 Identities=14% Similarity=0.172 Sum_probs=92.3
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCc-------EEEEEEecCCceeEEEEEEEEEeccc
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-------IKKFTIVEGGQVKYAKHKIEEEDKVN 77 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-------vR~~~~~~g~~~~~~kErl~~~D~~~ 77 (159)
++.++.|+||+++||+++ |+.+ +|+|+|+ +++++++++.+. +. .+.+...-. ..+..++...++..
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~ 74 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFE---ARVVLELREREEFP 74 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeee---EEEEEEEEEecCCC
Confidence 357899999999999999 9998 7999997 889998876532 21 111111011 23455666677667
Q ss_pred ceEEEEEEeccccCCCceeEEEEEEEEEECCC-CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPN-GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~-g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
+.+.|++++|++ +.+.. +++|+|.++ ++|.++|.+.+++... .|...++ ...+....++++|.+.+
T Consensus 75 ~~i~~~~~~g~~----~~~~g--~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 75 RELDFEMVEGDF----KRFEG--SWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred ceEEEEEcCCch----hceEE--EEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998864 33444 446688877 6899999999999763 3344444 44555677787777654
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=1.7e-12 Score=92.36 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=90.9
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
++.++.|+||+++||+++ |+.+ +++|.|. +.+++.+.+. .++|+...+....++....+++++..+|+. +.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~-~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPG-RRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCC-cEEEEE
Confidence 367899999999999999 9998 8999997 6777766443 357888888765443334578899988855 668888
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
..+|.. . + ..++.+.|.++ +|.++|+.+|+...-.......++ ..+.....+++.|.+++
T Consensus 78 ~~~~~~-~----~--~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 78 GSSGPF-P----Y--EDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred ecCCCc-c----e--EEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 765532 1 2 34556688755 799999999987321111112222 22333455566665554
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=3.8e-12 Score=91.12 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=86.2
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK 81 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 81 (159)
.+++.++.|+||+++||+++ |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+.++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEE
Confidence 47899999999999999999 9998 8999996 8899886554 3333344455543321111111222 223 56789
Q ss_pred EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
|+..+|... ..+ ..+++|.|.++ +|.++|+.++++... .|.-.++ ..+.....+++.|.+|
T Consensus 78 ~~~~~~~~~---~~~--~~~~~~~~~~~-~t~vt~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 78 WTLVEGEGN---RSQ--EGSYTLTPKGD-GTRVTFDLTVELTVP--LPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEecccce---eEE--EEEEEEEECCC-CEEEEEEEEEEecCC--CCHHHHHHhhhHHHHHHHHhHhhh
Confidence 999887532 222 34566788866 799999999998653 3444443 2222334555555544
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.52 E-value=1.3e-12 Score=94.43 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=88.1
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
++.+++|++|+++||+++ |+.+ +|+|+|. .+++.++++++...++.+... .|....+ +....+|++.+.+.|.
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~i~~~ 75 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW--TSRRVLDPEGRRIVFR 75 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE--EEEEEEcCCCCEEEEE
Confidence 468999999999999999 9998 8999996 455555543322245655555 3332222 3445678878889999
Q ss_pred EEeccc-cCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 84 VIEGND-LADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 84 v~eg~~-l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
.+++.. + ..+.. +++|+|.++++|.|+|..+|++....+.+...++ ...+....+++.|-+++
T Consensus 76 ~~~~~~~~---~~~~g--~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 76 QEEPPPPV---ASMSG--EWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred EeeCCCCh---hhhee--EEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 887422 2 22223 5567898777899999999999865433333333 22233455666655443
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.47 E-value=2.9e-12 Score=92.56 Aligned_cols=134 Identities=14% Similarity=0.131 Sum_probs=93.7
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV 84 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v 84 (159)
++.+++|++|++.||+++ |..+ +|+|+|+ +.+++++++++ .+....++...++....+..++. +++ .+++++..
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~ 75 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAEL 75 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEe
Confidence 367899999999999999 9998 8999997 88999988765 34444455553332233444544 666 55789988
Q ss_pred EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431 85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~ 152 (159)
++|.+ +.+. .+++|.|.++|+|.|+|...|++.+. .+...+. ...+....+++++.+.+.
T Consensus 76 ~~g~~----~~~~--g~w~~~p~~~~~T~v~~~~~~~~~~~--l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 76 VDGPF----KHLE--GEWRFKPLGENACKVEFDLEFEFKSR--LLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred cCCCh----hhce--eEEEEEECCCCCEEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88853 2222 35567998888999999999999863 2222223 444566777777776554
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.46 E-value=1.1e-11 Score=88.68 Aligned_cols=106 Identities=19% Similarity=0.225 Sum_probs=78.0
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
++++.+++|+||+++||+++ |+.+ +|+|+|+ +.+++...+..++|+...++...+ ..+..++.++++.++ +++
T Consensus 1 ~~~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~~-~~~ 74 (138)
T cd08862 1 MKFEATIVIDAPPERVWAVLTDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGHS-FTW 74 (138)
T ss_pred CEEEEEEEEcCCHHHHHHHHHhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCCE-EEE
Confidence 47899999999999999999 9998 8999997 888887654326787666665433 356778888887654 777
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEE
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHA 122 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~ 122 (159)
+... +. ...+.+++|++.++++|.++|+.+|..
T Consensus 75 ~~~~-~~------~~~~~~~~~~~~~~~~t~l~~~~~~~~ 107 (138)
T cd08862 75 TGPA-PG------ISAVHRHEFEAKPDGGVRVTTSESLSG 107 (138)
T ss_pred EecC-CC------EEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence 6532 21 223345667887667899999988875
No 11
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.44 E-value=2.9e-11 Score=86.18 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=79.0
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecC-CceeEEEEEEEEEecccceEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEG-GQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y 82 (159)
++.++.|+||+++||+++ |+.+ +|+|+|. +..++ +. .++|+...+.+..+ +......+++..+|+.+ .+.|
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~---~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~-~~~~ 75 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS-YPEWNPF-VRSAT---GLSLALGARLRFVVKLPGGPPRSFKPRVTEVEPPR-RLAW 75 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc-ccccChh-heeEe---ccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCC-EeEE
Confidence 688999999999999999 9988 8999996 55554 33 45687777776543 23346778889898865 5788
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK 123 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~ 123 (159)
+...++.. ......+++|.|.++++|.++|...|...
T Consensus 76 ~~~~~~~~----~~~~~~~~~~~~~~~~~T~~~~~~~~~g~ 112 (141)
T cd07822 76 RGGLPFPG----LLDGEHSFELEPLGDGGTRFVHRETFSGL 112 (141)
T ss_pred EecCCCCc----EeeEEEEEEEEEcCCCcEEEEEeeEEEEE
Confidence 87766431 12234566778876678999999887653
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=8.3e-11 Score=81.66 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=89.3
Q ss_pred EEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431 7 ESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV 84 (159)
Q Consensus 7 ~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v 84 (159)
+.++.|++|+++||+++ |+.+ +++|+|+ +.+++++++. ...|....+.+..+ .......++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEEE
Confidence 57899999999999999 9998 8999997 8888877654 34566666555412 22356778887777 55688998
Q ss_pred EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCC--CCHHHHHhHHHHHHHHHHHHHH
Q 031431 85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVE--VTEEQAKAGKERVLGVVKGVEA 149 (159)
Q Consensus 85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~--~~~~~~~~~~~~~~~~~k~le~ 149 (159)
..++.. ... ..++.+.+.++++|.++|..++.+..... ..+...+...+.+..+++.++.
T Consensus 78 ~~~~~~---~~~--~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T cd07812 78 TGGGGG---VDG--TGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKA 139 (141)
T ss_pred ecCCCC---cce--eEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHh
Confidence 877653 122 33455678765589999999999976531 2222222333344445554443
No 13
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.34 E-value=9.8e-11 Score=84.12 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=82.6
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC--ceeEEEEEEEEEecccceE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG--QVKYAKHKIEEEDKVNLKL 80 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~--~~~~~kErl~~~D~~~~~~ 80 (159)
++++.+++|++|+++||+++ |..+ +++|+|+ +.+++.++++ .... .++...+. ..-..+-++..+|+. +.+
T Consensus 1 m~~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~-~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 74 (144)
T cd05018 1 MKISGEFRIPAPPEEVWAALNDPEV-LARCIPG-CESLEKIGPN-EYEA--TVKLKVGPVKGTFKGKVELSDLDPP-ESY 74 (144)
T ss_pred CeeeeEEEecCCHHHHHHHhcCHHH-HHhhccc-hhhccccCCC-eEEE--EEEEEEccEEEEEEEEEEEEecCCC-cEE
Confidence 46899999999999999999 9998 8999997 7777766532 1111 11222121 111124455555555 456
Q ss_pred EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
.++....+.. .......++++.|. +++|.++|+++|++.+.. ..+...++ ...+.+..+++.|.+.
T Consensus 75 ~~~~~~~~~~---~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 75 TITGEGKGGA---GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEEEEEcCCC---ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665532221 12234456667887 668999999999987542 22333433 3334445555555443
No 14
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.31 E-value=8.7e-11 Score=84.97 Aligned_cols=136 Identities=11% Similarity=0.145 Sum_probs=87.5
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC--CCCCcEEEEEEec-CCceeEEEEEEEEEecccceEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN--GGPGSIKKFTIVE-GGQVKYAKHKIEEEDKVNLKLK 81 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~--g~~GsvR~~~~~~-g~~~~~~kErl~~~D~~~~~~~ 81 (159)
++.+++|+||+++||+++ |+.+ +|+|.|..... ....++ -++|+...+.... |++ ..+..++..+++.++ ++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~~~~~~-~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~~-l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR-HPEIDGSGTVR-EAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENRL-IA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc-cceeCCCCccc-cccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCCE-EE
Confidence 678999999999999999 9998 89999853322 222333 3678888777654 333 345667888888766 78
Q ss_pred EEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431 82 YSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAKAGKERVLGVVKGVEAYL 151 (159)
Q Consensus 82 y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
|+.. .+..... ...+++|++.++|+|.++++..|...+.. ... .............+..|++|+
T Consensus 78 ~~~~~~~~~~~~-----~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~-~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQEPGG-----HRWRWELEPIGPGRTRVTETYDWSAVTDLKELL-GFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCCCCCc-----eeEEEEEEECCCCcEEEEEEEeccCChhhhhcc-ccCCCCHHHHHHHHHHHHHHh
Confidence 8753 2222111 23456678887778999999988875431 111 000112235566777777765
No 15
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.31 E-value=1.5e-10 Score=82.70 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=87.6
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV 84 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v 84 (159)
++.+++|+||+++||+++ |+.+ +|+|+|+ +..++.....| |+.+.+....++....+..++..+|+. +.+.|+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~ 76 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTW 76 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEe
Confidence 678999999999999999 9998 8999995 22222211222 666655444333335678889999976 4588988
Q ss_pred EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431 85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL 151 (159)
Q Consensus 85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
..++.... .....++.|.|.+ ++|.++|+.++.+... +..............++..|.+++
T Consensus 77 ~~~~~~~~---~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 77 AFSDETPG---PETTVTVTLEETG-GGTRLTLTHSGFPEED--AEQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred cccCCCCC---CceEEEEEEEECC-CCEEEEEEEEccChHh--HHHHHHhCHhhHHHHHHHHHHHHh
Confidence 76642011 1234566778887 5799999999887632 122222334445556666666655
No 16
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=4.1e-10 Score=82.07 Aligned_cols=112 Identities=13% Similarity=0.047 Sum_probs=77.1
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeE---EEEE--cCCCCCCcEEEEEEecCCceeEEEEEEEEEeccc
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKN---VEVL--EGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVN 77 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s---~~~~--eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~ 77 (159)
.+++.++.|++|+++||+++ |+.+ +|+|+|. +.. +... .+..++|+...++...+. .....++..+++.
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p~- 76 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVPN- 76 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCCC-
Confidence 36899999999999999999 9998 8999995 332 2211 233467888777655421 1334566777654
Q ss_pred ceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431 78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE 125 (159)
Q Consensus 78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~ 125 (159)
+.+.|+...++.+.. . ...++.|+|. ++||.++|+.+|+....
T Consensus 77 ~~i~~~~~~~~~~~~--~--~~~~~~~~~~-~~gT~v~~~~~~~~~~~ 119 (150)
T cd07818 77 ERIEYELRFIKPFEA--T--NDVEFTLEPV-GGGTKVTWGMSGELPFP 119 (150)
T ss_pred cEEEEEEEecCCccc--c--ceEEEEEEEc-CCceEEEEEEEecCCch
Confidence 558999876544321 1 2345667888 55799999999987653
No 17
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.26 E-value=4.5e-10 Score=80.29 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=74.1
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
+++.+++|+||+++||+++ |+.+ +|+|.|+ +.+++++.+. +....+.+..|. ......++..+++.+ .+.|.
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~v~~~~~~~-~i~~~ 73 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWRDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGL-SVEWDAEITEQVPNE-RIAWR 73 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHhChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCC-cEEEEEEEeccCCCC-EEEEE
Confidence 3688999999999999999 9998 8999997 8888876442 222223332233 234455666555554 48888
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE 125 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~ 125 (159)
...|.. . . ..+++|.|.++++|.++++..|++...
