Query 031432
Match_columns 159
No_of_seqs 121 out of 1027
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 22:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031432.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031432hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hks_A EIF-5A-2, eukaryotic tr 100.0 1.3E-55 4.5E-60 344.7 19.3 156 1-158 9-165 (167)
2 1x6o_A Eukaryotic initiation f 100.0 6.1E-54 2.1E-58 337.3 20.0 157 1-159 9-174 (174)
3 3er0_A Eukaryotic translation 100.0 3.2E-54 1.1E-58 337.0 16.0 154 1-159 11-166 (167)
4 3cpf_A Eukaryotic translation 100.0 4E-51 1.4E-55 310.9 18.5 138 16-155 1-138 (138)
5 1iz6_A Initiation factor 5A; S 100.0 1.1E-46 3.9E-51 286.4 15.8 136 16-156 1-136 (138)
6 1bkb_A Translation initiation 100.0 3E-44 1E-48 272.3 18.8 129 19-154 6-135 (136)
7 2eif_A IF-5A, protein (eukaryo 100.0 6.4E-43 2.2E-47 265.1 18.2 131 16-156 5-135 (136)
8 3a5z_B EF-P, elongation factor 100.0 5.1E-40 1.7E-44 261.6 14.3 121 17-143 2-122 (191)
9 1ueb_A EF-P, TT0860, elongatio 100.0 2.2E-39 7.6E-44 256.6 16.2 118 21-147 1-118 (184)
10 3tre_A EF-P, elongation factor 100.0 1.1E-38 3.7E-43 254.0 16.2 117 21-143 6-122 (191)
11 1yby_A Translation elongation 100.0 1.6E-38 5.5E-43 256.9 15.7 120 18-143 28-147 (215)
12 3oyy_A EF-P, elongation factor 100.0 7.3E-38 2.5E-42 249.2 14.9 116 21-143 4-121 (191)
13 1khi_A HEX1; membrane sealing, 100.0 2.1E-35 7.2E-40 231.2 15.9 139 11-157 24-172 (176)
14 3r8s_P 50S ribosomal protein L 80.4 3.8 0.00013 29.5 5.6 65 23-89 15-88 (114)
15 3v2d_T 50S ribosomal protein L 77.7 4.7 0.00016 30.2 5.6 65 23-89 18-91 (146)
16 2ftc_K 39S ribosomal protein L 72.9 12 0.00042 26.1 6.4 30 58-87 40-70 (98)
17 2zjr_M 50S ribosomal protein L 65.3 8 0.00027 29.5 4.4 65 23-89 23-96 (166)
18 3qx1_A FAS-associated factor 1 59.3 12 0.00042 24.4 4.1 31 53-84 3-33 (84)
19 3o27_A Putative uncharacterize 58.1 18 0.00062 23.6 4.5 43 109-156 21-63 (68)
20 1ed7_A Chitinase A1, (CHBD-CHI 54.0 4.2 0.00014 24.1 0.9 24 27-50 8-31 (45)
21 2fhd_A RAD9 homolog, DNA repai 52.1 18 0.00063 27.1 4.3 56 6-62 44-110 (153)
22 1at0_A 17-hedgehog; developmen 43.9 29 0.00098 25.1 4.3 30 19-48 84-119 (145)
23 2f9h_A PTS system, IIA compone 43.1 23 0.00079 25.7 3.6 21 25-45 53-73 (129)
24 1k0h_A Gpfii; twisted beta-san 41.3 5.1 0.00017 28.7 -0.2 32 23-57 71-102 (117)
25 2k50_A Replication factor A re 33.7 1.1E+02 0.0037 20.6 6.0 51 22-77 8-62 (115)
26 2z14_A EF-hand domain-containi 33.6 36 0.0012 24.7 3.3 26 21-46 83-108 (133)
27 2ftc_B Mitochondrial ribosomal 33.4 1.3E+02 0.0045 21.8 6.4 14 26-39 50-63 (136)
28 3gs9_A Protein GP18; NP_465809 33.1 68 0.0023 26.4 5.4 53 13-67 34-94 (342)
29 1p6p_A Fatty acid-binding prot 32.0 1.1E+02 0.0039 21.3 5.8 47 59-105 46-92 (125)
30 1mvg_A Liver basic fatty acid 31.5 1.2E+02 0.0041 21.2 5.9 47 59-105 46-92 (125)
31 1ifc_A Intestinal fatty acid b 29.3 1.3E+02 0.0044 21.2 5.8 46 59-104 47-92 (132)
32 1o6a_A Putative flagellar moto 28.4 49 0.0017 22.3 3.2 20 23-42 36-58 (96)
33 2lcj_A PAB POLC intein; hydrol 27.6 1.2E+02 0.0042 22.3 5.6 16 21-36 105-120 (185)
34 1b56_A Fatty acid binding prot 27.1 1.7E+02 0.0057 20.7 6.5 46 59-104 51-96 (135)
35 2exd_A NFED short homolog; mem 26.9 71 0.0024 20.9 3.7 36 24-63 24-59 (80)
36 1o8v_A Fatty acid binding prot 26.6 1.1E+02 0.0037 21.7 4.9 46 59-104 50-95 (134)
37 3ppt_A Sodium-calcium exchange 25.4 1.8E+02 0.006 20.6 5.9 46 59-104 48-93 (133)
38 1mdc_A Insect fatty acid bindi 25.4 1.6E+02 0.0055 20.8 5.7 46 59-104 48-93 (132)
39 1p9k_A ORF, hypothetical prote 25.3 65 0.0022 20.5 3.2 19 25-43 60-78 (79)
40 2rcq_A CRBP-II, retinol-bindin 24.5 1.8E+02 0.0062 20.8 5.9 46 59-104 52-99 (141)
41 2qo4_A Liver-basic fatty acid 24.1 1.2E+02 0.0042 21.2 4.8 47 59-105 47-93 (126)
42 1ftp_A Muscle fatty acid bindi 24.1 1.4E+02 0.0048 21.1 5.1 46 59-104 50-96 (133)
43 2a0a_A DER F 13; beta barrel, 23.5 1.9E+02 0.0065 20.3 5.7 46 59-104 48-94 (131)
44 1ggl_A Protein (cellular retin 23.5 2E+02 0.0068 20.3 6.5 46 59-104 48-95 (134)
45 2f73_A L-FABP, fatty acid-bind 22.8 1.6E+02 0.0054 21.5 5.3 47 59-105 69-116 (149)
46 4a60_A Fatty acid-binding prot 22.5 1.7E+02 0.0058 21.5 5.4 46 59-104 71-116 (154)
47 2eqm_A PHD finger protein 20-l 21.7 85 0.0029 20.9 3.3 35 11-45 3-43 (88)
48 3od3_A Blue copper oxidase CUE 21.7 80 0.0027 27.4 3.9 50 28-85 181-230 (488)
49 2ciu_A TIM21P, import inner me 21.6 2.3E+02 0.0078 20.3 8.1 51 36-107 67-120 (127)
50 1vyf_A SM14, 14 kDa fatty acid 21.5 1.8E+02 0.006 20.6 5.2 46 59-104 50-96 (135)
51 1crb_A Cellular retinol bindin 21.2 1.3E+02 0.0045 21.2 4.5 46 59-104 48-95 (134)
52 1eal_A Gastrotropin, ileal lip 21.0 2.2E+02 0.0074 19.9 5.8 47 59-105 46-93 (127)
53 2pp6_A Gifsy-2 prophage ATP-bi 21.0 1.2E+02 0.004 21.2 3.9 35 14-48 49-85 (102)
54 1fdq_A Fatty acid-binding prot 20.8 1.4E+02 0.0046 21.1 4.4 46 59-104 48-93 (131)
55 4a1y_A Myelin P2 protein; tran 20.2 1.3E+02 0.0044 21.4 4.2 46 59-104 50-95 (133)
No 1
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-55 Score=344.74 Aligned_cols=156 Identities=75% Similarity=1.197 Sum_probs=136.4
Q ss_pred CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCc
Q 031432 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ 80 (159)
|||-+|+|+ +++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+||+|+++|||+||+++|.+|+|+++
T Consensus 9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k 87 (167)
T 3hks_A 9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN 87 (167)
T ss_dssp ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence 789889999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEeeeEEEEEeeCCCcEEEecCCCCeeeeccCCchh-hHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEeccCC
Q 031432 81 CDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE-NLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGP 158 (159)
Q Consensus 81 ve~~~v~~~~~qyly~d~~~~~~fMD~etyeq~~i~l~~~~-~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~~~ 158 (159)
+++|.|++++|||||+|+|+.|+|||++||+|++|+||+ + +|+++++.||++|++|.|++|++||+|+|+++|++++
T Consensus 88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~-~~~lg~~i~~~l~eG~~v~V~v~~~mg~e~i~~~k~~~~ 165 (167)
