Query 031433
Match_columns 159
No_of_seqs 164 out of 1258
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031433.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031433hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 1E-31 2.2E-36 230.0 13.8 121 7-157 325-447 (519)
2 KOG0328 Predicted ATP-dependen 100.0 2.9E-31 6.4E-36 211.8 11.7 121 7-156 249-371 (400)
3 COG0513 SrmB Superfamily II DN 100.0 1.6E-29 3.4E-34 219.3 13.7 118 10-156 259-378 (513)
4 KOG0330 ATP-dependent RNA heli 100.0 3.2E-29 7E-34 206.5 11.3 114 10-156 290-405 (476)
5 KOG0333 U5 snRNP-like RNA heli 100.0 5.8E-29 1.3E-33 211.0 13.1 111 18-157 511-623 (673)
6 KOG0326 ATP-dependent RNA heli 100.0 1.6E-28 3.5E-33 198.8 8.5 124 5-157 303-428 (459)
7 PRK04837 ATP-dependent RNA hel 99.9 2.4E-27 5.2E-32 200.8 13.4 122 6-156 237-360 (423)
8 KOG0340 ATP-dependent RNA heli 99.9 2.9E-27 6.3E-32 193.2 11.9 119 8-156 239-359 (442)
9 KOG0332 ATP-dependent RNA heli 99.9 1.8E-26 4E-31 189.6 12.8 120 8-156 314-441 (477)
10 PRK10590 ATP-dependent RNA hel 99.9 3.8E-26 8.1E-31 195.4 14.8 122 6-156 227-350 (456)
11 PTZ00110 helicase; Provisional 99.9 3.9E-26 8.5E-31 199.3 14.3 105 24-156 376-482 (545)
12 PRK04537 ATP-dependent RNA hel 99.9 6.3E-26 1.4E-30 199.0 15.2 120 8-156 241-362 (572)
13 PRK11776 ATP-dependent RNA hel 99.9 6.6E-26 1.4E-30 193.8 14.5 118 10-156 228-347 (460)
14 PRK11192 ATP-dependent RNA hel 99.9 1.4E-25 3E-30 190.3 15.3 120 8-156 229-350 (434)
15 KOG0335 ATP-dependent RNA heli 99.9 8.8E-26 1.9E-30 191.4 11.8 123 6-156 311-442 (482)
16 PLN00206 DEAD-box ATP-dependen 99.9 2.3E-25 5E-30 193.4 14.6 106 24-156 366-473 (518)
17 PRK01297 ATP-dependent RNA hel 99.9 8.2E-25 1.8E-29 187.9 15.0 117 10-155 321-439 (475)
18 TIGR00614 recQ_fam ATP-depende 99.9 9.8E-25 2.1E-29 187.4 14.3 116 11-155 213-330 (470)
19 PRK11634 ATP-dependent RNA hel 99.9 1.3E-24 2.8E-29 192.4 14.8 113 15-156 236-350 (629)
20 KOG0336 ATP-dependent RNA heli 99.9 7.2E-25 1.6E-29 182.4 10.5 121 8-156 448-570 (629)
21 KOG0341 DEAD-box protein abstr 99.9 6.2E-25 1.4E-29 181.8 9.3 121 5-156 403-526 (610)
22 KOG0342 ATP-dependent RNA heli 99.9 8.9E-25 1.9E-29 184.3 9.9 112 17-156 322-433 (543)
23 PLN03137 ATP-dependent DNA hel 99.9 4.5E-24 9.8E-29 195.5 14.4 106 22-155 677-784 (1195)
24 PTZ00424 helicase 45; Provisio 99.9 6.3E-24 1.4E-28 177.8 14.1 118 9-155 252-371 (401)
25 PRK11057 ATP-dependent DNA hel 99.9 9.4E-24 2E-28 186.4 14.2 106 22-155 233-340 (607)
26 KOG0343 RNA Helicase [RNA proc 99.9 8.6E-24 1.9E-28 180.7 11.9 127 3-157 292-419 (758)
27 TIGR03817 DECH_helic helicase/ 99.9 2.8E-23 6.2E-28 186.8 12.8 114 10-154 259-382 (742)
28 KOG0345 ATP-dependent RNA heli 99.9 3.2E-23 6.8E-28 174.4 12.0 120 7-155 239-361 (567)
29 KOG0327 Translation initiation 99.9 3E-23 6.6E-28 170.7 10.7 104 25-156 263-368 (397)
30 KOG0338 ATP-dependent RNA heli 99.9 2.9E-23 6.3E-28 176.2 10.2 105 24-156 425-531 (691)
31 KOG0347 RNA helicase [RNA proc 99.9 1.1E-23 2.3E-28 180.0 7.4 105 22-154 460-564 (731)
32 TIGR01389 recQ ATP-dependent D 99.9 1.2E-22 2.7E-27 178.6 13.8 102 24-153 223-326 (591)
33 KOG0344 ATP-dependent RNA heli 99.9 1.5E-22 3.3E-27 173.6 13.3 119 9-156 373-493 (593)
34 PRK04914 ATP-dependent helicas 99.9 2.7E-22 5.8E-27 183.4 14.1 117 12-154 481-599 (956)
35 KOG0346 RNA helicase [RNA proc 99.9 7.1E-23 1.5E-27 171.3 8.6 142 7-156 251-408 (569)
36 COG1111 MPH1 ERCC4-like helica 99.9 1.2E-21 2.6E-26 166.2 14.7 126 2-156 344-479 (542)
37 PRK13767 ATP-dependent helicas 99.9 2.2E-21 4.8E-26 177.2 13.7 98 25-149 284-386 (876)
38 KOG0348 ATP-dependent RNA heli 99.9 2E-21 4.4E-26 165.8 12.1 117 11-155 412-551 (708)
39 PRK12898 secA preprotein trans 99.9 3.6E-21 7.8E-26 169.9 13.7 123 5-157 453-585 (656)
40 COG0514 RecQ Superfamily II DN 99.9 3.7E-21 8E-26 167.6 12.8 108 22-157 227-334 (590)
41 KOG4284 DEAD box protein [Tran 99.9 1.5E-21 3.2E-26 169.6 10.0 119 9-156 257-377 (980)
42 PRK09200 preprotein translocas 99.9 5E-21 1.1E-25 172.0 13.5 124 4-157 407-540 (790)
43 KOG0339 ATP-dependent RNA heli 99.9 3.7E-21 8E-26 163.5 10.8 126 2-156 446-573 (731)
44 KOG0350 DEAD-box ATP-dependent 99.8 3.1E-21 6.7E-26 163.4 9.5 108 22-156 426-538 (620)
45 TIGR00631 uvrb excinuclease AB 99.8 2.1E-20 4.5E-25 166.2 13.5 118 11-156 428-551 (655)
46 PRK13766 Hef nuclease; Provisi 99.8 3.8E-20 8.1E-25 167.1 15.1 121 6-155 347-476 (773)
47 PRK09751 putative ATP-dependen 99.8 2.3E-20 5E-25 175.9 13.1 104 25-155 244-380 (1490)
48 PRK05298 excinuclease ABC subu 99.8 5.4E-20 1.2E-24 163.7 13.4 117 12-156 433-555 (652)
49 cd00079 HELICc Helicase superf 99.8 2.4E-19 5.1E-24 127.0 13.9 98 24-149 27-124 (131)
50 PF00271 Helicase_C: Helicase 99.8 3.8E-20 8.2E-25 121.8 7.6 78 43-148 1-78 (78)
51 TIGR03714 secA2 accessory Sec 99.8 1.5E-19 3.2E-24 161.6 13.4 124 3-157 402-536 (762)
52 KOG0334 RNA helicase [RNA proc 99.8 7.2E-20 1.6E-24 165.1 11.0 121 7-156 596-718 (997)
53 TIGR01587 cas3_core CRISPR-ass 99.8 2.3E-19 5.1E-24 148.4 13.1 96 23-148 220-320 (358)
54 KOG0349 Putative DEAD-box RNA 99.8 6E-20 1.3E-24 154.1 9.6 110 22-158 502-615 (725)
55 TIGR00963 secA preprotein tran 99.8 3.2E-19 6.9E-24 158.9 14.2 125 3-157 383-516 (745)
56 PHA02653 RNA helicase NPH-II; 99.8 5.1E-19 1.1E-23 157.5 13.0 104 24-156 394-512 (675)
57 TIGR00580 mfd transcription-re 99.8 7.5E-19 1.6E-23 160.9 14.4 104 24-154 659-766 (926)
58 PRK10689 transcription-repair 99.8 6.4E-19 1.4E-23 164.2 12.8 105 25-156 809-915 (1147)
59 TIGR01970 DEAH_box_HrpB ATP-de 99.8 1.2E-18 2.6E-23 158.0 12.5 105 25-156 209-334 (819)
60 PRK12906 secA preprotein trans 99.8 1.6E-18 3.5E-23 155.5 12.9 125 3-157 418-552 (796)
61 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.4E-18 5.1E-23 155.3 13.5 111 24-156 271-389 (844)
62 PRK10917 ATP-dependent DNA hel 99.8 2.8E-18 6E-23 153.5 13.3 105 23-154 469-585 (681)
63 KOG0337 ATP-dependent RNA heli 99.8 5.2E-19 1.1E-23 147.6 7.7 119 9-156 246-366 (529)
64 PRK11664 ATP-dependent RNA hel 99.8 2.2E-18 4.7E-23 156.4 11.7 105 25-156 212-337 (812)
65 TIGR00643 recG ATP-dependent D 99.8 4.8E-18 1E-22 150.8 13.0 105 23-154 446-562 (630)
66 KOG0354 DEAD-box like helicase 99.8 1.1E-17 2.4E-22 148.2 13.6 123 5-155 394-526 (746)
67 PHA02558 uvsW UvsW helicase; P 99.8 1.8E-17 4E-22 143.6 14.1 97 24-148 343-440 (501)
68 PRK02362 ski2-like helicase; P 99.7 1E-17 2.2E-22 151.0 12.5 105 24-155 242-394 (737)
69 PRK12900 secA preprotein trans 99.7 1.1E-17 2.5E-22 151.7 12.0 125 3-157 576-710 (1025)
70 TIGR03158 cas3_cyano CRISPR-as 99.7 2.5E-17 5.4E-22 137.4 11.4 87 23-145 270-357 (357)
71 KOG0351 ATP-dependent DNA heli 99.7 2.2E-17 4.7E-22 150.7 10.6 116 9-153 470-585 (941)
72 smart00490 HELICc helicase sup 99.7 3.9E-17 8.4E-22 106.7 8.5 81 40-148 2-82 (82)
73 TIGR00603 rad25 DNA repair hel 99.7 1.9E-16 4E-21 141.6 13.0 93 24-148 495-588 (732)
74 COG1201 Lhr Lhr-like helicases 99.7 9.9E-17 2.1E-21 144.3 10.3 108 11-148 242-349 (814)
75 PRK00254 ski2-like helicase; P 99.7 2.2E-16 4.8E-21 142.0 11.8 104 24-155 237-385 (720)
76 PRK11131 ATP-dependent RNA hel 99.7 2.8E-16 6.1E-21 146.8 12.1 105 23-156 284-409 (1294)
77 PRK09401 reverse gyrase; Revie 99.6 4.1E-16 8.9E-21 145.9 9.1 86 26-144 329-428 (1176)
78 PRK01172 ski2-like helicase; P 99.6 2.8E-15 6E-20 133.9 12.7 97 24-148 235-364 (674)
79 TIGR01967 DEAH_box_HrpA ATP-de 99.6 1.8E-15 3.9E-20 141.6 11.6 115 11-156 267-402 (1283)
80 PRK09694 helicase Cas3; Provis 99.6 1E-14 2.2E-19 133.1 11.6 99 23-148 558-663 (878)
81 KOG0352 ATP-dependent DNA heli 99.6 6.2E-15 1.3E-19 123.9 7.0 99 26-152 256-354 (641)
82 PLN03142 Probable chromatin-re 99.6 8.5E-14 1.8E-18 128.6 14.4 106 11-144 476-581 (1033)
83 PRK14701 reverse gyrase; Provi 99.5 1.5E-14 3.3E-19 138.4 9.2 84 25-141 330-424 (1638)
84 TIGR01054 rgy reverse gyrase. 99.5 9.2E-14 2E-18 130.3 10.7 77 25-133 326-410 (1171)
85 COG1061 SSL2 DNA or RNA helica 99.5 9.1E-13 2E-17 112.9 14.8 94 24-146 282-375 (442)
86 PRK13104 secA preprotein trans 99.4 2.7E-12 5.9E-17 116.5 13.1 125 3-157 422-586 (896)
87 PRK12904 preprotein translocas 99.4 5E-12 1.1E-16 114.5 13.8 125 3-157 408-572 (830)
88 KOG0329 ATP-dependent RNA heli 99.4 2.6E-13 5.6E-18 108.0 4.5 51 103-157 302-354 (387)
89 KOG0353 ATP-dependent DNA heli 99.4 1.1E-12 2.4E-17 109.5 7.9 105 10-143 303-407 (695)
90 PRK11448 hsdR type I restricti 99.4 6.9E-12 1.5E-16 117.3 14.2 95 25-147 698-800 (1123)
91 COG0556 UvrB Helicase subunit 99.4 3.2E-12 6.8E-17 110.0 10.7 116 11-154 432-553 (663)
92 PRK13107 preprotein translocas 99.4 6.2E-12 1.3E-16 114.1 12.3 125 3-157 427-590 (908)
93 COG1202 Superfamily II helicas 99.4 2.6E-12 5.6E-17 111.4 9.0 103 25-155 440-550 (830)
94 TIGR00595 priA primosomal prot 99.3 5.2E-12 1.1E-16 109.9 8.7 88 38-152 271-375 (505)
95 PRK05580 primosome assembly pr 99.3 1.3E-11 2.9E-16 110.6 10.1 89 37-152 438-543 (679)
96 COG4098 comFA Superfamily II D 99.3 6.6E-11 1.4E-15 97.5 11.2 100 20-148 300-402 (441)
97 COG1205 Distinct helicase fami 99.2 9.7E-11 2.1E-15 107.2 9.3 106 24-156 305-418 (851)
98 COG1200 RecG RecG-like helicas 99.1 7.2E-10 1.6E-14 97.9 11.0 121 9-156 457-587 (677)
99 COG1197 Mfd Transcription-repa 99.0 6.7E-09 1.4E-13 96.3 12.4 109 22-157 800-910 (1139)
100 COG1203 CRISPR-associated heli 99.0 2.9E-09 6.4E-14 96.4 9.8 103 19-148 434-536 (733)
101 COG1204 Superfamily II helicas 98.9 2E-09 4.3E-14 97.7 7.7 99 23-148 251-394 (766)
102 KOG4150 Predicted ATP-dependen 98.9 3.3E-09 7.2E-14 92.5 8.2 105 24-155 524-635 (1034)
103 KOG0391 SNF2 family DNA-depend 98.8 4.2E-08 9.1E-13 90.9 11.3 108 7-144 1261-1375(1958)
104 KOG0384 Chromodomain-helicase 98.8 6.6E-08 1.4E-12 89.8 11.3 98 22-144 696-793 (1373)
105 PRK12903 secA preprotein trans 98.8 9E-08 2E-12 87.1 11.9 125 3-157 404-538 (925)
106 KOG0385 Chromatin remodeling c 98.7 3E-07 6.6E-12 82.4 11.5 106 11-144 476-581 (971)
107 KOG0390 DNA repair protein, SN 98.7 3.5E-07 7.7E-12 82.6 12.0 101 23-148 593-693 (776)
108 KOG0950 DNA polymerase theta/e 98.6 1.2E-07 2.6E-12 86.4 8.7 97 24-148 459-597 (1008)
109 PRK12326 preprotein translocas 98.6 5.8E-07 1.2E-11 80.8 12.5 125 3-157 405-546 (764)
110 KOG0392 SNF2 family DNA-depend 98.6 3.9E-07 8.4E-12 84.9 10.1 95 24-144 1339-1436(1549)
111 KOG0953 Mitochondrial RNA heli 98.5 5.4E-07 1.2E-11 78.5 9.4 99 22-148 355-462 (700)
112 COG1643 HrpA HrpA-like helicas 98.5 5.5E-07 1.2E-11 82.4 9.8 115 11-154 247-383 (845)
113 KOG0387 Transcription-coupled 98.5 1.9E-06 4.2E-11 77.5 12.4 107 8-144 532-640 (923)
114 COG0553 HepA Superfamily II DN 98.5 3.4E-06 7.5E-11 76.6 13.4 108 8-144 694-804 (866)
115 PRK12899 secA preprotein trans 98.4 2.7E-06 5.9E-11 78.3 12.1 125 3-157 546-680 (970)
116 KOG0947 Cytoplasmic exosomal R 98.4 1.7E-06 3.6E-11 79.3 9.5 109 10-148 554-709 (1248)
117 PRK12901 secA preprotein trans 98.4 3.9E-06 8.4E-11 77.8 10.7 125 3-157 606-740 (1112)
118 TIGR01407 dinG_rel DnaQ family 98.3 9.2E-06 2E-10 75.0 13.1 92 10-131 661-755 (850)
119 KOG0920 ATP-dependent RNA heli 98.3 2.6E-06 5.7E-11 78.3 8.4 121 8-156 397-542 (924)
120 KOG0922 DEAH-box RNA helicase 98.3 3.3E-06 7.2E-11 74.7 8.7 106 22-154 255-386 (674)
121 KOG0951 RNA helicase BRR2, DEA 98.3 5.1E-06 1.1E-10 78.0 10.1 103 16-147 538-687 (1674)
122 KOG0389 SNF2 family DNA-depend 98.3 1.6E-05 3.5E-10 71.7 12.2 102 8-139 763-865 (941)
123 COG4096 HsdR Type I site-speci 98.2 1.6E-05 3.5E-10 72.1 11.9 110 8-144 406-522 (875)
124 PRK13103 secA preprotein trans 98.2 9.5E-06 2.1E-10 74.6 10.3 125 3-157 427-590 (913)
125 KOG0388 SNF2 family DNA-depend 98.2 1.6E-05 3.5E-10 71.3 10.2 107 8-144 1030-1136(1185)
126 KOG1000 Chromatin remodeling p 98.1 1.7E-05 3.8E-10 68.6 9.4 106 22-154 489-598 (689)
127 TIGR00348 hsdR type I site-spe 98.1 4.2E-05 9.1E-10 69.0 12.4 95 25-146 514-633 (667)
128 KOG0948 Nuclear exosomal RNA h 98.1 7.6E-06 1.6E-10 73.6 6.7 117 11-156 371-537 (1041)
129 KOG1002 Nucleotide excision re 98.0 4.2E-05 9E-10 66.4 9.9 112 5-144 619-737 (791)
130 PF13307 Helicase_C_2: Helicas 98.0 4E-05 8.6E-10 57.5 8.5 79 25-132 9-92 (167)
131 CHL00122 secA preprotein trans 97.9 0.00026 5.6E-09 65.1 12.7 88 3-120 402-491 (870)
132 COG1110 Reverse gyrase [DNA re 97.8 0.00011 2.4E-09 68.1 9.4 91 7-132 323-417 (1187)
133 KOG1123 RNA polymerase II tran 97.8 0.00038 8.2E-09 60.7 11.8 102 11-146 531-633 (776)
134 KOG1015 Transcription regulato 97.8 0.00012 2.5E-09 67.7 8.8 108 22-152 1139-1269(1567)
135 KOG0952 DNA/RNA helicase MER3/ 97.7 0.00021 4.5E-09 66.5 9.7 103 24-154 348-487 (1230)
136 KOG0923 mRNA splicing factor A 97.7 8E-05 1.7E-09 66.5 6.7 108 22-156 470-604 (902)
137 KOG0924 mRNA splicing factor A 97.7 8.8E-05 1.9E-09 66.5 6.8 119 9-154 545-693 (1042)
138 COG1199 DinG Rad3-related DNA 97.7 0.00078 1.7E-08 60.3 12.2 92 10-132 466-559 (654)
139 COG4889 Predicted helicase [Ge 97.6 3.4E-05 7.3E-10 70.8 2.6 99 25-147 460-572 (1518)
140 KOG0386 Chromatin remodeling c 97.6 0.00033 7.2E-09 64.8 8.7 108 12-144 712-820 (1157)
141 TIGR00596 rad1 DNA repair prot 97.6 0.00028 6.1E-09 64.9 8.3 43 5-47 269-317 (814)
142 KOG0949 Predicted helicase, DE 97.6 0.00013 2.9E-09 67.4 5.7 69 53-148 965-1034(1330)
143 PRK08074 bifunctional ATP-depe 97.6 0.0015 3.3E-08 61.1 12.8 94 10-132 739-835 (928)
144 COG4581 Superfamily II RNA hel 97.6 0.00039 8.4E-09 65.1 8.7 105 23-154 377-533 (1041)
145 PRK11747 dinG ATP-dependent DN 97.4 0.0037 7.9E-08 56.9 13.4 94 9-132 521-616 (697)
146 PF06862 DUF1253: Protein of u 97.4 0.0047 1E-07 53.3 12.6 97 22-144 297-393 (442)
147 PRK12902 secA preprotein trans 97.3 0.0012 2.6E-08 61.0 8.5 90 3-121 417-507 (939)
148 PRK07246 bifunctional ATP-depe 97.3 0.006 1.3E-07 56.5 13.1 77 24-131 646-724 (820)
149 TIGR00604 rad3 DNA repair heli 97.2 0.0087 1.9E-07 54.4 13.4 97 10-132 509-615 (705)
150 KOG4439 RNA polymerase II tran 97.0 0.0072 1.6E-07 54.6 10.3 110 7-144 730-840 (901)
151 COG1198 PriA Primosomal protei 96.9 0.0031 6.7E-08 57.5 7.6 83 38-147 493-590 (730)
152 KOG0926 DEAH-box RNA helicase 96.9 0.00071 1.5E-08 61.8 3.1 52 99-154 630-700 (1172)
153 PRK10917 ATP-dependent DNA hel 96.9 0.007 1.5E-07 54.9 9.2 77 24-127 309-389 (681)
154 COG0653 SecA Preprotein transl 96.8 0.0028 6.1E-08 58.2 6.5 91 3-123 407-497 (822)
155 PRK05580 primosome assembly pr 96.6 0.021 4.7E-07 51.8 10.6 77 25-129 190-266 (679)
156 smart00492 HELICc3 helicase su 96.5 0.056 1.2E-06 39.5 10.3 51 56-132 27-79 (141)
157 TIGR00595 priA primosomal prot 96.5 0.025 5.5E-07 49.6 9.7 90 9-129 12-101 (505)
158 KOG0701 dsRNA-specific nucleas 96.5 0.0022 4.7E-08 62.4 3.2 92 26-144 293-395 (1606)
159 TIGR00643 recG ATP-dependent D 96.4 0.018 3.8E-07 51.8 8.7 77 24-127 283-363 (630)
160 PRK14873 primosome assembly pr 96.2 0.058 1.3E-06 49.0 10.7 92 7-129 173-265 (665)
161 PF02399 Herpes_ori_bp: Origin 96.2 0.049 1.1E-06 50.2 10.0 94 13-144 274-373 (824)
162 TIGR00580 mfd transcription-re 95.9 0.043 9.2E-07 51.6 8.8 78 24-128 499-580 (926)
163 TIGR02562 cas3_yersinia CRISPR 95.9 0.036 7.7E-07 52.4 8.1 110 29-148 760-880 (1110)
164 TIGR03117 cas_csf4 CRISPR-asso 95.9 0.086 1.9E-06 47.6 10.1 94 11-132 458-561 (636)
165 KOG0925 mRNA splicing factor A 95.7 0.087 1.9E-06 46.2 8.9 122 8-155 234-384 (699)
166 PF13871 Helicase_C_4: Helicas 95.6 0.033 7.1E-07 45.4 6.0 46 99-148 61-114 (278)
167 COG1110 Reverse gyrase [DNA re 95.4 0.067 1.5E-06 50.4 7.5 63 22-108 122-190 (1187)
168 COG1198 PriA Primosomal protei 95.3 0.058 1.3E-06 49.4 6.9 90 7-127 230-319 (730)
169 smart00491 HELICc2 helicase su 95.3 0.29 6.3E-06 35.7 9.5 70 38-132 4-80 (142)
170 PRK10689 transcription-repair 95.2 0.12 2.6E-06 49.7 9.1 78 24-127 648-728 (1147)