T Consensus 74 ~~~~~~--~---~--~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 74 SVEGAD--P---N--AGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred ECCCCC--C---c--ceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 766542 2 1 234556887667899999999998753
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.25 E-value=1.3e-09 Score=79.68 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=74.5
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEc--CCCCCCcEEEEEEecC-CceeEEEEEEEEEecccceE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLE--GNGGPGSIKKFTIVEG-GQVKYAKHKIEEEDKVNLKL 80 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~e--G~g~~GsvR~~~~~~g-~~~~~~kErl~~~D~~~~~~ 80 (159)
.+..+..|+||+++||+++ |..+ +|+|+|+ ++++++++ ++.++|+..+++.... +....+.-++..+++ .+.+
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p-~~~~ 78 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEP-LSLL 78 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecC-CcEE
Confidence 4677899999999999999 9998 8999997 88898876 3345776655443322 211234445555545 4457
Q ss_pred EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcC
Q 031431 81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKG 124 (159)
Q Consensus 81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~ 124 (159)
++.. +|++ + ...+++|.|.++ ||.++++.+++..+
T Consensus 79 ~~~~-~g~~----~---~~~~~~~~~~~~-gt~vt~~~~~~~~~ 113 (146)
T cd07824 79 EVRA-SGDL----E---GVGRWTLAPDGS-GTVVRYDWEVRTTK 113 (146)
T ss_pred EEEE-EEee----e---EEEEEEEEEcCC-CEEEEEEEEEEcCH
Confidence 8875 5653 1 124556788644 79999999999854
No 19
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.24 E-value=1.2e-09 Score=80.59 Aligned_cols=134 Identities=13% Similarity=0.174 Sum_probs=83.7
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEE-ecCCceeEEEEEEEEEecccceEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNLKLK 81 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 81 (159)
..+.+++|++||++||+++ |..+ .|.|+|. +.++++++.++ +.|.--.+.. ..|....+..|+ ..|...+++.
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTVR 77 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEEE
Confidence 4678999999999999999 9999 8999997 88888877643 3442221222 223222343343 3678888887
Q ss_pred EE-EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431 82 YS-VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA 149 (159)
Q Consensus 82 y~-v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 149 (159)
+. ...|++ .. ...+++|+|.++ ||.|++..+|+..++.+.....+. +........++.|-+
T Consensus 78 ~~~~~~~p~----~~--m~~~W~f~~~~~-gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~ 140 (146)
T cd08860 78 ARRVETGPF----AY--MNIRWEYTEVPE-GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKK 140 (146)
T ss_pred EEEecCCCc----ce--eeeeEEEEECCC-CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHH
Confidence 73 334432 22 234556788865 599999999998755443333333 222333444444433
No 20
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.22 E-value=1.2e-09 Score=79.81 Aligned_cols=139 Identities=15% Similarity=0.189 Sum_probs=81.2
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEE--EEEEEEEecccceEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYA--KHKIEEEDKVNLKLKY 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~--kErl~~~D~~~~~~~y 82 (159)
++.+++|++||++||+++ |..+ ++.|+|+ +++++.+ |++. ..-.+++..|.-...+ +=++..++++.+++.+
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 75 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL 75 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence 357899999999999999 9998 8999997 7777653 3211 1122333322211112 1245556646777776
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC-CCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV-EVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~-~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
+.-..+.-.. ..-+..+++++.|. +++|.++|.++++..+.. ......++ .+++.+..+++.|.+.+
T Consensus 76 ~~~g~~~~~~-g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 76 EATGKDARGQ-GTAEATVTLRLSPA-GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEEecCCCc-ceEEEEEEEEEEec-CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 6543111101 12234566677884 568999999999876542 23333344 34444555666555543
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.15 E-value=2.7e-09 Score=75.93 Aligned_cols=125 Identities=18% Similarity=0.308 Sum_probs=79.9
Q ss_pred EcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEEEecccc
Q 031431 12 YAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDL 90 (159)
Q Consensus 12 i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v~eg~~l 90 (159)
|+||+++||+++ |..+ +|.|+|. ++++++++.++. +..-.+....++.......++. .+...+ +.+..++|++
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~~- 74 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVT-EDPPER-IRFEQISGPF- 74 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEE-EECTTT-EEEESSETTE-
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEE-EEEeee-eeeeecCCCc-
Confidence 789999999999 9998 8999996 889999988754 3333455554433234455544 344444 7778877764
Q ss_pred CCCceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHH
Q 031431 91 ADYKLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGV 147 (159)
Q Consensus 91 ~~Y~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~l 147 (159)
+.+.. +++++|.++ |+|.++++.+++.....+++...++ ...+....++++|
T Consensus 75 ---~~~~g--~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 75 ---KSFEG--SWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp ---EEEEE--EEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhcEE--EEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 55555 445688754 3688888888887655555444433 2333334444444
No 22
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.15 E-value=1.2e-09 Score=80.31 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=95.3
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
+.++.++.|++|+++||+.+ |... +...+|+ ++|++. +|+.-.+.+| +.+++=...-..+=++..+|++.++++.
T Consensus 1 M~~~G~f~V~~p~e~Vw~~L~dpe~-~a~ciPG-~qs~e~-~g~e~~~~v~-l~ig~l~~~~~g~~~~~~v~~~~~~~~i 76 (146)
T COG3427 1 MDYEGTFRVAAPPEAVWEFLNDPEQ-VAACIPG-VQSVET-NGDEYTAKVK-LKIGPLKGTFSGRVRFVNVDEPPRSITI 76 (146)
T ss_pred CcccceEEecCCHHHHHHHhcCHHH-HHhhcCC-cceeee-cCCeEEEEEE-EeecceeEEEEEEEEEccccCCCcEEEE
Confidence 35788999999999999999 8887 7899998 999984 5662111111 1221111011234466777889998877
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYLQA 153 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l~~ 153 (159)
..-.|.. . .....++.+.+.|.+++ |++.|.+.-+-.+. ...-.+.++ .+.+++..++..|..+|.+
T Consensus 77 ~g~G~~~-~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 77 NGSGGGA-A--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred Eeecccc-c--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7655333 1 23445677888998775 99999998877654 234445555 5556778888888887754
No 23
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.14 E-value=2.1e-09 Score=77.78 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=78.2
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-C--CCCcEEEEEEecCC-ceeEEEEEEEEEecccceE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-G--GPGSIKKFTIVEGG-QVKYAKHKIEEEDKVNLKL 80 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g--~~GsvR~~~~~~g~-~~~~~kErl~~~D~~~~~~ 80 (159)
++.+++|+||+++||+.+ |..+ +|+|+|+ +.++++++.+ | .+|+.-.+.+..++ +..+ +-+++.+++.. .+
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w-~~~it~~~p~~-~f 76 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRW-TTEITEVEPPR-RF 76 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEE-EEEEEEEcCCC-eE
Confidence 468899999999999999 9998 8999997 7788887433 2 46888888877554 3334 44556666544 57
Q ss_pred EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431 81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK 123 (159)
Q Consensus 81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~ 123 (159)
+...+.|.+ ..... +..|.|.++ ||.++++.+|+..
T Consensus 77 ~~~~~~G~~----~~w~h--~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 77 VDEQVSGPF----RSWRH--THRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEEeccCCc----hhCEE--EEEEEECCC-ceEEEEEEEEeCC
Confidence 888777754 22333 345577755 7999999999994
No 24
>PRK10724 hypothetical protein; Provisional
Probab=99.08 E-value=9.1e-09 Score=77.04 Aligned_cols=133 Identities=11% Similarity=0.090 Sum_probs=89.9
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
.++.++.|++|++++|+++ |..+ .|+|+|. .+++++++-++. +.+..++.+-++-......|.. +++++ ++.+.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~~~ 90 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SILMQ 90 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEEEE
Confidence 6888999999999999999 9998 8999997 777777765432 3344455543332344445544 45544 68999
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
.++|++ +.... +++|.|.++++|.|++..+|+.... .....++ ...+.+..|.+++++-
T Consensus 91 ~~~GpF----~~l~g--~W~f~p~~~~~t~V~~~l~fef~s~--l~~~~~~~~~~~~~~~mv~AF~~R 150 (158)
T PRK10724 91 LVDGPF----KKLIG--GWKFTPLSQEACRIEFHLDFEFTNK--LIELAFGRVFKELASNMVQAFTVR 150 (158)
T ss_pred ecCCCh----hhccc--eEEEEECCCCCEEEEEEEEEEEchH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999964 33333 4566888777899999999997642 2222222 3445556677776653
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.96 E-value=5.3e-08 Score=71.11 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=78.9
Q ss_pred EEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC-ce-eEEEEEEEEEecccceEEEEEE
Q 031431 9 EETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG-QV-KYAKHKIEEEDKVNLKLKYSVI 85 (159)
Q Consensus 9 e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~-~~-~~~kErl~~~D~~~~~~~y~v~ 85 (159)
+++|++|+++||+.+ |..+ +-..+|+ +++++.+. +.-.+.+ +..-|. +. -..+=++..+|++++.. ..+-
T Consensus 2 s~~v~a~~~~vw~~l~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~---~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPEN-LARCIPG-VESIEKVG-DEYKGKV---KVKVGPIKGTFDGEVRITEIDPPESYT-LEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHH-HHHHSTT-EEEEEEEC-TEEEEEE---EEESCCCEEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred cEEecCCHHHHHHHhcCHHH-HHhhCCC-cEEeeecC-cEEEEEE---EEEeccEEEEEEEEEEEEEcCCCcceE-eeee
Confidence 689999999999999 9887 7899998 88988765 4111111 111111 00 12233566677777752 3433
Q ss_pred eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC-CCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 86 EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE-VEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 86 eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~-~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
..+.... ....+.+++...++++|.+.|+++++..+- .......++ .+.+....+++.|++.|
T Consensus 75 g~g~~~~---~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 75 GRGRGGG---SSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEECTCC---EEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccc---eEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333222 234445555665555699999999998765 344455555 44455566666666544
No 26
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.81 E-value=1.5e-07 Score=69.85 Aligned_cols=129 Identities=18% Similarity=0.142 Sum_probs=84.0
Q ss_pred cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEE
Q 031431 3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLK 81 (159)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 81 (159)
..++..++.|+||+++||+++ |+.+ ++.|.|. . ..+-.+|....+.+...+. .....++..+|+.++ +.
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~~~-l~ 79 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPER-LARWFAP-G------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPPRL-LA 79 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHHH-HHhhcCC-C------CCCcccCceEEEEecCCCC-CccceEEEEEcCCcE-EE
Confidence 457899999999999999999 9887 8999984 2 1222345555555543211 234567777877754 67
Q ss_pred EEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCC
Q 031431 82 YSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANP 155 (159)
Q Consensus 82 y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~ 155 (159)
|+...++ . ....+++|++.+ ++|.++...++.+... ......++-..++..|.+|+-+.+
T Consensus 80 ~~~~~~~-~------~~~~~~~l~~~~-~gT~v~~~~~~~~~~~------~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 80 FTWGEGG-G------ESEVRFELAPEG-DGTRLTLTHRLLDERF------GAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEecCCC-C------CceEEEEEEEcC-CCEEEEEEEeccCchh------hhhhhcccHHHHHHHHHHHHcCCC
Confidence 8765443 1 123456677764 5799988877765331 112223455778888888887765
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.73 E-value=3.5e-07 Score=65.85 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=76.9
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
+++.+++|+||+++||+++ |... +++|.|... .....|.+..|. +.+..+ ......-++..+++.++ +.|+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~-~~~~~~~~i~~~~p~~~-l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGY-EHGVFPVTVVEVDPPRR-FSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhh-hhhcccccC--CCcccCCcceeE---EecCCC-CccceEEEEEEeCCCcE-EEEE
Confidence 5789999999999999999 9887 899998632 111112222232 333221 11133456777777766 5777
Q ss_pred EEeccc---cCCCceeEEEEEEEEEECCCCCeEEEEEEE-EEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431 84 VIEGND---LADYKLEKISFEHQWRASPNGGSICKTICK-LHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 84 v~eg~~---l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~-~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
...... .+.-.......+++|.+.+ ++|.++++-. |...++... ........++-..++..|++||-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~-~~~~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERR-AEAYRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHH-HHHHHhhhhhHHHHHHHHHHHhc
Confidence 543320 0000011233566778875 5699999866 432221000 01122233455778888888874
No 28
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.67 E-value=2.7e-07 Score=69.95 Aligned_cols=107 Identities=14% Similarity=0.268 Sum_probs=82.6
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe--cCCceeEEEEEEEEEecccceE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV--EGGQVKYAKHKIEEEDKVNLKL 80 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~--~g~~~~~~kErl~~~D~~~~~~ 80 (159)
..++.+++|++|+|+||... |+.+ +|.||-+ +.|+++.+..- -+|+.. .|..++|--| |+ -|.++..|
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~-it-~d~~~e~I 140 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAE-IT-KDIPGERI 140 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeeh-hh-ccCCCcEE
Confidence 67899999999999999999 9999 8999985 99999876642 345544 3444444333 33 57788889
Q ss_pred EEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431 81 KYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE 125 (159)
Q Consensus 81 ~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~ 125 (159)
.+.=++|.-+++ . ..|.|.+.+++.|.|+.+.+|.+-++
T Consensus 141 ~W~Sl~Ga~v~N-s-----G~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 141 QWESLPGARVEN-S-----GAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred eeecCCCCcCCC-C-----ccEEeeeCCCCceEEEEEEEecCCcc
Confidence 999999976665 2 24567888777899999999988765
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.63 E-value=5.1e-06 Score=60.31 Aligned_cols=136 Identities=15% Similarity=0.123 Sum_probs=76.4
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCC-ceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPD-VVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~-~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
++.+..++||+++||+++ |... +.+|+.. .--.+...+.+-.+|..-.+.+. .++......=++.++|+.++ +.|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~~-l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDER-IVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCce-EEE
Confidence 667889999999999999 8776 6777743 11112223333233434333332 23332233446777887776 566
Q ss_pred EEE--eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431 83 SVI--EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 83 ~v~--eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+.. .++. .....+++++|.+.+ |+|.++.+-..-...+. +......++-..++..|+++|.