T 3hks_A 88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPT-DDGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVGG 165 (167)
T ss_dssp EEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCS-CHHHHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCc-hHHHHHHHHHHhhCCCEEEEEEEeeCCeEEEEEEEecCC
Confidence 999999999999999975679999999999999999998 6 9999999999999999999999999999999998653
No 2
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=100.00 E-value=6.1e-54 Score=337.33 Aligned_cols=157 Identities=47% Similarity=0.842 Sum_probs=131.4
Q ss_pred CCccc--cccccccCCCcceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCC
Q 031432 1 MSDEE--HHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78 (159)
Q Consensus 1 ~~~~~--~~~~~~~~~~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~ 78 (159)
|||+. ++|+ +++|++|.|+||++++||+|++|+++|+||+|++++|+||||||+||+|+++|||+||+++|++|+++
T Consensus 9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~ 87 (174)
T 1x6o_A 9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST 87 (174)
T ss_dssp -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence 67754 6899 99999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CceecceEEeeeEEEEEeeCC------CcEEEecCCCCeeeeccCCchh-hHHHHHHhhccCCCeEEEEEEeeCCEEEEE
Q 031432 79 HNCDVPHVTRTDYQLIDISED------GFVSLLTENGNTKDDLRLPTDE-NLLSQIKDGFESGKDLVVSVQCAMGEEQIN 151 (159)
Q Consensus 79 ~~ve~~~v~~~~~qyly~d~~------~~~~fMD~etyeq~~i~l~~~~-~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~ 151 (159)
+++++|.|++++|||||+|++ +.|+|||++||+|++|++|+ + .|+++|..||++|++|.|++|++||+|+|+
T Consensus 88 ~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~~l~~p~-~~~lgd~i~~~l~eg~~v~V~~~~~mG~e~i~ 166 (174)
T 1x6o_A 88 HNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPP-DPALATQIKEQFDSGKDVLVVVVSAMGTEQVL 166 (174)
T ss_dssp SEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCS-CHHHHHHHHHHHHTTCCEEEEEEEETTEEEEE
T ss_pred CEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEEEeeCCc-hhhHHHHHHHHhhCCCEEEEEEEeeCCeEEEE
Confidence 999999999999999999964 39999999999998888898 6 899998899999999999999999999999
Q ss_pred EEeccCCC
Q 031432 152 ALKDIGPK 159 (159)
Q Consensus 152 ~~k~~~~~ 159 (159)
++|++++|
T Consensus 167 ~~k~~~~~ 174 (174)
T 1x6o_A 167 QTKNAAEK 174 (174)
T ss_dssp EEEECCC-
T ss_pred EEEeccCC
Confidence 99999876
No 3
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-54 Score=337.00 Aligned_cols=154 Identities=55% Similarity=0.939 Sum_probs=137.7
Q ss_pred CCccccccccccCCCcceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCc
Q 031432 1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80 (159)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ 80 (159)
|||++|+|+ +++|++|.|+||+|++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++
T Consensus 11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k 89 (167)
T 3er0_A 11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN 89 (167)
T ss_dssp ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence 899999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecceEEeeeEEEEEeeCCCcEEEec--CCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEeccCC
Q 031432 81 CDVPHVTRTDYQLIDISEDGFVSLLT--ENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGP 158 (159)
Q Consensus 81 ve~~~v~~~~~qyly~d~~~~~~fMD--~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~~~ 158 (159)
+++|.|++++|||||+| |+.|+||| .++|+| +.||+ +.|+++++.||++|++|.|++|++||+|+|+++|+.++
T Consensus 90 ve~~~ver~~~QyLY~d-g~~~~FMD~~~etyeq--i~l~~-~~lgd~i~~~l~eg~~v~V~~~~~mg~e~i~~~k~~~~ 165 (167)
T 3er0_A 90 MEVPVVKRNEYQLLDID-DGFLSLMNMDGDTKDD--VKAPE-GELGDSLQTAFDEGKDLMVTIISAMGEEAAISFKEAAR 165 (167)
T ss_dssp EEECCCCEEEEECCCCT-TTTCCCCCSSSCCCSC--CCCCC-SSHHHHHHHTTSSCCCCEEEEEEETTEEEEEEECCCCC
T ss_pred cccceEEEeeEEEEEEc-CCEEEEEeCCCCeeEE--EEcCH-HHHHHHHHHHhhCCCEEEEEEEhhCCcEEEEEEEecCC
Confidence 99999999999999997 58999999 789998 66798 79999999999999999999999999999999999876
Q ss_pred C
Q 031432 159 K 159 (159)
Q Consensus 159 ~ 159 (159)
+
T Consensus 166 ~ 166 (167)
T 3er0_A 166 T 166 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=100.00 E-value=4e-51 Score=310.89 Aligned_cols=138 Identities=56% Similarity=0.994 Sum_probs=128.5
Q ss_pred cceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEE
Q 031432 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (159)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly 95 (159)
+|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|+||+|++++++|+|++++|||||
T Consensus 1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly 80 (138)
T 3cpf_A 1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEec
Q 031432 96 ISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKD 155 (159)
Q Consensus 96 ~d~~~~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~ 155 (159)
+| |+.|+|||++||+|++|+||+ +.|+++++.||+||++|.|++|++||+|+|+++|.
T Consensus 81 ~d-g~~~~fMD~etyeq~~l~l~~-~~lgd~~~~~l~eg~~v~V~~~~~~g~e~~~~~k~ 138 (138)
T 3cpf_A 81 IQ-DGYLSLLQDSGEVREDLRLPE-GDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIKA 138 (138)
T ss_dssp EE-TTEEEEECTTSCEECCSBCCS-HHHHHHHHHHHHHTCCCEEEEEEETTEEEEEEEC-
T ss_pred ec-CCEEEEEcCCCCeEeeecCCH-HHHHHHHHHHhhCCCEEEEEEEhhCCcEEEEEEeC
Confidence 98 589999999999998888998 79999988999999999999999999999999984
No 5
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=1.1e-46 Score=286.40 Aligned_cols=136 Identities=26% Similarity=0.443 Sum_probs=126.8
Q ss_pred cceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEE
Q 031432 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (159)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly 95 (159)
.|.|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|++++++++|+|++++|||||
T Consensus 1 ~~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY 80 (138)
T 1iz6_A 1 MGDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIA 80 (138)
T ss_dssp -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred CCceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEecc
Q 031432 96 ISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDI 156 (159)
Q Consensus 96 ~d~~~~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~ 156 (159)
.| |+.|+|||++||+|++|++|+ +.|++ ...||++|+. |.++.+||+|+|+++|+.