171 COG0513 SrmB Superfamily II DN 94.8 0.2 4.3E-06 44.1 8.7 90 11-127 84-180 (513)
172 COG1200 RecG RecG-like helicas 94.4 0.31 6.6E-06 44.2 9.1 99 9-143 296-398 (677)
173 PRK11776 ATP-dependent RNA hel 94.3 0.19 4.2E-06 43.1 7.5 89 13-129 61-155 (460)
174 KOG1016 Predicted DNA helicase 94.3 0.2 4.2E-06 46.4 7.6 98 23-144 717-831 (1387)
175 PRK14701 reverse gyrase; Provi 94.3 0.27 5.8E-06 49.0 9.1 63 24-109 121-188 (1638)
176 cd00268 DEADc DEAD-box helicas 94.2 0.48 1E-05 35.6 8.8 90 11-127 54-149 (203)
177 PRK11634 ATP-dependent RNA hel 93.6 0.38 8.2E-06 43.5 8.1 86 14-127 64-155 (629)
178 TIGR00614 recQ_fam ATP-depende 93.5 0.67 1.5E-05 40.1 9.3 60 25-108 51-110 (470)
179 KOG1001 Helicase-like transcri 92.8 0.035 7.7E-07 50.4 0.4 92 26-144 540-632 (674)
180 cd01524 RHOD_Pyr_redox Member 92.5 0.26 5.5E-06 32.5 4.2 38 23-61 49-86 (90)
181 TIGR01389 recQ ATP-dependent D 92.2 1.3 2.9E-05 39.3 9.5 62 9-75 41-102 (591)
182 cd01528 RHOD_2 Member of the R 92.1 0.64 1.4E-05 31.2 5.9 52 9-61 43-94 (101)
183 TIGR01054 rgy reverse gyrase. 92.0 0.47 1E-05 45.9 6.8 62 24-108 120-187 (1171)
184 KOG2340 Uncharacterized conser 91.9 1.6 3.5E-05 38.9 9.3 94 25-144 552-648 (698)
185 PRK11192 ATP-dependent RNA hel 91.6 1.2 2.7E-05 37.8 8.4 78 25-129 73-155 (434)
186 PRK04537 ATP-dependent RNA hel 91.3 1.3 2.7E-05 39.6 8.4 76 25-127 84-165 (572)
187 cd00158 RHOD Rhodanese Homolog 91.2 0.46 9.9E-06 30.4 4.2 40 22-61 47-86 (89)
188 cd01529 4RHOD_Repeats Member o 91.1 0.56 1.2E-05 31.2 4.7 40 22-61 53-92 (96)
189 PRK10590 ATP-dependent RNA hel 91.1 2 4.2E-05 37.1 9.2 76 26-128 76-156 (456)
190 cd01449 TST_Repeat_2 Thiosulfa 91.1 0.78 1.7E-05 31.5 5.6 38 23-60 76-113 (118)
191 PRK04837 ATP-dependent RNA hel 90.3 2.6 5.5E-05 35.8 9.1 78 25-129 83-165 (423)
192 cd01518 RHOD_YceA Member of th 90.3 0.97 2.1E-05 30.3 5.3 39 23-61 59-97 (101)
193 KOG0347 RNA helicase [RNA proc 90.2 0.83 1.8E-05 40.8 6.0 44 28-71 266-312 (731)
194 cd01444 GlpE_ST GlpE sulfurtra 89.9 0.82 1.8E-05 30.0 4.7 38 23-60 54-91 (96)
195 smart00450 RHOD Rhodanese Homo 89.7 0.58 1.2E-05 30.3 3.8 40 22-61 53-92 (100)
196 cd01527 RHOD_YgaP Member of th 89.6 0.7 1.5E-05 30.8 4.2 40 22-61 51-90 (99)
197 cd01448 TST_Repeat_1 Thiosulfa 89.4 1.2 2.6E-05 30.8 5.4 51 9-61 65-116 (122)
198 PRK13766 Hef nuclease; Provisi 89.2 2.5 5.4E-05 38.8 8.7 79 23-129 56-139 (773)
199 cd01523 RHOD_Lact_B Member of 89.0 0.91 2E-05 30.3 4.4 38 23-61 59-96 (100)
200 PRK11057 ATP-dependent DNA hel 88.8 3.8 8.3E-05 36.8 9.4 50 25-75 65-114 (607)
201 PRK01297 ATP-dependent RNA hel 88.8 4.4 9.6E-05 35.0 9.5 77 25-127 162-243 (475)
202 cd01520 RHOD_YbbB Member of th 88.2 1.5 3.2E-05 31.0 5.3 39 22-61 83-122 (128)
203 PLN03137 ATP-dependent DNA hel 88.2 4.3 9.3E-05 39.3 9.6 72 9-108 488-561 (1195)
204 cd01532 4RHOD_Repeat_1 Member 88.1 0.94 2E-05 30.0 4.0 38 24-61 49-88 (92)
205 PTZ00110 helicase; Provisional 87.7 3 6.6E-05 36.9 8.0 77 25-128 203-284 (545)
206 PF00270 DEAD: DEAD/DEAH box h 87.3 7.3 0.00016 27.9 8.7 94 24-144 43-146 (169)
207 cd01519 RHOD_HSP67B2 Member of 87.3 0.9 1.9E-05 30.5 3.5 39 23-61 64-102 (106)
208 KOG0330 ATP-dependent RNA heli 87.3 4.1 8.9E-05 35.1 8.0 89 10-126 115-209 (476)
209 cd01533 4RHOD_Repeat_2 Member 87.2 2.5 5.5E-05 28.7 5.8 38 24-61 65-103 (109)
210 COG1197 Mfd Transcription-repa 87.1 3.7 8E-05 39.6 8.4 79 22-127 640-722 (1139)
211 KOG0331 ATP-dependent RNA heli 87.0 2.9 6.4E-05 37.0 7.3 97 23-146 163-272 (519)
212 cd01522 RHOD_1 Member of the R 86.9 1.7 3.7E-05 30.2 4.9 39 23-61 62-100 (117)
213 cd01526 RHOD_ThiF Member of th 86.4 0.93 2E-05 31.7 3.3 39 23-61 70-109 (122)
214 KOG0339 ATP-dependent RNA heli 85.9 4.3 9.3E-05 36.2 7.6 75 25-127 296-376 (731)
215 TIGR03817 DECH_helic helicase/ 85.2 4.5 9.8E-05 37.3 7.9 52 13-66 71-124 (742)
216 PF00581 Rhodanese: Rhodanese- 85.1 2.8 6.1E-05 27.9 5.1 54 8-61 50-108 (113)
217 cd01447 Polysulfide_ST Polysul 85.1 0.96 2.1E-05 30.1 2.7 39 23-61 59-97 (103)
218 PLN02160 thiosulfate sulfurtra 85.0 2.8 6E-05 30.2 5.3 38 23-60 79-116 (136)
219 cd01525 RHOD_Kc Member of the 85.0 1.4 3E-05 29.5 3.6 37 25-61 65-101 (105)
220 TIGR03865 PQQ_CXXCW PQQ-depend 85.0 3.2 6.8E-05 30.9 5.7 38 23-60 114-152 (162)
221 cd01535 4RHOD_Repeat_4 Member 84.6 3.1 6.8E-05 30.3 5.5 37 24-60 48-84 (145)
222 cd01521 RHOD_PspE2 Member of t 83.9 1.9 4.2E-05 29.4 3.9 39 22-61 61-101 (110)
223 PRK09751 putative ATP-dependen 83.5 6.4 0.00014 39.2 8.5 78 25-129 37-132 (1490)
224 cd01445 TST_Repeats Thiosulfat 83.5 3.9 8.5E-05 29.5 5.6 51 9-61 81-134 (138)
225 cd01534 4RHOD_Repeat_3 Member 83.2 1.9 4.1E-05 28.5 3.6 37 24-61 55-91 (95)
226 PRK09401 reverse gyrase; Revie 82.8 3.8 8.1E-05 39.9 6.6 62 24-108 122-188 (1176)
227 cd00046 DEXDc DEAD-like helica 82.5 12 0.00026 25.0 8.4 54 12-66 18-73 (144)
228 cd01530 Cdc25 Cdc25 phosphatas 82.4 1.9 4.1E-05 30.3 3.4 39 23-61 66-117 (121)
229 PF10593 Z1: Z1 domain; Inter 81.1 4.1 8.8E-05 32.4 5.3 46 99-149 135-181 (239)
230 KOG0385 Chromatin remodeling c 81.0 12 0.00027 35.0 8.7 60 14-75 206-265 (971)
231 PRK01415 hypothetical protein; 80.8 4 8.8E-05 32.7 5.2 40 22-61 168-207 (247)
232 COG1111 MPH1 ERCC4-like helica 80.5 8.7 0.00019 34.0 7.4 79 23-129 56-139 (542)
233 PRK10287 thiosulfate:cyanide s 80.3 8.1 0.00018 26.6 6.0 51 8-61 45-95 (104)
234 KOG0389 SNF2 family DNA-depend 80.0 15 0.00033 34.4 9.0 64 22-108 445-508 (941)
235 PRK00162 glpE thiosulfate sulf 79.9 4.3 9.2E-05 27.5 4.5 39 23-61 56-94 (108)
236 PRK05320 rhodanese superfamily 79.5 5 0.00011 32.2 5.4 39 24-62 174-212 (257)
237 TIGR02981 phageshock_pspE phag 78.9 9.9 0.00021 25.9 6.0 50 8-60 43-92 (101)
238 KOG0383 Predicted helicase [Ge 76.4 2.1 4.5E-05 39.2 2.5 73 14-108 620-692 (696)
239 PRK11493 sseA 3-mercaptopyruva 76.4 8 0.00017 31.1 5.7 38 23-60 229-266 (281)
240 PRK13767 ATP-dependent helicas 76.1 16 0.00036 34.4 8.4 78 25-129 84-180 (876)
241 KOG0338 ATP-dependent RNA heli 75.4 18 0.00038 32.5 7.8 90 13-129 238-335 (691)
242 PF11496 HDA2-3: Class II hist 75.0 19 0.00041 29.6 7.6 57 7-64 97-155 (297)
243 PRK12898 secA preprotein trans 74.0 18 0.00039 33.1 7.8 56 10-67 130-189 (656)
244 KOG1513 Nuclear helicase MOP-3 74.0 2.4 5.1E-05 39.8 2.2 45 99-147 857-909 (1300)
245 KOG0921 Dosage compensation co 73.5 4.5 9.7E-05 38.4 3.9 103 22-151 640-767 (1282)
246 PLN02723 3-mercaptopyruvate su 72.8 11 0.00024 31.0 5.9 50 9-60 255-304 (320)
247 PTZ00424 helicase 45; Provisio 72.8 33 0.00073 28.5 8.8 79 24-129 95-178 (401)
248 PRK00142 putative rhodanese-re 72.7 6.9 0.00015 32.4 4.6 41 22-62 168-208 (314)
249 cd01132 F1_ATPase_alpha F1 ATP 72.1 52 0.0011 26.8 10.0 39 27-65 98-142 (274)
250 PLN00206 DEAD-box ATP-dependen 71.6 15 0.00034 32.2 6.8 79 24-129 195-278 (518)
251 COG0514 RecQ Superfamily II DN 71.4 13 0.00028 33.6 6.2 49 26-75 58-106 (590)
252 cd00032 CASc Caspase, interleu 70.8 49 0.0011 25.9 11.0 50 23-74 7-68 (243)
253 KOG0298 DEAD box-containing he 70.4 8.9 0.00019 37.5 5.2 95 22-148 1218-1312(1394)
254 COG1205 Distinct helicase fami 69.9 26 0.00057 33.0 8.2 55 10-66 102-161 (851)
255 PF04364 DNA_pol3_chi: DNA pol 69.7 12 0.00027 26.9 4.9 46 9-58 16-61 (137)
256 smart00115 CASc Caspase, inter 67.6 30 0.00066 27.2 7.1 52 22-75 5-67 (241)
257 cd01080 NAD_bind_m-THF_DH_Cycl 67.5 50 0.0011 24.7 9.2 91 9-135 29-122 (168)
258 cd06533 Glyco_transf_WecG_TagA 67.3 49 0.0011 24.6 9.3 65 8-75 32-98 (171)
259 PRK05728 DNA polymerase III su 67.2 14 0.00031 26.8 4.8 47 8-58 15-61 (142)
260 TIGR03167 tRNA_sel_U_synt tRNA 67.2 19 0.0004 29.8 6.0 48 13-61 62-110 (311)
261 PRK14873 primosome assembly pr 66.6 32 0.0007 31.5 7.8 49 99-152 471-533 (665)
262 PLN02723 3-mercaptopyruvate su 66.3 14 0.00031 30.4 5.1 52 8-61 88-140 (320)
263 TIGR00963 secA preprotein tran 66.2 24 0.00051 32.8 6.9 59 9-69 82-144 (745)
264 KOG0329 ATP-dependent RNA heli 65.2 14 0.00029 30.4 4.6 76 25-127 110-191 (387)
265 KOG0346 RNA helicase [RNA proc 65.0 17 0.00037 32.0 5.4 76 9-111 72-157 (569)
266 cd05212 NAD_bind_m-THF_DH_Cycl 64.6 52 0.0011 23.9 8.9 92 8-132 12-103 (140)
267 PRK02362 ski2-like helicase; P 64.0 19 0.00041 33.1 6.0 39 24-63 66-107 (737)
268 PRK13104 secA preprotein trans 62.5 42 0.00092 31.9 7.9 45 24-69 122-170 (896)
269 COG0607 PspE Rhodanese-related 62.3 8.1 0.00017 25.7 2.5 36 24-60 60-96 (110)
270 PRK06827 phosphoribosylpyropho 61.2 34 0.00074 29.2 6.6 61 24-108 263-328 (382)
271 PRK11493 sseA 3-mercaptopyruva 60.9 20 0.00043 28.8 5.0 52 8-61 72-124 (281)
272 KOG1180 Acyl-CoA synthetase [L 60.4 24 0.00051 32.0 5.6 80 24-130 114-194 (678)
273 PRK05597 molybdopterin biosynt 60.3 15 0.00033 30.8 4.3 39 23-61 312-350 (355)
274 TIGR00696 wecB_tagA_cpsF bacte 60.2 72 0.0016 24.1 9.5 64 9-75 35-99 (177)
275 KOG0342 ATP-dependent RNA heli 60.1 49 0.0011 29.4 7.4 49 13-61 142-194 (543)
276 KOG0340 ATP-dependent RNA heli 59.4 26 0.00056 30.0 5.4 53 13-66 64-119 (442)
277 KOG0350 DEAD-box ATP-dependent 59.0 32 0.00069 30.8 6.1 93 13-127 203-301 (620)
278 COG0300 DltE Short-chain dehyd 58.8 79 0.0017 25.6 8.0 52 24-75 29-80 (265)
279 TIGR00096 probable S-adenosylm 58.6 49 0.0011 26.9 6.9 61 28-114 27-87 (276)
280 PRK08762 molybdopterin biosynt 57.7 16 0.00034 30.8 4.0 38 23-60 55-92 (376)
281 PF09711 Cas_Csn2: CRISPR-asso 56.6 40 0.00087 25.9 5.7 50 7-59 114-168 (188)
282 smart00493 TOPRIM topoisomeras 56.6 45 0.00098 20.6 6.4 45 28-74 2-46 (76)
283 KOG0343 RNA Helicase [RNA proc 56.6 20 0.00044 32.4 4.6 52 12-63 125-182 (758)
284 PF13245 AAA_19: Part of AAA d 56.1 35 0.00075 21.9 4.7 37 9-45 25-62 (76)
285 cd03028 GRX_PICOT_like Glutare 55.6 56 0.0012 21.4 6.0 41 25-66 7-53 (90)
286 PRK13958 N-(5'-phosphoribosyl) 55.2 80 0.0017 24.4 7.3 51 8-64 39-89 (207)
287 TIGR01041 ATP_syn_B_arch ATP s 54.8 1.5E+02 0.0032 26.0 9.6 24 134-157 278-301 (458)
288 PF03808 Glyco_tran_WecB: Glyc 54.7 86 0.0019 23.2 9.2 65 8-75 34-100 (172)
289 cd01531 Acr2p Eukaryotic arsen 54.7 32 0.0007 23.3 4.6 38 24-61 61-107 (113)
290 COG1204 Superfamily II helicas 54.6 46 0.00099 31.1 6.7 54 9-63 60-116 (766)
291 PF00006 ATP-synt_ab: ATP synt 54.3 73 0.0016 24.8 7.0 22 27-48 44-66 (215)
292 PRK07878 molybdopterin biosynt 54.2 19 0.00042 30.6 4.0 39 23-61 341-379 (392)
293 PRK00254 ski2-like helicase; P 54.0 51 0.0011 30.2 7.0 38 25-63 68-108 (720)
294 COG0353 RecR Recombinational D 53.8 61 0.0013 25.2 6.3 62 22-108 75-145 (198)
295 KOG0951 RNA helicase BRR2, DEA 53.5 1.3E+02 0.0028 30.2 9.5 99 22-149 1356-1486(1674)
296 PRK09200 preprotein translocas 53.3 62 0.0013 30.4 7.3 57 9-67 104-165 (790)
297 COG2519 GCD14 tRNA(1-methylade 52.7 30 0.00064 28.0 4.6 30 22-51 185-214 (256)
298 PRK06646 DNA polymerase III su 52.2 36 0.00078 25.2 4.7 47 8-58 15-61 (154)
299 PRK12899 secA preprotein trans 52.0 76 0.0016 30.5 7.7 43 25-68 135-181 (970)
300 cd01446 DSP_MapKP N-terminal r 51.9 21 0.00046 24.9 3.4 38 24-61 74-122 (132)
301 PRK11784 tRNA 2-selenouridine 50.9 45 0.00097 28.0 5.6 49 24-74 87-136 (345)
302 KOG0334 RNA helicase [RNA proc 50.5 41 0.00089 32.3 5.7 47 25-75 438-488 (997)
303 COG1941 FrhG Coenzyme F420-red 50.1 53 0.0012 26.3 5.6 40 29-75 37-76 (247)
304 PF04763 DUF562: Protein of un 50.0 1E+02 0.0022 22.7 6.5 45 22-66 12-68 (146)
305 smart00487 DEXDc DEAD-like hel 49.9 89 0.0019 22.0 7.9 47 25-75 54-104 (201)
306 PF01751 Toprim: Toprim domain 49.9 24 0.00051 23.6 3.2 31 29-60 2-32 (100)
307 PRK09281 F0F1 ATP synthase sub 49.6 1.3E+02 0.0028 26.8 8.4 24 134-157 294-319 (502)
308 KOG0345 ATP-dependent RNA heli 48.9 1.2E+02 0.0025 27.2 7.8 93 10-128 60-164 (567)
309 PRK08972 fliI flagellum-specif 47.8 1.9E+02 0.0042 25.3 9.1 24 134-157 292-315 (444)
310 PRK12904 preprotein translocas 47.3 99 0.0021 29.3 7.7 59 9-69 107-169 (830)
311 KOG0335 ATP-dependent RNA heli 47.3 89 0.0019 27.6 7.0 37 25-61 152-191 (482)
312 PF09419 PGP_phosphatase: Mito 47.0 1E+02 0.0023 23.1 6.6 61 9-75 62-130 (168)
313 PRK09189 uroporphyrinogen-III 45.7 90 0.0019 24.1 6.4 52 23-75 116-169 (240)
314 TIGR02621 cas3_GSU0051 CRISPR- 45.6 42 0.00092 31.7 5.1 39 25-63 61-126 (844)
315 PRK09629 bifunctional thiosulf 45.3 46 0.00099 30.2 5.1 52 8-61 66-118 (610)
316 PRK07594 type III secretion sy 45.3 1.7E+02 0.0036 25.6 8.3 22 134-157 285-306 (433)
317 PF12683 DUF3798: Protein of u 44.5 13 0.00028 30.3 1.4 80 22-135 59-144 (275)
318 cd01443 Cdc25_Acr2p Cdc25 enzy 44.5 96 0.0021 20.9 6.2 37 25-61 66-109 (113)
319 PRK07960 fliI flagellum-specif 44.4 1.9E+02 0.004 25.5 8.5 24 134-157 305-328 (455)
320 COG1922 WecG Teichoic acid bio 44.3 1.7E+02 0.0037 23.6 8.5 51 25-75 108-160 (253)
321 KOG0352 ATP-dependent DNA heli 44.2 48 0.001 29.3 4.8 49 26-75 62-110 (641)
322 PRK02269 ribose-phosphate pyro 44.1 99 0.0022 25.6 6.6 59 23-108 215-278 (320)
323 PRK09280 F0F1 ATP synthase sub 43.8 2.3E+02 0.0049 25.0 9.2 21 135-157 279-299 (463)
324 COG1182 AcpD Acyl carrier prot 43.5 30 0.00064 27.0 3.2 28 100-144 89-116 (202)
325 PRK00553 ribose-phosphate pyro 42.9 1E+02 0.0022 25.7 6.5 63 23-108 216-283 (332)
326 PRK09629 bifunctional thiosulf 42.9 60 0.0013 29.5 5.5 50 9-60 209-258 (610)
327 PHA03371 circ protein; Provisi 42.8 27 0.00059 27.7 2.9 32 113-144 30-75 (240)
328 TIGR01866 cas_Csn2 CRISPR-asso 41.8 84 0.0018 24.7 5.5 50 7-59 146-200 (216)
329 PRK07411 hypothetical protein; 41.7 43 0.00093 28.5 4.2 38 23-61 340-377 (390)
330 PF11019 DUF2608: Protein of u 41.4 1.1E+02 0.0024 24.4 6.3 49 7-59 163-211 (252)
331 PRK01172 ski2-like helicase; P 41.2 89 0.0019 28.4 6.4 37 25-62 65-104 (674)
332 cd03031 GRX_GRX_like Glutaredo 41.0 1.4E+02 0.0031 21.8 7.2 45 27-72 1-52 (147)
333 COG1964 Predicted Fe-S oxidore 41.0 51 0.0011 28.9 4.5 91 8-128 124-224 (475)
334 KOG0351 ATP-dependent DNA heli 40.5 97 0.0021 29.8 6.6 49 27-76 306-354 (941)
335 PRK01222 N-(5'-phosphoribosyl) 40.5 1.7E+02 0.0037 22.5 7.5 38 25-65 55-92 (210)
336 PRK05600 thiamine biosynthesis 40.0 57 0.0012 27.6 4.7 37 25-61 332-369 (370)
337 PRK04196 V-type ATP synthase s 39.4 2.7E+02 0.0058 24.5 10.6 25 133-157 279-303 (460)
338 COG1201 Lhr Lhr-like helicases 39.3 70 0.0015 30.2 5.4 93 9-129 53-157 (814)
339 TIGR03324 alt_F1F0_F1_al alter 37.3 2.5E+02 0.0055 25.0 8.3 23 135-157 295-319 (497)
340 COG0313 Predicted methyltransf 36.0 1.7E+02 0.0037 24.0 6.6 60 29-114 33-92 (275)
341 COG2927 HolC DNA polymerase II 35.8 99 0.0022 22.8 4.8 37 10-49 17-53 (144)
342 KOG0348 ATP-dependent RNA heli 35.0 1.6E+02 0.0035 26.8 6.7 91 9-127 190-293 (708)
343 PRK12326 preprotein translocas 34.8 1.8E+02 0.0038 27.4 7.1 60 9-70 104-167 (764)
344 cd03418 GRX_GRXb_1_3_like Glut 34.7 1.1E+02 0.0023 18.6 6.4 43 28-71 2-45 (75)
345 PF04273 DUF442: Putative phos 34.3 1.3E+02 0.0028 20.8 5.1 20 25-44 86-105 (110)
346 TIGR00365 monothiol glutaredox 33.9 1.4E+02 0.0031 19.8 8.4 42 25-67 11-58 (97)
347 PRK07199 phosphoribosylpyropho 33.4 2.2E+02 0.0047 23.4 7.0 58 24-108 210-272 (301)
348 PRK13107 preprotein translocas 32.4 1.9E+02 0.0041 27.7 7.1 57 9-67 108-168 (908)
349 PF02602 HEM4: Uroporphyrinoge 32.3 94 0.002 23.5 4.5 53 22-75 114-167 (231)
350 PLN02743 nicotinamidase 32.3 1.6E+02 0.0035 23.3 5.9 91 40-155 141-237 (239)
351 KOG1403 Predicted alanine-glyo 32.3 83 0.0018 26.6 4.3 39 9-48 86-124 (452)
352 PF07652 Flavi_DEAD: Flaviviru 31.6 1.3E+02 0.0029 22.2 4.9 37 10-49 21-57 (148)
353 PTZ00062 glutaredoxin; Provisi 31.1 2.5E+02 0.0054 21.7 8.3 53 10-67 101-159 (204)
354 PRK13103 secA preprotein trans 31.0 1.8E+02 0.0038 28.0 6.7 60 9-70 108-171 (913)
355 KOG2792 Putative cytochrome C 31.0 1.4E+02 0.003 24.4 5.2 65 7-74 158-224 (280)