T Consensus 80 t~~~~~~~~----~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 80 TYTMHIGGT----LLSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEeeccCCc----cccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 643 2221 111234667778874 57988888665322211 1112223455778888888874
No 30
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.62 E-value=2.6e-06 Score=62.06 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=77.3
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-cCCceeEEEEEEEEEecccceEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-EGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
+++.+.+++||+++||+++ |... +.+|....--.+...+.|-.+|..-.+.+. +++....+.=++.++++.++ +.|
T Consensus 1 ~l~i~r~~~ap~e~Vw~a~Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~~-l~~ 78 (142)
T cd07826 1 EIVITREFDAPRELVFRAHTDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPER-IVQ 78 (142)
T ss_pred CEEEEEEECCCHHHHHHHhCCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEE
Confidence 3678899999999999999 8776 666665421122223344334444444443 23322233446777887766 455
Q ss_pred EEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhh
Q 031431 83 SVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQA 153 (159)
Q Consensus 83 ~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~ 153 (159)
+-. ++.. .. ....+++|.+.+ |+|.++.+..|.... ..+.... ...++-..++..|++||.+
T Consensus 79 t~~~~~~~-~~----~s~v~~~l~~~~-~gT~l~l~~~~~~~~---~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 142 (142)
T cd07826 79 TEEFEGLP-DG----VALETVTFTELG-GRTRLTATSRYPSKE---ARDGVLASGMEEGMEESYDRLDELLAS 142 (142)
T ss_pred EeEecCCC-CC----ceEEEEEEEECC-CCEEEEEEEEeCCHH---HHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 432 2221 11 234566778874 679999876653211 1011111 2334557788888888853
No 31
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.62 E-value=2.2e-06 Score=60.89 Aligned_cols=134 Identities=9% Similarity=0.026 Sum_probs=75.2
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
|++.++.|+|||++||+++ |... ++.|.+... ..++-.+|.--.+..... ....+.=++.++++.++ +.|+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~-~~~~~~~~v~~~~~~~~-l~~~ 72 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDD-GTVDVEGEVLESDPPRR-LVHT 72 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCchh-hhheecccc-----cccCCcCCCeEEEEeCCC-cccccceEEEEecCCCe-EEEE
Confidence 5788999999999999999 9887 899987622 123323343333333321 11123446666775554 6676
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
...+.....=.......++.|.+.++ +|.++.+.+-.+.+. .......+.-..+++.|.++|-
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~-----~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 73 WRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGS-----PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCch-----hHHHhhhcCHHHHHHHHHHHhc
Confidence 54322210001112345666788644 677776655432221 1222333455678888888763
No 32
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=1.8e-05 Score=57.65 Aligned_cols=134 Identities=11% Similarity=0.099 Sum_probs=72.7
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCc---ee--EEEEEcCCCCCCcEEEEEE-ecCCceeEEEEEEEEEecccc
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDV---VK--NVEVLEGNGGPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNL 78 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~---v~--s~~~~eG~g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~ 78 (159)
+..++.|+||+++||+++ |... +.+|++.. +. +.+...| |..+ +.+ .+++..-...=++.++|+.++
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~-~~~W~~p~~~~~~~~~~d~~~G----G~~~-~~~~~~~g~~~~~~g~v~~i~p~~~ 75 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPEL-LKQWFCPKPWTTEVAELDLRPG----GAFR-TVMRGPDGEEFPNPGCFLEVVPGER 75 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHH-HhccCCCCCccceEEEEEeecC----cEEE-EEEECCCCCEecceEEEEEEeCCCE
Confidence 567899999999999999 8776 56665421 21 2333223 3333 333 233322223456788888877
Q ss_pred eEEEE--EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431 79 KLKYS--VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 79 ~~~y~--v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~ 152 (159)
+.|+ +.++..... .. ....+++|++. +++|.++.+..+.... ..+.... ...++-..++..|++||.
T Consensus 76 -l~~t~~~~~~~~~~~-~~-~~~v~~~~~~~-~~gT~Ltl~~~~~~~~---~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 76 -LVFTDALTPGWRPAE-KP-FMTAIITFEDE-GGGTRYTARARHWTEA---DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred -EEEEEeecCCcCCCC-CC-cEEEEEEEEec-CCcEEEEEEEEeCCHH---HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 4565 322211111 11 13456677886 4579988764432110 0011111 113455778888888875
No 33
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.55 E-value=4.3e-06 Score=60.50 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=74.2
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCccccc-CCceeEEEEEcCCCCCCcEEEEEE-ecCCceeEEEEEEEEEecccceEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIF-PDVVKNVEVLEGNGGPGSIKKFTI-VEGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~-P~~v~s~~~~eG~g~~GsvR~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
++.++.|+||+++||+++ |... +.+|+ |..+.. ...+.+..+|..-.+.+ .+++..-...=++.++++.++ +.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~~-l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPER-IVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCCE-EEE
Confidence 677899999999999999 8776 67775 432321 11223323344333333 223321122346777888776 677
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHh
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~ 152 (159)
+...++ . . .+.+++|.|.+ ++|.++.+-.|..... . ...+. ...+.-..++..|++||.
T Consensus 79 t~~~~~---~-~---~~v~~~~~~~~-~gT~ltl~~~~~~~~~--~-~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSGP---P-R---FRLTVTFEEQG-GKTRLTWRQVFPTAAE--R-CEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccCC---C-c---EEEEEEEEECC-CCEEEEEEEEcCCHHH--H-HHHHHhCHHHHHHHHHHHHHHHHh
Confidence 764331 1 1 23566778865 6899988865422110 0 01111 122344677788887764
No 34
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.55 E-value=1.2e-05 Score=58.65 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=76.8
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccC-CceeEEEEEcCCCCCCcEEEEE--Eec------CCceeEEEEEEEEEe
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFP-DVVKNVEVLEGNGGPGSIKKFT--IVE------GGQVKYAKHKIEEED 74 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P-~~v~s~~~~eG~g~~GsvR~~~--~~~------g~~~~~~kErl~~~D 74 (159)
+++.++.|+||+++||+++ |... +.+|.+ ..+. +.....+-.+|..-.+. +.. .+......=++.+++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~~~-~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDPDA-LAKWLPPDGMT-GTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCHHH-HhhcCCCCCeE-eEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 4678899999999999999 8887 677765 3222 22222332233332232 222 111123344678888
Q ss_pred cccceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431 75 KVNLKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 75 ~~~~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+.++ +.|+..-.+. .... ..+++++|++.+ ++|.++++...-+.. .... ...+.-..++..|++||.
T Consensus 79 p~~~-i~~~~~~~~~--~~~~-~~~v~~~~~~~~-~~T~lt~~~~~~~~~---~~~~---~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 79 PNER-IVYTDVFDDP--SLSG-EMTMTWTLSPVS-GGTDVTIVQSGIPDG---IPPE---DCELGWQESLANLAALVE 145 (146)
T ss_pred CCCE-EEEEEEecCC--CCCc-eEEEEEEEEecC-CCEEEEEEEeCCCch---hhhh---HHHHHHHHHHHHHHHHhc
Confidence 8876 5676432221 1111 234667778874 579999887642221 1112 233466778888888874
No 35
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.53 E-value=3.6e-06 Score=60.48 Aligned_cols=127 Identities=14% Similarity=0.207 Sum_probs=73.2
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeE--EEEEcCCCCCCcEEEEEEe-cCCc-eeEEEEEEEEEecccce
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKN--VEVLEGNGGPGSIKKFTIV-EGGQ-VKYAKHKIEEEDKVNLK 79 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s--~~~~eG~g~~GsvR~~~~~-~g~~-~~~~kErl~~~D~~~~~ 79 (159)
|++.++.++||+++||+++ |... +.+|++. ... +...+.|-.+|..-.+.+. .++. ...+.=++.++++.++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~- 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKL- 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCE-
Confidence 5788999999999999999 8776 7888542 111 1111233234444333332 2221 1123345667777766
Q ss_pred EEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHh
Q 031431 80 LKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 80 ~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~ 152 (159)
+.|+..++ .+.+++|+|.+ ++|.++-+ +.+... ...+.+ .++-..++..|++||.
T Consensus 78 l~~~~~~~----------~~v~~~l~~~~-~gT~l~l~--~~~~~~--~~~~~~---~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 IEYTMEDG----------REVEVEFTEEG-DGTKVVET--FDAENE--NPVEMQ---RQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEcCCC----------CEEEEEEEECC-CCEEEEEE--ECCCCC--CcHHHH---HHHHHHHHHHHHHHhh
Confidence 67875321 13466778864 57888865 443321 112222 2455778888888874
No 36
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.47 E-value=4.8e-05 Score=57.91 Aligned_cols=144 Identities=10% Similarity=0.113 Sum_probs=84.6
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCc---eeEEEEEEEEEecccce
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQ---VKYAKHKIEEEDKVNLK 79 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~---~~~~kErl~~~D~~~~~ 79 (159)
..+..+.+|++||+++|+++ |... .|+|.|. +.++++++-.+.--.+-.+.+....+ -.++-.+-...+..+..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 56788899999999999999 9887 7999996 88999887664312233333332211 12222221222222333
Q ss_pred EEEEEEeccc----cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 80 LKYSVIEGND----LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 80 ~~y~v~eg~~----l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
+...+..++. -..| +.......+.++|.++++|.+++...+++.+. .|.-.++ ..+.....++++|.+.+
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~--iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS--IPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333321 1111 11222234556888777899999999998763 4445555 44455567777777643
No 37
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.43 E-value=2e-05 Score=57.65 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=71.5
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCccccc-CCce------eEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEeccc
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIF-PDVV------KNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVN 77 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~-P~~v------~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~ 77 (159)
++.++.|+||+++||+++ | . +.+|. |... ..|++.-..| |..+ +... ++. ....=++.++++.+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~-~g~-~~~~g~v~~v~p~~ 73 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGE-DGT-ECEWGTVLAWEPPS 73 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-EecC-CCc-EeceEEEEEEcCCC
Confidence 678999999999999999 8 2 55554 4311 2233211112 3333 2222 222 22344677788877
Q ss_pred ceEEEEEE-eccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHH-HhHHHHHHHHHHHHHHHHh
Q 031431 78 LKLKYSVI-EGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQA-KAGKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 78 ~~~~y~v~-eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~-~~~~~~~~~~~k~le~~l~ 152 (159)
+ +.|+-. ..+.... .....+.+++|++.++++|.++.+-..-......-.+... ....++-..++..|+++|-
T Consensus 74 ~-l~~tw~~~~~~~~~-~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 74 R-LVFTWQINADWRPD-PDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred E-EEEEeccCCCcCcC-CCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 7 566643 2111100 1112356777898764689988877764332100011111 1112244567788877763
No 38
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=0.00013 Score=53.86 Aligned_cols=138 Identities=19% Similarity=0.174 Sum_probs=71.2
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEE
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKY 82 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 82 (159)
.+++.+..|++|+++||+++ |... +.+|+..--.+.++.-|. +....+....| +.....-++.++++..| |.|
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~r-Iv~ 81 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPER-IVF 81 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCcE-EEE
Confidence 67899999999999999999 8775 788776211111111221 22223333333 22345556777877777 455
Q ss_pred EEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh--HHHHHHHHHHHHHHHHh
Q 031431 83 SVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA--GKERVLGVVKGVEAYLQ 152 (159)
Q Consensus 83 ~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~--~~~~~~~~~k~le~~l~ 152 (159)
+-.-.+.-.. +.....+++|++..+|+ +++..........+.....+. ..+.-..++..++++|.
T Consensus 82 tw~~~~~~~~--~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 82 TWDFDEDGEP--FLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EeccCCCCCc--ccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 5443322111 01123455667765553 222222222221111111111 14566778888887764
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.10 E-value=0.0001 Score=51.39 Aligned_cols=121 Identities=14% Similarity=0.227 Sum_probs=67.8
Q ss_pred cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEEEeccccC
Q 031431 13 AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIEGNDLA 91 (159)
Q Consensus 13 ~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v~eg~~l~ 91 (159)
+||+++||+++ +... +.+|.+......+. .+|..-.+ ...++..-...=++.++++.++ +.|+.--++.-.