T Consensus 81 ~d-g~~~~fMD~etyeq~~l~~~~-~~lgd-~~~~l~e~~~--V~v~~~~G~~~i~~~k~~ 136 (138)
T 1iz6_A 81 IT-PDTVQIMDMETYETFEVPIDT-GVADE-IRDQLKEGIN--VEYWETLGRIKIMRIKGE 136 (138)
T ss_dssp EC-SSEEEEECTTTCCEEEEEHHH-HBCGG-GTTTCCTTCE--EEEEEETTEEEEEEETTC
T ss_pred eC-CCEEEEEeCCCCceEEeeCCH-HHHHH-HHHhCCCCCE--EEEEEECCcEEEEEEeec
Confidence 98 589999999999998887788 78887 5799999965 555689999999999975
No 6
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=3e-44 Score=272.33 Aligned_cols=129 Identities=29% Similarity=0.507 Sum_probs=119.8
Q ss_pred eeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeC
Q 031432 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE 98 (159)
Q Consensus 19 t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~ 98 (159)
|+|+++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|++++++|+|++++|||||.|
T Consensus 6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~d- 84 (136)
T 1bkb_A 6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVS- 84 (136)
T ss_dssp CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEEC-
T ss_pred EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEec-
Confidence 9999999999999999999999999999999999889999999999999999999999999999999999999999998
Q ss_pred CCcEEEecCCCCeeeeccCCchhh-HHHHHHhhccCCCeEEEEEEeeCCEEEEEEEe
Q 031432 99 DGFVSLLTENGNTKDDLRLPTDEN-LLSQIKDGFESGKDLVVSVQCAMGEEQINALK 154 (159)
Q Consensus 99 ~~~~~fMD~etyeq~~i~l~~~~~-l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k 154 (159)
|+.|+|||++||+|++| |. +. +++. ..||+||+.|.| +.++|+++|+++|
T Consensus 85 g~~~~fMD~etyeq~~l--~~-~~~~gd~-~~~l~e~~~v~v--~~~~g~~~~~~~k 135 (136)
T 1bkb_A 85 GDVIQLMDMRDYKTIEV--PM-KYVEEEA-KGRLAPGAEVEV--WQILDRYKIIRVK 135 (136)
T ss_dssp SSEEEEEETTTCCEEEE--EG-GGBCHHH-HTTCCTTCEEEE--EEETTEEEEEEEC
T ss_pred CCEEEEEeCCCCeEEEe--cc-ccchhHH-HhhCCCCCEEEE--EEECCEEEEEEec
Confidence 58999999999999765 66 56 7765 699999976555 5779999999998
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=100.00 E-value=6.4e-43 Score=265.14 Aligned_cols=131 Identities=31% Similarity=0.508 Sum_probs=118.3
Q ss_pred cceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEE
Q 031432 16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID 95 (159)
Q Consensus 16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly 95 (159)
+|.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.++++++||||
T Consensus 5 m~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly 84 (136)
T 2eif_A 5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLA 84 (136)
T ss_dssp CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEE
T ss_pred EEeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEecc
Q 031432 96 ISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDI 156 (159)
Q Consensus 96 ~d~~~~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~ 156 (159)
.| |+.|+|||++||||++|+.| ++. .. |++|+. |.++.+||+++|+++|++
T Consensus 85 ~d-g~~~~fMD~etyeq~~l~~~-----gd~-~~-l~e~~~--v~v~~~~G~~~i~~~k~~ 135 (136)
T 2eif_A 85 IM-GDMVQIMDLQTYETLELPIP-----EGI-EG-LEPGGE--VEYIEAVGQYKITRVIGG 135 (136)
T ss_dssp EE-TTEEEEEETTTCCEEEEECC-----SCC-TT-CSTTCE--EEEEEETTEEEEEEEC--
T ss_pred ec-CCEEEEEeCCCceEEEecCC-----Cch-hh-CCCCCE--EEEEEECCEEEEEEEEec
Confidence 98 58999999999999887554 233 46 889966 555688999999999975
No 8
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=100.00 E-value=5.1e-40 Score=261.62 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=110.4
Q ss_pred ceeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEe
Q 031432 17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI 96 (159)
Q Consensus 17 ~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~ 96 (159)
|+-+++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+++++++.|+|++++|||||.
T Consensus 2 ~~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~ 80 (191)
T 3a5z_B 2 SHMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYN 80 (191)
T ss_dssp ----CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEE
T ss_pred CccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEe
Confidence 344679999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEe
Q 031432 97 SEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQC 143 (159)
Q Consensus 97 d~~~~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~ 143 (159)
|| +.|+|||+|||||+. ||. +.+++. ..||+||++|.|++|+
T Consensus 81 dg-d~~~FMD~etyeQ~~--l~~-~~lgd~-~~~l~e~~~v~v~~~~ 122 (191)
T 3a5z_B 81 DG-EFWHFMNNETFEQLS--ADA-KAIGDN-AKWLLDQAECIVTLWN 122 (191)
T ss_dssp CS-SCEEEECTTTCCEEE--ECH-HHHCTT-TTTCCSSEECEEEEET
T ss_pred CC-CEEEEeeCCCCeEEE--ccH-HHhhhH-HhhcCCCCEEEEEEEC
Confidence 85 789999999999965 598 788887 4999999998888874
No 9
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=100.00 E-value=2.2e-39 Score=256.64 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=109.2
Q ss_pred EEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCC
Q 031432 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (159)
Q Consensus 21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~ 100 (159)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|++|+|+++++.|+|++++|||||.|| +
T Consensus 1 mi~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dg-d 78 (184)
T 1ueb_A 1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEG-E 78 (184)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEET-T
T ss_pred CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCC-C
Confidence 58999999999999999999999999999999 999999999999999999999999999999999999999999984 8
Q ss_pred cEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEeeCCE
Q 031432 101 FVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGE 147 (159)
Q Consensus 101 ~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~~~G~ 147 (159)
.|+|||++||||+. ||. +.+++. .||+||++|.|++| +|+
T Consensus 79 ~~~FMD~etyeq~~--l~~-~~lgd~--~~L~eg~~v~v~~~--~g~ 118 (184)
T 1ueb_A 79 EMVFMDLETYEQFA--VPR-SRVVGA--EFFKEGMTALGDMY--EGQ 118 (184)
T ss_dssp EEEEEETTTCCEEE--EEG-GGBTTG--GGCCTTCEEEEEEE--TTE
T ss_pred EEEEeeCCCceeEE--cCH-HHcChh--hhcCCCCEEEEEEE--CCE
Confidence 89999999999965 587 688876 99999998777665 553
No 10
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=100.00 E-value=1.1e-38 Score=254.00 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=111.1
Q ss_pred EEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCC
Q 031432 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (159)
Q Consensus 21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~ 100 (159)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.+++++|||||.| ++
T Consensus 6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~d-gd 83 (191)
T 3tre_A 6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYND-GE 83 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEEC-SS
T ss_pred EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEc-CC
Confidence 78999999999999999999999999999999 99999999999999999999999999999999999999999998 48
Q ss_pred cEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEe
Q 031432 101 FVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQC 143 (159)
Q Consensus 101 ~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~ 143 (159)
.|+|||++||||+. ||+ +.+++. ..||+||+.|.|++|+
T Consensus 84 ~~~FMD~etyEq~~--l~~-~~lgd~-~~~L~eg~~v~v~~~~ 122 (191)
T 3tre_A 84 FWHFMTSENYEQHA--ASK-EAVAEA-KQWLKEEALCMVTMWN 122 (191)