356 PLN03142 Probable chromatin-re 30.9 3.2E+02 0.007 26.7 8.5 49 23-73 217-265 (1033)
357 PF00148 Oxidored_nitro: Nitro 30.6 2.8E+02 0.006 23.1 7.4 34 24-59 270-303 (398)
358 cd05796 Ribosomal_P0_like Ribo 30.0 2.3E+02 0.0049 20.9 6.8 32 113-144 104-139 (163)
359 PRK06936 type III secretion sy 29.7 3.8E+02 0.0083 23.4 8.2 21 135-157 293-313 (439)
360 PRK02458 ribose-phosphate pyro 29.5 2.3E+02 0.005 23.5 6.6 59 23-108 216-279 (323)
361 TIGR03714 secA2 accessory Sec 29.5 2.7E+02 0.0059 26.2 7.5 57 9-67 96-161 (762)
362 PRK05298 excinuclease ABC subu 29.4 2.6E+02 0.0056 25.5 7.4 93 25-144 57-179 (652)
363 COG4098 comFA Superfamily II D 29.3 3.8E+02 0.0081 23.2 8.8 55 7-64 129-184 (441)
364 PF09413 DUF2007: Domain of un 28.3 1.1E+02 0.0023 18.7 3.5 30 28-58 2-31 (67)
365 PF02863 Arg_repressor_C: Argi 28.3 72 0.0016 20.1 2.7 23 25-47 47-69 (70)
366 PF09439 SRPRB: Signal recogni 28.0 1.1E+02 0.0024 23.3 4.1 10 37-46 95-104 (181)
367 PRK15483 type III restriction- 27.6 75 0.0016 30.6 3.7 43 99-145 501-543 (986)
368 TIGR00631 uvrb excinuclease AB 27.2 2.7E+02 0.0058 25.6 7.1 92 25-143 54-175 (655)
369 PRK04923 ribose-phosphate pyro 27.1 2.8E+02 0.0061 23.0 6.7 59 23-108 215-278 (319)
370 KOG0337 ATP-dependent RNA heli 27.0 2.9E+02 0.0062 24.5 6.7 91 10-127 75-170 (529)
371 PTZ00145 phosphoribosylpyropho 27.0 2.7E+02 0.0058 24.4 6.7 59 23-108 333-396 (439)
372 PF02142 MGS: MGS-like domain 26.8 55 0.0012 21.6 2.1 38 33-75 18-59 (95)
373 PRK08927 fliI flagellum-specif 26.7 4.4E+02 0.0095 23.1 8.6 24 134-157 288-311 (442)
374 PRK14994 SAM-dependent 16S rib 26.5 1.9E+02 0.004 23.6 5.5 45 29-75 40-84 (287)
375 COG0610 Type I site-specific r 26.4 1.7E+02 0.0036 28.2 5.8 54 98-156 592-651 (962)
376 COG1054 Predicted sulfurtransf 26.0 58 0.0013 27.0 2.4 40 22-61 169-208 (308)
377 PRK05688 fliI flagellum-specif 25.7 4.6E+02 0.0099 23.0 9.2 24 134-157 298-321 (451)
378 PRK00934 ribose-phosphate pyro 25.6 3.2E+02 0.007 22.0 6.7 41 24-64 203-248 (285)
379 PRK10824 glutaredoxin-4; Provi 25.6 2.4E+02 0.0052 19.7 8.1 46 25-72 14-65 (115)
380 PF13344 Hydrolase_6: Haloacid 25.4 1.2E+02 0.0025 20.4 3.5 38 12-53 20-58 (101)
381 cd01135 V_A-ATPase_B V/A-type 25.3 3.8E+02 0.0082 21.9 8.2 41 27-67 102-148 (276)
382 PTZ00135 60S acidic ribosomal 25.2 3.9E+02 0.0085 22.1 9.3 32 113-144 110-144 (310)
383 PF14572 Pribosyl_synth: Phosp 25.0 2.4E+02 0.0053 21.6 5.5 59 23-108 81-144 (184)
384 PRK01269 tRNA s(4)U8 sulfurtra 25.0 1.9E+02 0.0041 25.3 5.6 34 23-57 447-480 (482)
385 TIGR00282 metallophosphoestera 24.9 2.1E+02 0.0046 23.1 5.4 39 35-75 130-168 (266)
386 PRK06756 flavodoxin; Provision 24.7 2.6E+02 0.0055 19.7 7.6 63 9-73 67-140 (148)
387 PRK12906 secA preprotein trans 24.6 2.5E+02 0.0055 26.5 6.5 60 9-70 106-169 (796)
388 TIGR01040 V-ATPase_V1_B V-type 24.6 4.3E+02 0.0093 23.4 7.5 40 28-67 184-229 (466)
389 PF00697 PRAI: N-(5'phosphorib 23.9 3.2E+02 0.007 20.6 6.7 46 15-64 40-85 (197)
390 PRK00676 hemA glutamyl-tRNA re 23.7 3.8E+02 0.0081 22.6 6.8 88 23-136 172-268 (338)
391 cd06293 PBP1_LacI_like_11 Liga 22.9 2.1E+02 0.0046 21.7 5.0 33 29-61 95-127 (269)
392 TIGR03305 alt_F1F0_F1_bet alte 22.8 5.2E+02 0.011 22.6 8.3 21 135-157 273-293 (449)
393 PF14417 MEDS: MEDS: MEthanoge 22.8 1.5E+02 0.0032 22.2 4.0 27 22-48 44-70 (191)
394 PF11823 DUF3343: Protein of u 22.6 2.1E+02 0.0045 17.9 4.3 30 26-56 2-31 (73)
395 COG2897 SseA Rhodanese-related 22.5 1.9E+02 0.0041 23.7 4.8 38 22-59 231-268 (285)
396 PF01591 6PF2K: 6-phosphofruct 22.2 3.6E+02 0.0078 21.1 6.2 39 36-75 82-121 (222)
397 PF03853 YjeF_N: YjeF-related 22.2 3.2E+02 0.007 20.0 7.3 53 22-75 22-80 (169)
398 PF13086 AAA_11: AAA domain; P 21.9 2.8E+02 0.0061 20.3 5.4 39 9-47 32-75 (236)
399 TIGR03496 FliI_clade1 flagella 21.9 5.2E+02 0.011 22.3 9.6 23 134-156 267-289 (411)
400 PRK09860 putative alcohol dehy 21.7 4.9E+02 0.011 21.9 7.8 49 26-75 32-87 (383)
401 COG0462 PrsA Phosphoribosylpyr 21.7 4.8E+02 0.01 21.8 7.1 58 24-108 213-275 (314)
402 PRK15327 type III secretion sy 21.7 5.3E+02 0.011 22.3 9.9 65 7-74 167-240 (393)
403 TIGR03498 FliI_clade3 flagella 21.5 5.4E+02 0.012 22.3 9.5 23 134-156 270-292 (418)
404 PLN02363 phosphoribosylanthran 21.5 4.3E+02 0.0093 21.2 7.0 52 8-64 85-136 (256)
405 PF09547 Spore_IV_A: Stage IV 21.3 3.8E+02 0.0083 23.7 6.5 50 25-74 180-234 (492)
406 PRK03092 ribose-phosphate pyro 21.3 4.4E+02 0.0095 21.6 6.7 48 24-75 200-252 (304)
407 COG4152 ABC-type uncharacteriz 21.3 3E+02 0.0064 22.7 5.5 36 13-48 167-203 (300)
408 PF08704 GCD14: tRNA methyltra 21.2 92 0.002 24.9 2.6 28 23-50 137-164 (247)
409 TIGR00290 MJ0570_dom MJ0570-re 21.0 2.2E+02 0.0048 22.4 4.7 27 34-62 70-96 (223)
410 cd05795 Ribosomal_P0_L10e Ribo 21.0 3.3E+02 0.0071 20.3 5.5 32 113-144 103-137 (175)
411 CHL00059 atpA ATP synthase CF1 20.8 2.5E+02 0.0054 24.9 5.4 55 9-65 182-247 (485)
412 PF10740 DUF2529: Protein of u 20.7 1.2E+02 0.0026 23.1 3.0 32 25-57 82-115 (172)
413 PRK05922 type III secretion sy 20.7 5.7E+02 0.012 22.3 8.6 22 133-156 286-307 (434)
414 PRK04034 rps8p 30S ribosomal p 20.6 3.2E+02 0.007 19.4 5.5 48 9-56 5-52 (130)
415 cd01133 F1-ATPase_beta F1 ATP 20.5 3.1E+02 0.0067 22.3 5.6 57 9-67 111-179 (274)
416 cd01452 VWA_26S_proteasome_sub 20.5 3.9E+02 0.0085 20.3 6.7 48 26-75 108-160 (187)
417 cd00291 SirA_YedF_YeeD SirA, Y 20.4 2.1E+02 0.0046 17.2 5.7 46 10-57 12-57 (69)
418 KOG1404 Alanine-glyoxylate ami 20.3 2.4E+02 0.0052 24.6 5.0 37 12-48 95-131 (442)
419 PRK14178 bifunctional 5,10-met 20.2 4.9E+02 0.011 21.3 7.3 50 8-59 136-185 (279)
420 cd06290 PBP1_LacI_like_9 Ligan 20.1 2.9E+02 0.0063 20.8 5.3 32 30-61 95-126 (265)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1e-31 Score=229.99 Aligned_cols=121 Identities=21% Similarity=0.350 Sum_probs=110.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+..+|.++|..+. ...+.|+||||+|+++|++|+..|+..+ +.+..|||+.++.+|..+|++|++|
T Consensus 325 K~~~l~~lL~~~~--~~~~~KvIIFc~tkr~~~~l~~~l~~~~-~~a~~iHGd~sQ~eR~~~L~~FreG----------- 390 (519)
T KOG0331|consen 325 KLRKLGKLLEDIS--SDSEGKVIIFCETKRTCDELARNLRRKG-WPAVAIHGDKSQSERDWVLKGFREG----------- 390 (519)
T ss_pred HHHHHHHHHHHHh--ccCCCcEEEEecchhhHHHHHHHHHhcC-cceeeecccccHHHHHHHHHhcccC-----------
Confidence 4556667777665 4567899999999999999999999988 5999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
+..||||||+ ++||||+++|++|||||+|.++++|+||+||+|| +.|.+++|++.
T Consensus 391 ------------~~~vLVATdV----AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~ 447 (519)
T KOG0331|consen 391 ------------KSPVLVATDV----AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTS 447 (519)
T ss_pred ------------CcceEEEccc----ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeH
Confidence 8999999999 9999999999999999999999999999999977 67999999874
No 2
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.9e-31 Score=211.76 Aligned_cols=121 Identities=22% Similarity=0.411 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+++++.+-|..+.. ...-.+++|||||++.+++|.+.+++.+ +.+..+||+|++++|.+++++||.|
T Consensus 249 ~EewKfdtLcdLYd-~LtItQavIFcnTk~kVdwLtekm~~~n-ftVssmHGDm~qkERd~im~dFRsg----------- 315 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYD-TLTITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMEQKERDKIMNDFRSG----------- 315 (400)
T ss_pred hhhhhHhHHHHHhh-hhehheEEEEecccchhhHHHHHHHhhC-ceeeeccCCcchhHHHHHHHHhhcC-----------
Confidence 45555555555554 5556899999999999999999999998 5999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
+.+|||+||+ .+||+|+|.|++|||||+|.+.+.|+||+||. .++.|.+|+||.
T Consensus 316 ------------~SrvLitTDV----waRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk 371 (400)
T KOG0328|consen 316 ------------KSRVLITTDV----WARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVK 371 (400)
T ss_pred ------------CceEEEEech----hhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEec
Confidence 8999999999 99999999999999999999999999999999 567899999984
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.6e-29 Score=219.28 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=108.6
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.++|..++. .....++||||+|+..++.|+..|...| +++..|||+|++++|.+++++|++|
T Consensus 259 ~k~~~L~~ll~-~~~~~~~IVF~~tk~~~~~l~~~l~~~g-~~~~~lhG~l~q~~R~~~l~~F~~g-------------- 322 (513)
T COG0513 259 EKLELLLKLLK-DEDEGRVIVFVRTKRLVEELAESLRKRG-FKVAALHGDLPQEERDRALEKFKDG-------------- 322 (513)
T ss_pred HHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHHCC-CeEEEecCCCCHHHHHHHHHHHHcC--------------
Confidence 37777777777 4455689999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.+||||||+ ++||||+++|++|||||+|.++++|+||+||+|| ++|.+++|++
T Consensus 323 ---------~~~vLVaTDv----aaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~ 378 (513)
T COG0513 323 ---------ELRVLVATDV----AARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVT 378 (513)
T ss_pred ---------CCCEEEEech----hhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeC
Confidence 8999999999 9999999999999999999999999999999955 5799999885
No 4
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.2e-29 Score=206.54 Aligned_cols=114 Identities=25% Similarity=0.411 Sum_probs=105.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.|+.||+ +..+..+|||||+..++++++-.|+..| +.+..|||+|++..|...++.|+++
T Consensus 290 yLV~ll~-----e~~g~s~iVF~~t~~tt~~la~~L~~lg-~~a~~LhGqmsq~~Rlg~l~~Fk~~-------------- 349 (476)
T KOG0330|consen 290 YLVYLLN-----ELAGNSVIVFCNTCNTTRFLALLLRNLG-FQAIPLHGQMSQSKRLGALNKFKAG-------------- 349 (476)
T ss_pred hHHHHHH-----hhcCCcEEEEEeccchHHHHHHHHHhcC-cceecccchhhHHHHHHHHHHHhcc--------------
Confidence 4455555 5556999999999999999999999999 6999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
...||+|||+ ++||+|+|.|++|||||+|.+..+||||+||+ .+++|.+|++|+
T Consensus 350 ---------~r~iLv~TDV----aSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330|consen 350 ---------ARSILVCTDV----ASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred ---------CCcEEEecch----hcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEe
Confidence 8999999999 99999999999999999999999999999999 556799999986
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.96 E-value=5.8e-29 Score=211.04 Aligned_cols=111 Identities=18% Similarity=0.342 Sum_probs=103.5
Q ss_pred HHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 18 VVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 18 l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
+++ .....++|||+|+++.|+.|++.|.+.| +++..|||+.++++|..+|+.|+.+
T Consensus 511 il~-~~~~ppiIIFvN~kk~~d~lAk~LeK~g-~~~~tlHg~k~qeQRe~aL~~fr~~---------------------- 566 (673)
T KOG0333|consen 511 ILE-SNFDPPIIIFVNTKKGADALAKILEKAG-YKVTTLHGGKSQEQRENALADFREG---------------------- 566 (673)
T ss_pred HHH-hCCCCCEEEEEechhhHHHHHHHHhhcc-ceEEEeeCCccHHHHHHHHHHHHhc----------------------
Confidence 444 4467899999999999999999999999 6999999999999999999999998
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
...||||||+ ++||||+|+|++|||||++.++++|+|||||+|| +.|.+|+|++.
T Consensus 567 -t~dIlVaTDv----AgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 567 -TGDILVATDV----AGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred -CCCEEEEecc----cccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 8999999999 9999999999999999999999999999999955 56999999873
No 6
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.6e-28 Score=198.78 Aligned_cols=124 Identities=22% Similarity=0.385 Sum_probs=114.5
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
|+++..++..|..++. ..+-.++||||||..++|.|++.+.+.| ..++++|+.|.++.|.+++..|++|
T Consensus 303 fV~e~qKvhCLntLfs-kLqINQsIIFCNS~~rVELLAkKITelG-yscyyiHakM~Q~hRNrVFHdFr~G--------- 371 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFS-KLQINQSIIFCNSTNRVELLAKKITELG-YSCYYIHAKMAQEHRNRVFHDFRNG--------- 371 (459)
T ss_pred eechhhhhhhHHHHHH-HhcccceEEEeccchHhHHHHHHHHhcc-chhhHHHHHHHHhhhhhhhhhhhcc---------
Confidence 5566677778887777 6777999999999999999999999999 5999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEEe
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIILL 157 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~~ 157 (159)
.++.|||||+ +.||||++.|++|||||+|.++++|+||+||.||- -|.+|++++.
T Consensus 372 --------------~crnLVctDL----~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLity 428 (459)
T KOG0326|consen 372 --------------KCRNLVCTDL----FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITY 428 (459)
T ss_pred --------------ccceeeehhh----hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEeh
Confidence 8999999999 99999999999999999999999999999999665 5999999974
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=2.4e-27 Score=200.75 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=107.6
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
...+.+..+|..++. .....++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|++|
T Consensus 237 ~~~~~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~v~~lhg~~~~~~R~~~l~~F~~g---------- 304 (423)
T PRK04837 237 PSNEEKMRLLQTLIE-EEWPDRAIIFANTKHRCEEIWGHLAADG-HRVGLLTGDVAQKKRLRILEEFTRG---------- 304 (423)
T ss_pred CCHHHHHHHHHHHHH-hcCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCChhHHHHHHHHHHcC----------
Confidence 334445555555665 4456899999999999999999999988 6999999999999999999999999
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+++||||||+ ++||+|+|++++|||||+|.++++|+||+||+||. .|.+++|++
T Consensus 305 -------------~~~vLVaTdv----~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~ 360 (423)
T PRK04837 305 -------------DLDILVATDV----AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLAC 360 (423)
T ss_pred -------------CCcEEEEech----hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeC
Confidence 8999999999 99999999999999999999999999999999665 578888764
No 8
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.9e-27 Score=193.23 Aligned_cols=119 Identities=22% Similarity=0.368 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.-.+..+|...-. + ....++||+|+..+|+.|+..|+..+ +.+..+|+.|++.+|...|.+|+.+
T Consensus 239 daYLv~~Lr~~~~-~-~~~simIFvnttr~cQ~l~~~l~~le-~r~~~lHs~m~Q~eR~~aLsrFrs~------------ 303 (442)
T KOG0340|consen 239 DAYLVHLLRDFEN-K-ENGSIMIFVNTTRECQLLSMTLKNLE-VRVVSLHSQMPQKERLAALSRFRSN------------ 303 (442)
T ss_pred HHHHHHHHhhhhh-c-cCceEEEEeehhHHHHHHHHHHhhhc-eeeeehhhcchHHHHHHHHHHHhhc------------
Confidence 3455666664432 2 56899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
..+||||||+ ++||+|+|.|++|||||+|++|.+|+||+||+ +++.|.+||||+
T Consensus 304 -----------~~~iliaTDV----AsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt 359 (442)
T KOG0340|consen 304 -----------AARILIATDV----ASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVT 359 (442)
T ss_pred -----------CccEEEEech----hhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEec
Confidence 8999999999 99999999999999999999999999999999 677899999986
No 9
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.8e-26 Score=189.61 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. ...-.+.||||.|++++.+|+..|+..| ..+..+||+|..++|.+++++|+.|
T Consensus 314 ~~~K~~~l~~lyg-~~tigqsiIFc~tk~ta~~l~~~m~~~G-h~V~~l~G~l~~~~R~~ii~~Fr~g------------ 379 (477)
T KOG0332|consen 314 RDDKYQALVNLYG-LLTIGQSIIFCHTKATAMWLYEEMRAEG-HQVSLLHGDLTVEQRAAIIDRFREG------------ 379 (477)
T ss_pred hhhHHHHHHHHHh-hhhhhheEEEEeehhhHHHHHHHHHhcC-ceeEEeeccchhHHHHHHHHHHhcC------------
Confidence 4444555555555 4455889999999999999999999999 5999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
..+|||+|++ .+||||++.|++|||||+|- ++++|+||+||+ .++.|.+|+||.