T Consensus 1 ~ap~e~Vw~a~t~~~~-~~~W~~~~~~~~~~-----~~Gg~~~~-~~~~g~~~~~~~~v~~~~p~~~-i~~~~~~~~~~~ 72 (124)
T PF08327_consen 1 DAPPERVWEALTDPEG-LAQWFTTSEAEMDF-----RPGGSFRF-MDPDGGEFGFDGTVLEVEPPER-IVFTWRMPDDPD 72 (124)
T ss_dssp SSSHHHHHHHHHSHHH-HHHHSEEEEEEEEC-----STTEEEEE-EETTSEEEEEEEEEEEEETTTE-EEEEEEEETSSS
T ss_pred CcCHHHHHHHHCCHhH-HhhccCCCcceeee-----ecCCEEEE-EecCCCCceeeEEEEEEeCCEE-EEEEEEccCCCC
Confidence 69999999999 8775 78893211222222 33433333 2244432233335788888877 677744333211
Q ss_pred CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHh-HHHHHHHHHHHHHHHH
Q 031431 92 DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKA-GKERVLGVVKGVEAYL 151 (159)
Q Consensus 92 ~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~-~~~~~~~~~k~le~~l 151 (159)
......++.|.+ .+++|.++.+.+=.+ +...... ...+-..++..|.+||
T Consensus 73 ---~~~~~v~~~~~~-~~~~T~l~~~~~~~~------~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 73 ---GPESRVTFEFEE-EGGGTRLTLTHSGFP------DDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp ---CEEEEEEEEEEE-ETTEEEEEEEEEEEH------SHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEEEEE-cCCcEEEEEEEEcCC------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 223456777788 456788877762221 1222222 3445577778888776
No 40
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.02 E-value=0.00013 Score=51.95 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=68.3
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
+++.++.|+||+++||+++ |... +.+|+.. ..+.+...| |..+ +..|. +.=++.++++.++ +.|+
T Consensus 1 ~i~~~r~i~ap~e~Vw~A~T~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g~----~~g~~~~i~p~~~-l~~~ 66 (126)
T cd08892 1 TISLTETFQVPAEELYEALTDEER-VQAFTRS-PAKVDAKVG----GKFS---LFGGN----ITGEFVELVPGKK-IVQK 66 (126)
T ss_pred CeEEEEEECCCHHHHHHHHCCHHH-HHhhcCC-CceecCCCC----CEEE---EeCCc----eEEEEEEEcCCCE-EEEE
Confidence 3678899999999999999 8775 6777753 334443333 3333 22331 2335677877666 4555
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHH-HHHHHHHHHH
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVL-GVVKGVEAYL 151 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~-~~~k~le~~l 151 (159)
-.-.+. +. . ...+.+++|++. +++|.++.+-...+.. ..+.+. +.-. .++..|.++|
T Consensus 67 w~~~~~-~~-~-~~s~v~~~l~~~-~~gT~ltl~~~g~~~~----~~~~~~---~GW~~~~~~~l~~~~ 124 (126)
T cd08892 67 WRFKSW-PE-G-HYSTVTLTFTEK-DDETELKLTQTGVPAG----EEERTR---EGWERYYFESIKQTF 124 (126)
T ss_pred EEcCCC-CC-C-CcEEEEEEEEEC-CCCEEEEEEEECCCCc----hHHHHH---hhHHHHHHHHHHHHh
Confidence 431111 11 1 123467777886 4578877765544321 112222 2333 3667776665
No 41
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.93 E-value=0.00022 Score=51.39 Aligned_cols=127 Identities=15% Similarity=0.160 Sum_probs=72.1
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSV 84 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v 84 (159)
++.++.|+||+++||+++ |... +.+|.+. -.+.++..| |.+ .+.+...++ .+.=++.++++.++ +.|+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~-l~~W~~~-~~~~~~~~G----g~~-~~~~~~~~~--~~~g~~~~~~p~~~-l~~~w 71 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEI-TTKFWFT-GSSGRLEEG----KTV-TWDWEMYGA--SVPVNVLEIEPNKR-IVIEW 71 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHH-hcccccc-CCCccccCC----CEE-EEEEEccCC--ceEEEEEEEcCCCE-EEEEe
Confidence 568899999999999999 8776 6775443 223333223 333 345543222 12236677776655 67775
Q ss_pred EeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH---hHHHHHHHHHHHHHHHHhh
Q 031431 85 IEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK---AGKERVLGVVKGVEAYLQA 153 (159)
Q Consensus 85 ~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~---~~~~~~~~~~k~le~~l~~ 153 (159)
..++ . . ..++++|.+.++|+|.++.+-..-+.. .++..+ ....+-..++..|++||..
T Consensus 72 ~~~~---~-~---s~v~~~l~~~~~ggT~ltl~~~~~~~~----~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 72 GDPG---E-P---TTVEWTFEELDDGRTFVTITESGFPGT----DDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred cCCC---C-C---EEEEEEEEECCCCcEEEEEEECCCCCC----cHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 4321 1 1 235677788754678887774432211 111111 1123446778888888765
No 42
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=97.92 E-value=0.00032 Score=51.63 Aligned_cols=111 Identities=14% Similarity=0.142 Sum_probs=77.7
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEE
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYS 83 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 83 (159)
+++.+.-++.||+++++++ |-.. -|+.+|. ..+..+.+.++. .-+-.++.+=.+--.+..-|.. +++..++|--+
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~-C~~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~~ 78 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVES-YPEFLPW-CSASRVLERNER-ELIAELDVGFKGIRETFTTRVT-LKPTARSIDMK 78 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHh-Cchhccc-cccceEeccCcc-eeEEEEEEEhhheeeeeeeeee-ecCchhhhhhh
Confidence 5788999999999999999 9887 8999996 666677777632 2444444432221234444544 56666678888
Q ss_pred EEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431 84 VIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE 125 (159)
Q Consensus 84 v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~ 125 (159)
+++|+. +.- ...++++|-++++|.|+...+|+...-
T Consensus 79 l~~GPF----k~L--~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 79 LIDGPF----KYL--KGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhcCCh----hhh--cCceEEEECCCCceEEEEEEEeeehhH
Confidence 888987 111 125567997677999999999999753
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.51 E-value=0.0011 Score=47.80 Aligned_cols=120 Identities=16% Similarity=0.238 Sum_probs=63.3
Q ss_pred EcCCHHHHHhhh-cCCCCcccc-cCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccce-EEEEEEecc
Q 031431 12 YAVPPARMFNAL-ASDNLPSKI-FPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLK-LKYSVIEGN 88 (159)
Q Consensus 12 i~apa~~vW~~~-d~~~~lp~~-~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~-~~y~v~eg~ 88 (159)
++||+++||+++ |... +.+| .+. ...++...| |..+.+ .+. +.=++.++|+.+|. ++++..+.+
T Consensus 1 f~ap~e~Vw~A~Tdp~~-l~~w~~~~-~~~~d~~~G----G~f~~~---~~~----~~G~~~ev~pp~rlv~tw~~~~~~ 67 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYT-LTRLSLGS-PAEMDAKVG----GKFSLF---NGS----VEGEFTELEKPKKIVQKWRFRDWE 67 (132)
T ss_pred CCCCHHHHHHHHcCHHH-HHHHhcCC-CccccCCcC----CEEEEe---cCc----eEEEEEEEcCCCEEEEEEecCCCC
Confidence 479999999999 8775 6777 432 222332222 333332 221 22366778888772 344442211
Q ss_pred ccCCCceeEEEEEEEEEECCCCCeEEEEEEE-EEEcCC--CCCCHHHHHhHHHHHHH-HHHHHHHHHh
Q 031431 89 DLADYKLEKISFEHQWRASPNGGSICKTICK-LHAKGE--VEVTEEQAKAGKERVLG-VVKGVEAYLQ 152 (159)
Q Consensus 89 ~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~-~e~~~~--~~~~~~~~~~~~~~~~~-~~k~le~~l~ 152 (159)
. ..+ .+.+++|.+.++|+|.++.+-. +..... .....+.+. ++-.. ++..|++||.
T Consensus 68 ~-~~~----s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~---~GW~~~~ld~L~~~l~ 127 (132)
T PTZ00220 68 E-DVY----SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCR---NGWTQNFLDRFEKILG 127 (132)
T ss_pred C-CCc----eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHH---hChHHHHHHHHHHHhC
Confidence 1 111 2456677887666888888876 422211 101122222 24344 5888887763
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.37 E-value=0.023 Score=44.27 Aligned_cols=124 Identities=7% Similarity=-0.017 Sum_probs=72.8
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEe-c--C--CceeEEEEEEEEEecccc
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIV-E--G--GQVKYAKHKIEEEDKVNL 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~-~--g--~~~~~~kErl~~~D~~~~ 78 (159)
.+..+.++++|++++|+++ |..+ .++|.+ .++++++++--+.--.|-.+.+. + . .+-.++.-+....+....
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDPRT-RFLYDT-MIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCcch-hhhhHH-hhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 3567889999999999999 9997 799999 59999998754321233333332 1 2 111233333222223332
Q ss_pred eEEEEEEeccc---cC-C-CceeEEEEEEEEEEC---CCCCeEEEEEEEEEEcCCCCCCH
Q 031431 79 KLKYSVIEGND---LA-D-YKLEKISFEHQWRAS---PNGGSICKTICKLHAKGEVEVTE 130 (159)
Q Consensus 79 ~~~y~v~eg~~---l~-~-Y~~~~~~~~~~~~p~---~~g~t~v~W~~~~e~~~~~~~~~ 130 (159)
.+.-+-+.-+. .+ + .+.......+.++|. ++|.|.++..+..+|.++..|+-
T Consensus 124 vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~ 183 (205)
T cd08874 124 VVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQ 183 (205)
T ss_pred EEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHH
Confidence 22222111111 11 1 234444556667887 66789999999999986544433
No 45
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.12 E-value=0.048 Score=42.35 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=79.6
Q ss_pred EEEEEEEEcCCHHHHH-hhh-cCCCCcccccCCceeEEEEEcCCCC-CCcEEEEEEec-CCc---eeEEEEEEEEEeccc
Q 031431 5 TYESEETYAVPPARMF-NAL-ASDNLPSKIFPDVVKNVEVLEGNGG-PGSIKKFTIVE-GGQ---VKYAKHKIEEEDKVN 77 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW-~~~-d~~~~lp~~~P~~v~s~~~~eG~g~-~GsvR~~~~~~-g~~---~~~~kErl~~~D~~~ 77 (159)
-+..+.++++|+++++ .++ |..+ .++|.+. +.++++++--+. .=-++.++... ++. -.++.-|...-++.+
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 3667889999999999 666 7776 7999996 778777655321 11123322221 111 122222322233333
Q ss_pred ceEEEEEEecccc---CCC-ceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 78 LKLKYSVIEGNDL---ADY-KLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 78 ~~~~y~v~eg~~l---~~Y-~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
..+.....+-+.+ ++| +.......+.++|.++ ++|.++|.+-.+|.+. .|.-.+. .+.+.....++.|.++
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~~ 205 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQR 205 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHHH
Confidence 2221111222211 111 2223334555788765 7899999999999886 3444444 4355556777777776
Q ss_pred Hh
Q 031431 151 LQ 152 (159)
Q Consensus 151 l~ 152 (159)
+.
T Consensus 206 ~~ 207 (209)
T cd08905 206 MA 207 (209)
T ss_pred Hh
Confidence 65
No 46
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.08 E-value=0.1 Score=41.52 Aligned_cols=147 Identities=11% Similarity=0.051 Sum_probs=82.3
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEEec---CCceeEEEEEEEE--Eecc
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIVE---GGQVKYAKHKIEE--EDKV 76 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~---g~~~~~~kErl~~--~D~~ 76 (159)
..+..+..+++|++++|+++ |... .++|.+. +.++++++--+ ..+-++ +.+.. -.+-..+-.+-.. .+..
T Consensus 77 l~fk~e~~vd~s~~~v~dlL~D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~~ 153 (235)
T cd08873 77 LSFCVELKVQTCASDAFDLLSDPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATDG 153 (235)
T ss_pred eEEEEEEEecCCHHHHHHHHhCcch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCCC
Confidence 35788889999999999999 9997 8999995 88999887432 223233 33332 1111233322222 2222
Q ss_pred c-ceEEEEEEe--cc-ccCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHH
Q 031431 77 N-LKLKYSVIE--GN-DLADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYL 151 (159)
Q Consensus 77 ~-~~~~y~v~e--g~-~l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l 151 (159)
. ..+...-+. .- +-++| +.......+.+.|.++++|.|+.....+|.--. .-...+...-......++..++||
T Consensus 154 ~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 154 DPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLS-YVTCNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred CeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccc-eeeecchhhhHHHHHHHHHHHHHh
Confidence 2 222222222 11 11222 233444566778988889999999888883210 000111111124456777888888
Q ss_pred hhC
Q 031431 152 QAN 154 (159)
Q Consensus 152 ~~~ 154 (159)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 764
No 47
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.96 E-value=0.11 Score=41.59 Aligned_cols=144 Identities=11% Similarity=0.073 Sum_probs=76.4
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC-Cc---eeEEEEEEEEEecccc-
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-GQ---VKYAKHKIEEEDKVNL- 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~~- 78 (159)
.+..+..+++|++++++++ |... .++|.++ +.++++++--+.--.+..++..+- ++ -.++-.+-..-+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~~-r~~Wd~~-~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~ 159 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLRR-RPEWDKH-YRSCELVQQVDEDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGD 159 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhh-hhhhHhh-ccEEEEEEecCCCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCc
Confidence 4667889999999999999 9997 8999996 888888865432112555543332 11 1222221111211221
Q ss_pred --eEEEEEEe-ccc--cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHH-HHHHHHHHHH
Q 031431 79 --KLKYSVIE-GND--LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERV-LGVVKGVEAY 150 (159)
Q Consensus 79 --~~~y~v~e-g~~--l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~-~~~~k~le~~ 150 (159)
.+....+. .+. .++| +.......+.+.|.++++|.+++...-+| +. .|.-..+ .+.+.. ...+.+-..+
T Consensus 160 ~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G~-LP~~~~N~~~~~~p~~~~~~~~~~~ 236 (240)
T cd08913 160 PYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--GV-LPYISTDIAGLSSEFYSTFSACSQF 236 (240)
T ss_pred cEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--cc-ccHHHhhhhhhccchhHHHHHHHHH
Confidence 12222222 221 1222 23334445666888778899988665555 33 3322222 222222 3455555556
Q ss_pred Hhh
Q 031431 151 LQA 153 (159)
Q Consensus 151 l~~ 153 (159)
|..