T ss_dssp CEEEEESSSCCEEE--ECH-HHHGGG-GGGCCTTCEEEEEEET
T ss_pred cEEEccCCchHhee--cch-hHhhhH-HhhCCCCCEEEEEEEC
Confidence 89999999999965 598 788877 5999999999999886
No 11
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=100.00 E-value=1.6e-38 Score=256.89 Aligned_cols=120 Identities=16% Similarity=0.171 Sum_probs=108.0
Q ss_pred eeeEEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEee
Q 031432 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDIS 97 (159)
Q Consensus 18 ~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d 97 (159)
-.-|+++++||+|++|+++|+||+|++++|+|||| |+||+|+++|||+||+++|++|+++++++.|+|++++|||||.|
T Consensus 28 rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY~D 106 (215)
T 1yby_A 28 AGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYND 106 (215)
T ss_dssp ---CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEEEE
T ss_pred CCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEEeC
Confidence 34568999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEe
Q 031432 98 EDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQC 143 (159)
Q Consensus 98 ~~~~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~ 143 (159)
| +.|+|||+|||||+. ||. +.+++. ..||+||+.|.|++|+
T Consensus 107 g-d~y~FMD~ETyEQi~--l~~-~~lgd~-~~fLkEg~~v~v~~~~ 147 (215)
T 1yby_A 107 G-DLYYFMDTETFEQLP--LGK-DKIGDA-LKFVKENEIVKVLSHK 147 (215)
T ss_dssp T-TEEEEECTTTCCEEE--EEH-HHHTTT-TTTCCTTCEEEEEEET
T ss_pred C-CEEEEccCCCCeeEE--ecH-HHhhhH-HhhCCCCCEEEEEEEC
Confidence 4 889999999999965 587 788877 4999999998888774
No 12
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=100.00 E-value=7.3e-38 Score=249.19 Aligned_cols=116 Identities=13% Similarity=0.165 Sum_probs=109.7
Q ss_pred EEeccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCC
Q 031432 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG 100 (159)
Q Consensus 21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~ 100 (159)
|+++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|.++++++||||.| ++
T Consensus 4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~d-gd 81 (191)
T 3oyy_A 4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFA-DP 81 (191)
T ss_dssp CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEEC-SS
T ss_pred cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEec-CC
Confidence 78999999999999999999999999999999 78999999999999999999999999999999999999999998 48
Q ss_pred cEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCe--EEEEEEe
Q 031432 101 FVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKD--LVVSVQC 143 (159)
Q Consensus 101 ~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~--v~V~~~~ 143 (159)
.|+||| +||||+. ||. +.+++. ..||+||++ |.|++|+
T Consensus 82 ~~~FMD-etyEq~~--l~~-~~lgd~-~~~L~eg~~~~v~v~~~~ 121 (191)
T 3oyy_A 82 LYVFMD-SEFNQYE--IEK-DDLEGV-LTFIEDGMTDICEAVFYN 121 (191)
T ss_dssp SEEEEE-TTCCEEE--ECG-GGCTTT-GGGCCTTCCCCEEEEEET
T ss_pred EEEEEe-cChhhee--CCh-HHhhhH-HhhCcCCCEeEEEEEEEC
Confidence 899999 9999965 588 788877 599999999 9999986
No 13
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=100.00 E-value=2.1e-35 Score=231.19 Aligned_cols=139 Identities=29% Similarity=0.537 Sum_probs=129.3
Q ss_pred ccCCCcceeeEEeccccCCceEEEEcCeEEEEEEeeee-cCCCCCceEEEEEEEECCCCcEEEEEEeCC--------Cce
Q 031432 11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC 81 (159)
Q Consensus 11 ~~~~~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~-kpGKhG~a~vr~k~knl~TG~~~E~t~~s~--------~~v 81 (159)
.++|++|.|+|++|+.||+|.+|+|+|+||+|++++++ ||||| |+.+.|||||+++|..++++ +++
T Consensus 24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm 98 (176)
T 1khi_A 24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM 98 (176)
T ss_dssp ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence 68999999999999999999999999999999999999 89998 89999999999999999999 899
Q ss_pred ecceEEeeeEEEEEeeCCCcEEEecCCCCeeeeccCCchhhHHHHHHhhccCCCe-EEEEEEeeCCEEEEEEEeccC
Q 031432 82 DVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKD-LVVSVQCAMGEEQINALKDIG 157 (159)
Q Consensus 82 e~~~v~~~~~qyly~d~~~~~~fMD~etyeq~~i~l~~~~~l~~~~~~~l~eg~~-v~V~~~~~~G~e~v~~~k~~~ 157 (159)
++|.|. +||+|.++ |+++.+||+++|++++|+||.+++|+.+++..|++|.+ +.|++|++||+|+|+++|+++
T Consensus 99 ~VPvVk--~yQlldI~-dg~lsLMd~~G~~k~dl~lp~~~~l~~~i~~~f~~G~~~~~V~v~~amG~e~iv~~K~~~ 172 (176)
T 1khi_A 99 LGPVFK--QYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRLQKAFESGRGSVRVLVVSDHGREMAVDMKVVH 172 (176)
T ss_dssp EEECCE--EEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHHHHHHTTTGGGEEEEEEEETTEEEEEEEEECC
T ss_pred ccceeE--EEEEEEEc-CCeEEEEeCCCCEEeeeEccchHHHHHHHHHHhhCCCceEEEEEEeECCcEEEEEEEecc
Confidence 999996 99999997 69999999999999999999645799999999999987 559999999999999999875
No 14
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=80.38 E-value=3.8 Score=29.52 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=43.4
Q ss_pred eccccCCceEEEEc-----CeEEEEEEeeeec---CCCCCceEEEEEEEECCCCcEEEEEEeCCC-ceecceEEee
Q 031432 23 QAGTIRKNGYIVIK-----GRPCKVVEVSTSK---TGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTRT 89 (159)
Q Consensus 23 ~~~~ikkG~~i~~~-----g~p~~Vve~~~~k---pGKhG~a~vr~k~knl~TG~~~E~t~~s~~-~ve~~~v~~~ 89 (159)
...++++|+.|.+. |...++.-++-.- -|+ |-. -.+.+|++..|--+|.+|+-.. .++...|.++
T Consensus 15 ~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~-G~~-~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~ 88 (114)
T 3r8s_P 15 DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNR-GLH-SAFTVRKISNGEGVERVFQTHSPVVDSISVKRR 88 (114)
T ss_dssp CCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECC-GGG-CEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred CCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECC-CCC-eEEEEEEecCCccEEEEEecCCCccceEEEEEc
Confidence 45689999998764 6655554443332 233 222 3578999999999999999744 5666666554
No 15
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=77.72 E-value=4.7 Score=30.23 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=42.4
Q ss_pred eccccCCceEEEE-----cCeEEEEEEeeeec---CCCCCceEEEEEEEECCCCcEEEEEEeCCC-ceecceEEee
Q 031432 23 QAGTIRKNGYIVI-----KGRPCKVVEVSTSK---TGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTRT 89 (159)
Q Consensus 23 ~~~~ikkG~~i~~-----~g~p~~Vve~~~~k---pGKhG~a~vr~k~knl~TG~~~E~t~~s~~-~ve~~~v~~~ 89 (159)
...++++|+.|.+ +|...+|--++-+- -|+ |-. -.+.+|++..|--+|.+|+... .++...|.++
T Consensus 18 diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~-Gl~-~tFtVRkis~gvGVEr~Fpl~SP~I~~IeVvrr 91 (146)
T 3v2d_T 18 DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRN-GFN-TTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQR 91 (146)
T ss_dssp CCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECC-GGG-CEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred cCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECC-CCC-eEEEEEEecCCccEEEEEecCCCccceEEEEec
Confidence 4568999998875 45544443343221 133 222 3578999999999999999744 5666666554
No 16
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=72.94 E-value=12 Score=26.06 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=23.3
Q ss_pred EEEEEEECCCCcEEEEEEeCCC-ceecceEE
Q 031432 58 CHFVGIDIFNGKKLEDIVPSSH-NCDVPHVT 87 (159)
Q Consensus 58 vr~k~knl~TG~~~E~t~~s~~-~ve~~~v~ 87 (159)
-.+.+|++..|--+|.+|+-.. .++...|.