T Consensus 380 -----------~~kVLitTnV----~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~ 441 (477)
T KOG0332|consen 380 -----------KEKVLITTNV----CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVD 441 (477)
T ss_pred -----------cceEEEEech----hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeec
Confidence 8999999999 99999999999999999994 689999999999 556799999873
No 10
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=3.8e-26 Score=195.44 Aligned_cols=122 Identities=19% Similarity=0.293 Sum_probs=109.0
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
...+.+.+++..++. ....+++|||||+++.++.+++.|...+ +.+..+||+|++++|.+++++|++|
T Consensus 227 ~~~~~k~~~l~~l~~-~~~~~~~lVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g---------- 294 (456)
T PRK10590 227 VDKKRKRELLSQMIG-KGNWQQVLVFTRTKHGANHLAEQLNKDG-IRSAAIHGNKSQGARTRALADFKSG---------- 294 (456)
T ss_pred cCHHHHHHHHHHHHH-cCCCCcEEEEcCcHHHHHHHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHcC----------
Confidence 344455667776665 5566899999999999999999999988 7999999999999999999999998
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+++||||||+ ++||+|+|+|++|||||+|.++.+|+||+||++|. .|.+++|++
T Consensus 295 -------------~~~iLVaTdv----~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~ 350 (456)
T PRK10590 295 -------------DIRVLVATDI----AARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC 350 (456)
T ss_pred -------------CCcEEEEccH----HhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEec
Confidence 8999999999 99999999999999999999999999999999764 578887764
No 11
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=3.9e-26 Score=199.30 Aligned_cols=105 Identities=22% Similarity=0.365 Sum_probs=98.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++++.++.|++.|+..+ +.+..+||++++++|..++++|++| +.+||
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~g-~~~~~ihg~~~~~eR~~il~~F~~G-----------------------~~~IL 431 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLDG-WPALCIHGDKKQEERTWVLNEFKTG-----------------------KSPIM 431 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHcC-CcEEEEECCCcHHHHHHHHHHHhcC-----------------------CCcEE
Confidence 56899999999999999999999887 6999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
||||+ ++||||+++|++|||||+|.++++|+||+||+||. .|.+++|++
T Consensus 432 VaTdv----~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~ 482 (545)
T PTZ00110 432 IATDV----ASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLT 482 (545)
T ss_pred EEcch----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEC
Confidence 99999 99999999999999999999999999999999664 588888764
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=6.3e-26 Score=198.98 Aligned_cols=120 Identities=19% Similarity=0.322 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+..+|..++. ...++++||||||++.++.|++.|.+.+ +.+..+||+|++.+|.++++.|+++
T Consensus 241 ~~~k~~~L~~ll~-~~~~~k~LVF~nt~~~ae~l~~~L~~~g-~~v~~lhg~l~~~eR~~il~~Fr~G------------ 306 (572)
T PRK04537 241 DEEKQTLLLGLLS-RSEGARTMVFVNTKAFVERVARTLERHG-YRVGVLSGDVPQKKRESLLNRFQKG------------ 306 (572)
T ss_pred HHHHHHHHHHHHh-cccCCcEEEEeCCHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHHcC------------
Confidence 3444444444555 4567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+++||||||+ ++||||+++|++|||||+|.++++|+||+||++| ..|.+++|++
T Consensus 307 -----------~~~VLVaTdv----~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 307 -----------QLEILVATDV----AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred -----------CCeEEEEehh----hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEec
Confidence 8999999999 9999999999999999999999999999999966 4588888874
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=6.6e-26 Score=193.78 Aligned_cols=118 Identities=23% Similarity=0.358 Sum_probs=104.9
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.+.+..++. ...+.++|||||+++.++.+++.|.+.+ +.+..+||+|++++|..+++.|++|
T Consensus 228 ~k~~~l~~ll~-~~~~~~~lVF~~t~~~~~~l~~~L~~~~-~~v~~~hg~~~~~eR~~~l~~F~~g-------------- 291 (460)
T PRK11776 228 ERLPALQRLLL-HHQPESCVVFCNTKKECQEVADALNAQG-FSALALHGDLEQRDRDQVLVRFANR-------------- 291 (460)
T ss_pred HHHHHHHHHHH-hcCCCceEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHcC--------------
Confidence 34455555554 4456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.++|||||+ ++||+|+|++++|||||+|.+++.|+||+||+||.+ |.+++|+.
T Consensus 292 ---------~~~vLVaTdv----~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~ 347 (460)
T PRK11776 292 ---------SCSVLVATDV----AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVA 347 (460)
T ss_pred ---------CCcEEEEecc----cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEc
Confidence 8999999999 999999999999999999999999999999997754 77777653
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=1.4e-25 Score=190.34 Aligned_cols=120 Identities=17% Similarity=0.291 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.++|..++. .....++|||||+++.++.+++.|+..+ +.+..+||+|++++|..++++|++|
T Consensus 229 ~~~k~~~l~~l~~-~~~~~~~lVF~~s~~~~~~l~~~L~~~~-~~~~~l~g~~~~~~R~~~l~~f~~G------------ 294 (434)
T PRK11192 229 LEHKTALLCHLLK-QPEVTRSIVFVRTRERVHELAGWLRKAG-INCCYLEGEMVQAKRNEAIKRLTDG------------ 294 (434)
T ss_pred HHHHHHHHHHHHh-cCCCCeEEEEeCChHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHhCC------------
Confidence 4556677777776 5556899999999999999999999987 7999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+++||||||+ ++||+|+|++++|||||+|.+...|+||+||+||. .|.+++|+.
T Consensus 295 -----------~~~vLVaTd~----~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~ 350 (434)
T PRK11192 295 -----------RVNVLVATDV----AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVE 350 (434)
T ss_pred -----------CCcEEEEccc----cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEec
Confidence 8999999999 99999999999999999999999999999999775 477777763
No 15
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=8.8e-26 Score=191.35 Aligned_cols=123 Identities=21% Similarity=0.327 Sum_probs=107.1
Q ss_pred CcHHHHHHHHHHHHccC-------CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccc
Q 031433 6 TFQETLVELLHLVVAGR-------RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMK 78 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~-------~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~ 78 (159)
.+.++..+|++.+.... ...++++|||++++.+..|+.+|...+ +.+..+||+.++.+|.++++.|+.|
T Consensus 311 ~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-~~~~sIhg~~tq~er~~al~~Fr~g--- 386 (482)
T KOG0335|consen 311 NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG-YPAKSIHGDRTQIEREQALNDFRNG--- 386 (482)
T ss_pred cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC-CCceeecchhhhhHHHHHHHHhhcC---
Confidence 34455555665444322 223589999999999999999999998 6999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc--CCCCeEEEEEE
Q 031433 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AAGTSFSDIIL 156 (159)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~--~~~g~~i~~v~ 156 (159)
+.++||||++ ++||+|+++|+||||||+|.+..+|+|||||+| +++|.+++|+.
T Consensus 387 --------------------~~pvlVaT~V----aaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 387 --------------------KAPVLVATNV----AARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred --------------------CcceEEEehh----hhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 8999999999 999999999999999999999999999999994 46699999874
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=2.3e-25 Score=193.44 Aligned_cols=106 Identities=21% Similarity=0.309 Sum_probs=97.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...++|||||++..++.+++.|....++.+..+||+|++++|..++++|++| +.+||
T Consensus 366 ~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-----------------------~~~IL 422 (518)
T PLN00206 366 FKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-----------------------EVPVI 422 (518)
T ss_pred cCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-----------------------CCCEE
Confidence 3468999999999999999999864337999999999999999999999999 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
||||+ ++||+|+|+|++|||||+|.++.+|+||+||+||. .|.+++|++
T Consensus 423 VaTdv----l~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 423 VATGV----LGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred EEecH----hhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEc
Confidence 99999 99999999999999999999999999999999775 577887764
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=8.2e-25 Score=187.88 Aligned_cols=117 Identities=24% Similarity=0.340 Sum_probs=104.7
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
...+++..++. .....++||||+++++++.+++.|.+.+ +.+..+||++++++|.+++++|++|
T Consensus 321 ~k~~~l~~ll~-~~~~~~~IVF~~s~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~Fr~G-------------- 384 (475)
T PRK01297 321 DKYKLLYNLVT-QNPWERVMVFANRKDEVRRIEERLVKDG-INAAQLSGDVPQHKRIKTLEGFREG-------------- 384 (475)
T ss_pred hHHHHHHHHHH-hcCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHhCC--------------
Confidence 34455555655 4556799999999999999999999988 6999999999999999999999999
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
++++|||||+ ++||||++++++|||||+|.++.+|+||+||+||.+ |.+++|+
T Consensus 385 ---------~~~vLvaT~~----l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 385 ---------KIRVLVATDV----AGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred ---------CCcEEEEccc----cccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEe
Confidence 8999999999 999999999999999999999999999999997764 6777765
No 18
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=9.8e-25 Score=187.39 Aligned_cols=116 Identities=24% Similarity=0.399 Sum_probs=101.7
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+++..+.. ..+++++||||+|++.++.+++.|++.+ +.+..+||+|++++|.+++++|++|
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g-~~~~~~H~~l~~~eR~~i~~~F~~g--------------- 275 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLG-IAAGAYHAGLEISARDDVHHKFQRD--------------- 275 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcC-CCeeEeeCCCCHHHHHHHHHHHHcC---------------
Confidence 3445544433 4456788999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+++|||||++ +++|+|+|+|++|||||+|.+++.|+||+||+||.+ |.++.|.
T Consensus 276 --------~~~vLVaT~~----~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 276 --------EIQVVVATVA----FGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred --------CCcEEEEech----hhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 8999999999 999999999999999999999999999999998765 5555543
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=1.3e-24 Score=192.43 Aligned_cols=113 Identities=18% Similarity=0.288 Sum_probs=101.3
Q ss_pred HHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 15 LHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 15 l~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
|..++. .....++||||+|+..++.|++.|...+ +.+..+||+|++.+|.+++++|+.|
T Consensus 236 L~~~L~-~~~~~~~IVF~~tk~~a~~l~~~L~~~g-~~~~~lhgd~~q~~R~~il~~Fr~G------------------- 294 (629)
T PRK11634 236 LVRFLE-AEDFDAAIIFVRTKNATLEVAEALERNG-YNSAALNGDMNQALREQTLERLKDG------------------- 294 (629)
T ss_pred HHHHHH-hcCCCCEEEEeccHHHHHHHHHHHHhCC-CCEEEeeCCCCHHHHHHHHHHHhCC-------------------
Confidence 333443 3445799999999999999999999998 6999999999999999999999998
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+++||||||+ ++||||+|+|++|||||+|.++++|+||+||++|.+ |.++.|+.
T Consensus 295 ----~~~ILVATdv----~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 295 ----RLDILIATDV----AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred ----CCCEEEEcch----HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 8999999999 999999999999999999999999999999997654 77777763
No 20
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=7.2e-25 Score=182.36 Aligned_cols=121 Identities=22% Similarity=0.334 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...+.++.+.+.+...+..|+||||.++..++.|+.-|.-.| +.+..|||+-++.+|+..++.|+.|
T Consensus 448 d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~g-i~~q~lHG~r~Q~DrE~al~~~ksG------------ 514 (629)
T KOG0336|consen 448 DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKG-ISSQSLHGNREQSDREMALEDFKSG------------ 514 (629)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcc-cchhhccCChhhhhHHHHHHhhhcC------------
Confidence 345567888788777788999999999999999999998888 8999999999999999999999999
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
.++|||+||+ ++||+|++++.||+|||+|.+++.|+||+||+|| +.|.+++|++
T Consensus 515 -----------~vrILvaTDl----aSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt 570 (629)
T KOG0336|consen 515 -----------EVRILVATDL----ASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLT 570 (629)
T ss_pred -----------ceEEEEEech----hhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEe
Confidence 8999999999 9999999999999999999999999999999955 5588888875
No 21
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.92 E-value=6.2e-25 Score=181.81 Aligned_cols=121 Identities=21% Similarity=0.356 Sum_probs=108.2
Q ss_pred cCcH-HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 5 FTFQ-ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 5 ~~~~-~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
|+++ .+++.||+-+.+ ...+++|||..+..++.+.++|--+| +.++.+||+.++++|...++.|+.|
T Consensus 403 yVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKG-VEavaIHGGKDQedR~~ai~afr~g-------- 470 (610)
T KOG0341|consen 403 YVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKG-VEAVAIHGGKDQEDRHYAIEAFRAG-------- 470 (610)
T ss_pred HHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHcc-ceeEEeecCcchhHHHHHHHHHhcC--------
Confidence 4443 456678887754 45799999999999999999999998 8999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+-.|||+||+ ++.|+|||++.||||||+|..++.|+||+||+||. .|.+..|+.
T Consensus 471 ---------------kKDVLVATDV----ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfIN 526 (610)
T KOG0341|consen 471 ---------------KKDVLVATDV----ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFIN 526 (610)
T ss_pred ---------------CCceEEEecc----hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeec
Confidence 8999999999 99999999999999999999999999999999665 588887763
No 22
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.91 E-value=8.9e-25 Score=184.27 Aligned_cols=112 Identities=19% Similarity=0.289 Sum_probs=100.4
Q ss_pred HHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 17 LVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 17 ~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+++.....+|+||||.|...+.++++.|+... +.+.-+||++++..|..+..+|++.
T Consensus 322 ~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d-lpv~eiHgk~~Q~kRT~~~~~F~ka--------------------- 379 (543)
T KOG0342|consen 322 TFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID-LPVLEIHGKQKQNKRTSTFFEFCKA--------------------- 379 (543)
T ss_pred HHHHHhcCCceEEEEechhhHHHHHHHHHhhcC-CchhhhhcCCcccccchHHHHHhhc---------------------
Confidence 355424444999999999999999999999886 8999999999999999999999998
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
+.-||+|||+ ++||+|+|+|++||+||+|.++++||||+||++|.++.+-+++.
T Consensus 380 --esgIL~cTDV----aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~ 433 (543)
T KOG0342|consen 380 --ESGILVCTDV----AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLL 433 (543)
T ss_pred --ccceEEecch----hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEE
Confidence 8999999999 99999999999999999999999999999999887755555443
No 23
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=4.5e-24 Score=195.52 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=98.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...+.+.||||++++.++.+++.|+..| +.+..+||+|++++|..++++|+.| +++
T Consensus 677 ~~~~esgIIYC~SRke~E~LAe~L~~~G-ika~~YHAGLs~eeR~~vqe~F~~G-----------------------ei~ 732 (1195)
T PLN03137 677 NHFDECGIIYCLSRMDCEKVAERLQEFG-HKAAFYHGSMDPAQRAFVQKQWSKD-----------------------EIN 732 (1195)
T ss_pred cccCCCceeEeCchhHHHHHHHHHHHCC-CCeeeeeCCCCHHHHHHHHHHHhcC-----------------------CCc
Confidence 4446789999999999999999999998 7999999999999999999999999 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
|||||++ ++||||+|+|++|||||+|.+++.|+||+||+||.+ |.++.|.
T Consensus 733 VLVATdA----FGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 733 IICATVA----FGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred EEEEech----hhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999 999999999999999999999999999999998876 5555554
No 24
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=6.3e-24 Score=177.80 Aligned_cols=118 Identities=24% Similarity=0.419 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+...+.+..+.. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|..+++.|++|
T Consensus 252 ~~~~~~l~~~~~-~~~~~~~ivF~~t~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~R~~i~~~f~~g------------- 316 (401)
T PTZ00424 252 EWKFDTLCDLYE-TLTITQAIIYCNTRRKVDYLTKKMHERD-FTVSCMHGDMDQKDRDLIMREFRSG------------- 316 (401)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEEecCcHHHHHHHHHHHHCC-CcEEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 334444444544 4456789999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+++|||||++ +++|+|+|++++||+||+|.+...|+||+||+||. .|.++.|+
T Consensus 317 ----------~~~vLvaT~~----l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~ 371 (401)
T PTZ00424 317 ----------STRVLITTDL----LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFV 371 (401)
T ss_pred ----------CCCEEEEccc----ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEE
Confidence 8999999999 99999999999999999999999999999999775 47777765
No 25
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=9.4e-24 Score=186.40 Aligned_cols=106 Identities=20% Similarity=0.368 Sum_probs=98.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...++++||||+|++.++.+++.|++.+ +.+..+||+|++++|.++++.|+.+ +++
T Consensus 233 ~~~~~~~IIFc~tr~~~e~la~~L~~~g-~~v~~~Ha~l~~~~R~~i~~~F~~g-----------------------~~~ 288 (607)
T PRK11057 233 EQRGKSGIIYCNSRAKVEDTAARLQSRG-ISAAAYHAGLDNDVRADVQEAFQRD-----------------------DLQ 288 (607)
T ss_pred hcCCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEecCCCCHHHHHHHHHHHHCC-----------------------CCC
Confidence 3456899999999999999999999998 7999999999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
|||||++ +++|||+|+|++|||||+|.+.++|+||+||+||.+ |.++.|+
T Consensus 289 VLVaT~a----~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 289 IVVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred EEEEech----hhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 9999999 999999999999999999999999999999998865 5555554
No 26
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.91 E-value=8.6e-24 Score=180.74 Aligned_cols=127 Identities=18% Similarity=0.270 Sum_probs=112.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
++.++.+.++.+|..+.+ .+..+|.|||..|++.+.++++.+.+. +++....|||.|.+..|..++++|.+.
T Consensus 292 y~~v~l~~Ki~~L~sFI~-shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~------ 364 (758)
T KOG0343|consen 292 YVIVPLEDKIDMLWSFIK-SHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK------ 364 (758)
T ss_pred EEEEehhhHHHHHHHHHH-hccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh------
Confidence 445567778888887887 777899999999999999999999986 448999999999999999999999997
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
+.-||+|||+ ++||+|||.|++||+||.|.++++|+||+||++|.+..+-+++.|
T Consensus 365 -----------------~~~vLF~TDv----~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L 419 (758)
T KOG0343|consen 365 -----------------RAVVLFCTDV----AARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML 419 (758)
T ss_pred -----------------cceEEEeehh----hhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE
Confidence 7889999999 999999999999999999999999999999998776555555544
No 27
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=2.8e-23 Score=186.78 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=99.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC--------CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~--------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
...+++..+.. .+.++||||||++.++.+++.|++. + ..+..+||++++++|.+++++|++|
T Consensus 259 ~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~-~~v~~~hgg~~~~eR~~ie~~f~~G------ 328 (742)
T TIGR03817 259 EAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLA-ERVAAYRAGYLPEDRRELERALRDG------ 328 (742)
T ss_pred HHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccc-cchhheecCCCHHHHHHHHHHHHcC------
Confidence 34456665654 2579999999999999999998763 3 4788999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEE
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
++++|||||+ ++||||++++++|||||+|.+.++|+||+||+||.+ |.++.+
T Consensus 329 -----------------~i~vLVaTd~----lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v 382 (742)
T TIGR03817 329 -----------------ELLGVATTNA----LELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLV 382 (742)
T ss_pred -----------------CceEEEECch----HhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEE
Confidence 8999999999 999999999999999999999999999999998765 555544
No 28
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.2e-23 Score=174.41 Aligned_cols=120 Identities=18% Similarity=0.303 Sum_probs=105.3
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+++..+++.+ . ....+|+|||..|...+++....|... +...+..+||.|.+.+|.+++++|++.
T Consensus 239 a~eK~~~lv~~L-~-~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~---------- 306 (567)
T KOG0345|consen 239 ADEKLSQLVHLL-N-NNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKL---------- 306 (567)
T ss_pred HHHHHHHHHHHH-h-ccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhc----------
Confidence 445666666644 3 466799999999999999999999876 557999999999999999999999996
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDII 155 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v 155 (159)
+-.+|+|||+ ++||||+|+|++||+||+|.+++.|+||+||++| +.|.+|.|+
T Consensus 307 -------------~~~vl~~TDV----aARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 307 -------------SNGVLFCTDV----AARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred -------------cCceEEeehh----hhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 7889999999 9999999999999999999999999999999955 457777765
No 29
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3e-23 Score=170.73 Aligned_cols=104 Identities=24% Similarity=0.527 Sum_probs=99.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
-.+.+||||+++.+..+..+|...+ ..+..+|++|++.+|..++.+|+.| ..+|||
T Consensus 263 ~~q~~if~nt~r~v~~l~~~L~~~~-~~~s~~~~d~~q~~R~~~~~ef~~g-----------------------ssrvlI 318 (397)
T KOG0327|consen 263 VTQAVIFCNTRRKVDNLTDKLRAHG-FTVSAIHGDMEQNERDTLMREFRSG-----------------------SSRVLI 318 (397)
T ss_pred hhcceEEecchhhHHHHHHHHhhCC-ceEEEeecccchhhhhHHHHHhhcC-----------------------CceEEe
Confidence 4789999999999999999998888 6999999999999999999999999 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
+||+ ++||+|+.+++.|||||+|.+.++|+||+||+ .+++|.+++|++
T Consensus 319 ttdl----~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~ 368 (397)
T KOG0327|consen 319 TTDL----LARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVT 368 (397)
T ss_pred eccc----cccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeeh
Confidence 9999 99999999999999999999999999999999 667899999985
No 30
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.9e-23 Score=176.21 Aligned_cols=105 Identities=20% Similarity=0.313 Sum_probs=98.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...++|||+.|++.+..+.=.|.-.| +++.-|||.+++++|...++.|+.. ++.+|
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLlg-l~agElHGsLtQ~QRlesL~kFk~~-----------------------eidvL 480 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLLG-LKAGELHGSLTQEQRLESLEKFKKE-----------------------EIDVL 480 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHhh-chhhhhcccccHHHHHHHHHHHHhc-----------------------cCCEE
Confidence 35899999999999999988888888 8999999999999999999999998 99999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
||||+ ++||+|+++|..||||++|.+.+.|+||+||+ +++.|.+++|+.
T Consensus 481 iaTDv----AsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvg 531 (691)
T KOG0338|consen 481 IATDV----ASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVG 531 (691)
T ss_pred EEech----hhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEec
Confidence 99999 99999999999999999999999999999999 556688888874
No 31
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.1e-23 Score=180.03 Aligned_cols=105 Identities=24% Similarity=0.375 Sum_probs=96.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...+.++|||||+.+.+..|+-+|+..+ +....||+.|.+.+|.+.|++|++. ...