T Consensus 237 ~~~ 239 (240)
T cd08913 237 LLD 239 (240)
T ss_pred hhc
Confidence 554
No 48
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.74 E-value=0.18 Score=39.08 Aligned_cols=143 Identities=9% Similarity=0.057 Sum_probs=77.0
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCC-CcccccCCceeEEEEEcCCC-CCCcEEEEEEe-c-C---CceeEEEEE-EEEEecc
Q 031431 6 YESEETYAVPPARMFNAL-ASDN-LPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIV-E-G---GQVKYAKHK-IEEEDKV 76 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~-~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~-~-g---~~~~~~kEr-l~~~D~~ 76 (159)
+..+..++++++++++.+ |..+ .-++|.+. +.++++++--+ ...-++. ... + + .+-..+--| ....++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 678889999999999999 8754 22799995 88888876643 2222232 222 1 1 111222222 2223333
Q ss_pred cceEEEEEEeccc---cCCCcee-E--EEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431 77 NLKLKYSVIEGND---LADYKLE-K--ISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA 149 (159)
Q Consensus 77 ~~~~~y~v~eg~~---l~~Y~~~-~--~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 149 (159)
...+.+..++-+. .++|-.- . .-.-++.+|.++++|.++|.+-.+|.+. .|...+. ...+....+++.|.+
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~--iP~~lvn~~~~~~~~~~~~~Lr~ 203 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY--LPQTVVDSFFPASMAEFYNNLTK 203 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC--cCHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333321 1222111 1 1123333454556899999999999875 3344443 333555677777776
Q ss_pred HHh
Q 031431 150 YLQ 152 (159)
Q Consensus 150 ~l~ 152 (159)
++.
T Consensus 204 ~~~ 206 (208)
T cd08903 204 AVK 206 (208)
T ss_pred HHh
Confidence 653
No 49
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.55 E-value=0.26 Score=38.38 Aligned_cols=147 Identities=9% Similarity=0.042 Sum_probs=77.9
Q ss_pred EEEEEEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC---ceeEEEEEEEEEecccce
Q 031431 5 TYESEETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG---QVKYAKHKIEEEDKVNLK 79 (159)
Q Consensus 5 ~~~~e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~---~~~~~kErl~~~D~~~~~ 79 (159)
.+..+.++ ++|++.+++++ |... .++|.|. +..+++++.-+.--.|....+..-- +-.++--|...-++....
T Consensus 48 ~~k~~~~~~~~s~e~~~~~l~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~v 125 (222)
T cd08871 48 MIKVSAIFPDVPAETLYDVLHDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYI 125 (222)
T ss_pred EEEEEEEeCCCCHHHHHHHHHChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEE
Confidence 35566666 79999999999 8765 7899996 6666666543221233333333111 112222232222232212
Q ss_pred EEEEEEecccc---CCCc-eeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHHhhC
Q 031431 80 LKYSVIEGNDL---ADYK-LEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYLQAN 154 (159)
Q Consensus 80 ~~y~v~eg~~l---~~Y~-~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l~~~ 154 (159)
+...-++-+.. ..|- .......+.++|.++++|.++|.+..++.+. .|.-.+. .++.....+++.|...+.+-
T Consensus 126 i~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 126 IFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred EEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11111111111 1111 1112233456787777899999988888875 3444434 44455567777777666553
Q ss_pred C
Q 031431 155 P 155 (159)
Q Consensus 155 ~ 155 (159)
+
T Consensus 204 ~ 204 (222)
T cd08871 204 P 204 (222)
T ss_pred H
Confidence 3
No 50
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.55 E-value=0.24 Score=38.12 Aligned_cols=144 Identities=12% Similarity=0.084 Sum_probs=76.7
Q ss_pred EEEEEEEcCCHHHHHhh-h-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEEEEecC-Cc---eeEEEEEEEEEecccc
Q 031431 6 YESEETYAVPPARMFNA-L-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKFTIVEG-GQ---VKYAKHKIEEEDKVNL 78 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~-~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~~~~~g-~~---~~~~kErl~~~D~~~~ 78 (159)
+..+..+++|+++++.. + |... .++|.+. +..+++++.-+ ..--+...+..+. .+ -.++--|-...++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 66788999999999864 5 7776 7999996 77777665542 2111222222221 11 1222222222333222
Q ss_pred eEEEEEEeccc---cCCC-ceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 79 KLKYSVIEGND---LADY-KLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 79 ~~~y~v~eg~~---l~~Y-~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
.+...-++-+. .++| +.......+.++|.++ ++|.++|.+..+|.|..+ .-... .+......+++.|..++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP--~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLP--QYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCc--ceeeehhhHHHHHHHHHHHHHHH
Confidence 22222222111 1111 1111223445677654 579999999999987533 22222 34556677888888877
Q ss_pred hh
Q 031431 152 QA 153 (159)
Q Consensus 152 ~~ 153 (159)
.+
T Consensus 206 ~~ 207 (208)
T cd08868 206 AT 207 (208)
T ss_pred hh
Confidence 53
No 51
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.52 E-value=0.2 Score=36.85 Aligned_cols=63 Identities=14% Similarity=0.280 Sum_probs=45.5
Q ss_pred CHHHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEecccceEEEEEEe
Q 031431 15 PPARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDKVNLKLKYSVIE 86 (159)
Q Consensus 15 pa~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~v~e 86 (159)
..+++|.-+ ...+ -....|+ +.+|++++.++. --.|.++|++. .++|++. +++..+ +.|.+-.
T Consensus 18 Tr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~~~~-v~f~~~~ 82 (141)
T cd08863 18 TRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEPPSR-VHFLQAD 82 (141)
T ss_pred CHHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecCCcE-EEEEecC
Confidence 356999988 4443 2346775 899999988753 45699999875 7999977 555555 5787765
No 52
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=96.51 E-value=0.27 Score=38.22 Aligned_cols=144 Identities=10% Similarity=0.042 Sum_probs=77.4
Q ss_pred EEEEEEEEEcCCHHHHH-hhh-cCCCCcccccCCceeEEEEEcCCCCCCc-EEEEEEec-CCce---eEEEEEEEEEecc
Q 031431 4 VTYESEETYAVPPARMF-NAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-IKKFTIVE-GGQV---KYAKHKIEEEDKV 76 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW-~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~-g~~~---~~~kErl~~~D~~ 76 (159)
..+..+.++++|++++| .++ |..+ .++|.+. +.++++++--+.-=. ++.++... +++. .++--|-..-+..
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 34678889999999998 577 9887 8999996 888888755431111 12222221 1121 2333333322333
Q ss_pred cc-eEEEEEEecccc---CCCceeE-EEEEEEEEE--CCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHH
Q 031431 77 NL-KLKYSVIEGNDL---ADYKLEK-ISFEHQWRA--SPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVE 148 (159)
Q Consensus 77 ~~-~~~y~v~eg~~l---~~Y~~~~-~~~~~~~~p--~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le 148 (159)
.. .+..++. -+.+ ++|-.-. ...-+-+.| .++++|.++|.+..+|.|. .|.-.+. .+.+....+++.|.
T Consensus 127 ~~i~~~~sv~-~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 127 RYVSAGISTT-HSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LPRYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred cEEEEEEEEe-cCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 32 1222222 2211 2221111 111122344 3456899999999999985 3333333 44555567777777
Q ss_pred HHHh
Q 031431 149 AYLQ 152 (159)
Q Consensus 149 ~~l~ 152 (159)
+++.
T Consensus 204 ~~~~ 207 (209)
T cd08906 204 QRIR 207 (209)
T ss_pred HHHh
Confidence 6663
No 53
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.49 E-value=0.22 Score=36.87 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=79.0
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCce---eEEEEEEEEEecccc-
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQV---KYAKHKIEEEDKVNL- 78 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~---~~~kErl~~~D~~~~- 78 (159)
..+..+.++++|++++|+++ |... .++|-|. +.++++++-.+..-.+....+....+. ..+--+-...++++.
T Consensus 39 ~~~k~~~~i~~~~~~v~~~l~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 39 KLLKAEGVIPASPEQVFELLMDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred eeEEEEEEECCCHHHHHHHHhCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 34677889999999999999 8765 7899995 888888876533234444445433211 122112122233222
Q ss_pred eEEEEEEeccc---cCCCc-eeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 79 KLKYSVIEGND---LADYK-LEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 79 ~~~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
.+...=++.+. ...|. .......+.++|.++++|.+++.+..++.+.. |.-.+. .+++.+..+.+.+..+
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHHh
Confidence 11111122211 11211 11112234567877788999999999998753 333333 4444555666655543
No 54
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.16 E-value=0.35 Score=35.86 Aligned_cols=68 Identities=18% Similarity=0.377 Sum_probs=40.3
Q ss_pred EEEEEEEcCCH--------HHHHhhh--cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCCceeEEEEEEEEEec
Q 031431 6 YESEETYAVPP--------ARMFNAL--ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGGQVKYAKHKIEEEDK 75 (159)
Q Consensus 6 ~~~e~~i~apa--------~~vW~~~--d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~~~~~~kErl~~~D~ 75 (159)
++..+.||-|. +++|+-+ ...+ -..+.|+ +.+|++++.. +..-.|.++| |+ ..++|++. +.+
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~-~~~~~R~v~f--g~--~~v~E~v~-~~~ 73 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVPG-IDSCEVLSES-DTVLTREVTF--GG--ATVRERVT-LYP 73 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-TT---EEEEEEE--SSEEEEEEEE--TT--EEEEEEEE-EET
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCccc-cCeEEEEecC-CCeEEEEEEE--CC--cEEEEEEE-EeC
Confidence 45566665554 5799998 3333 3357785 9999999776 3467799999 33 48999977 555
Q ss_pred ccceEEE
Q 031431 76 VNLKLKY 82 (159)
Q Consensus 76 ~~~~~~y 82 (159)
..+ +.|
T Consensus 74 ~~~-V~f 79 (149)
T PF08982_consen 74 PER-VDF 79 (149)
T ss_dssp TTE-EEE
T ss_pred CcE-EEE
Confidence 554 566
No 55
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.15 E-value=0.44 Score=36.88 Aligned_cols=146 Identities=7% Similarity=0.045 Sum_probs=80.9
Q ss_pred cEEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec---CCceeEE-E-EEEEEEecc
Q 031431 3 VVTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE---GGQVKYA-K-HKIEEEDKV 76 (159)
Q Consensus 3 ~~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~-k-Erl~~~D~~ 76 (159)
...+..+.+|++|++++.+++ |.. +.++|.|. ..+.+.++..+..-.+-.+.+.. ...-..+ . -.++.+++
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~- 121 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEE- 121 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhh-hHhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeecc-
Confidence 356788899999999999999 876 58999997 45555554432212222222211 1110111 1 11222322
Q ss_pred cceEEE--EEEecc----------c--cC--CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHH
Q 031431 77 NLKLKY--SVIEGN----------D--LA--DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKER 139 (159)
Q Consensus 77 ~~~~~y--~v~eg~----------~--l~--~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~ 139 (159)
+..+.. .-+..+ + .+ ..+.......+.++|.++++|.+++.+..+|.+.- .|.-.+. .+++.
T Consensus 122 ~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k~~ 200 (215)
T cd08877 122 NGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVARKF 200 (215)
T ss_pred CCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHHHH
Confidence 332221 111100 0 11 11223334455678888889999999988887652 3344444 66777
Q ss_pred HHHHHHHHHHHHh
Q 031431 140 VLGVVKGVEAYLQ 152 (159)
Q Consensus 140 ~~~~~k~le~~l~ 152 (159)
+..+++.|.+-+.