T Consensus 40 ~tftvRki~~gvGVEr~fpl~SP~I~~IeV~ 70 (98)
T 2ftc_K 40 ATFILRNVIEGQGVEICFELYNPRVQEIQVV 70 (98)
T ss_pred cEEEEEEeccCceEEEEEecCCCceeEEEEE
Confidence 4689999999999999999743 45555554
No 17
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=65.28 E-value=8 Score=29.54 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=42.5
Q ss_pred eccccCCceEEEEc-----CeEEEEEEeeee---cCCCCCceEEEEEEEECCCCcEEEEEEeCCC-ceecceEEee
Q 031432 23 QAGTIRKNGYIVIK-----GRPCKVVEVSTS---KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH-NCDVPHVTRT 89 (159)
Q Consensus 23 ~~~~ikkG~~i~~~-----g~p~~Vve~~~~---kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~-~ve~~~v~~~ 89 (159)
...++++|+.|.+. |...++--++-+ +-|+ |-. -.+.+|++..|--+|.+|+-.. .++...|.++
T Consensus 23 diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~-Gl~-sTFTVRkis~GvGVER~FplhSP~I~kIEVvrr 96 (166)
T 2zjr_M 23 QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS-GSR-KSFTVRKISFGEGVERVFPFASPLVNQVTIVER 96 (166)
T ss_dssp CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCC-GGG-CEEEEEEEETTEEEEEEEETTCTTEEEEEEEEC
T ss_pred CCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCC-CCC-cEEEEEEecCCeeEEEEEecCCCccceEEEEec
Confidence 45689999998764 443333333222 2233 322 4689999999999999999754 5666666544
No 18
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=59.32 E-value=12 Score=24.39 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=23.9
Q ss_pred CCceEEEEEEEECCCCcEEEEEEeCCCceecc
Q 031432 53 HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP 84 (159)
Q Consensus 53 hG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~ 84 (159)
|+...+++.+| +.+|+.+..+|.+.+.+..+
T Consensus 3 ~~~~~~~i~iR-lpdG~r~~~~F~~~~tl~~v 33 (84)
T 3qx1_A 3 HMEPVSKLRIR-TPSGEFLERRFLASNKLQIV 33 (84)
T ss_dssp -CCCEEEEEEE-CTTSCEEEEEEETTSBHHHH
T ss_pred CCCCeEEEEEE-CCCCCEEEEEeCCCCCHHHH
Confidence 44556777777 67899999999999998743
No 19
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=58.15 E-value=18 Score=23.59 Aligned_cols=43 Identities=12% Similarity=0.328 Sum_probs=28.2
Q ss_pred CCeeeeccCCchhhHHHHHHhhccCCCeEEEEEEeeCCEEEEEEEecc
Q 031432 109 GNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDI 156 (159)
Q Consensus 109 tyeq~~i~l~~~~~l~~~~~~~l~eg~~v~V~~~~~~G~e~v~~~k~~ 156 (159)
+-++++|.+|. ++.+++ -+++|+++.+.+- .-+.+.|+.+|-+
T Consensus 21 g~etyYInIPa--eI~kaL--gIk~gD~fel~ve-~kdgeIvLcykRV 63 (68)
T 3o27_A 21 GHTTFYLLIPK--DIAEAL--DIKPDDTFILNME-QKDGDIVLSYKRV 63 (68)
T ss_dssp -CCCEEEEECH--HHHHHT--TCCTTCCEEEEEE-EETTEEEEEEEEC
T ss_pred CceEEEEeCcH--HHHHHh--CCCCCCEEEEEEe-cCCCeEEEEehhh
Confidence 45666788897 777654 4688988888654 4455666666653
No 20
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=54.00 E-value=4.2 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.9
Q ss_pred cCCceEEEEcCeEEEEEEeeeecC
Q 031432 27 IRKNGYIVIKGRPCKVVEVSTSKT 50 (159)
Q Consensus 27 ikkG~~i~~~g~p~~Vve~~~~kp 50 (159)
-+.|+.|.++|..|+++.-.++.|
T Consensus 8 Y~~Gd~Vty~G~~Y~c~q~hts~~ 31 (45)
T 1ed7_A 8 YTAGQLVTYNGKTYKCLQPHTSLA 31 (45)
T ss_dssp ECTTCCEEETTEEECBCSCEEECT
T ss_pred EcCCCEEEECCeEEEEEecCcCcC
Confidence 468999999999999998777644
No 21
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=52.07 E-value=18 Score=27.14 Aligned_cols=56 Identities=9% Similarity=0.032 Sum_probs=36.6
Q ss_pred cccccccCCCcceeeEEeccccCCceEEEEcCe---EEEEEEeeeecC--------CCCCceEEEEEE
Q 031432 6 HHFESKADAGASKTFPQQAGTIRKNGYIVIKGR---PCKVVEVSTSKT--------GKHGHAKCHFVG 62 (159)
Q Consensus 6 ~~~~~~~~~~~~~t~~i~~~~ikkG~~i~~~g~---p~~Vve~~~~kp--------GKhG~a~vr~k~ 62 (159)
-.|+|++.. .-..-.+..=+||+|+.|.+++- ||.|+.+.+.-+ --+|++.+.++-
T Consensus 44 VrFdDs~~~-~V~~~~vk~LeLRiGD~VKVd~vpK~~hiVvGf~~~l~~~~~~~~TDi~Gh~tViL~~ 110 (153)
T 2fhd_A 44 VQFDDATMS-TVNSNQIKRFFLKKGDVVQSTRLGKIKHTVVKTFRSTNEQLSLIAVDALNNDMVILAH 110 (153)
T ss_dssp EEETTSCEE-EEETTSEEESCCCTTCEEEETTSTTCCEEEEEEECCCSSCCCGGGCCTTCCCEEEEEE
T ss_pred EEEcCCCCC-ccChhhceeeeeecCCEEEECCCCCccEEEEEecccccccccceeeeecCceEEEEcc
Confidence 357733222 33344566679999999999974 699999874322 234777766554
No 22
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=43.95 E-value=29 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=23.0
Q ss_pred eeEEeccccCCceEEEEc-C-----eEEEEEEeeee
Q 031432 19 TFPQQAGTIRKNGYIVIK-G-----RPCKVVEVSTS 48 (159)
Q Consensus 19 t~~i~~~~ikkG~~i~~~-g-----~p~~Vve~~~~ 48 (159)
...+.|++|++|+.|... | .|-+|++++..
T Consensus 84 ~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~ 119 (145)
T 1at0_A 84 LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV 119 (145)
T ss_dssp EEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE
T ss_pred EEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE
Confidence 467899999999988654 3 47778777665
No 23
>2f9h_A PTS system, IIA component; alpha-beta structure, beta-barrel, dimer, structural genomic protein structure initiative; 1.57A {Enterococcus faecalis} SCOP: b.161.1.1
Probab=43.09 E-value=23 Score=25.73 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=19.6
Q ss_pred cccCCceEEEEcCeEEEEEEe
Q 031432 25 GTIRKNGYIVIKGRPCKVVEV 45 (159)
Q Consensus 25 ~~ikkG~~i~~~g~p~~Vve~ 45 (159)
.+|++|+.+.+++.-|+|..+
T Consensus 53 ~~i~~Gd~l~i~~~~Y~ItaV 73 (129)
T 2f9h_A 53 VTLAEGDHLKIGDTNYTITKV 73 (129)
T ss_dssp CCCCTTCEEEETTEEEEEEEE
T ss_pred CCcCCCCEEEECCEEEEEEEE
Confidence 589999999999999999976
No 24
>1k0h_A Gpfii; twisted beta-sandwich, viral protein; NMR {Enterobacteria phage lambda} SCOP: b.106.1.2 PDB: 2kx4_A
Probab=41.34 E-value=5.1 Score=28.65 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=24.6
Q ss_pred eccccCCceEEEEcCeEEEEEEeeeecCCCCCceE
Q 031432 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAK 57 (159)
Q Consensus 23 ~~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~ 57 (159)
.+..+++|+.|.++|+.|.|.+ ..|.-+|.+.
T Consensus 71 D~~~~~~gD~v~i~g~~y~V~~---v~PDg~G~~~ 102 (117)
T 1k0h_A 71 EVRQLRRGDTLTIGEENFWVDR---VSPDDGGSCH 102 (117)
T ss_dssp STTTCCSSCEEEETTTCEEBCC---CCSSSCCCTT
T ss_pred ccCCCCCCCEEEECCeEEEEee---eccCCCCeEE
Confidence 3456789999999999999987 4675445554
No 25
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=33.66 E-value=1.1e+02 Score=20.55 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=31.6
Q ss_pred EeccccCCceEEEEcCeEEEEEEeeeec--CCCCC--ceEEEEEEEECCCCcEEEEEEeC
Q 031432 22 QQAGTIRKNGYIVIKGRPCKVVEVSTSK--TGKHG--HAKCHFVGIDIFNGKKLEDIVPS 77 (159)
Q Consensus 22 i~~~~ikkG~~i~~~g~p~~Vve~~~~k--pGKhG--~a~vr~k~knl~TG~~~E~t~~s 77 (159)
.+.++|++|..+.+ .++|.+....+ ..|.| ..+..+.+.| .||.+. -++-.
T Consensus 8 ~~I~~L~~g~~v~i---~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D-~TG~I~-~t~w~ 62 (115)
T 2k50_A 8 DTISKLEEGAETPV---TGRVMKISSPRTFTTRKGREGKLANVIIAD-DTGELR-AVFWT 62 (115)
T ss_dssp CCTTTCCTTCEEEE---EEEEEEECCCEECCCTTSSCCEEEEEEEEE-TTEEEE-EEEET
T ss_pred EEHHHCCCCCEeEE---EEEEEECCCceEEEcCCCCEEEEEEEEEEe-CCCeEE-EEEeC
Confidence 46889999988744 56666662222 12224 4677788888 788554 55443
No 26
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=33.61 E-value=36 Score=24.66 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=23.6
Q ss_pred EEeccccCCceEEEEcCeEEEEEEee
Q 031432 21 PQQAGTIRKNGYIVIKGRPCKVVEVS 46 (159)
Q Consensus 21 ~i~~~~ikkG~~i~~~g~p~~Vve~~ 46 (159)
.+...||..|..|.+.|..+.|+++.