T Consensus 460 ~ryPGrTlVF~NsId~vKRLt~~L~~L~-i~p~~LHA~M~QKqRLknLEkF~~~-----------------------~~~ 515 (731)
T KOG0347|consen 460 TRYPGRTLVFCNSIDCVKRLTVLLNNLD-IPPLPLHASMIQKQRLKNLEKFKQS-----------------------PSG 515 (731)
T ss_pred eecCCceEEEechHHHHHHHHHHHhhcC-CCCchhhHHHHHHHHHHhHHHHhcC-----------------------CCe
Confidence 4456899999999999999999999998 8999999999999999999999997 788
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
||||||+ ++||+|+|+|.|||||.+|.+.+.|+||.||++|.+..++++
T Consensus 516 VLiaTDV----AARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsv 564 (731)
T KOG0347|consen 516 VLIATDV----AARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSV 564 (731)
T ss_pred EEEeehh----hhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEE
Confidence 9999999 999999999999999999999999999999997766444443
No 32
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=1.2e-22 Score=178.60 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=95.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||+|++.++.+++.|...+ +.+..+||+|+.++|..++++|++| +++||
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~g-~~~~~~H~~l~~~~R~~i~~~F~~g-----------------------~~~vl 278 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQG-ISALAYHAGLSNKVRAENQEDFLYD-----------------------DVKVM 278 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHcC-----------------------CCcEE
Confidence 36899999999999999999999988 7999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSD 153 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~ 153 (159)
|||++ +++|+|+|+|++|||||+|.+.+.|+||+||+||.+ +.++.
T Consensus 279 VaT~a----~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 279 VATNA----FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred EEech----hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 99999 999999999999999999999999999999998866 44443
No 33
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=1.5e-22 Score=173.62 Aligned_cols=119 Identities=20% Similarity=0.348 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
.+++.+.+ +.. .....+++||+.+.+++.+|.+.|.....+++.++||+.++.+|..++++|+.|
T Consensus 373 ~K~lA~rq-~v~-~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g------------- 437 (593)
T KOG0344|consen 373 GKLLALRQ-LVA-SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG------------- 437 (593)
T ss_pred hHHHHHHH-HHh-ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-------------
Confidence 34444444 444 445689999999999999999999544448999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
++.+|||||+ ++||+||.+|++|||||+|.+..+|+||+||+|| ++|.|+.|.+
T Consensus 438 ----------~IwvLicTdl----l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 438 ----------KIWVLICTDL----LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred ----------CeeEEEehhh----hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 8999999999 9999999999999999999999999999999955 5699999864
No 34
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.88 E-value=2.7e-22 Score=183.38 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=97.8
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
.+.|..++. ...+.|+||||+++++++.+.+.|+...++.+..+||+|++.+|.++++.|+++
T Consensus 481 i~~L~~~L~-~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~---------------- 543 (956)
T PRK04914 481 VEWLIDFLK-SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADE---------------- 543 (956)
T ss_pred HHHHHHHHH-hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcC----------------
Confidence 333333444 444789999999999999999999654237999999999999999999999985
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDI 154 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~ 154 (159)
++..+|||||++ +++|+|++.+++|||||+||+++.|.||+||++|. .+.+..+
T Consensus 544 -----~~~~~VLIsTdv----gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~ 599 (956)
T PRK04914 544 -----EDGAQVLLCSEI----GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIH 599 (956)
T ss_pred -----CCCccEEEechh----hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 125899999999 99999999999999999999999999999999554 3444433
No 35
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.88 E-value=7.1e-23 Score=171.34 Aligned_cols=142 Identities=15% Similarity=0.203 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.+|+++-++ .+++...-..|.|||+||.+.+-.|--.|...| ++...|+|+|+...|.+++++|.+|.+++..+...+
T Consensus 251 e~DKfllly-allKL~LI~gKsliFVNtIdr~YrLkLfLeqFG-iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s 328 (569)
T KOG0346|consen 251 EEDKFLLLY-ALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFG-IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDS 328 (569)
T ss_pred cchhHHHHH-HHHHHHHhcCceEEEEechhhhHHHHHHHHHhC-cHhhhhcccccccchhhHHHHhhCcceeEEEEccCc
Confidence 445544433 355545556899999999999999999999998 899999999999999999999999988776554311
Q ss_pred C----------CCCC----CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCe
Q 031433 87 S----------GDES----ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTS 150 (159)
Q Consensus 87 ~----------~~~~----~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~ 150 (159)
. |..+ +++..+++ -.--+.+ .+|||||+.|+.|||||+|.++..|+||+||+ +.++|.
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskk---K~D~E~G---VsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt 402 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKK---KLDKESG---VSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT 402 (569)
T ss_pred cchhhhhccccccccccCCCCcccccc---ccCchhc---hhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc
Confidence 0 1111 11111111 1111222 79999999999999999999999999999999 667899
Q ss_pred EEEEEE
Q 031433 151 FSDIIL 156 (159)
Q Consensus 151 ~i~~v~ 156 (159)
++|||+
T Consensus 403 alSfv~ 408 (569)
T KOG0346|consen 403 ALSFVS 408 (569)
T ss_pred eEEEec
Confidence 999985
No 36
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.2e-21 Score=166.21 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=111.5
Q ss_pred ceecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEE--Eee-------cCCCHHHHHHHHHHH
Q 031433 2 SVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS--SLH-------SDLAETERTLILEEF 72 (159)
Q Consensus 2 ~v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~--~l~-------~~~~~~~R~~~l~~F 72 (159)
.+-.++++.+.+++...++ .+.+.++|||++.+++++.+.++|.+.+ +.+. ++- .||++.++.+++++|
T Consensus 344 ~v~HPKl~~l~eilke~~~-k~~~~RvIVFT~yRdTae~i~~~L~~~~-~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 344 GVEHPKLEKLREILKEQLE-KNGDSRVIVFTEYRDTAEEIVNFLKKIG-IKARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred cCCCccHHHHHHHHHHHHh-cCCCceEEEEehhHhHHHHHHHHHHhcC-CcceeEEeeccccccccccCHHHHHHHHHHH
Confidence 3557889999999998887 6667999999999999999999999987 4553 222 469999999999999
Q ss_pred hcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeE
Q 031433 73 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSF 151 (159)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~ 151 (159)
++| ..+|||||++ +++|+|+|++++||.||+-.|+..++||.||+||. +|.+
T Consensus 422 r~G-----------------------e~nVLVaTSV----gEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv 474 (542)
T COG1111 422 RKG-----------------------EYNVLVATSV----GEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRV 474 (542)
T ss_pred hcC-----------------------CceEEEEccc----ccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeE
Confidence 999 8999999999 99999999999999999999999999999999775 5888
Q ss_pred EEEEE
Q 031433 152 SDIIL 156 (159)
Q Consensus 152 i~~v~ 156 (159)
+.+++
T Consensus 475 ~vLvt 479 (542)
T COG1111 475 VVLVT 479 (542)
T ss_pred EEEEe
Confidence 77664
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=2.2e-21 Score=177.24 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=91.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC-----CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~-----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+++||||||++.++.+++.|++.. ...+..+||+|++++|..++++|++| +
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-----------------------~ 340 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-----------------------E 340 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-----------------------C
Confidence 5799999999999999999998731 14799999999999999999999999 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCC
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGT 149 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g 149 (159)
+++||||+. +++|||++++++||+|+.|.++.+|+||+||+||+.|
T Consensus 341 i~vLVaTs~----Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g 386 (876)
T PRK13767 341 LKVVVSSTS----LELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLG 386 (876)
T ss_pred CeEEEECCh----HHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCC
Confidence 999999999 9999999999999999999999999999999987753
No 38
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=2e-21 Score=165.76 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=97.8
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---------------------CCccEEEeecCCCHHHHHHHH
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---------------------ADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---------------------~~i~~~~l~~~~~~~~R~~~l 69 (159)
|..+|....+ .....|+|||..+.+.+++=++.|+.. -..+++-|||+|++++|..++
T Consensus 412 Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f 490 (708)
T KOG0348|consen 412 LAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVF 490 (708)
T ss_pred HHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHH
Confidence 3344554555 445679999999999999877777643 024789999999999999999
Q ss_pred HHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--C
Q 031433 70 EEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--A 147 (159)
Q Consensus 70 ~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~ 147 (159)
+.|... .-.||+|||+ ++||+|+|+|.+||.||.|.++.+|+||+||++| .
T Consensus 491 ~~Fs~~-----------------------~~~VLLcTDV----AaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~ 543 (708)
T KOG0348|consen 491 QEFSHS-----------------------RRAVLLCTDV----AARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGE 543 (708)
T ss_pred Hhhccc-----------------------cceEEEehhh----hhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccC
Confidence 999997 5669999999 9999999999999999999999999999999955 4
Q ss_pred CCeEEEEE
Q 031433 148 GTSFSDII 155 (159)
Q Consensus 148 ~g~~i~~v 155 (159)
.|.++.|+
T Consensus 544 kG~alLfL 551 (708)
T KOG0348|consen 544 KGEALLFL 551 (708)
T ss_pred CCceEEEe
Confidence 57776665
No 39
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=3.6e-21 Score=169.92 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=97.4
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
.+..++...|.+.+......+.++||||+|++.++.+++.|.+.| +.+..|||++.+ |.+.+..|..+
T Consensus 453 ~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g-i~~~~Lhg~~~~--rE~~ii~~ag~--------- 520 (656)
T PRK12898 453 LTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG-LPHQVLNAKQDA--EEAAIVARAGQ--------- 520 (656)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEeeCCcHH--HHHHHHHHcCC---------
Confidence 334445445554433323346789999999999999999999998 799999998654 45555566655
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---CCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEEEE
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
+..|+||||+ ++||+|++ +|. +|||||+|.+...|.||+||+||.+ |.+++|
T Consensus 521 --------------~g~VlVATdm----AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~ 582 (656)
T PRK12898 521 --------------RGRITVATNM----AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI 582 (656)
T ss_pred --------------CCcEEEEccc----hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE
Confidence 5679999999 99999999 676 9999999999999999999997655 888887
Q ss_pred EEe
Q 031433 155 ILL 157 (159)
Q Consensus 155 v~~ 157 (159)
+++
T Consensus 583 is~ 585 (656)
T PRK12898 583 LSL 585 (656)
T ss_pred ech
Confidence 763
No 40
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.86 E-value=3.7e-21 Score=167.62 Aligned_cols=108 Identities=22% Similarity=0.385 Sum_probs=100.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.......||||.|++.++.++++|+..| +.+..+|++|+.++|..+.++|..+ +.+
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g-~~a~~YHaGl~~~eR~~~q~~f~~~-----------------------~~~ 282 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNG-ISAGAYHAGLSNEERERVQQAFLND-----------------------EIK 282 (590)
T ss_pred cccCCCeEEEEeeHHhHHHHHHHHHHCC-CceEEecCCCCHHHHHHHHHHHhcC-----------------------CCc
Confidence 4445778999999999999999999997 7999999999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
|+|||.+ +++|||-|+|++|||||+|.++++|.|-+||+||.+..+..++.+
T Consensus 283 iiVAT~A----FGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 283 VMVATNA----FGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred EEEEecc----ccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 9999999 999999999999999999999999999999999998777766543
No 41
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.86 E-value=1.5e-21 Score=169.60 Aligned_cols=119 Identities=16% Similarity=0.315 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+++.|..+++ ..+..++||||+....|+-++.+|...| +.+.++.|.|++.+|..+++++++-
T Consensus 257 rlklq~L~~vf~-~ipy~QAlVF~~~~sra~~~a~~L~ssG-~d~~~ISgaM~Q~~Rl~a~~~lr~f------------- 321 (980)
T KOG4284|consen 257 RLKLQKLTHVFK-SIPYVQALVFCDQISRAEPIATHLKSSG-LDVTFISGAMSQKDRLLAVDQLRAF------------- 321 (980)
T ss_pred HHHHHHHHHHHh-hCchHHHHhhhhhhhhhhHHHHHhhccC-CCeEEeccccchhHHHHHHHHhhhc-------------
Confidence 345566666776 7778999999999999999999999998 7999999999999999999999997
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
.++|||+||+ .+||||-+.|++|||.|.|.+-++|+|||||+||- .|.++.|+.
T Consensus 322 ----------~~rILVsTDL----taRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~ 377 (980)
T KOG4284|consen 322 ----------RVRILVSTDL----TARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLE 377 (980)
T ss_pred ----------eEEEEEecch----hhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEec
Confidence 8999999999 99999999999999999999999999999999654 577777653
No 42
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=5e-21 Score=171.98 Aligned_cols=124 Identities=17% Similarity=0.182 Sum_probs=103.6
Q ss_pred ecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 4 SFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 4 ~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
+.+..++...+++.+......+.++||||+|++.++.+++.|.+.| +.+..+||++.++++..+.++++.|
T Consensus 407 ~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g-i~~~~L~~~~~~~e~~~i~~ag~~g-------- 477 (790)
T PRK09200 407 FVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG-IPHNLLNAKNAAKEAQIIAEAGQKG-------- 477 (790)
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCccHHHHHHHHHcCCCC--------
Confidence 3445555555666554423568999999999999999999999998 7999999999998888777776553
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCC---CCCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEEE
Q 031433 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA---ISAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFSD 153 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~---~~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~ 153 (159)
.|+||||+ ++||+|+ ++|. +|||||+|.+...|+||+||+||.+ |.++.
T Consensus 478 -----------------~VlIATdm----AgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~ 536 (790)
T PRK09200 478 -----------------AVTVATNM----AGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF 536 (790)
T ss_pred -----------------eEEEEccc----hhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE
Confidence 69999999 9999999 6999 9999999999999999999997765 77787
Q ss_pred EEEe
Q 031433 154 IILL 157 (159)
Q Consensus 154 ~v~~ 157 (159)
|+++
T Consensus 537 ~is~ 540 (790)
T PRK09200 537 FISL 540 (790)
T ss_pred EEcc
Confidence 7763
No 43
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.7e-21 Score=163.51 Aligned_cols=126 Identities=19% Similarity=0.282 Sum_probs=114.2
Q ss_pred ceecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 2 SVSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 2 ~v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
+|......++..|++.|.+ .....++|||+-.+..++.++..|.-++ +++..+||+|.+.+|.++|.+|++.
T Consensus 446 ~V~~s~~~Kl~wl~~~L~~-f~S~gkvlifVTKk~~~e~i~a~Lklk~-~~v~llhgdkdqa~rn~~ls~fKkk------ 517 (731)
T KOG0339|consen 446 SVCPSEEKKLNWLLRHLVE-FSSEGKVLIFVTKKADAEEIAANLKLKG-FNVSLLHGDKDQAERNEVLSKFKKK------ 517 (731)
T ss_pred eeccCcHHHHHHHHHHhhh-hccCCcEEEEEeccCCHHHHHHHhcccc-ceeeeecCchhhHHHHHHHHHHhhc------
Confidence 4555667788888887776 5556899999999999999999999998 6999999999999999999999998
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
...|||+||+ ++||+|++++..|||||+-.+++.|.||+||++|. .|.+.++|+
T Consensus 518 -----------------~~~VlvatDv----aargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvT 573 (731)
T KOG0339|consen 518 -----------------RKPVLVATDV----AARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVT 573 (731)
T ss_pred -----------------CCceEEEeeH----hhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEec
Confidence 8999999999 99999999999999999999999999999999665 488888876
No 44
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.1e-21 Score=163.45 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=97.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHh-cC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVS-NL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~-~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.....++|+|+|+.+.+..+++.|+ .. ...++..++|.++...|.+.+++|..|
T Consensus 426 ~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g----------------------- 482 (620)
T KOG0350|consen 426 SNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG----------------------- 482 (620)
T ss_pred HhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-----------------------
Confidence 5567999999999999999999998 22 225788899999999999999999999
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc--CCCCeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL--AAGTSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~--~~~g~~i~~v~ 156 (159)
.+++|||||+ ++||||+.+|+.|||||+|.+...|+||+||++ ++.|.++++++
T Consensus 483 ~i~vLIcSD~----laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~ 538 (620)
T KOG0350|consen 483 DINVLICSDA----LARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLD 538 (620)
T ss_pred CceEEEehhh----hhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeec
Confidence 8999999999 999999999999999999999999999999994 45588888653
No 45
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=2.1e-20 Score=166.17 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=104.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+..+++.+......+.++||||+|++.++.|++.|.+.| +.+..+||++++.+|.+++++|+.|
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-i~~~~lh~~~~~~eR~~~l~~fr~G--------------- 491 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-IKVRYLHSEIDTLERVEIIRDLRLG--------------- 491 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-cceeeeeCCCCHHHHHHHHHHHhcC---------------
Confidence 344555444434567899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc-----CCCChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d-----~P~~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
++.|||||++ ++||+|+|++++||++| .|.+..+|+||+||++|. .|.++.|+.
T Consensus 492 --------~i~VLV~t~~----L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~ 551 (655)
T TIGR00631 492 --------EFDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYAD 551 (655)
T ss_pred --------CceEEEEcCh----hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEc
Confidence 8999999999 99999999999999999 899999999999999775 577777754
No 46
>PRK13766 Hef nuclease; Provisional
Probab=99.84 E-value=3.8e-20 Score=167.06 Aligned_cols=121 Identities=20% Similarity=0.248 Sum_probs=105.7
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC--------CCHHHHHHHHHHHhcccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD--------LAETERTLILEEFRHTAM 77 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~--------~~~~~R~~~l~~F~~~~~ 77 (159)
++.+.|.++|+.+.. ...+.++||||+++++++.|++.|...+ +.+..+||. |++.+|.+++++|+.+
T Consensus 347 pK~~~L~~il~~~~~-~~~~~kvlIF~~~~~t~~~L~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-- 422 (773)
T PRK13766 347 PKLEKLREIVKEQLG-KNPDSRIIVFTQYRDTAEKIVDLLEKEG-IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-- 422 (773)
T ss_pred hHHHHHHHHHHHHHh-cCCCCeEEEEeCcHHHHHHHHHHHHhCC-CceEEEEccccccccCCCCHHHHHHHHHHHHcC--
Confidence 345666777776654 4577999999999999999999998887 688999886 9999999999999998
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEE
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDII 155 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v 155 (159)
+.++||+|++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.++
T Consensus 423 ---------------------~~~vLvaT~~----~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~ 476 (773)
T PRK13766 423 ---------------------EFNVLVSTSV----AEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLI 476 (773)
T ss_pred ---------------------CCCEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEE
Confidence 8999999999 999999999999999999999999999999997753 5655554
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.84 E-value=2.3e-20 Score=175.95 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=91.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCC--------------------------------ccEEEeecCCCHHHHHHHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------ISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~--------------------------------i~~~~l~~~~~~~~R~~~l~~F 72 (159)
.+++||||||++.++.++..|++... ..+..+||+|++++|..+.+.|
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~f 323 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQAL 323 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHH
Confidence 58999999999999999999986410 1256889999999999999999
Q ss_pred hcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeE
Q 031433 73 RHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSF 151 (159)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~ 151 (159)
++| ++++||||+. +++|||++++++||||+.|.++.+|+||+||+|+.. +.+
T Consensus 324 K~G-----------------------~LrvLVATss----LELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s 376 (1490)
T PRK09751 324 KSG-----------------------ELRCVVATSS----LELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVS 376 (1490)
T ss_pred HhC-----------------------CceEEEeCcH----HHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCcc
Confidence 999 8999999999 999999999999999999999999999999998864 444
Q ss_pred EEEE
Q 031433 152 SDII 155 (159)
Q Consensus 152 i~~v 155 (159)
..++
T Consensus 377 ~gli 380 (1490)
T PRK09751 377 KGLF 380 (1490)
T ss_pred EEEE
Confidence 4443
No 48
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=5.4e-20 Score=163.70 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=103.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
..++..+......+.++||||+|++.++.|++.|.+.| +.+..+||++++.+|..++++|+.|
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g-i~~~~~h~~~~~~~R~~~l~~f~~g---------------- 495 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG-IKVRYLHSDIDTLERVEIIRDLRLG---------------- 495 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc-eeEEEEECCCCHHHHHHHHHHHHcC----------------
Confidence 34444443323457899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC-----CCChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~-----P~~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
++.|+|||+. +++|+|+|++++||++|. |.+...|+||+||+||. .|.+++|++
T Consensus 496 -------~i~vlV~t~~----L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 496 -------EFDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred -------CceEEEEeCH----HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 8999999999 999999999999999985 88999999999999665 588888875
No 49
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.83 E-value=2.4e-19 Score=127.01 Aligned_cols=98 Identities=29% Similarity=0.524 Sum_probs=92.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++.+.++.+.+.|.+.+ ..+..+||+++.++|..+++.|.++ ...+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~-----------------------~~~il 82 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPG-IKVAALHGDGSQEEREEVLKDFREG-----------------------EIVVL 82 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHHHcC-----------------------CCcEE
Confidence 57899999999999999999999876 6999999999999999999999998 79999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGT 149 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g 149 (159)
++|.. +++|+|++.+++||.++.|++...|+|++||++|.+.
T Consensus 83 i~t~~----~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 83 VATDV----IARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred EEcCh----hhcCcChhhCCEEEEeCCCCCHHHheecccccccCCC
Confidence 99999 9999999999999999999999999999999977653
No 50
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.82 E-value=3.8e-20 Score=121.84 Aligned_cols=78 Identities=27% Similarity=0.439 Sum_probs=73.5
Q ss_pred HHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC
Q 031433 43 SAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 122 (159)
Q Consensus 43 ~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v 122 (159)
+.|+..+ +.+..+||++++++|..++++|+.+ ...+||||++ +++|+|+|++
T Consensus 1 ~~L~~~~-~~~~~i~~~~~~~~r~~~~~~f~~~-----------------------~~~vli~t~~----~~~Gid~~~~ 52 (78)
T PF00271_consen 1 KFLEKKG-IKVAIIHGDMSQKERQEILKKFNSG-----------------------EIRVLIATDI----LGEGIDLPDA 52 (78)
T ss_dssp HHHHHTT-SSEEEESTTSHHHHHHHHHHHHHTT-----------------------SSSEEEESCG----GTTSSTSTTE
T ss_pred CChHHCC-CcEEEEECCCCHHHHHHHHHHhhcc-----------------------CceEEEeecc----cccccccccc
Confidence 3577777 7999999999999999999999998 7899999999 9999999999
Q ss_pred CeEEEccCCCChhHHHhhhhcccCCC
Q 031433 123 RVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 123 ~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
++||+|++|+++..|.|++||++|.+
T Consensus 53 ~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 53 SHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ccccccccCCCHHHHHHHhhcCCCCC
Confidence 99999999999999999999998864
No 51
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=1.5e-19 Score=161.63 Aligned_cols=124 Identities=17% Similarity=0.151 Sum_probs=103.2
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||||+|++.++.+++.|.+.| +.+..+||++.+++|..+.++|+.