T Consensus 201 ~~~~~~~l~k~~~ 213 (215)
T cd08877 201 AGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888876543
No 56
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.60 E-value=0.91 Score=36.22 Aligned_cols=116 Identities=13% Similarity=0.006 Sum_probs=67.5
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec--CCce-eEEEEEEEEEec-cc-
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE--GGQV-KYAKHKIEEEDK-VN- 77 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~--g~~~-~~~kErl~~~D~-~~- 77 (159)
..+..+.++++|++++++++ |... .++|.++ +.++++++--+.---|..++-.+ ..+. ..+..+-..... .+
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~-r~~Wd~~-~~e~~vI~qld~~~~vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTK-RPLWDPH-FLSCEVIDWVSEDDQIYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhh-hchhHHh-hceEEEEEEeCCCcCEEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 46788889999999999999 9998 8999996 88888876543211266655332 1111 222222111112 22
Q ss_pred -ceE-EEEEEecc--ccCCCc-eeE-EEEEEEEEECCCCCeEEEEEEEEEE
Q 031431 78 -LKL-KYSVIEGN--DLADYK-LEK-ISFEHQWRASPNGGSICKTICKLHA 122 (159)
Q Consensus 78 -~~~-~y~v~eg~--~l~~Y~-~~~-~~~~~~~~p~~~g~t~v~W~~~~e~ 122 (159)
..+ ..++-.-- +.++|- ... .+.. .++|.++++|.++..+.-+|
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 211 12222201 122332 222 2222 56888888999999998888
No 57
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=95.14 E-value=1.1 Score=34.38 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=66.8
Q ss_pred EEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec---CCceeEEEEEEEEEecccc--
Q 031431 5 TYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE---GGQVKYAKHKIEEEDKVNL-- 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~---g~~~~~~kErl~~~D~~~~-- 78 (159)
-+..+.+++++++++++.+ |.. ++|.+. +.++++++--+.-=.|-...+.. ..+-.++--|....+.++.
T Consensus 45 ~~K~~~~v~a~~~~v~~~l~d~r---~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 45 LWRASTEVEAPPEEVLQRILRER---HLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHH---hccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 3578899999999999988 743 799996 77777775542211122222221 1111344444443333332
Q ss_pred eEEEEEEec--cccCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCC
Q 031431 79 KLKYSVIEG--NDLADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVE 127 (159)
Q Consensus 79 ~~~y~v~eg--~~l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~ 127 (159)
.+...=++- ..-.+| +.......+.++|.++++|.+++.+..+|.|..+
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP 172 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSP 172 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCC
Confidence 222222211 110121 2233334556789877889999999999987643
No 58
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=94.81 E-value=1.6 Score=34.61 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=78.3
Q ss_pred EEEEEEEEc-CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC---CceeEE-EEEEEEEeccc-
Q 031431 5 TYESEETYA-VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG---GQVKYA-KHKIEEEDKVN- 77 (159)
Q Consensus 5 ~~~~e~~i~-apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~-kErl~~~D~~~- 77 (159)
.+..+.+++ ++++.+.+++ |... .++|... +.+.++++-...--.|-...+..- ..-..+ .=++...++..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~-r~~Wd~~-~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~ 130 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDV-RMDWETT-LENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEE 130 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhh-HHHHHhh-hheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccc
Confidence 367777887 9999999999 9886 7899985 888777655321011212221110 100111 11222233321
Q ss_pred ----c---eEEEEEEeccccCC-CceeEEEEE---------------EEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH
Q 031431 78 ----L---KLKYSVIEGNDLAD-YKLEKISFE---------------HQWRASPNGGSICKTICKLHAKGEVEVTEEQAK 134 (159)
Q Consensus 78 ----~---~~~y~v~eg~~l~~-Y~~~~~~~~---------------~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~ 134 (159)
. .+..++. -+-.+. -+.-.+... .+++| ++++|.+++.+..+|.|. .|.-.++
T Consensus 131 ~~~~~~~vii~~Sv~-h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~--iP~wvvn 206 (235)
T cd08872 131 PNAHDTWIVCNFSVD-HDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGW--APASVLR 206 (235)
T ss_pred ccCCCeEEEEEeccc-CccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCC--ccHHHHH
Confidence 1 1222222 111111 011111111 11234 356799999988888875 3344444
Q ss_pred -hHHHHHHHHHHHHHHHHhhC
Q 031431 135 -AGKERVLGVVKGVEAYLQAN 154 (159)
Q Consensus 135 -~~~~~~~~~~k~le~~l~~~ 154 (159)
.++..+-++++.|.+|++.+
T Consensus 207 ~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 207 AVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHhhchHHHHHHHHHHHHh
Confidence 77778899999999999875
No 59
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.60 E-value=1.5 Score=33.23 Aligned_cols=146 Identities=14% Similarity=0.031 Sum_probs=79.8
Q ss_pred EEEEEEEEEcCCHHHHHh-hh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC-Cce---eEEEEEEEEEe-cc
Q 031431 4 VTYESEETYAVPPARMFN-AL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG-GQV---KYAKHKIEEED-KV 76 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~-~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g-~~~---~~~kErl~~~D-~~ 76 (159)
..+..+..++++++++.. ++ |... .++|.+. +.++++++-...-..|..+....- ++. .++--|-...+ +.
T Consensus 45 ~~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 45 EASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 456778889999998554 55 7775 7999996 777777654321134555443311 121 22222222222 23
Q ss_pred cceEEEEEEecccc---CCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHHH
Q 031431 77 NLKLKYSVIEGNDL---ADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAYL 151 (159)
Q Consensus 77 ~~~~~y~v~eg~~l---~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~l 151 (159)
...+...-++.+-. +.| +.......+.++|.+++.|.++|....++.+.. |.-.++ .++.....+++.+-+.|
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~~ 200 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVATL 200 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHHH
Confidence 33333322222211 111 112222345567877778999999999998753 233333 45556667777777666
Q ss_pred hh
Q 031431 152 QA 153 (159)
Q Consensus 152 ~~ 153 (159)
..
T Consensus 201 ~~ 202 (206)
T smart00234 201 QK 202 (206)
T ss_pred HH
Confidence 54
No 60
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.40 E-value=2.8 Score=32.13 Aligned_cols=142 Identities=9% Similarity=0.055 Sum_probs=74.6
Q ss_pred EEEEEEEcCCHHHHHhhh-c--CCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec-C-C---ceeEE-EEEEEEEecc
Q 031431 6 YESEETYAVPPARMFNAL-A--SDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE-G-G---QVKYA-KHKIEEEDKV 76 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d--~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~-g-~---~~~~~-kErl~~~D~~ 76 (159)
+..+.+|+++++++.+.+ | ... .++|.+. +.++++++.-+..=.|-...+.. . + +-.++ .+....+++.
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 678889999999999999 7 454 6899986 88888887653211122222211 1 1 01122 1211223332
Q ss_pred cceEEEEEEeccc---cCCCc-eeEEEEEEEEEECC--CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431 77 NLKLKYSVIEGND---LADYK-LEKISFEHQWRASP--NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA 149 (159)
Q Consensus 77 ~~~~~y~v~eg~~---l~~Y~-~~~~~~~~~~~p~~--~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 149 (159)
...+...-++-+. .++|- .......+-+.|.+ +++|.++|.+..+|.|.. |.-.+. .+.+....+++.|..
T Consensus 126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~lr~ 203 (206)
T cd08867 126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI--PQSLVESAMPSNLVNFYTDLVK 203 (206)
T ss_pred eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC--cHHHHHhhhhhhHHHHHHHHHH
Confidence 2222222222111 22221 11112223346654 357999999999999753 344433 334444566666666
Q ss_pred HH
Q 031431 150 YL 151 (159)
Q Consensus 150 ~l 151 (159)
|+
T Consensus 204 ~~ 205 (206)
T cd08867 204 GV 205 (206)
T ss_pred hc
Confidence 54
No 61
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=93.30 E-value=3 Score=32.15 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=77.7
Q ss_pred EEEEEEEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCc-EEEEEEec---CCceeEEEEEEEEEe-cc
Q 031431 4 VTYESEETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-IKKFTIVE---GGQVKYAKHKIEEED-KV 76 (159)
Q Consensus 4 ~~~~~e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~---g~~~~~~kErl~~~D-~~ 76 (159)
..+..+.++ ++|++.+++++ |... .++|.+. +.+.++++-++..|+ |-.+.+.. -.+-.++--|-.-.| +.
T Consensus 50 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 50 YEYLVRGVFEDCTPELLRDFYWDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred eEEEEEEEEcCCCHHHHHHHHcChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 457777888 67999999999 8776 7899996 666777765532122 12222211 111123333322233 22
Q ss_pred cceEEEEEEeccccC--CC-ceeEEEEEEEEEEC--CCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 77 NLKLKYSVIEGNDLA--DY-KLEKISFEHQWRAS--PNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 77 ~~~~~y~v~eg~~l~--~Y-~~~~~~~~~~~~p~--~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
...+...-+.-+..+ +| +.......+.+.|. ++++|.+.++.--+|.+. .|.-.++ .++...-.+++.|..-
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHH
Confidence 222222222211110 11 12222233445676 556788888877777544 4455544 5556667788888776
Q ss_pred Hh
Q 031431 151 LQ 152 (159)
Q Consensus 151 l~ 152 (159)
+.
T Consensus 206 ~~ 207 (209)
T cd08870 206 LR 207 (209)
T ss_pred Hh
Confidence 54
No 62
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=92.85 E-value=2.9 Score=30.86 Aligned_cols=107 Identities=19% Similarity=0.205 Sum_probs=57.3
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcc---cccCC---ceeEEEEEcCCCCCCcEEEE-EEec-CCc---------eeEEE
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPS---KIFPD---VVKNVEVLEGNGGPGSIKKF-TIVE-GGQ---------VKYAK 67 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp---~~~P~---~v~s~~~~eG~g~~GsvR~~-~~~~-g~~---------~~~~k 67 (159)
|+.++++++|+|+||+++ |..= +. +-+.. .+.+++ .+|+| -+++.- .+.. ..| ...++
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 467899999999999999 6531 11 12221 244444 23433 111111 1221 111 01222
Q ss_pred --EEEEEEecccceEEEEEEe-ccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEc
Q 031431 68 --HKIEEEDKVNLKLKYSVIE-GNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAK 123 (159)
Q Consensus 68 --Erl~~~D~~~~~~~y~v~e-g~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~ 123 (159)
|+-...++..+..+|++-- |.+ .++..+++|.|. +++|.+.+.++....
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~P------~~~~G~~~L~~~-~~gt~~~~~g~v~v~ 128 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGAP------VSISGTMRLRPD-GGGTRLTVEGEVKVK 128 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCce------EEEEEEEEEecC-CCCEEEEEEEEEEEE
Confidence 2332336667776776432 322 334556677884 457999999999884
No 63
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=92.11 E-value=4.5 Score=31.22 Aligned_cols=145 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred EEEEEEEEE-cCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCc-EEEEEEecC---CceeEEEEEEEEEeccc
Q 031431 4 VTYESEETY-AVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGS-IKKFTIVEG---GQVKYAKHKIEEEDKVN 77 (159)
Q Consensus 4 ~~~~~e~~i-~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gs-vR~~~~~~g---~~~~~~kErl~~~D~~~ 77 (159)
..+..+.++ ++|++.+.+++ |... .++|.+. +.++++++.+...++ |-.+.+..- ..-.++-.|-...|+++
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 356676667 99999999999 8876 7899996 777888876432222 222222211 11124444544566555
Q ss_pred ceE---EEEEEe-c-cccCCC-ceeEEEEEEEEEECC---CCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHH
Q 031431 78 LKL---KYSVIE-G-NDLADY-KLEKISFEHQWRASP---NGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGV 147 (159)
Q Consensus 78 ~~~---~y~v~e-g-~~l~~Y-~~~~~~~~~~~~p~~---~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~l 147 (159)
..+ .+++-. . +..++| +.......+.+.|.+ +++|.+.+..--+|.+ ..|.-.++ .++...-.+++.|
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG--~IP~~lvN~~~~~~~~~~l~~l 200 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGV--NIPSYITSWVAMSGMPDFLERL 200 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCC--ccCHHHHHHHHHhhccHHHHHH
Confidence 431 111211 1 001111 223333445556763 4578877655444443 34444444 5566667788877
Q ss_pred HHHHh
Q 031431 148 EAYLQ 152 (159)
Q Consensus 148 e~~l~ 152 (159)
...++
T Consensus 201 ~~a~~ 205 (207)
T cd08911 201 RNAAL 205 (207)
T ss_pred HHHHh
Confidence 76654
No 64
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=91.06 E-value=5.3 Score=30.03 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=85.7
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecCC--ce---eEEEEEEEEE-ecc
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEGG--QV---KYAKHKIEEE-DKV 76 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g~--~~---~~~kErl~~~-D~~ 76 (159)
..+..+..++++++++...+ +... .|-+. +.++++++--..-..|..+.+..-. +. .++--|.... .+.
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~ 121 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLLDDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG 121 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred eEEEEEEEEcCChHHHHHHHHhhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence 45678889999999888888 6553 89985 7788877663222456655544322 32 2222222222 333
Q ss_pred cceEEEEEEeccc-c---CC-CceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHHH
Q 031431 77 NLKLKYSVIEGND-L---AD-YKLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEAY 150 (159)
Q Consensus 77 ~~~~~y~v~eg~~-l---~~-Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~~ 150 (159)
...+..+=++.+. . +. .+.......+.++|.+++.|.+++...-++.+. .|.-.++ .+......+++.+-++
T Consensus 122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~--iP~~~~n~~~~~~~~~~~~~~~~~ 199 (206)
T PF01852_consen 122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGW--IPSWLVNMVVKSQPPNFLKNLRKA 199 (206)
T ss_dssp EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSS--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCC--ChHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344443233222 1 11 122222234556888777799999988888875 3344444 4455567888888888
Q ss_pred HhhCC
Q 031431 151 LQANP 155 (159)
Q Consensus 151 l~~~~ 155 (159)
|.+++
T Consensus 200 ~~~~~ 204 (206)
T PF01852_consen 200 LKKQK 204 (206)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 87765
No 65
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=90.27 E-value=7.3 Score=30.32 Aligned_cols=119 Identities=8% Similarity=0.078 Sum_probs=65.9
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCC-CCCcEEEE-EEe-cCCceeEEEEEEEEEecccce
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNG-GPGSIKKF-TIV-EGGQVKYAKHKIEEEDKVNLK 79 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g-~~GsvR~~-~~~-~g~~~~~~kErl~~~D~~~~~ 79 (159)
..+..+.+++++++++...+ |. .++|.+. +.+..+++--+ ..=-++.. ... +...-.++.-|.-..|..+..