T Consensus 83 ~~~~~Dl~VG~~v~i~gR~f~I~dcD 108 (133)
T 2z14_A 83 FYTVYHFNVGTEVVFYGRTFKIYDCD 108 (133)
T ss_dssp BCCGGGCCTTCEEEETTEEEEEEEEC
T ss_pred ccCHHHcccCCEEEEecEEEEEEeCC
Confidence 36889999999999999999999974
No 27
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=33.44 E-value=1.3e+02 Score=21.82 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=7.0
Q ss_pred ccCCceEEEEcCeE
Q 031432 26 TIRKNGYIVIKGRP 39 (159)
Q Consensus 26 ~ikkG~~i~~~g~p 39 (159)
+++.|+.+-+..-|
T Consensus 50 ~i~~GN~lpL~~iP 63 (136)
T 2ftc_B 50 AAREGDAHPLGALP 63 (136)
T ss_pred ccCcCcEEEecccC
Confidence 44555555555444
No 28
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Probab=33.11 E-value=68 Score=26.36 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=38.8
Q ss_pred CCCcceeeEEecc--------ccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCC
Q 031432 13 DAGASKTFPQQAG--------TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67 (159)
Q Consensus 13 ~~~~~~t~~i~~~--------~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~T 67 (159)
....+.++.++.. -|.++..|.++|+.|+|..++...-| |...+.+.+++++-
T Consensus 34 Ng~~~LsF~i~~~~~n~~~~~~l~~e~~I~~~~q~YvI~~~~~~~~g--~~~~~~V~A~hi~~ 94 (342)
T 3gs9_A 34 NEMWSIEFXVAQTPKNAHCYSFLDYESSVYFRGQEFVVKQLSHDAVG--KTLSKDIRAPHIYY 94 (342)
T ss_dssp TTEEEEEEEEEEC-----CCCCSSTTCEEEETTEEEECCEECCBC-----CEEEEEEEEBGGG
T ss_pred CCcEEEEEEEecCccchHHHHhhCcCCEEEECCcEEEEEEeEeecCC--CEEEEEEEEEEeee
Confidence 3445666666654 49999999999999999998777555 34667888888764
No 29
>1p6p_A Fatty acid-binding protein, liver; beta barrel, lipid binding protein; 2.50A {Bufo arenarum} SCOP: b.60.1.2
Probab=32.03 E-value=1.1e+02 Score=21.33 Aligned_cols=47 Identities=9% Similarity=0.059 Sum_probs=36.7
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEEe
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~fM 105 (159)
.+.++...+.+..+.+|..++.++...++-+.++-++.-+|+.++..
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 92 (125)
T 1p6p_A 46 EFVVTSKTPKQTHSNSFTVGKESEITSMDGKKIKVTVQLEGGKLICK 92 (125)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEECTTTSCCEEEEEEECSSEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEEcCCCCEEEEEEEEECCEEEEE
Confidence 46667777788899999999999998888777777776545776664
No 30
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=31.50 E-value=1.2e+02 Score=21.22 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=37.1
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEEe
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~fM 105 (159)
.+.++...+.+..+.+|..++.++...++-+.++-++.-+|+.++..
T Consensus 46 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 92 (125)
T 1mvg_A 46 DFVVTSKTPRQTVTNSFTLGKEADITTMDGKKLKCTVHLANGKLVTK 92 (125)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEETTTEEEEEEEEECSSEEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEeeEEEEEECCEEEEe
Confidence 46677788888999999999999998888777777776445776664
No 31
>1ifc_A Intestinal fatty acid binding protein; lipid-binding protein; 1.19A {Rattus norvegicus} SCOP: b.60.1.2 PDB: 1ael_A 1icm_A* 1ifb_A 1ure_A* 2ifb_A* 3akn_A* 1icn_A* 1t8v_A 1dc9_A 1a57_A 1kzx_A 1kzw_A 3akm_A* 3ifb_A 1sa8_A
Probab=29.29 E-value=1.3e+02 Score=21.24 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=34.9
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|..++.++...++-+.++-++.-+|+.++.
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 92 (132)
T 1ifc_A 47 KFTVKESSNFRNIDVVFELGVDFAYSLADGTELTGTWTMEGNKLVG 92 (132)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 4667777888899999999999998888777666666533466555
No 32
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=28.36 E-value=49 Score=22.26 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=15.5
Q ss_pred eccccCCceEEEEc---CeEEEE
Q 031432 23 QAGTIRKNGYIVIK---GRPCKV 42 (159)
Q Consensus 23 ~~~~ikkG~~i~~~---g~p~~V 42 (159)
..-+|++|++|.++ ++|..|
T Consensus 36 ell~L~~GdVI~Ld~~~~~~v~v 58 (96)
T 1o6a_A 36 RVLEMIHGSIIELDKLTGEPVDI 58 (96)
T ss_dssp HHHHCCTTCEEEEEEETTCCEEE
T ss_pred HHhCCCCCCEEEeCCCCCCcEEE
Confidence 34578999999999 567666
No 33
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=27.59 E-value=1.2e+02 Score=22.28 Aligned_cols=16 Identities=6% Similarity=0.275 Sum_probs=14.1
Q ss_pred EEeccccCCceEEEEc
Q 031432 21 PQQAGTIRKNGYIVIK 36 (159)
Q Consensus 21 ~i~~~~ikkG~~i~~~ 36 (159)
.+.|++||+|+.|.+-
T Consensus 105 ~~~A~eLk~GD~v~v~ 120 (185)
T 2lcj_A 105 EKRAFEVKEGDKVLVS 120 (185)
T ss_dssp EEEGGGCCTTCEEEEC
T ss_pred EEEHHHCCCCCEEEEc
Confidence 6899999999999874
No 34
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=27.10 E-value=1.7e+02 Score=20.71 Aligned_cols=46 Identities=9% Similarity=-0.104 Sum_probs=34.8
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.=+|+.++.