T Consensus 402 i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~g-i~~~~L~a~~~~~E~~ii~~ag~~-------- 472 (762)
T TIGR03714 402 IYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREG-IPHNLLNAQNAAKEAQIIAEAGQK-------- 472 (762)
T ss_pred EEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCCChHHHHHHHHHcCCC--------
Confidence 45555666666666554434567999999999999999999999998 799999999999888777665555
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---------CCCeEEEccCCCChhHHHhhhhcccCCC--CeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---------SARVLINYELPTKKETYIRRMTTCLAAG--TSF 151 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---------~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~ 151 (159)
..|+||||+ ++||+|++ ++++|++|++|....+ .||+||+||.+ |.+
T Consensus 473 -----------------g~VlIATdm----AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 473 -----------------GAVTVATSM----AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred -----------------CeEEEEccc----cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 369999999 99999999 9999999999998877 99999997765 777
Q ss_pred EEEEEe
Q 031433 152 SDIILL 157 (159)
Q Consensus 152 i~~v~~ 157 (159)
+.|+++
T Consensus 531 ~~~is~ 536 (762)
T TIGR03714 531 QFFVSL 536 (762)
T ss_pred EEEEcc
Confidence 777753
No 52
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.82 E-value=7.2e-20 Score=165.08 Aligned_cols=121 Identities=20% Similarity=0.369 Sum_probs=107.4
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+.+++.+|+..|-. .....++||||.+...|+.+.+.|.+.| +.+..|||+.++.+|..+++.|+++
T Consensus 596 e~eKf~kL~eLl~e-~~e~~~tiiFv~~qe~~d~l~~~L~~ag-~~~~slHGgv~q~dR~sti~dfK~~----------- 662 (997)
T KOG0334|consen 596 ENEKFLKLLELLGE-RYEDGKTIIFVDKQEKADALLRDLQKAG-YNCDSLHGGVDQHDRSSTIEDFKNG----------- 662 (997)
T ss_pred chHHHHHHHHHHHH-HhhcCCEEEEEcCchHHHHHHHHHHhcC-cchhhhcCCCchHHHHhHHHHHhcc-----------
Confidence 45666666663333 3347899999999999999999999888 6888899999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
.+.+||+|++ ++||+|+++..+|||||+|...++|+||+||+ .++.|.|++|++
T Consensus 663 ------------~~~LLvaTsv----varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~ 718 (997)
T KOG0334|consen 663 ------------VVNLLVATSV----VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFIT 718 (997)
T ss_pred ------------CceEEEehhh----hhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeC
Confidence 8999999999 99999999999999999999999999999999 556689999875
No 53
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.82 E-value=2.3e-19 Score=148.43 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=85.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHH----HHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLI----LEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~----l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
..++++||||||++.++.+++.|++.+. ..+..+||++++.+|.+. ++.|+++
T Consensus 220 ~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~---------------------- 277 (358)
T TIGR01587 220 KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN---------------------- 277 (358)
T ss_pred hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC----------------------
Confidence 3468999999999999999999988752 259999999999999764 8899998
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+.++|||||+ +++|+|++ +++||+++.| +++|+||+||++|.+
T Consensus 278 -~~~ilvaT~~----~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g 320 (358)
T TIGR01587 278 -EKFVIVATQV----IEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYG 320 (358)
T ss_pred -CCeEEEECcc----hhceeccC-CCEEEEcCCC--HHHHHHHhccccCCC
Confidence 8999999999 99999995 8999999887 789999999997753
No 54
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.81 E-value=6e-20 Score=154.15 Aligned_cols=110 Identities=23% Similarity=0.340 Sum_probs=101.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
+..-.|+||||.|+..|+.|.++++.+|+ ..++.+||+..+++|++.++.|+++ .
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-----------------------d 558 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-----------------------D 558 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-----------------------C
Confidence 34458999999999999999999998853 5899999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEEee
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILLV 158 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~~ 158 (159)
.+.|||||+ ++||+|+..+.++||.-+|.+...|+|||||+||.. |.+||+|..|
T Consensus 559 vkflictdv----aargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 559 VKFLICTDV----AARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred eEEEEEehh----hhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 999999999 999999999999999999999999999999997754 9999988654
No 55
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.81 E-value=3.2e-19 Score=158.89 Aligned_cols=125 Identities=15% Similarity=0.123 Sum_probs=108.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|++.++.+++.|.+.| +.+..+|++ +.+|...+..|+.+
T Consensus 383 i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~g-i~~~~Lna~--q~~rEa~ii~~ag~------- 452 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERG-IPHNVLNAK--NHEREAEIIAQAGR------- 452 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEEeeCC--hHHHHHHHHHhcCC-------
Confidence 44555666666666665445678999999999999999999999998 799999998 88999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC-------CCeEEEccCCCChhHHHhhhhcccCCC--CeEEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------ARVLINYELPTKKETYIRRMTTCLAAG--TSFSD 153 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~-------v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~ 153 (159)
+..|+||||+ ++||+|++. .-+||+++.|.+...|.||+||+||.+ |.+..
T Consensus 453 ----------------~g~VtIATnm----AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 453 ----------------KGAVTIATNM----AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ----------------CceEEEEecc----ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 8999999999 999999998 559999999999999999999997765 88777
Q ss_pred EEEe
Q 031433 154 IILL 157 (159)
Q Consensus 154 ~v~~ 157 (159)
|+++
T Consensus 513 ~ls~ 516 (745)
T TIGR00963 513 FLSL 516 (745)
T ss_pred EEec
Confidence 7764
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.80 E-value=5.1e-19 Score=157.49 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=90.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCCHHHHHHHHHHH-hcccccccccccccCCCCCCCCCCCCcee
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEF-RHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~~~~R~~~l~~F-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+.++||||+++++++.+++.|++.. ++.+..|||+|+++ .+.+++| ++| +.+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g-----------------------k~k 448 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK-----------------------NPS 448 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC-----------------------cee
Confidence 35789999999999999999999872 37999999999975 5677887 566 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEcc---CCC---------ChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYE---LPT---------KKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d---~P~---------~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
||||||+ ++||||+++|++||++| .|. +.++|+||+||+||. .|.++.|.+
T Consensus 449 ILVATdI----AERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt 512 (675)
T PHA02653 449 IIISTPY----LESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYD 512 (675)
T ss_pred EEeccCh----hhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEEC
Confidence 9999999 99999999999999999 676 788999999999775 588887764
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.80 E-value=7.5e-19 Score=160.89 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.+.+++||||++++++.+++.|++. +.+.+..+||+|++++|.+++++|++| +.+|
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-----------------------k~~I 715 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-----------------------EFQV 715 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-----------------------CCCE
Confidence 3689999999999999999999985 336999999999999999999999999 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCC--CeEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
||||++ +++|+|+|++++||+++.|. ....|.||+||+||.+ |.|+.+
T Consensus 716 LVaT~i----ie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 716 LVCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred EEECCh----hhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 999999 99999999999999999975 6789999999997766 445444
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.79 E-value=6.4e-19 Score=164.21 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=90.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
+.+++||||+++.++.+++.|++. +...+..+||+|++++|.+++++|++| +.+||
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-----------------------k~~VL 865 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-----------------------RFNVL 865 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-----------------------CCCEE
Confidence 578999999999999999999987 236899999999999999999999999 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCCCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
|||++ ++||+|+|++++||..+.. .+...|+||+||+||.+..+..++.
T Consensus 866 VaTdI----ierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll 915 (1147)
T PRK10689 866 VCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 (1147)
T ss_pred EECch----hhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEE
Confidence 99999 9999999999999943322 2345699999999888766665543
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.78 E-value=1.2e-18 Score=158.01 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=94.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++||||+++++++.+++.|++. ..+.+..+||+|++++|.++++.|++| +.+|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-----------------------~rkV 265 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-----------------------RRKV 265 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-----------------------CeEE
Confidence 478999999999999999999873 237999999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCCh------------------hHHHhhhhcccC-CCCeEEEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKK------------------ETYIRRMTTCLA-AGTSFSDIIL 156 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~------------------~~yi~R~GR~~~-~~g~~i~~v~ 156 (159)
+||||+ +++|||+++|++|||+++|..+ .+|.||+||+|| ..|.|+.+.+
T Consensus 266 lVATnI----AErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t 334 (819)
T TIGR01970 266 VLATNI----AETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWS 334 (819)
T ss_pred EEecch----HhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCC
Confidence 999999 9999999999999999998632 358999999988 5689888764
No 60
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.6e-18 Score=155.48 Aligned_cols=125 Identities=12% Similarity=0.140 Sum_probs=106.1
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|+..++.+++.|.+.+ +.+..||+++.++++..+.++++.|
T Consensus 418 i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g-i~~~~Lna~~~~~Ea~ii~~ag~~g------- 489 (796)
T PRK12906 418 LYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG-IPHAVLNAKNHAKEAEIIMNAGQRG------- 489 (796)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC-CCeeEecCCcHHHHHHHHHhcCCCc-------
Confidence 34455566666666554435578999999999999999999999998 7999999999988888888877776
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---CCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.|+|||++ ++||+|++ +|. |||+++.|.+...|.||.||+||.| |.++
T Consensus 490 ------------------~VtIATnm----AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 490 ------------------AVTIATNM----AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ------------------eEEEEecc----ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 49999999 99999994 899 9999999999999999999997765 7777
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
.|+++
T Consensus 548 ~~~sl 552 (796)
T PRK12906 548 FYLSL 552 (796)
T ss_pred EEEec
Confidence 77764
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.78 E-value=2.4e-18 Score=155.30 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=87.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHH-----HHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT-----LILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~-----~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.+.++||||||++.++.+++.|++.+ + ..+||+|++.+|. +++++|++... .++ ++ ...+
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g-~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~---------~g~--~~-~~~~ 335 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEK-F--ELLTGTLRGAERDDLVKKEIFNRFLPQML---------SGS--RA-RPQQ 335 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcC-C--eEeeCCCCHHHHhhHHHHHHHHHHhcccc---------ccc--cc-cccc
Confidence 46899999999999999999999886 4 8999999999999 88999987200 000 00 0112
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC---CCeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA---GTSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~---~g~~i~~v~ 156 (159)
...||||||+ ++||+|++. ++||++..| .++|+||+||++|. ++..+.++.
T Consensus 336 g~~ILVATdV----aerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~ 389 (844)
T TIGR02621 336 GTVYLVCTSA----GEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVH 389 (844)
T ss_pred cceEEeccch----hhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEe
Confidence 3689999999 999999986 899998877 68999999999664 345566654
No 62
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.78 E-value=2.8e-18 Score=153.46 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=89.8
Q ss_pred CCCCcEEEEeCch--------HHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 23 RPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 23 ~~~~k~iIF~ns~--------~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
..+.+++|||+.. ..++.+++.|.+. +.+.+..+||+|++++|.+++++|++|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g------------------ 530 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG------------------ 530 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC------------------
Confidence 3578999999954 4567788888775 226899999999999999999999998
Q ss_pred CCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCC--CeEEEE
Q 031433 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
+.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+||.+ |.|+.+
T Consensus 531 -----~~~ILVaT~v----ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 531 -----EIDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred -----CCCEEEECcc----eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEE
Confidence 8999999999 99999999999999999997 4678888999998866 455444
No 63
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=5.2e-19 Score=147.62 Aligned_cols=119 Identities=21% Similarity=0.330 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
++...||. +......+++.+|||.|+..++++...|+..| +.+..++|.|+++.|...+..|+.+
T Consensus 246 ~K~aaLl~-il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g-~~~s~iysslD~~aRk~~~~~F~~~------------- 310 (529)
T KOG0337|consen 246 EKEAALLS-ILGGRIKDKQTIVFVATKHHVEYVRGLLRDFG-GEGSDIYSSLDQEARKINGRDFRGR------------- 310 (529)
T ss_pred HHHHHHHH-HHhccccccceeEEecccchHHHHHHHHHhcC-CCccccccccChHhhhhccccccCC-------------
Confidence 34344444 44435557899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v~ 156 (159)
+..+||+||+ ++||+|+|..+.|||||+|.+..-|+||+||+ .++.|.++++|+
T Consensus 311 ----------k~~~lvvTdv----aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 311 ----------KTSILVVTDV----AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred ----------ccceEEEehh----hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEe
Confidence 8999999999 99999999999999999999999999999999 467799999986
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.77 E-value=2.2e-18 Score=156.35 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=93.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++||||+++++++.+++.|++. ..+.+..+||+|++++|.++++.|++| +.+|
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-----------------------~rkV 268 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-----------------------RRKV 268 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-----------------------CeEE
Confidence 578999999999999999999872 237899999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCCh------------------hHHHhhhhcccC-CCCeEEEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKK------------------ETYIRRMTTCLA-AGTSFSDIIL 156 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~------------------~~yi~R~GR~~~-~~g~~i~~v~ 156 (159)
+||||+ +++|||+++|++|||+++|... .+|.||+||+|| ..|.|+.+.+
T Consensus 269 lvATnI----AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t 337 (812)
T PRK11664 269 VLATNI----AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYS 337 (812)
T ss_pred EEecch----HHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecC
Confidence 999999 9999999999999998887643 579999999977 4688887653
No 65
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.77 E-value=4.8e-18 Score=150.77 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=90.1
Q ss_pred CCCCcEEEEeCch--------HHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 23 RPGLPMIVCCSSR--------DELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 23 ~~~~k~iIF~ns~--------~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
..+.+++|||+.. ..++.+++.|.+. +.+.+..+||+|++++|.+++++|++|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g------------------ 507 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG------------------ 507 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC------------------
Confidence 3568999999875 4567788888764 336899999999999999999999998
Q ss_pred CCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCC--CeEEEE
Q 031433 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
+.+|||||++ +++|+|+|++++||+|+.|. ....|.||+||+||.+ |.|+.+
T Consensus 508 -----~~~ILVaT~v----ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 508 -----EVDILVATTV----IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred -----CCCEEEECce----eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 8999999999 99999999999999999997 5778888999998765 555543
No 66
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=148.15 Aligned_cols=123 Identities=18% Similarity=0.231 Sum_probs=103.1
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC--CCccEEEee--------cCCCHHHHHHHHHHHhc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLH--------SDLAETERTLILEEFRH 74 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~--------~~~~~~~R~~~l~~F~~ 74 (159)
.++.+++.+.+...+. ..+..++||||+++..|++|.++|... .+++...+- .+|++.+.++++++|+.
T Consensus 394 npkle~l~~~l~e~f~-~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFE-QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred ChhHHHHHHHHHHHhh-cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 4567888888887777 888999999999999999999999842 113333333 37999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
| ++++||||++ +++|||+++|++||.||.-.++...+||+||+..++|.++.+
T Consensus 473 G-----------------------~~NvLVATSV----~EEGLDI~ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll 525 (746)
T KOG0354|consen 473 G-----------------------EINVLVATSV----AEEGLDIGECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLL 525 (746)
T ss_pred C-----------------------CccEEEEecc----hhccCCcccccEEEEecCCccHHHHHHHhccccccCCeEEEE
Confidence 9 9999999999 999999999999999999999999999999943344655544
Q ss_pred E
Q 031433 155 I 155 (159)
Q Consensus 155 v 155 (159)
.
T Consensus 526 ~ 526 (746)
T KOG0354|consen 526 T 526 (746)
T ss_pred E
Confidence 3
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.75 E-value=1.8e-17 Score=143.58 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|||++.++++.|++.|++.+ .++..+||+|++++|.++++.|+.+ +..+|
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g-~~v~~i~G~~~~~eR~~i~~~~~~~-----------------------~~~vL 398 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVY-DKVYYVSGEVDTEDRNEMKKIAEGG-----------------------KGIII 398 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcC-CCEEEEeCCCCHHHHHHHHHHHhCC-----------------------CCeEE
Confidence 45788999999999999999999988 6999999999999999999999988 78899
Q ss_pred EEe-cCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 104 VVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~T-d~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
||| ++ +++|+|+|++++||++++|.+...|+||+||++|..
T Consensus 399 vaT~~~----l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 399 VASYGV----FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred EEEcce----eccccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 998 89 999999999999999999999999999999997653
No 68
>PRK02362 ski2-like helicase; Provisional
Probab=99.75 E-value=1e-17 Score=151.00 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=91.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCC-----------------------------------ccEEEeecCCCHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISFSSLHSDLAETERTLI 68 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~-----------------------------------i~~~~l~~~~~~~~R~~~ 68 (159)
.+.++||||+|++.++.+++.|..... ..+..+|++|++++|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 468999999999999999888875310 147889999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc-----CCCChhHHHh
Q 031433 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE-----LPTKKETYIR 139 (159)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d-----~P~~~~~yi~ 139 (159)
++.|++| .++|||||+. +++|+|+|.+++||+ || .|.+..+|.|
T Consensus 322 e~~Fr~G-----------------------~i~VLvaT~t----la~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 322 EDAFRDR-----------------------LIKVISSTPT----LAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred HHHHHcC-----------------------CCeEEEechh----hhhhcCCCceEEEEecceeecCCCCceeCCHHHHHH
Confidence 9999999 8999999999 999999999999998 87 6899999999
Q ss_pred hhhcccCCC----CeEEEEE
Q 031433 140 RMTTCLAAG----TSFSDII 155 (159)
Q Consensus 140 R~GR~~~~~----g~~i~~v 155 (159)
|+||+||.+ |.++.+.
T Consensus 375 m~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HhhcCCCCCCCCCceEEEEe
Confidence 999998854 6666553
No 69
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.1e-17 Score=151.73 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=107.1
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+.+.+......+.++||||+|++.++.|++.|...+ +.+.+||+ .+.+|.+.+.+|..+
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g-I~h~vLna--kq~~REa~Iia~AG~------- 645 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR-IAHNVLNA--KQHDREAEIVAEAGQ------- 645 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC-CCceeecC--CHHHhHHHHHHhcCC-------
Confidence 45566667667776654434568999999999999999999999998 79999997 688999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC---CCC-----eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI---SAR-----VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~---~v~-----~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
+..|+||||+ ++||+||+ .|. +||+++.|.+...|.||+||+||.| |.++
T Consensus 646 ----------------~g~VtIATNM----AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 646 ----------------KGAVTIATNM----AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred ----------------CCeEEEeccC----cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 8999999999 99999999 554 3499999999999999999997665 8888
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
.|+++
T Consensus 706 ffvSl 710 (1025)
T PRK12900 706 FYVSL 710 (1025)
T ss_pred EEech
Confidence 87764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.73 E-value=2.5e-17 Score=137.36 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=75.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+++++||||||++.++.+++.|++.+ .+.+..+||.+++++|.+. + +..
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~-----------------------~~~ 320 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------M-----------------------QFD 320 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------c-----------------------cCC
Confidence 356899999999999999999999864 2478899999999988643 3 578
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~ 145 (159)
+|||||+ ++||+|++.+ +|| ++ |.+.++|+||+||+|
T Consensus 321 iLVaTdv----~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 321 ILLGTST----VDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEEecH----HhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999999 9999999987 666 56 999999999999985
No 71
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.72 E-value=2.2e-17 Score=150.74 Aligned_cols=116 Identities=27% Similarity=0.374 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+..++..+.. ..+....||||.++.+|+.++..|++.+ +.+..+|++|++.+|..+.++|..+
T Consensus 470 ~~~~~~~~~~~~-~~~~~s~IIYC~sr~~ce~vs~~L~~~~-~~a~~YHAGl~~~~R~~Vq~~w~~~------------- 534 (941)
T KOG0351|consen 470 DALLDILEESKL-RHPDQSGIIYCLSRKECEQVSAVLRSLG-KSAAFYHAGLPPKERETVQKAWMSD------------- 534 (941)
T ss_pred cchHHHHHHhhh-cCCCCCeEEEeCCcchHHHHHHHHHHhc-hhhHhhhcCCCHHHHHHHHHHHhcC-------------
Confidence 344445554433 6778999999999999999999999998 7999999999999999999999999
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSD 153 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~ 153 (159)
+++|++||=+ +++|||.++|+.||||.+|.+.+.|.|-+||+||.+-.+.+
T Consensus 535 ----------~~~VivATVA----FGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C 585 (941)
T KOG0351|consen 535 ----------KIRVIVATVA----FGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSC 585 (941)
T ss_pred ----------CCeEEEEEee----ccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCccee
Confidence 8999999999 99999999999999999999999999999999888754444
No 72
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.72 E-value=3.9e-17 Score=106.67 Aligned_cols=81 Identities=31% Similarity=0.500 Sum_probs=75.3
Q ss_pred HHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCC
Q 031433 40 AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESA 119 (159)
Q Consensus 40 ~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~ 119 (159)
.+++.|+..+ +.+..+||++++++|..+++.|+.+ ...+||+|++ +++|+|+
T Consensus 2 ~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~vli~t~~----~~~Gi~~ 53 (82)
T smart00490 2 ELAELLKELG-IKVARLHGGLSQEEREEILEKFNNG-----------------------KIKVLVATDV----AERGLDL 53 (82)
T ss_pred HHHHHHHHCC-CeEEEEECCCCHHHHHHHHHHHHcC-----------------------CCeEEEECCh----hhCCcCh
Confidence 5677888877 6999999999999999999999998 7899999999 9999999
Q ss_pred CCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 120 ISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 120 ~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+++++||.+++|++...|.|++||++|.+
T Consensus 54 ~~~~~vi~~~~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 54 PGVDLVIIYDLPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred hcCCEEEEeCCCCCHHHHHHhhcccccCC
Confidence 99999999999999999999999997753
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.9e-16 Score=141.61 Aligned_cols=93 Identities=20% Similarity=0.216 Sum_probs=83.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++.+.++.+++.|. +..+||++++.+|.+++++|+.+ +.+++|
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~----------------------~~i~vL 546 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHN----------------------PKVNTI 546 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhC----------------------CCccEE
Confidence 67899999999999999998872 35699999999999999999975 278999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~ 148 (159)
|+|++ +.+|+|+|++++||+++.| .+...|+||+||++|.+
T Consensus 547 v~SkV----gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 547 FLSKV----GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred EEecc----cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC
Confidence 99999 9999999999999999998 49999999999996653
No 74
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.69 E-value=9.9e-17 Score=144.32 Aligned_cols=108 Identities=15% Similarity=0.189 Sum_probs=96.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
..+.+..+.+ ..+.+|||+||+.++|.++..|++.+...+...||.++.++|..+-++|++|
T Consensus 242 ~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G--------------- 303 (814)
T COG1201 242 LYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG--------------- 303 (814)
T ss_pred HHHHHHHHHh---hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC---------------
Confidence 4444444544 3468999999999999999999998656899999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+++++|||.- ++-|||+.+++.||+|..|.++...+||+||+|.+-
T Consensus 304 --------~lravV~TSS----LELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~ 349 (814)
T COG1201 304 --------ELKAVVATSS----LELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRL 349 (814)
T ss_pred --------CceEEEEccc----hhhccccCCceEEEEeCCcHHHHHHhHhcccccccc
Confidence 8999999999 999999999999999999999999999999995543
No 75
>PRK00254 ski2-like helicase; Provisional
Probab=99.68 E-value=2.2e-16 Score=141.98 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=88.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---------------------------------CCccEEEeecCCCHHHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---------------------------------ADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---------------------------------~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
.++++||||||++.++.++..|... . ..+..+|++|++++|..+.+
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~gv~~hHagl~~~eR~~ve~ 315 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR-GGVAFHHAGLGRTERVLIED 315 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh-hCEEEeCCCCCHHHHHHHHH
Confidence 3689999999999998887766421 1 14889999999999999999
Q ss_pred HHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE-------ccCCC-ChhHHHhhhh
Q 031433 71 EFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-------YELPT-KKETYIRRMT 142 (159)
Q Consensus 71 ~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~-------~d~P~-~~~~yi~R~G 142 (159)
.|++| .++|||||+. +++|+|+|.+++||. |+.|. +..+|.||+|
T Consensus 316 ~F~~G-----------------------~i~VLvaT~t----La~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~G 368 (720)
T PRK00254 316 AFREG-----------------------LIKVITATPT----LSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMG 368 (720)
T ss_pred HHHCC-----------------------CCeEEEeCcH----HhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhh
Confidence 99999 8999999999 999999999999994 66665 4679999999
Q ss_pred cccCC----CCeEEEEE
Q 031433 143 TCLAA----GTSFSDII 155 (159)
Q Consensus 143 R~~~~----~g~~i~~v 155 (159)
|+||. .|.++.+.