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence 45788999999999999999 66 4789986 55555554432 11111111 111 111113444444434444443
Q ss_pred EEEEEE--eccccC--CCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCC
Q 031431 80 LKYSVI--EGNDLA--DYKLEKISFEHQWRASPNGGSICKTICKLHAKGEV 126 (159)
Q Consensus 80 ~~y~v~--eg~~l~--~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~ 126 (159)
+.-... +-+.++ ..+.-.......++|.++|+|.++..+..+|.|..
T Consensus 128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 322211 111111 11222233455678988889999999999998763
No 66
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=84.99 E-value=16 Score=28.21 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=74.0
Q ss_pred EEEEEEEEEc-CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEecC---CceeEE-EEEEEEEeccc
Q 031431 4 VTYESEETYA-VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVEG---GQVKYA-KHKIEEEDKVN 77 (159)
Q Consensus 4 ~~~~~e~~i~-apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~g---~~~~~~-kErl~~~D~~~ 77 (159)
..+..+.+++ ++++.+.+++ |... .++|.+.. .++...+.++. -|-.+.+..- ..-.++ .-+...+|...
T Consensus 49 ~~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~~-~~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 49 YEYKVFGVLEDCSPSLLADVYMDLEY-RKQWDQYV-KELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHHHH-HhheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 4567778887 7999999999 9886 78999964 44322222221 2223333211 111122 11222344444
Q ss_pred ceEEE---EEEeccc---cCCC-ceeEEEEEEEEEECCCCCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHHH
Q 031431 78 LKLKY---SVIEGND---LADY-KLEKISFEHQWRASPNGGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVEA 149 (159)
Q Consensus 78 ~~~~y---~v~eg~~---l~~Y-~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le~ 149 (159)
..+.. ...+-+. .++| +...+...+.++|.++++|.+++..-.+|.+. .|.-.++ .+++....+++.|..
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l~k 202 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDMQK 202 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHHHH
Confidence 32111 1111111 1111 22333444556777677898888877777554 3444444 556666777777766
Q ss_pred HH
Q 031431 150 YL 151 (159)
Q Consensus 150 ~l 151 (159)
..
T Consensus 203 a~ 204 (207)
T cd08910 203 AC 204 (207)
T ss_pred HH
Confidence 54
No 67
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=83.48 E-value=15 Score=26.94 Aligned_cols=113 Identities=15% Similarity=0.078 Sum_probs=62.6
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC-CCCCcEEEEEEe-cCCce-eEEEEEEEE--Eeccc
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN-GGPGSIKKFTIV-EGGQV-KYAKHKIEE--EDKVN 77 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~-g~~GsvR~~~~~-~g~~~-~~~kErl~~--~D~~~ 77 (159)
+++....+|+||.+-||+-. ..++ +..+-|. .+ +-.-+|+ -+.|+--.+.+. -|.++ .+-+-|.++ +|+..
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrpd~-lq~LTpp-w~-VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~~ 78 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRPDA-LQRLTPP-WI-VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNGS 78 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCccH-HHhcCCC-cE-EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCcc
Confidence 56888899999999999998 6665 4455554 22 2222342 123333222221 12111 122233344 66665
Q ss_pred ceEEEEEEeccccCCCceeEEEEEEEEEECCCCCeEEEEEEEEEEcCC
Q 031431 78 LKLKYSVIEGNDLADYKLEKISFEHQWRASPNGGSICKTICKLHAKGE 125 (159)
Q Consensus 78 ~~~~y~v~eg~~l~~Y~~~~~~~~~~~~p~~~g~t~v~W~~~~e~~~~ 125 (159)
+ ++=..+.|+.-..| -.- +..|.+. +|+|++.=++.|+...+
T Consensus 79 ~-FtDv~i~gPfp~~~--WrH--tH~F~~e-gg~TvliD~Vsye~p~g 120 (153)
T COG4276 79 R-FTDVCITGPFPALN--WRH--THNFVDE-GGGTVLIDSVSYELPAG 120 (153)
T ss_pred e-eeeeeecCCcccee--eEE--EeeeecC-CCcEEEEeeEEeeccCc
Confidence 5 45556666652222 222 3345665 45899999999998654
No 68
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=70.65 E-value=32 Score=27.08 Aligned_cols=105 Identities=10% Similarity=0.080 Sum_probs=61.6
Q ss_pred EEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEE--ecCCceeEEEEEEEEEecccceEEEEEE
Q 031431 9 EETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTI--VEGGQVKYAKHKIEEEDKVNLKLKYSVI 85 (159)
Q Consensus 9 e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~--~~g~~~~~~kErl~~~D~~~~~~~y~v~ 85 (159)
..-+..+++.+|+++ +-.+ ..+..| ..++..+..-+-+-+.+-.+.. ++=. +...=+ +.+++..++.+ ..-
T Consensus 73 rrligysp~~my~vVS~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l~--E~y~S~-Vt~~~p~l~kt-~~~ 146 (227)
T KOG3177|consen 73 RRLIGYSPSEMYSVVSNVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPLD--ERYTSN-VTCVKPHLTKT-VCA 146 (227)
T ss_pred HhhhCCCHHHHHHHHHhHHH-hhcccc-ceeccceeecCCCCCceeeEEecCcccc--hhheee-eEEecccceEE-eec
Confidence 345789999999999 6665 566677 4555565544411134444433 2211 122223 33666666532 445
Q ss_pred eccccCCCceeEEEEEEEEEECC--CCCeEEEEEEEEEEcC
Q 031431 86 EGNDLADYKLEKISFEHQWRASP--NGGSICKTICKLHAKG 124 (159)
Q Consensus 86 eg~~l~~Y~~~~~~~~~~~~p~~--~g~t~v~W~~~~e~~~ 124 (159)
+|.++... ...+++.|+. .+.|.+.....|+-..
T Consensus 147 d~rLF~~L-----~t~Wsf~pg~~~p~tc~ldf~v~FeF~S 182 (227)
T KOG3177|consen 147 DGRLFNHL-----ITIWSFKPGPNIPRTCTLDFSVSFEFKS 182 (227)
T ss_pred cccHHHhh-----hheeeeccCCCCCCeEEEEEEEEEEehh
Confidence 66554321 1245668887 4789999999998865
No 69
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=69.85 E-value=51 Score=25.73 Aligned_cols=122 Identities=7% Similarity=0.033 Sum_probs=65.0
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcE-EEEEEecCCce----eEEE-EEEEEEecccc
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSI-KKFTIVEGGQV----KYAK-HKIEEEDKVNL 78 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~Gsv-R~~~~~~g~~~----~~~k-Erl~~~D~~~~ 78 (159)
+..|..|+..++++|+.+ +... ..+|=|. +++++++|-=+.-=+| |.++.+..+.. .++- -+.....+.-.
T Consensus 49 ~R~Egvv~~~~~ev~d~v~~~~~-r~~Wd~~-v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~ 126 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIRPGPY-RLDWDSL-MTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLL 126 (202)
T ss_pred EEEEEEecCCHHHHHHHHhcccc-hhcccch-hhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeE
Confidence 556778889999999999 8664 6799995 9999988753221223 34444333211 1111 11111222222
Q ss_pred eEEEEEEeccc----cCCCceeEEEEEEEEEECCCC--CeEEEEEEEEEEcCCCCCCHHHHH
Q 031431 79 KLKYSVIEGND----LADYKLEKISFEHQWRASPNG--GSICKTICKLHAKGEVEVTEEQAK 134 (159)
Q Consensus 79 ~~~y~v~eg~~----l~~Y~~~~~~~~~~~~p~~~g--~t~v~W~~~~e~~~~~~~~~~~~~ 134 (159)
++.-++.-... ...+..- .-+-+.|.+++ .|.++|-+..++.+. .|...++
T Consensus 127 s~gvs~~~~~~ppg~VRgen~p---~g~i~~Pl~~~p~k~~~t~~lq~DLkG~--LPqsiId 183 (202)
T cd08902 127 SCGVSIEYEEARPNFVRGFNHP---CGWFCVPLKDNPSHSLLTGYIQTDLRGM--LPQSAVD 183 (202)
T ss_pred EEEeeecCCCCCCCeEeecccc---cEEEEEECCCCCCceEEEEEEEecCCCC--ccHHHHH
Confidence 22222221111 1111111 12224676554 689999999888875 4555554
No 70
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=60.54 E-value=5.9 Score=28.96 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=30.3
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN 46 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~ 46 (159)
+.++.++..+.+.+.+-.++ |..-+||+++|. ++++. ++++
T Consensus 1 M~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 1 MEIEIEIKTSHDIEVVLTILSDPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp --EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTT-EEEEE--STT
T ss_pred CeEEEEeccCCChHheEEEecCCccEecccCCc-eEEEE-ecCC
Confidence 46788999999999999999 888889999995 88888 4443
No 71
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=29 Score=29.03 Aligned_cols=24 Identities=4% Similarity=0.032 Sum_probs=16.6
Q ss_pred EEEEEEEEEECCCCCeEEEEEEEEE
Q 031431 97 KISFEHQWRASPNGGSICKTICKLH 121 (159)
Q Consensus 97 ~~~~~~~~~p~~~g~t~v~W~~~~e 121 (159)
..+.++ +...+++||+=-|.+.|.
T Consensus 297 NmtGti-LsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 297 NMTGTI-LSSTGDDGCVRLWKANYN 320 (361)
T ss_pred eeeeeE-EeecCCCceeeehhhhhh
Confidence 344443 456677899999998874
No 72
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=53.62 E-value=23 Score=28.59 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=27.7
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.+...+++..+.....+...+..+..+.+.+.+|+.+.++|+-|
T Consensus 238 ~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 238 YFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred eEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 35566655332211111122344577899999999999999976
No 73
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=49.09 E-value=28 Score=28.31 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=26.5
Q ss_pred EEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 116 TICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 116 W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
|.+++++..+.+++ +. ..+..+.+.+.+|+++.++|+-|
T Consensus 249 ~~i~~~~~~~~~~~-~~---~~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATELS-VD---PEQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCCC-CC---HHHHHHHHHHHHHHHHHcCchHH
Confidence 66667654332222 22 23578899999999999999865
No 74
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=46.89 E-value=32 Score=27.74 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.+.+.|++.....++ +.+ .+.++.+.+.+|+++.++|+-|
T Consensus 238 ~y~i~~~~~~~~~~~-~~~---~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDMYS-TDV---EVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCCCC-CCH---HHHHHHHHHHHHHHHHcCcHHh
Confidence 466667654322122 222 2478899999999999999875
No 75
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=46.79 E-value=1.3e+02 Score=23.18 Aligned_cols=139 Identities=9% Similarity=0.071 Sum_probs=70.1
Q ss_pred EEEEEEEcCCHHHHHhhh-cCCCCcccccCCceeEEEEEcCCCCCCcEEEEEEec-C-C---ceeEEEEEEE-EEecccc
Q 031431 6 YESEETYAVPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGNGGPGSIKKFTIVE-G-G---QVKYAKHKIE-EEDKVNL 78 (159)
Q Consensus 6 ~~~e~~i~apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~g~~GsvR~~~~~~-g-~---~~~~~kErl~-~~D~~~~ 78 (159)
+..+..++++++++|+.+ +... ..+|-+. +..++++|-=+.-=.|-+....+ + + +-.++-=|-. .+++...
T Consensus 48 ~k~egvi~~~~e~v~~~l~~~e~-r~~Wd~~-~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ 125 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMYQPEH-RIKWDKS-LQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMN 125 (204)
T ss_pred EEEEEEecCCHHHHHHHHhccch-hhhhccc-ccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEE
Confidence 567889999999999999 8665 6899994 88877775421101122211121 1 1 1122222211 2244333
Q ss_pred eEEEEEEecccc---CCC-ceeEEEEEEEEEECCC--CCeEEEEEEEEEEcCCCCCCHHHHH-hHHHHHHHHHHHHH
Q 031431 79 KLKYSVIEGNDL---ADY-KLEKISFEHQWRASPN--GGSICKTICKLHAKGEVEVTEEQAK-AGKERVLGVVKGVE 148 (159)
Q Consensus 79 ~~~y~v~eg~~l---~~Y-~~~~~~~~~~~~p~~~--g~t~v~W~~~~e~~~~~~~~~~~~~-~~~~~~~~~~k~le 148 (159)
.+...-++-+-. .+| +.+....-+-+.|.++ ++|.+.|-+..++.|. .|...+. ........++..+.