T Consensus 51 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 96 (135)
T 1b56_A 51 NLTIKTESTLKTTQFSCTLGEKFEETTADGRKTQTVCNFTDGALVQ 96 (135)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCeEEEEEEEECCEEEE
Confidence 4667777888899999999999998888877666666533466554
No 35
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=26.93 E-value=71 Score=20.85 Aligned_cols=36 Identities=8% Similarity=0.116 Sum_probs=24.3
Q ss_pred ccccCCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEE
Q 031432 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI 63 (159)
Q Consensus 24 ~~~ikkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~k 63 (159)
..+|.+...|.++|+.|.+..-+...+|. .|++..+
T Consensus 24 ~~~i~~~G~V~i~Ge~W~A~s~~~i~~G~----~V~Vv~v 59 (80)
T 2exd_A 24 VKIAEDHYLVEVEGDKWIAYSDEKLSLGD----RVMVVDV 59 (80)
T ss_dssp EECCTTCEEEEETTEEEEECCSSCCCTTC----EEEEEEE
T ss_pred eEecCCCEEEEECCEEEEEEECCccCCCC----EEEEEEE
Confidence 34566677899999999997545455554 4555544
No 36
>1o8v_A Fatty acid binding protein homolog; lipid binding protein, hydatid disease, fatty-acid transport; HET: PLM; 1.60A {Echinococcus granulosus} SCOP: b.60.1.2
Probab=26.55 E-value=1.1e+02 Score=21.70 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=35.6
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.-+|+.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1o8v_A 50 KYKMRSESTFKTTECSFKLGEKFKEVTPDSREVASLITVENGVMKH 95 (134)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 4667788888999999999999998888877776666543466655
No 37
>3ppt_A Sodium-calcium exchanger; fatty acid transporter, lipid binding proteins, squid nerve, regulatory factor, beta-sandwich, fatty acid; HET: PAM; 1.28A {Loligo pealei} SCOP: b.60.1.0 PDB: 3pp6_A*
Probab=25.39 E-value=1.8e+02 Score=20.61 Aligned_cols=46 Identities=4% Similarity=-0.172 Sum_probs=34.5
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-+..-+|+.++-
T Consensus 48 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (133)
T 3ppt_A 48 SWSIKTSTTFKTTDISFTIGQEFDETTGDGRKIKTTCKIDGNAMIQ 93 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEeCCccEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 4667777788889999999999998877766666666543466654
No 38
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=25.38 E-value=1.6e+02 Score=20.77 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=35.3
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|..++.++...++-+.++-++.-+|+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 93 (132)
T 1mdc_A 48 SYSNTSTGGGGAKTVSFKSGVEFDDVIGAGDSVKSMYTVDGNVVTH 93 (132)
T ss_dssp EEEEEEESTTCCEEEEECTTCCEEEEETTTEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceeEEEEeCCCcEEEECCCCCEEEEEEEEECCEEEE
Confidence 4667777888889999999999998888877776666643466655
No 39
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=25.33 E-value=65 Score=20.46 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.9
Q ss_pred cccCCceEEEEcCeEEEEE
Q 031432 25 GTIRKNGYIVIKGRPCKVV 43 (159)
Q Consensus 25 ~~ikkG~~i~~~g~p~~Vv 43 (159)
..++.|+.|.++|+|+.|+
T Consensus 60 ~~v~~gd~I~v~~~~~~~~ 78 (79)
T 1p9k_A 60 CKIVAGQTVSFAGHSVQVV 78 (79)
T ss_dssp CCCCSSEEEEETTEEEEEE
T ss_pred CCCCCCCEEEECCEEEEEe
Confidence 3578899999999998775
No 40
>2rcq_A CRBP-II, retinol-binding protein II, cellular; cellular retinol binding protein II, lipid-binding protein, X-RAY, cytoplasm, transport, vitamin A; HET: TLA; 1.20A {Homo sapiens} PDB: 2rct_A* 1b4m_A 1eii_A* 1opa_A 1opb_A* 1kqw_A* 1kqx_A
Probab=24.51 E-value=1.8e+02 Score=20.80 Aligned_cols=46 Identities=7% Similarity=-0.033 Sum_probs=34.4
Q ss_pred EEEEEECCCCcEEEEEEeCCCceec--ceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~--~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++. ..++-+.++-++.-+|+.++.
T Consensus 52 ~~tikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 99 (141)
T 2rcq_A 52 NFKTKTTSTFRNYDVDFTVGVEFDEYTKSLDNRHVKALVTWEGDVLVC 99 (141)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCeEEEEEEECCCeEEeeeecCCCCEEEEEEEEeCCEEEE
Confidence 4567777888899999999999999 777766666555533466665
No 41
>2qo4_A Liver-basic fatty acid binding protein; liver bIle acid-binding protein, BABP, fatty acid-binding PR FABP, cholic acid cholate, bIle acid; HET: CHD; 1.50A {Danio rerio} PDB: 2qo6_A* 2qo5_A* 2ftb_A* 2ft9_A*
Probab=24.11 E-value=1.2e+02 Score=21.20 Aligned_cols=47 Identities=11% Similarity=0.125 Sum_probs=35.9
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEEe
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~fM 105 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.-+|+.++..
T Consensus 47 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~~ 93 (126)
T 2qo4_A 47 DFTITSKTPGKTVTNSFTIGKEAEITTMDGKKLKCIVKLDGGKLVCR 93 (126)
T ss_dssp EEEEEEEETTEEEEEEEETTBEEEEECTTSCEEEEECEEETTEEEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEECCCCCEeEEEEEEECCEEEEE
Confidence 35666777788899999999999988888777776666435777664
No 42
>1ftp_A Muscle fatty acid binding protein; binding protein(fatty acid); 2.20A {Schistocerca gregaria} SCOP: b.60.1.2 PDB: 2flj_A*
Probab=24.05 E-value=1.4e+02 Score=21.06 Aligned_cols=46 Identities=9% Similarity=-0.090 Sum_probs=35.2
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCC-CcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED-GFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.-+| +.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 96 (133)
T 1ftp_A 50 KFKLTSKTAIKNTEFTFKLGEEFDEETLDGRKVKSTITQDGPNKLVH 96 (133)
T ss_dssp EEEEEEECSSCEEEEEEETTCCEEEECTTSCEEEEEEEECSSSEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 46677778888999999999999988888777766666434 55555
No 43
>2a0a_A DER F 13; beta barrel, helix, allergen; NMR {Dermatophagoides farinae} SCOP: b.60.1.2
Probab=23.46 E-value=1.9e+02 Score=20.29 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=35.2
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCC-CcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED-GFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.-++ +.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~~kLv~ 94 (131)
T 2a0a_A 48 QYIFRSLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQ 94 (131)
T ss_dssp CEEEEECCTTSCEEEEECSSCCEEEEETTTEEEEEEEEEETTTEEEE
T ss_pred EEEEEEEcCCeeEEEEEECCCcEEEECCCCCEEEEEEEEeCCCEEEE
Confidence 36677888888999999999999988888776666665334 66655
No 44
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=23.46 E-value=2e+02 Score=20.31 Aligned_cols=46 Identities=11% Similarity=-0.023 Sum_probs=35.6
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecce--EEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPH--VTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~--v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|..++.++... ++-+.++-++.-+|+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~~~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1ggl_A 48 HMTVRTLSTFRNYTVQFDVGVEFEEDLRSVDGRKCQTIVTWEEEHLVC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTSCEEEEETTTTSEEEEEEEEECSSSEEE
T ss_pred EEEEEEEcCCceEEEEeeCCCcEEEEccCCCCcEeeeEEEEECCEEEE
Confidence 456777788888999999999999888 8777777666644566666
No 45
>2f73_A L-FABP, fatty acid-binding protein, liver; structural genomics, structural genomics consortium, SGC, lipid binding protein; 2.50A {Homo sapiens} SCOP: b.60.1.2
Probab=22.79 E-value=1.6e+02 Score=21.46 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=37.0
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCC-CcEEEe
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED-GFVSLL 105 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~-~~~~fM 105 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.-+| +.++..