T Consensus 369 RAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 369 RAGRPKYDEVGEAIIVA 385 (720)
T ss_pred ccCCCCcCCCceEEEEe
Confidence 99885 37777654
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.68 E-value=2.8e-16 Score=146.76 Aligned_cols=105 Identities=13% Similarity=0.216 Sum_probs=89.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
....++||||++.+.++.+++.|++.+. ..+..+||+|++++|.++++. .+ ..
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g-----------------------~r 338 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS-----------------------GR 338 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC-----------------------Ce
Confidence 3457899999999999999999998752 347899999999999998875 34 68
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEEcc---------------CCC---ChhHHHhhhhcccCC-CCeEEEEEE
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLINYE---------------LPT---KKETYIRRMTTCLAA-GTSFSDIIL 156 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~~d---------------~P~---~~~~yi~R~GR~~~~-~g~~i~~v~ 156 (159)
+|+||||+ +++|||+++|++|||++ +|. |..+|.||+|||||. .|.|+.+.+
T Consensus 339 kIIVATNI----AEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyt 409 (1294)
T PRK11131 339 RIVLATNV----AETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYS 409 (1294)
T ss_pred eEEEeccH----HhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCC
Confidence 99999999 99999999999999996 453 457899999999775 588887653
No 77
>PRK09401 reverse gyrase; Reviewed
Probab=99.65 E-value=4.1e-16 Score=145.87 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=79.4
Q ss_pred CcEEEEeCchHH---HHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 26 LPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 26 ~k~iIF~ns~~~---~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.++||||++++. ++.+++.|+..| +++..+||+| .+.+++|++| +.+|
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~g-i~v~~~hg~l-----~~~l~~F~~G-----------------------~~~V 379 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLG-INAELAISGF-----ERKFEKFEEG-----------------------EVDV 379 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCC-CcEEEEeCcH-----HHHHHHHHCC-----------------------CCCE
Confidence 589999999877 999999999998 7999999999 2346999999 8999
Q ss_pred EEE----ecCCCCCCcCCCCCCC-CCeEEEccCCC------ChhHHHhhhhcc
Q 031433 103 IVV----TDACLPLLSSGESAIS-ARVLINYELPT------KKETYIRRMTTC 144 (159)
Q Consensus 103 LV~----Td~~~~~~~rGid~~~-v~~VI~~d~P~------~~~~yi~R~GR~ 144 (159)
||+ ||+ ++||||+|+ |++|||||+|. ..+.|.||+||+
T Consensus 380 LVatas~tdv----~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~ 428 (1176)
T PRK09401 380 LVGVASYYGV----LVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRL 428 (1176)
T ss_pred EEEecCCCCc----eeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHH
Confidence 999 699 999999999 89999999998 778999999998
No 78
>PRK01172 ski2-like helicase; Provisional
Probab=99.63 E-value=2.8e-15 Score=133.95 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC----C--------------------ccEEEeecCCCHHHHHHHHHHHhcccccc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA----D--------------------ISFSSLHSDLAETERTLILEEFRHTAMKW 79 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~----~--------------------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~ 79 (159)
.++++||||++++.++.+++.|.+.. . ..+..+||+|++++|..+.+.|++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g---- 310 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR---- 310 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC----
Confidence 46899999999999999999887531 0 1367899999999999999999998
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC---------CCChhHHHhhhhcccCCC
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL---------PTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~---------P~~~~~yi~R~GR~~~~~ 148 (159)
.++|||||+. +++|+|+|.. .||.+|. |-++.+|.||+||+||.+
T Consensus 311 -------------------~i~VLvaT~~----la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 311 -------------------YIKVIVATPT----LAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred -------------------CCeEEEecch----hhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCC
Confidence 8999999999 9999999985 5555554 457889999999998865
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.63 E-value=1.8e-15 Score=141.60 Aligned_cols=115 Identities=8% Similarity=0.132 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+..+.. .....+|||+++++.++.+++.|++.+ .+.+..+||+|++++|.++++ .+.
T Consensus 267 i~~~I~~l~~--~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~---~~~------------ 329 (1283)
T TIGR01967 267 ILDAVDELFA--EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ---PHS------------ 329 (1283)
T ss_pred HHHHHHHHHh--hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC---CCC------------
Confidence 3344444443 235789999999999999999999763 256899999999999998854 331
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------------------ChhHHHhhhhcccCC-CC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------------------KKETYIRRMTTCLAA-GT 149 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------------------~~~~yi~R~GR~~~~-~g 149 (159)
..+|+||||+ +++|||+++|++||++++|. |..+|.||+||+||. .|
T Consensus 330 ----------~rkIVLATNI----AEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G 395 (1283)
T TIGR01967 330 ----------GRRIVLATNV----AETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPG 395 (1283)
T ss_pred ----------CceEEEeccH----HHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCc
Confidence 4689999999 99999999999999999653 457999999999775 48
Q ss_pred eEEEEEE
Q 031433 150 SFSDIIL 156 (159)
Q Consensus 150 ~~i~~v~ 156 (159)
.|+.+.+
T Consensus 396 ~cyRLyt 402 (1283)
T TIGR01967 396 ICIRLYS 402 (1283)
T ss_pred eEEEecC
Confidence 8877653
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.59 E-value=1e-14 Score=133.13 Aligned_cols=99 Identities=14% Similarity=0.306 Sum_probs=82.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHH----HHHHHHH-hcccccccccccccCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETER----TLILEEF-RHTAMKWNQKVTEQSGDESETGK 95 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R----~~~l~~F-~~~~~~~~~~~~~~~~~~~~~~~ 95 (159)
..+++++|||||++.++.+++.|++.+ ...+..+||.++..+| .++++.| ++++
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~------------------- 618 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGK------------------- 618 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC-------------------
Confidence 357899999999999999999999763 2479999999999999 4577888 4441
Q ss_pred CCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 96 DEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 96 ~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
.+...|||+|++ +++|+|+ +++++|....| .+.|+||+||++|.+
T Consensus 619 -r~~~~ILVaTQV----iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 619 -RNQGRILVATQV----VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred -cCCCeEEEECcc----hhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 112589999999 9999999 68999999888 789999999996643
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.56 E-value=6.2e-15 Score=123.94 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=93.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 105 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~ 105 (159)
.--||||.|++.||.++=.|...| |.+..+|.++...+|..+.++|.++ +..|+++
T Consensus 256 GCGIVYCRTR~~cEq~AI~l~~~G-i~A~AYHAGLK~~ERTeVQe~WM~~-----------------------~~PvI~A 311 (641)
T KOG0352|consen 256 GCGIVYCRTRNECEQVAIMLEIAG-IPAMAYHAGLKKKERTEVQEKWMNN-----------------------EIPVIAA 311 (641)
T ss_pred cceEEEeccHHHHHHHHHHhhhcC-cchHHHhcccccchhHHHHHHHhcC-----------------------CCCEEEE
Confidence 457999999999999999999998 8999999999999999999999998 8999999
Q ss_pred ecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEE
Q 031433 106 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFS 152 (159)
Q Consensus 106 Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i 152 (159)
|.. +++|+|-|+|+.|||||+|.+...|.|..||+||.+....
T Consensus 312 T~S----FGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~Sy 354 (641)
T KOG0352|consen 312 TVS----FGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSY 354 (641)
T ss_pred Eec----cccccCCcceeEEEecCchhhhHHHHHhccccccCCCccc
Confidence 999 9999999999999999999999999999999988876544
No 82
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.55 E-value=8.5e-14 Score=128.60 Aligned_cols=106 Identities=13% Similarity=0.180 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
|..||..+. ..+.|+||||+.....+.|.++|...+ +....++|+++.++|..++++|....
T Consensus 476 LdkLL~~Lk---~~g~KVLIFSQft~~LdiLed~L~~~g-~~y~rIdGsts~~eRq~~Id~Fn~~~-------------- 537 (1033)
T PLN03142 476 LDKLLPKLK---ERDSRVLIFSQMTRLLDILEDYLMYRG-YQYCRIDGNTGGEDRDASIDAFNKPG-------------- 537 (1033)
T ss_pred HHHHHHHHH---hcCCeEEeehhHHHHHHHHHHHHHHcC-CcEEEECCCCCHHHHHHHHHHhcccc--------------
Confidence 344444443 357899999999999999999999888 69999999999999999999998741
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
++..-+|++|.+ .+.|||++.+++||+||+||||..+.|++||+
T Consensus 538 ------s~~~VfLLSTrA----GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRa 581 (1033)
T PLN03142 538 ------SEKFVFLLSTRA----GGLGINLATADIVILYDSDWNPQVDLQAQDRA 581 (1033)
T ss_pred ------CCceEEEEeccc----cccCCchhhCCEEEEeCCCCChHHHHHHHHHh
Confidence 113567899999 99999999999999999999999999999999
No 83
>PRK14701 reverse gyrase; Provisional
Probab=99.54 E-value=1.5e-14 Score=138.45 Aligned_cols=84 Identities=8% Similarity=0.122 Sum_probs=76.2
Q ss_pred CCcEEEEeCchHH---HHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~---~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.+.||||++++. ++.+++.|.+.| +++..+||+ |.+++++|++| +.+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~G-i~a~~~h~~-----R~~~l~~F~~G-----------------------~~~ 380 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDG-FKIELVSAK-----NKKGFDLFEEG-----------------------EID 380 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCC-CeEEEecch-----HHHHHHHHHcC-----------------------CCC
Confidence 4789999999886 489999999998 799999995 88999999999 899
Q ss_pred EEEEe----cCCCCCCcCCCCCCC-CCeEEEccCCC---ChhHHHhhh
Q 031433 102 MIVVT----DACLPLLSSGESAIS-ARVLINYELPT---KKETYIRRM 141 (159)
Q Consensus 102 vLV~T----d~~~~~~~rGid~~~-v~~VI~~d~P~---~~~~yi~R~ 141 (159)
|||+| |+ ++||||+|+ |++|||||+|. +.+.|.|..
T Consensus 381 VLVaT~s~~gv----aaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 381 YLIGVATYYGT----LVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred EEEEecCCCCe----eEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 99999 58 999999999 99999999999 888777765
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.50 E-value=9.2e-14 Score=130.31 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCcEEEEeCch---HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~---~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||||+++ +.++++++.|++.| +.+..+||+|++ .++++|++| +.+
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~g-~~a~~lhg~~~~----~~l~~Fr~G-----------------------~~~ 377 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENHG-VKAVAYHATKPK----EDYEKFAEG-----------------------EID 377 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhCC-ceEEEEeCCCCH----HHHHHHHcC-----------------------CCC
Confidence 36899999999 99999999999998 799999999973 689999999 899
Q ss_pred EEEE----ecCCCCCCcCCCCCCC-CCeEEEccCCCC
Q 031433 102 MIVV----TDACLPLLSSGESAIS-ARVLINYELPTK 133 (159)
Q Consensus 102 vLV~----Td~~~~~~~rGid~~~-v~~VI~~d~P~~ 133 (159)
|||+ ||+ ++||||+|+ |++|||||+|..
T Consensus 378 vLVata~~tdv----~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 378 VLIGVASYYGT----LVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred EEEEeccccCc----ccccCCCCccccEEEEECCCCE
Confidence 9999 499 999999999 899999999974
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.49 E-value=9.1e-13 Score=112.88 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=89.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|||.++.+++.++..+...+ + +..++++.++++|..++++|+.+ .+++|
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~~-~-~~~it~~t~~~eR~~il~~fr~g-----------------------~~~~l 336 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAPG-I-VEAITGETPKEEREAILERFRTG-----------------------GIKVL 336 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCCC-c-eEEEECCCCHHHHHHHHHHHHcC-----------------------CCCEE
Confidence 46899999999999999999999887 4 89999999999999999999998 79999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~ 146 (159)
+++.+ +.+|+|+|+++++|......++..|+||+||..|
T Consensus 337 v~~~v----l~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 337 VTVKV----LDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEeee----ccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999 9999999999999999999999999999999955
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=2.7e-12 Score=116.54 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=106.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.++||||+|++.++.+++.|.+.| +.+..||+.+.+++|..+.++|+.|
T Consensus 422 v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~g-i~h~vLnak~~q~Ea~iia~Ag~~G------- 493 (896)
T PRK13104 422 VYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKEN-IKHQVLNAKFHEKEAQIIAEAGRPG------- 493 (896)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC-CCeEeecCCCChHHHHHHHhCCCCC-------
Confidence 56677777777777776556778999999999999999999999998 8999999999999999999999997
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--------------------------------------Ce
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 124 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--------------------------------------~~ 124 (159)
. |+||||+ ++||+|+.-- =+
T Consensus 494 ----------------~--VtIATNm----AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~ 551 (896)
T PRK13104 494 ----------------A--VTIATNM----AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLR 551 (896)
T ss_pred ----------------c--EEEeccC----ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCE
Confidence 3 9999999 9999999732 26
Q ss_pred EEEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 125 LINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 125 VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
||--+.+.|..-=-|=.||+||+| |.+--|++|
T Consensus 552 VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSl 586 (896)
T PRK13104 552 IIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 586 (896)
T ss_pred EEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 888888888888889899998775 666666654
No 87
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=5e-12 Score=114.46 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=104.0
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|++.++.+++.|.+.+ +.+..||+. +.+|...+.+|+.+
T Consensus 408 i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~g-i~~~vLnak--q~eREa~Iia~Ag~------- 477 (830)
T PRK12904 408 IYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAG-IPHNVLNAK--NHEREAEIIAQAGR------- 477 (830)
T ss_pred EEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CceEeccCc--hHHHHHHHHHhcCC-------
Confidence 45555666666666554324567999999999999999999999998 799999995 88999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--------------------------------------Ce
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--------------------------------------RV 124 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--------------------------------------~~ 124 (159)
+..|+||||+ ++||+|++-- =|
T Consensus 478 ----------------~g~VtIATNm----AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLh 537 (830)
T PRK12904 478 ----------------PGAVTIATNM----AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLH 537 (830)
T ss_pred ----------------CceEEEeccc----ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCE
Confidence 8999999999 9999999754 26
Q ss_pred EEEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 125 LINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 125 VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
||--..|.|..---|=.||+||+| |.+--|++|
T Consensus 538 VigTerhesrRid~QlrGRagRQGdpGss~f~lSl 572 (830)
T PRK12904 538 VIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL 572 (830)
T ss_pred EEecccCchHHHHHHhhcccccCCCCCceeEEEEc
Confidence 899999999999999999998775 666666654
No 88
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.39 E-value=2.6e-13 Score=108.03 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=47.1
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
+|+|++ ++||+|+..++.|+|||+|.++++|+||+||+|| .+|.+|+|+..
T Consensus 302 ~vat~l----fgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~ 354 (387)
T KOG0329|consen 302 LVATDL----FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 354 (387)
T ss_pred hHHhhh----hccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcc
Confidence 899999 9999999999999999999999999999999954 56899998763
No 89
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=109.46 Aligned_cols=105 Identities=21% Similarity=0.350 Sum_probs=93.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
...++.+ +.+..-.++.-||||-+++.++.++..|.+.| |.+..+|..|.+++|..+-+.|-.|
T Consensus 303 ~~edi~k-~i~~~f~gqsgiiyc~sq~d~ekva~alkn~g-i~a~~yha~lep~dks~~hq~w~a~-------------- 366 (695)
T KOG0353|consen 303 CIEDIAK-LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHG-IHAGAYHANLEPEDKSGAHQGWIAG-------------- 366 (695)
T ss_pred HHHHHHH-HhccccCCCcceEEEeccccHHHHHHHHHhcC-ccccccccccCcccccccccccccc--------------
Confidence 3334444 55546678999999999999999999999998 8999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhc
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 143 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR 143 (159)
+++|+|+|-+ +++|||-|+|+.|||-.+|.+++.|.|...|
T Consensus 367 ---------eiqvivatva----fgmgidkpdvrfvihhsl~ksienyyqasar 407 (695)
T KOG0353|consen 367 ---------EIQVIVATVA----FGMGIDKPDVRFVIHHSLPKSIENYYQASAR 407 (695)
T ss_pred ---------ceEEEEEEee----ecccCCCCCeeEEEecccchhHHHHHHHHHH
Confidence 8999999999 9999999999999999999999999994433
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.39 E-value=6.9e-12 Score=117.33 Aligned_cols=95 Identities=11% Similarity=0.167 Sum_probs=81.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-----CC---ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-----AD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-----~~---i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
+.|+||||.++++++.+++.|.+. +. -.+..+||+++ ++.+++++|++++
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-------------------- 755 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-------------------- 755 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--------------------
Confidence 479999999999999999988753 11 24567999875 5678999999872
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
..+|+|++|+ +++|+|+|.+++||+++.|.|...|+|++||+.|.
T Consensus 756 --~p~IlVsvdm----L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 756 --LPNIVVTVDL----LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred --CCeEEEEecc----cccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 3479999999 99999999999999999999999999999999663
No 91
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.38 E-value=3.2e-12 Score=110.02 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=102.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
..+|+..+......+.+++|-+=|++.++.|.++|.+.| +++.++|++...-+|.+++++.|.|
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~g-ikv~YlHSdidTlER~eIirdLR~G--------------- 495 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELG-IKVRYLHSDIDTLERVEIIRDLRLG--------------- 495 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcC-ceEEeeeccchHHHHHHHHHHHhcC---------------
Confidence 344555554434456999999999999999999999998 8999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc-----CCCChhHHHhhhhcccCC-CCeEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE-----LPTKKETYIRRMTTCLAA-GTSFSDI 154 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d-----~P~~~~~yi~R~GR~~~~-~g~~i~~ 154 (159)
...|||--++ +.+|+|+|.|++|..+| +.++-.+++|=+||++|+ .|.+|.+
T Consensus 496 --------~~DvLVGINL----LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlY 553 (663)
T COG0556 496 --------EFDVLVGINL----LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILY 553 (663)
T ss_pred --------CccEEEeehh----hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEE
Confidence 8999999999 99999999999999888 568899999999999776 5888875
No 92
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=6.2e-12 Score=114.14 Aligned_cols=125 Identities=14% Similarity=0.163 Sum_probs=107.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......+.++||||+|++.++.+++.|...+ +.+..||+++.+.++..+.+.|+.|
T Consensus 427 iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g-i~~~vLnak~~~~Ea~ii~~Ag~~G------- 498 (908)
T PRK13107 427 VYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEK-IPHEVLNAKFHEREAEIVAQAGRTG------- 498 (908)
T ss_pred EEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC-CCeEeccCcccHHHHHHHHhCCCCC-------
Confidence 56677777777887776656779999999999999999999999998 7999999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC-------------------------------------CeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVL 125 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v-------------------------------------~~V 125 (159)
. |+|||++ ++||+|+.-- =+|
T Consensus 499 ----------------~--VtIATnm----AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~V 556 (908)
T PRK13107 499 ----------------A--VTIATNM----AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHI 556 (908)
T ss_pred ----------------c--EEEecCC----cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEE
Confidence 4 9999999 9999999732 278
Q ss_pred EEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 126 INYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
|--+.|.|..-=-|=.||+||+| |.+.-|++|
T Consensus 557 IgTerheSrRID~QLrGRaGRQGDPGss~f~lSl 590 (908)
T PRK13107 557 LGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSM 590 (908)
T ss_pred EecccCchHHHHhhhhcccccCCCCCceeEEEEe
Confidence 88889998888889999998775 666666654
No 93
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.36 E-value=2.6e-12 Score=111.44 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=88.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..|+|||+||++.|..|+++|..+| +++..+|++|+..+|+.+-.+|.++ .+.++|
T Consensus 440 rGQtIVFT~SRrr~h~lA~~L~~kG-~~a~pYHaGL~y~eRk~vE~~F~~q-----------------------~l~~VV 495 (830)
T COG1202 440 RGQTIVFTYSRRRCHELADALTGKG-LKAAPYHAGLPYKERKSVERAFAAQ-----------------------ELAAVV 495 (830)
T ss_pred CCceEEEecchhhHHHHHHHhhcCC-cccccccCCCcHHHHHHHHHHHhcC-----------------------CcceEe
Confidence 4899999999999999999999998 8999999999999999999999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEE---EccCCC-ChhHHHhhhhcccCC----CCeEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLI---NYELPT-KKETYIRRMTTCLAA----GTSFSDII 155 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI---~~d~P~-~~~~yi~R~GR~~~~----~g~~i~~v 155 (159)
+|-+ ++-|+|||.-.+|+ -...-| ++.+|.|..||+||- .|.++-++
T Consensus 496 TTAA----L~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 496 TTAA----LAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred ehhh----hhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 9999 99999999765442 122333 789999999999775 46666554
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=5.2e-12 Score=109.88 Aligned_cols=88 Identities=11% Similarity=0.172 Sum_probs=72.0
Q ss_pred HHHHHHHHhcC-CCccEEEeecCCCHHHH--HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCc
Q 031433 38 LDAVCSAVSNL-ADISFSSLHSDLAETER--TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 114 (159)
Q Consensus 38 ~~~l~~~L~~~-~~i~~~~l~~~~~~~~R--~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~ 114 (159)
++.+.+.|.+. +...+..+|++++...+ .+++++|++| +.+|||+|++ ++
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-----------------------~~~ILVgT~~----i~ 323 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-----------------------KADILIGTQM----IA 323 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-----------------------CCCEEEeCcc----cc
Confidence 57888888876 33689999999987666 8899999998 8999999999 99
Q ss_pred CCCCCCCCCeE--EEccCCC----------ChhHHHhhhhcccCC--CCeEE
Q 031433 115 SGESAISARVL--INYELPT----------KKETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 115 rGid~~~v~~V--I~~d~P~----------~~~~yi~R~GR~~~~--~g~~i 152 (159)
+|+|+++|++| +|+|..- ....|+|++||+||. +|.++
T Consensus 324 kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 324 KGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred cCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEE
Confidence 99999999987 5777532 245789999999774 45554
No 95
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.30 E-value=1.3e-11 Score=110.64 Aligned_cols=89 Identities=10% Similarity=0.159 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcC-CCccEEEeecCCC--HHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCC
Q 031433 37 ELDAVCSAVSNL-ADISFSSLHSDLA--ETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLL 113 (159)
Q Consensus 37 ~~~~l~~~L~~~-~~i~~~~l~~~~~--~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~ 113 (159)
.++.+.+.|++. ++..+..+|+++. ++++.+++++|++| +.+|||+|++ +
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-----------------------~~~ILVgT~~----i 490 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-----------------------EADILIGTQM----L 490 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-----------------------CCCEEEEChh----h
Confidence 467888888875 3368999999986 56799999999998 8999999999 9
Q ss_pred cCCCCCCCCCeE--EEccCCCCh----------hHHHhhhhcccCC--CCeEE
Q 031433 114 SSGESAISARVL--INYELPTKK----------ETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 114 ~rGid~~~v~~V--I~~d~P~~~----------~~yi~R~GR~~~~--~g~~i 152 (159)
++|+|+|+|++| ++.|.+-+. ..|+|++||+||. +|.++
T Consensus 491 akG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~vi 543 (679)
T PRK05580 491 AKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVL 543 (679)
T ss_pred ccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEE
Confidence 999999999998 566666443 5689999999774 45544
No 96
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.26 E-value=6.6e-11 Score=97.49 Aligned_cols=100 Identities=19% Similarity=0.323 Sum_probs=84.9
Q ss_pred ccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 20 AGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 20 ~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
+....+.+++||+++....+.++..|+. .+...+..+|+. ...|.+..++||+|
T Consensus 300 kq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G----------------------- 354 (441)
T COG4098 300 KQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDG----------------------- 354 (441)
T ss_pred HHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcC-----------------------
Confidence 3356689999999999999999999954 455677899985 46889999999999
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCe-EEEccCC-CChhHHHhhhhcccCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARV-LINYELP-TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~-VI~~d~P-~~~~~yi~R~GR~~~~~ 148 (159)
+.++||+|.+ ++||+.+|+|++ |+.-+-+ .+.+.++|-+||+||.-
T Consensus 355 ~~~lLiTTTI----LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 355 KITLLITTTI----LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred ceEEEEEeeh----hhcccccccceEEEecCCcccccHHHHHHHhhhccCCC
Confidence 9999999999 999999999998 5555444 57889999999998763
No 97
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.18 E-value=9.7e-11 Score=107.22 Aligned_cols=106 Identities=20% Similarity=0.252 Sum_probs=92.6
Q ss_pred CCCcEEEEeCchHHHHHHH----HHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVC----SAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~----~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+-++|+|+.+++.++.+. +.+...+ ...+...+++|..++|.++..+|+.|
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g--------------------- 363 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG--------------------- 363 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC---------------------
Confidence 4689999999999999996 3333333 12688888999999999999999999
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCCCCeEEEEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
++.++++|.+ +.-|+|+.+++.||++..|. +..++.||.||+||++..+..+++
T Consensus 364 --~~~~~~st~A----lelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 364 --ELLGVIATNA----LELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred --CccEEecchh----hhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 8999999999 99999999999999999999 899999999999999866665554
No 98
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.10 E-value=7.2e-10 Score=97.90 Aligned_cols=121 Identities=12% Similarity=0.193 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchH--------HHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRD--------ELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKW 79 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~--------~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~ 79 (159)
+.+-++++.+.++-..+.|+.+-|+-.+ .++.+++.|+.. +..++..+||.|..+++.++|++|+++
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~---- 532 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEG---- 532 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcC----
Confidence 4445555555554456899999998553 566777888754 345799999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCCCeEEEEEE
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
+++|||||.+ .+-|+|+|+++++|-+|.= .-...+-|=-||+||.+-.+.+++.