T Consensus 126 ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~--lP~~vv~~~~~~~~~~f~~~~~ 200 (204)
T cd08904 126 IVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN--LSRSVIEKTMPTNLVNLILDAK 200 (204)
T ss_pred EEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC--CCHHHHHHHhHHHHHHHHHHHH
Confidence 333333332221 111 1111112233467654 3799999999999875 4444443 22223344444443
No 76
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=46.38 E-value=30 Score=28.19 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=27.5
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.+.+.+++.-+.+..++.-.+..+.++.+.+.+|+.+.++|+-|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 47777766432211111111233578899999999999999976
No 77
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=45.62 E-value=22 Score=28.90 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=30.9
Q ss_pred CCHHHHHhhh-cCCCCcccccCCceeEEEEEcCC----CCCCcEEEEEEecC
Q 031431 14 VPPARMFNAL-ASDNLPSKIFPDVVKNVEVLEGN----GGPGSIKKFTIVEG 60 (159)
Q Consensus 14 apa~~vW~~~-d~~~~lp~~~P~~v~s~~~~eG~----g~~GsvR~~~~~~g 60 (159)
.-.+++.+.+ .|.+.+|+|+| ...+- -|. +....+|++.+..-
T Consensus 143 ~~~~R~~K~L~TFtnv~pdwhP--LnA~h--~~pCn~C~~ksQ~rkMvlekv 190 (275)
T PF15499_consen 143 KYQNRCTKTLVTFTNVIPDWHP--LNAVH--FGPCNSCNSKSQRRKMVLEKV 190 (275)
T ss_pred hhhhhheeeecccCCCCCCCCc--ccccc--cCCCcccCChHHhHhhhhhcC
Confidence 3478999999 99999999999 45543 343 45667777766543
No 78
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=42.08 E-value=42 Score=27.32 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=27.2
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.|.+.+++.....+ ++.+ .+.++.+.+.||+++.++|+-|
T Consensus 248 ~y~i~i~~~~~~~~-~~~i---~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADFP-SDDV---IADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCcHhh
Confidence 46677765432222 2223 2478899999999999999875
No 79
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=41.83 E-value=41 Score=27.38 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.|.+.+++..+..+. +. ..+....+.+.||+++.++|+-|
T Consensus 251 ~~~i~~~~~~~~~~~-~d---~~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPPL-DD---AEATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCCC-CC---HHHHHHHHHHHHHHHHHcCchHH
Confidence 466667664332222 22 23477888999999999999865
No 80
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=40.95 E-value=44 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.279 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 031431 138 ERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 138 ~~~~~~~k~le~~l~~~~~~y 158 (159)
+.++.+.+.+|+++..+|+-|
T Consensus 258 ~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 258 RAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHcCcHHh
Confidence 477899999999999999976
No 81
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=38.86 E-value=49 Score=27.02 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.|.+.+++..+..+. +. ..+.++.+.+.+|+++.++|+-|
T Consensus 257 ~~~i~~~~~~~~~~~-~d---~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLS-AD---DETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCC-CC---HHHHHHHHHHHHHHHHHcCcHHH
Confidence 466667664332222 22 22477889999999999999865
No 82
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=38.60 E-value=45 Score=26.80 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=26.7
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.+.+.+.+.....+ ++.+. +..+.+.+.+|+++.++|+-|
T Consensus 232 ~~~i~i~~~~~~~~-~~~~~---~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 232 TVTLHFYPAWDSFP-SEDAQ---ADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred cEEEEEecCCCCCC-CCCHH---HHHHHHHHHHHHHHHcCcHHH
Confidence 36666655322222 22222 578999999999999999865
No 83
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=38.56 E-value=50 Score=26.71 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=26.6
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.+.+.+++..+..+ .+.+ .+.++.+.+.+|+++.++|+-|
T Consensus 245 ~~~i~~~~~~~~~~-~~~~---~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 245 GYRLKIDPPLDDFP-GDDE---IAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred eEEEEEeCCCCCCC-CCCH---HHHHHHHHHHHHHHHHcCcHHH
Confidence 36666665432212 2222 2578889999999999999865
No 84
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=35.77 E-value=72 Score=25.71 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCC
Q 031431 136 GKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 136 ~~~~~~~~~k~le~~l~~~~~~y 158 (159)
..+..+.+.+.||+++.++|+-|
T Consensus 259 ~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 259 ILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 34678899999999999999975
No 85
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=33.50 E-value=84 Score=25.12 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=28.7
Q ss_pred EEEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 114 CKTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 114 v~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
..|...+++.-+....+ . ..+.++.+.+.||+.+.+||+-|
T Consensus 246 ~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE-D---IEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc-h---HHHHHHHHHHHHHHHHHcChHhh
Confidence 56777777743322222 2 23578899999999999999865
No 86
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=33.14 E-value=64 Score=26.26 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=25.7
Q ss_pred EEEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 115 KTICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 115 ~W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
.|.+.+++.-...+. +... +.++.+.+.+|+++.++|+-|
T Consensus 249 ~~~i~~~~~~~~~~~-~~~~---~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 249 GYRLVIHPPLEDFPG-ESEE---ADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred eEEEEEeCCCcCCCC-CCHH---HHHHHHHHHHHHHHHcCcHHH
Confidence 466667653222222 2222 356789999999999999865
No 87
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=32.98 E-value=81 Score=23.08 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCC
Q 031431 137 KERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 137 ~~~~~~~~k~le~~l~~~~~~y 158 (159)
.+.++.+.+.||+.+.++|+.|
T Consensus 163 ~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 163 EEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHhCchhh
Confidence 3578899999999999999875
No 88
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=32.81 E-value=1.3e+02 Score=20.56 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.9
Q ss_pred EEecccceEEEEEEecc
Q 031431 72 EEDKVNLKLKYSVIEGN 88 (159)
Q Consensus 72 ~~D~~~~~~~y~v~eg~ 88 (159)
-+|..+|.|+|.-++|.
T Consensus 38 YId~~~RtYtw~PI~gT 54 (94)
T PF08473_consen 38 YIDEVNRTYTWTPINGT 54 (94)
T ss_pred eeeeeceeEEEeccCCC
Confidence 47899999999998885
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=30.71 E-value=2.9e+02 Score=25.74 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=41.8
Q ss_pred EEEEEEEEEcCCHHHHHhhh-cCCCCccc--ccCCceeEEEEEcCC-----CCCCcEEEEEEecCCceeEEEEEEEEEec
Q 031431 4 VTYESEETYAVPPARMFNAL-ASDNLPSK--IFPDVVKNVEVLEGN-----GGPGSIKKFTIVEGGQVKYAKHKIEEEDK 75 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vW~~~-d~~~~lp~--~~P~~v~s~~~~eG~-----g~~GsvR~~~~~~g~~~~~~kErl~~~D~ 75 (159)
..+-...-+.++|||.=+++ + ..++.. -|-+.|....++.+. +--|.||.|.+.++ .+.|. .-.
T Consensus 147 ~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge----~l~~~---~gh 218 (745)
T KOG0301|consen 147 ASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGE----VLLEM---HGH 218 (745)
T ss_pred eecCCCcEEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCc----eeeee---ecc
Confidence 33444455778888876666 3 322322 244457776666653 23599999998433 33333 336
Q ss_pred ccceEEEE
Q 031431 76 VNLKLKYS 83 (159)
Q Consensus 76 ~~~~~~y~ 83 (159)
.++.|+++
T Consensus 219 tn~vYsis 226 (745)
T KOG0301|consen 219 TNFVYSIS 226 (745)
T ss_pred ceEEEEEE
Confidence 66666666
No 90
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.55 E-value=76 Score=25.65 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCCCCHHHHHhHHHHHHHHHHHHHHHHhhCCCCC
Q 031431 116 TICKLHAKGEVEVTEEQAKAGKERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 116 W~~~~e~~~~~~~~~~~~~~~~~~~~~~~k~le~~l~~~~~~y 158 (159)
+.+++.+.-.. ++.+ +..+.+..+.+.||+++.++|+-|
T Consensus 236 y~v~~~~~~~~-~~~~---~~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 236 WGFRVHPPLDV-PSAE---DVAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred EEEEEeCCCCC-Cchh---HHHHHHHHHHHHHHHHHHhChHHH
Confidence 66667654322 2222 234688999999999999999865
No 91
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.61 E-value=1.1e+02 Score=24.76 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 031431 138 ERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 138 ~~~~~~~k~le~~l~~~~~~y 158 (159)
+.++.+.+.+|+++.++|+-|
T Consensus 255 ~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 255 LDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHcCcHhH
Confidence 468899999999999999875
No 92
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=25.68 E-value=1.5e+02 Score=17.62 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhCC
Q 031431 133 AKAGKERVLGVVKGVEAYLQANP 155 (159)
Q Consensus 133 ~~~~~~~~~~~~k~le~~l~~~~ 155 (159)
++...+.+...++.||++|..++
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 44566788889999999998877
No 93
>PF10470 AKAP7_RIRII_bdg: PKA-RI-RII subunit binding domain of A-kinase anchor protein; InterPro: IPR019511 This entry represents the RI-RII subunit-binding domain found at the C-terminal of the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA, for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes, by binding to its regulatory subunits, RI and RII, hence being known as a dual-specific AKAP []. The 25 crucial amino acids of RII-binding domains in general form structurally conserved amphipathic helices with unrelated sequences; hydrophobic amino acid residues form the backbone of the interaction and hydrogen bond- and salt-bridge-forming amino acid residues increase the affinity of the interaction []. The nuclear localisation signal-containing domain is found at the N terminus.
Probab=24.30 E-value=1.3e+02 Score=18.67 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=19.6
Q ss_pred HHHHhHHHHH-HHHHHHHHHHHhhCC
Q 031431 131 EQAKAGKERV-LGVVKGVEAYLQANP 155 (159)
Q Consensus 131 ~~~~~~~~~~-~~~~k~le~~l~~~~ 155 (159)
++++.++..+ ..++|++.+|+..++
T Consensus 8 eL~~lSKrlVenAVlkAvQQy~eEtq 33 (61)
T PF10470_consen 8 ELVRLSKRLVENAVLKAVQQYLEETQ 33 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777 689999999998765
No 94
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=22.51 E-value=88 Score=20.85 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhCCCCCC
Q 031431 141 LGVVKGVEAYLQANPDVCN 159 (159)
Q Consensus 141 ~~~~k~le~~l~~~~~~y~ 159 (159)
..++..|++.+.+||+.|.
T Consensus 45 ~~Vl~el~~c~~~~p~~YV 63 (84)
T cd00307 45 AQVLAALEACLAEHPGEYV 63 (84)
T ss_pred HHHHHHHHHHHHHCCCCeE
Confidence 3467889999999999883
No 95
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=22.31 E-value=83 Score=21.63 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhCCCCCC
Q 031431 143 VVKGVEAYLQANPDVCN 159 (159)
Q Consensus 143 ~~k~le~~l~~~~~~y~ 159 (159)
++..||+.+.+||+.|.
T Consensus 61 Vl~el~~c~~~~p~~yV 77 (99)
T PF00101_consen 61 VLAELEACLAEHPGEYV 77 (99)
T ss_dssp HHHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHHhCCCceE
Confidence 67789999999999883
No 96
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=21.63 E-value=66 Score=26.00 Aligned_cols=17 Identities=29% Similarity=0.743 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhhCCCC
Q 031431 141 LGVVKGVEAYLQANPDV 157 (159)
Q Consensus 141 ~~~~k~le~~l~~~~~~ 157 (159)
-+++++|+.||.+||..
T Consensus 220 D~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPGL 236 (258)
T ss_pred chHHHHHHHHHHHcccC
Confidence 37899999999999963
No 97
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=21.37 E-value=1.4e+02 Score=23.95 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 031431 138 ERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 138 ~~~~~~~k~le~~l~~~~~~y 158 (159)
+..+.+.+.+|+++.++|+-|
T Consensus 245 ~~t~~~~~~lE~~Ir~~PeQW 265 (289)
T PRK08905 245 ADAAVINAEIERLIRRFPTQY 265 (289)
T ss_pred HHHHHHHHHHHHHHHcCcHHh
Confidence 578899999999999999865
No 98
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=20.92 E-value=1.3e+02 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCC
Q 031431 138 ERVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 138 ~~~~~~~k~le~~l~~~~~~y 158 (159)
+.++.|-+.+|+.+.++|+-|
T Consensus 269 ~~a~~mn~~~E~~I~~~PeQy 289 (308)
T COG1560 269 ADAQRMNDFVEKWIRAHPEQY 289 (308)
T ss_pred HHHHHHHHHHHHHHHcChHHH
Confidence 378899999999999999866
No 99
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=20.58 E-value=1e+02 Score=21.28 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhCCCCC
Q 031431 142 GVVKGVEAYLQANPDVC 158 (159)
Q Consensus 142 ~~~k~le~~l~~~~~~y 158 (159)
.++..|++.+.+||+.|
T Consensus 61 ~Vl~ei~~C~~~~p~~Y 77 (99)
T cd03527 61 QVLREIEACRKAYPDHY 77 (99)
T ss_pred HHHHHHHHHHHHCCCCe
Confidence 46788999999999988
No 100
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=20.37 E-value=1.4e+02 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhCCCCC
Q 031431 139 RVLGVVKGVEAYLQANPDVC 158 (159)
Q Consensus 139 ~~~~~~k~le~~l~~~~~~y 158 (159)
....+.+.+|+.+.++|+-|
T Consensus 268 ~~~~~n~~lE~~Ir~~PeQw 287 (305)
T PRK08025 268 AAAYMNKIIEKEIMRAPEQY 287 (305)
T ss_pred HHHHHHHHHHHHHHcCcHHH
Confidence 56777899999999999865
Done!