T Consensus 69 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~egd~kLv~~ 116 (149)
T 2f73_A 69 HFKFTITAGSKVIQNEFTVGEECELETMTGEKVKTVVQLEGDNKLVTT 116 (149)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEECSSSCEEEEECEEETTTEEEEE
T ss_pred EEEEEEEeCCeEEEEEEeCCCcEEEEcCCCCEEEEEEEEeCCCcEEEE
Confidence 46677888889999999999999998888777777776434 666664
No 46
>4a60_A Fatty acid-binding protein 9 testis lipid-binding protein, TLBP, testis-type fatty...; transport protein; 1.53A {Homo sapiens} PDB: 3nr3_A*
Probab=22.53 E-value=1.7e+02 Score=21.48 Aligned_cols=46 Identities=7% Similarity=-0.140 Sum_probs=35.0
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|..++.++....+-+.++-++.=+|+.++-
T Consensus 71 ~~tikt~st~kt~~~~F~lGeEfee~t~DGrk~Ks~vt~eg~kLv~ 116 (154)
T 4a60_A 71 MMTIRTESSFQDTKISFKLGEEFDETTADNRKVKSTITLENGSMIH 116 (154)
T ss_dssp EEEEEEEETTEEEEEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCcEEeEcCCCCEEEEEEEEECCEEEE
Confidence 3667777788899999999999998877777777666544566654
No 47
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=21.74 E-value=85 Score=20.93 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=21.3
Q ss_pred ccCCCcceeeEE-eccccCCceEEEEcC-----eEEEEEEe
Q 031432 11 KADAGASKTFPQ-QAGTIRKNGYIVIKG-----RPCKVVEV 45 (159)
Q Consensus 11 ~~~~~~~~t~~i-~~~~ikkG~~i~~~g-----~p~~Vve~ 45 (159)
+|....+.+-+. +.+.++.|+.|+--. -+|+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v 43 (88)
T 2eqm_A 3 SGSSGMSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKI 43 (88)
T ss_dssp CCCCSCTTSCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEE
T ss_pred CCcCCcccCCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEE
Confidence 444445544444 568899999996554 34555543
No 48
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=21.67 E-value=80 Score=27.42 Aligned_cols=50 Identities=8% Similarity=-0.066 Sum_probs=35.5
Q ss_pred CCceEEEEcCeEEEEEEeeeecCCCCCceEEEEEEEECCCCcEEEEEEeCCCceecce
Q 031432 28 RKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH 85 (159)
Q Consensus 28 kkG~~i~~~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~TG~~~E~t~~s~~~ve~~~ 85 (159)
..|+.+.+||.++-.+. .||+ .+|+++.|.-.-+.+...+..++.+.++-
T Consensus 181 ~~gd~~lvNG~~~p~~~----v~g~----~~RlRliNas~~~~~~l~i~dg~~~~vIa 230 (488)
T 3od3_A 181 WFGDTLLTNGAIYPQHA----APRG----WLRLRLLNGCNARSLNFATSDNRPLYVIA 230 (488)
T ss_dssp CCCSEEEETTBSSCEEE----EEEE----EEEEEEEECCSSCCEEEEETTCCCEEEEE
T ss_pred CCCCEEEEcCCcCccEe----cCCC----EEEEEEEccCCCceeeeeecCCCeEEEEE
Confidence 35899999998654443 2443 68999999988888877775566655443
No 49
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=21.64 E-value=2.3e+02 Score=20.31 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=32.5
Q ss_pred cCeEEEEEEeeeecCCCCCceEEEEEEEECC-CCcEEEEEEeCCCceecceEEeeeEEEEEee--CCCcEEEecC
Q 031432 36 KGRPCKVVEVSTSKTGKHGHAKCHFVGIDIF-NGKKLEDIVPSSHNCDVPHVTRTDYQLIDIS--EDGFVSLLTE 107 (159)
Q Consensus 36 ~g~p~~Vve~~~~kpGKhG~a~vr~k~knl~-TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d--~~~~~~fMD~ 107 (159)
+|..+..+.|.-.-| ++.+.|++.++.-. +| .-+|.|||.| +-.-+++.|+
T Consensus 67 dG~eH~rm~F~VeG~--~~~G~V~le~~k~~~~~-------------------~~ef~Yl~vDV~g~~Ri~Le~p 120 (127)
T 2ciu_A 67 EGRTHHYMRFHVESK--KKIALVHLEAKESKQNY-------------------QPDFINMYVDVPGEKRYYLIKP 120 (127)
T ss_dssp TSCEEEEEEEEEECS--SCEEEEEEEEECCSSCS-------------------SCEEEEEEEECTTSCCEEEECC
T ss_pred CCCEEEEEEEEEEcC--CCcEEEEEEEEecCCCC-------------------ceEEEEEEEEeCCCceEEEECC
Confidence 678888887755544 36788888887632 33 2356777777 3235566665
No 50
>1vyf_A SM14, 14 kDa fatty acid binding protein; transport protein; HET: OLA; 1.85A {Schistosoma mansoni} SCOP: b.60.1.2 PDB: 1vyg_A* 2poa_A
Probab=21.54 E-value=1.8e+02 Score=20.60 Aligned_cols=46 Identities=7% Similarity=-0.049 Sum_probs=33.8
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEee-CCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDIS-EDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d-~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.- +++.++.
T Consensus 50 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~~eg~kLv~ 96 (135)
T 1vyf_A 50 KMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQ 96 (135)
T ss_dssp EEEEEEECSSCCEEEEECTTCCEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEEEEEEcCCceEEEEEECCCCEEEECCCCCEEEEEEEEccCCEEEE
Confidence 356677777888999999999999888876666655542 2466655
No 51
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=21.21 E-value=1.3e+02 Score=21.25 Aligned_cols=46 Identities=2% Similarity=-0.110 Sum_probs=34.8
Q ss_pred EEEEEECCCCcEEEEEEeCCCceec--ceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDV--PHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~--~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++. ..++-+.++-++.-+|+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~~~t~dgrk~ks~vt~eg~kLv~ 95 (134)
T 1crb_A 48 HMIIRTLSTFRNYIMDFQVGKEFEEDLTGIDDRKCMTTVSWDGDKLQC 95 (134)
T ss_dssp EEEEEEECSSCCEEEEEETTCCEEEECTTTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCceEEEEEeCCCeeeeeeecCCCCEEEEEEEEECCEEEE
Confidence 4667777888899999999999999 777766666665533466655
No 52
>1eal_A Gastrotropin, ileal lipid binding protein; intracellular lipid binding protein, bIle acid binding, ileal epithelium, fatty acid binding protein; NMR {Sus scrofa} SCOP: b.60.1.2 PDB: 1eio_A* 1o1u_A 1o1v_A*
Probab=21.04 E-value=2.2e+02 Score=19.86 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=35.7
Q ss_pred EEEEEEC-CCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEEe
Q 031432 59 HFVGIDI-FNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLL 105 (159)
Q Consensus 59 r~k~knl-~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~fM 105 (159)
.+.++.. .+.+..+.+|+.++.++...++-+.++-++.-+|+.++..
T Consensus 46 ~~~ikt~~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~~ 93 (127)
T 1eal_A 46 NFTWSQQYPGGHSITNTFTIGKECDIETIGGKKFKATVQMEGGKVVVN 93 (127)
T ss_dssp EEEEEEECSSSCEEEEEEESSSCEEEECSSSCEEEECCEECSSEEEEC
T ss_pred EEEEEEEECCCceEEEEEECCCcEEEECCCCCEEEEEEEEECCEEEEE
Confidence 3556666 7778899999999999998888777777766545666663
No 53
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=20.96 E-value=1.2e+02 Score=21.25 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=25.0
Q ss_pred CCcceeeEEecccc--CCceEEEEcCeEEEEEEeeee
Q 031432 14 AGASKTFPQQAGTI--RKNGYIVIKGRPCKVVEVSTS 48 (159)
Q Consensus 14 ~~~~~t~~i~~~~i--kkG~~i~~~g~p~~Vve~~~~ 48 (159)
+++..|-.+=++.- ++|+.+.++|+-|.|..+++.
T Consensus 49 sG~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vtr~~~~ 85 (102)
T 2pp6_A 49 EGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRF 85 (102)
T ss_dssp ---CEEEEECCSSCCCCTTCEEEETTEEEEEEEEEEE
T ss_pred cCCceEEEEecCCcccCCCCEEEEcCcEEEEEEEEEE
Confidence 44455555545554 569999999999999998877
No 54
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=20.78 E-value=1.4e+02 Score=21.07 Aligned_cols=46 Identities=9% Similarity=-0.070 Sum_probs=34.5
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++...++-+.++-++.-+|+.++.
T Consensus 48 ~~~ikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~~t~eg~kLv~ 93 (131)
T 1fdq_A 48 KVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVH 93 (131)
T ss_dssp EEEEEEECSSCBCCEEECTTCCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEeCCCceEEECCCCCEEEEEEEEECCEEEE
Confidence 4556677778888999999999998888877776666543466655
No 55
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=20.19 E-value=1.3e+02 Score=21.40 Aligned_cols=46 Identities=9% Similarity=-0.103 Sum_probs=33.9
Q ss_pred EEEEEECCCCcEEEEEEeCCCceecceEEeeeEEEEEeeCCCcEEE
Q 031432 59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSL 104 (159)
Q Consensus 59 r~k~knl~TG~~~E~t~~s~~~ve~~~v~~~~~qyly~d~~~~~~f 104 (159)
.+.++...+.+..+.+|+.++.++.-..+-+.++-++.-+++.++.
T Consensus 50 ~~tikt~s~~k~~~~~F~lGeEfee~t~dgrk~ks~vt~eg~kLv~ 95 (133)
T 4a1y_A 50 IITIRTESTFKNTEISFQLGQEFEETTADNRKTKSIVTLQRGSLNQ 95 (133)
T ss_dssp EEEEEEEETTEEEEEEECTTBCEEEECTTCCEEEEEEEEETTEEEE
T ss_pred EEEEEEecCCccEEEEEEcCCcEEEEcCCCCEEEEEEEEcCCEEEE
Confidence 3555666677788999999999998888877777776544566644
Done!