T Consensus 533 -------------------e~~ILVaTTV----IEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll 587 (677)
T COG1200 533 -------------------EIDILVATTV----IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLL 587 (677)
T ss_pred -------------------CCcEEEEeeE----EEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEE
Confidence 8999999999 9999999999998887754 3566777878899887777766654
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.98 E-value=6.7e-09 Score=96.25 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=96.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
...+.|+..-+|..++.+.+++.|++. +...+.+.||.|+.++-..++.+|.+| +.
T Consensus 800 l~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-----------------------~~ 856 (1139)
T COG1197 800 LLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-----------------------EY 856 (1139)
T ss_pred HhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-----------------------CC
Confidence 334789999999999999999999987 446899999999999999999999999 89
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
+|||||.+ .+-|||+|+++.+|--+.- --.+.+-|=-||+||..-.++.++++
T Consensus 857 dVLv~TTI----IEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 857 DVLVCTTI----IETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred CEEEEeee----eecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEee
Confidence 99999999 9999999999998765543 35778889999999999999888764
No 100
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.97 E-value=2.9e-09 Score=96.41 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=84.0
Q ss_pred HccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 19 VAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 19 ~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
......+++++|-|||++.|.++++.|+..+. ++..+||.+....|.+.+++.++-- ...
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~-------------------~~~ 493 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLF-------------------KQN 493 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHH-------------------hcc
Confidence 33356689999999999999999999999985 7999999999999999988765310 001
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
...|+|+|.+ .+-|+|+. .+++|- =+..+++.+||+|||.|.+
T Consensus 494 ~~~IvVaTQV----IEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 494 EGFIVVATQV----IEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred CCeEEEEeeE----EEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcc
Confidence 6899999999 99999976 566553 3556899999999996654
No 101
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.95 E-value=2e-09 Score=97.66 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC------------------CC------------------ccEEEeecCCCHHHHH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL------------------AD------------------ISFSSLHSDLAETERT 66 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~------------------~~------------------i~~~~l~~~~~~~~R~ 66 (159)
..+.+++|||+|++.+...++.|++. .. .-+...|++|+.++|.
T Consensus 251 ~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 251 AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 35789999999999999999999941 00 1245678999999999
Q ss_pred HHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE----Ecc-----CCCChhHH
Q 031433 67 LILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE-----LPTKKETY 137 (159)
Q Consensus 67 ~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI----~~d-----~P~~~~~y 137 (159)
.+-+.|+.| .++||+||+. ++.|++.|.=..|| -|| .+-++.+|
T Consensus 331 ~vE~~Fr~g-----------------------~ikVlv~TpT----LA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv 383 (766)
T COG1204 331 LVEDAFRKG-----------------------KIKVLVSTPT----LAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDV 383 (766)
T ss_pred HHHHHHhcC-----------------------CceEEEechH----HhhhcCCcceEEEEeeeEEEcCCCCeEECchhhH
Confidence 999999999 8999999999 99999999766665 566 56678999
Q ss_pred HhhhhcccCCC
Q 031433 138 IRRMTTCLAAG 148 (159)
Q Consensus 138 i~R~GR~~~~~ 148 (159)
+|.+||+||-+
T Consensus 384 ~QM~GRAGRPg 394 (766)
T COG1204 384 LQMAGRAGRPG 394 (766)
T ss_pred hhccCcCCCCC
Confidence 99999997753
No 102
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.93 E-value=3.3e-09 Score=92.50 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=88.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----C-C--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----A-D--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~-~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+-++|-||.+++.|+.+-...++. + + -.+..+.|+...++|.++-.+.-.|
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G--------------------- 582 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG--------------------- 582 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC---------------------
Confidence 3689999999999999887766653 1 1 1345667899999999999998887
Q ss_pred CCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDII 155 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~v 155 (159)
++.-+|+|++ ++-|||+...+.|++.++|.+...+.|..||+||+......++
T Consensus 583 --~L~giIaTNA----LELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavy 635 (1034)
T KOG4150|consen 583 --KLCGIIATNA----LELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVY 635 (1034)
T ss_pred --eeeEEEecch----hhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEE
Confidence 8999999999 9999999999999999999999999999999988775554433
No 103
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.81 E-value=4.2e-08 Score=90.90 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
++++|.-||++|.. .+.+||||+.-.+..+-|...|+.+| ...+-|.|....++|+..+++|...+
T Consensus 1261 KLQtLAiLLqQLk~---eghRvLIfTQMtkmLDVLeqFLnyHg-ylY~RLDg~t~vEqRQaLmerFNaD~---------- 1326 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKS---EGHRVLIFTQMTKMLDVLEQFLNYHG-YLYVRLDGNTSVEQRQALMERFNADR---------- 1326 (1958)
T ss_pred hHHHHHHHHHHHHh---cCceEEehhHHHHHHHHHHHHHhhcc-eEEEEecCCccHHHHHHHHHHhcCCC----------
Confidence 67788888887754 57999999999999999999999998 59999999999999999999999973
Q ss_pred CCCCCCCCCCCCce-eEEEEecCCCCCCcCCCCCCCCCeEEEccCCCCh------hHHHhhhhcc
Q 031433 87 SGDESETGKDEHKS-HMIVVTDACLPLLSSGESAISARVLINYELPTKK------ETYIRRMTTC 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~-~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~------~~yi~R~GR~ 144 (159)
++ ..+++|-- .+-||++.+++.||.||--||+ .+..||||+|
T Consensus 1327 ------------RIfcfILSTrS----ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1327 ------------RIFCFILSTRS----GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred ------------ceEEEEEeccC----CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc
Confidence 33 45577888 8999999999999999999985 5788999987
No 104
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.77 E-value=6.6e-08 Score=89.78 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=90.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...+.++|||..-++..+.|+++|...+ ...--|.|.+.-+-|+.+++.|.... +...-
T Consensus 696 k~~GHrVLIFSQMVRmLDIL~eYL~~r~-ypfQRLDGsvrgelRq~AIDhFnap~--------------------SddFv 754 (1373)
T KOG0384|consen 696 KEGGHRVLIFSQMVRMLDILAEYLSLRG-YPFQRLDGSVRGELRQQAIDHFNAPD--------------------SDDFV 754 (1373)
T ss_pred hcCCceEEEhHHHHHHHHHHHHHHHHcC-CcceeccCCcchHHHHHHHHhccCCC--------------------CCceE
Confidence 4467999999999999999999999998 59999999999999999999999873 22688
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
.|+||-+ .+-||++..++.||.||.-|||..=+|-..||
T Consensus 755 FLLSTRA----GGLGINLatADTVIIFDSDWNPQNDLQAqARa 793 (1373)
T KOG0384|consen 755 FLLSTRA----GGLGINLATADTVIIFDSDWNPQNDLQAQARA 793 (1373)
T ss_pred EEEeccc----CcccccccccceEEEeCCCCCcchHHHHHHHH
Confidence 9999999 99999999999999999999999999988887
No 105
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.77 E-value=9e-08 Score=87.14 Aligned_cols=125 Identities=10% Similarity=0.114 Sum_probs=97.7
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||.|.|.+..+.|++.|.+.| +...+|+..-. ++...+=. +.|.
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~--e~EA~IIa-~AG~------ 473 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN-IPHTVLNAKQN--AREAEIIA-KAGQ------ 473 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC-CCceeecccch--hhHHHHHH-hCCC------
Confidence 45566677777777776655678999999999999999999999998 79999998533 33333322 3441
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCC--------eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~--------~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|.|||++ ++||.|+.--. |||.-+.|.|..---|-.||+||+| |.+-
T Consensus 474 ----------------~GaVTIATNM----AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 474 ----------------KGAITIATNM----AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred ----------------CCeEEEeccc----ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 5789999999 99999997544 8999999999988889999998776 6555
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|++|
T Consensus 534 f~lSL 538 (925)
T PRK12903 534 FFISL 538 (925)
T ss_pred EEEec
Confidence 55553
No 106
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.66 E-value=3e-07 Score=82.39 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
|-.||..|. ..+.++|||..--...+.|.++..-.+ ....-+.|.++.++|...++.|...++
T Consensus 476 LDkLL~~Lk---~~GhRVLIFSQmt~mLDILeDyc~~R~-y~ycRiDGSt~~eeR~~aI~~fn~~~s------------- 538 (971)
T KOG0385|consen 476 LDKLLPKLK---EQGHRVLIFSQMTRMLDILEDYCMLRG-YEYCRLDGSTSHEEREDAIEAFNAPPS------------- 538 (971)
T ss_pred HHHHHHHHH---hCCCeEEEeHHHHHHHHHHHHHHHhcC-ceeEeecCCCCcHHHHHHHHhcCCCCc-------------
Confidence 334555443 467999999999999999999998888 499999999999999999999998731
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
...-.|++|-+ .+-||++..++.||.||.-|+|..=+|-+-||
T Consensus 539 -------~~FiFlLSTRA----GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 539 -------EKFIFLLSTRA----GGLGINLTAADTVILYDSDWNPQVDLQAMDRA 581 (971)
T ss_pred -------ceEEEEEeccc----cccccccccccEEEEecCCCCchhhhHHHHHH
Confidence 15667899999 99999999999999999999999888877777
No 107
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.65 E-value=3.5e-07 Score=82.59 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
....++++-.|.+.+.+.+.+..+-.| ..+..|||.|+..+|+++++.|....+. ..-.
T Consensus 593 k~~~~~v~Isny~~tldl~e~~~~~~g-~~~~rLdG~~~~~qRq~~vd~FN~p~~~--------------------~~vf 651 (776)
T KOG0390|consen 593 KLLVKSVLISNYTQTLDLFEQLCRWRG-YEVLRLDGKTSIKQRQKLVDTFNDPESP--------------------SFVF 651 (776)
T ss_pred hcceEEEEeccHHHHHHHHHHHHhhcC-ceEEEEcCCCchHHHHHHHHhccCCCCC--------------------ceEE
Confidence 334666666777788787777777777 6999999999999999999999987311 2335
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
|.+|-+ .+.||++-+++.||.||++|||..=.|-++|+.|.|
T Consensus 652 LlSsKA----gg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 652 LLSSKA----GGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred EEeccc----ccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 577888 899999999999999999999999999999995544
No 108
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.64 E-value=1.2e-07 Score=86.39 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=81.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--------------------------------------CCccEEEeecCCCHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--------------------------------------ADISFSSLHSDLAETER 65 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--------------------------------------~~i~~~~l~~~~~~~~R 65 (159)
.+.++||||.+++.|+.++..+... . .-+.+.|.+++.++|
T Consensus 459 e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~-~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 459 EGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP-YGVAYHHAGLTSEER 537 (1008)
T ss_pred cCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc-ccceecccccccchH
Confidence 3577999999999998877655432 1 247788999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC----CCChhHHHhhh
Q 031433 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL----PTKKETYIRRM 141 (159)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~----P~~~~~yi~R~ 141 (159)
+.+-..|+.| ...|++||+. ++-|.+.|..+++|-.-. +-+.-.|.|++
T Consensus 538 ~~iE~afr~g-----------------------~i~vl~aTST----laaGVNLPArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 538 EIIEAAFREG-----------------------NIFVLVATST----LAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred HHHHHHHHhc-----------------------CeEEEEecch----hhccCcCCcceeEEeCCccccchhhhhhHHhhh
Confidence 9999999999 8999999999 999999999999986543 24677999999
Q ss_pred hcccCCC
Q 031433 142 TTCLAAG 148 (159)
Q Consensus 142 GR~~~~~ 148 (159)
||+||.+
T Consensus 591 GRAGR~g 597 (1008)
T KOG0950|consen 591 GRAGRTG 597 (1008)
T ss_pred hhhhhcc
Confidence 9997764
No 109
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.63 E-value=5.8e-07 Score=80.82 Aligned_cols=125 Identities=14% Similarity=0.079 Sum_probs=98.6
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......+.++||.|.|.+..+.+++.|.+.+ ++..+|+..-..+| .+++.+ .|.
T Consensus 405 iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~g-I~h~vLNAk~~~~E-A~IIa~--AG~------ 474 (764)
T PRK12326 405 VYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAG-VPAVVLNAKNDAEE-ARIIAE--AGK------ 474 (764)
T ss_pred eEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCC-CcceeeccCchHhH-HHHHHh--cCC------
Confidence 56667778888888777656789999999999999999999999998 89999998644333 333332 221
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC---------------CeEEEccCCCChhHHHhhhhcccCC
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------RVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v---------------~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
.-.|-|||++ ++||.|+.-- =|||--..|.|..---|=.||+||+
T Consensus 475 ----------------~gaVTIATNM----AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQ 534 (764)
T PRK12326 475 ----------------YGAVTVSTQM----AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQ 534 (764)
T ss_pred ----------------CCcEEEEecC----CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccC
Confidence 5679999999 9999999732 2799999999999999999999877
Q ss_pred C--CeEEEEEEe
Q 031433 148 G--TSFSDIILL 157 (159)
Q Consensus 148 ~--g~~i~~v~~ 157 (159)
+ |.+.-|++|
T Consensus 535 GDpGss~f~lSl 546 (764)
T PRK12326 535 GDPGSSVFFVSL 546 (764)
T ss_pred CCCCceeEEEEc
Confidence 5 666666654
No 110
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.57 E-value=3.9e-07 Score=84.90 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=83.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+.+++|||.-++..+-+.+-|-+. +.+....|.|..++.+|.++.++|.+++ .++
T Consensus 1339 sqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp----------------------tID 1396 (1549)
T KOG0392|consen 1339 SQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP----------------------TID 1396 (1549)
T ss_pred ccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC----------------------cee
Confidence 4689999999999999999988776 3234447889999999999999999984 788
Q ss_pred EE-EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 102 MI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 102 vL-V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
|| ++|.+ .+-|+++.+++.||.++--|||..=+|-+-|+
T Consensus 1397 vLlLTThV----GGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1397 VLLLTTHV----GGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred EEEEeeec----cccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 76 67889 99999999999999999999999888877777
No 111
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.53 E-value=5.4e-07 Score=78.46 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=80.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
-.++. |||.. |++..-.+...+.+.+...+.+++|+++++.|.+.-..|... +.+.+
T Consensus 355 lk~GD-CvV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~---------------------~~e~d 411 (700)
T KOG0953|consen 355 LKPGD-CVVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDP---------------------SNECD 411 (700)
T ss_pred CCCCC-eEEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCC---------------------CCccc
Confidence 33444 44433 677889999999998866799999999999999999999885 23799
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCC---------CChhHHHhhhhcccCCC
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELP---------TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P---------~~~~~yi~R~GR~~~~~ 148 (159)
||||||+ .++|+++ +++-||.|++- -+...-.|-+||+||-+
T Consensus 412 vlVAsDA----IGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 412 VLVASDA----IGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred eEEeecc----ccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 9999999 9999996 57888888853 35677889999997764
No 112
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.53 E-value=5.5e-07 Score=82.39 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc--C-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN--L-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~--~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+...++.... ....-+|||.+-.+..+..++.|.+ . ..+.+..|||.++.++..++++.--.+
T Consensus 247 i~~~v~~~~~--~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~------------ 312 (845)
T COG1643 247 IVAAVDIHLR--EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG------------ 312 (845)
T ss_pred HHHHHHHhcc--CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC------------
Confidence 3344443333 3368899999999999999999997 2 247899999999999998866655554
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHhhhhcccCC-C
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAA-G 148 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~R~GR~~~~-~ 148 (159)
+.+|+++|++ ++-+|.+++|++||.-.. |-+-.+-.||.|||||- .
T Consensus 313 -----------~RKVVlATNI----AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p 377 (845)
T COG1643 313 -----------KRKVVLATNI----AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP 377 (845)
T ss_pred -----------cceEEEEccc----cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC
Confidence 5779999999 999999999999996553 23456778999999886 4
Q ss_pred CeEEEE
Q 031433 149 TSFSDI 154 (159)
Q Consensus 149 g~~i~~ 154 (159)
|.|+-+
T Consensus 378 GicyRL 383 (845)
T COG1643 378 GICYRL 383 (845)
T ss_pred ceEEEe
Confidence 888765
No 113
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.51 E-value=1.9e-06 Score=77.52 Aligned_cols=107 Identities=16% Similarity=0.192 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.+.+.+||..- ..++.++|.|..++...+.|...|.. .+ +.+.-+.|..+...|..++++|..+.
T Consensus 532 m~vl~~ll~~W---~kqg~rvllFsqs~~mLdilE~fL~~~~~-ysylRmDGtT~~~~R~~lVd~Fne~~---------- 597 (923)
T KOG0387|consen 532 MKVLAKLLKDW---KKQGDRVLLFSQSRQMLDILESFLRRAKG-YSYLRMDGTTPAALRQKLVDRFNEDE---------- 597 (923)
T ss_pred HHHHHHHHHHH---hhCCCEEEEehhHHHHHHHHHHHHHhcCC-ceEEEecCCCccchhhHHHHhhcCCC----------
Confidence 34455555533 33567999999999999999999994 55 79999999999999999999999873
Q ss_pred CCCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 87 SGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
... .|++|-+ .+-|+++..++-||.||+-|||.+=.|-.-|+
T Consensus 598 ------------s~~VFLLTTrv----GGLGlNLTgAnRVIIfDPdWNPStD~QAreRa 640 (923)
T KOG0387|consen 598 ------------SIFVFLLTTRV----GGLGLNLTGANRVIIFDPDWNPSTDNQARERA 640 (923)
T ss_pred ------------ceEEEEEEecc----cccccccccCceEEEECCCCCCccchHHHHHH
Confidence 444 5688999 99999999999999999999999999987777
No 114
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.46 E-value=3.4e-06 Score=76.59 Aligned_cols=108 Identities=15% Similarity=0.219 Sum_probs=90.7
Q ss_pred HHHHHHHH-HHHHccCCCCC--cEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 8 QETLVELL-HLVVAGRRPGL--PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 8 ~~~l~~ll-~~l~~~~~~~~--k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
...+.+++ ..+.. .+. +++||++.....+.+.+.|...+ +....++|.++.++|...+++|..++
T Consensus 694 ~~~l~~ll~~~~~~---~~~~~kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~-------- 761 (866)
T COG0553 694 LQALDELLLDKLLE---EGHYHKVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADE-------- 761 (866)
T ss_pred HHHHHHHHHHHHHh---hcccccEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCC--------
Confidence 34445555 33332 345 99999999999999999999998 79999999999999999999999962
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+..-.+++|.+ .+.|++...+++||+||..|++....|.+.|+
T Consensus 762 -------------~~~v~lls~ka----gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa 804 (866)
T COG0553 762 -------------EEKVFLLSLKA----GGLGLNLTGADTVILFDPWWNPAVELQAIDRA 804 (866)
T ss_pred -------------CCceEEEEecc----cccceeecccceEEEeccccChHHHHHHHHHH
Confidence 13456677788 99999999999999999999999999988887
No 115
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.44 E-value=2.7e-06 Score=78.27 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=96.3
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......+.++||-|.|....+.++..|.+.+ +...+|+..-..+| ..++. ..|.
T Consensus 546 iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~g-i~h~vLNak~~~~E-a~iia--~AG~------ 615 (970)
T PRK12899 546 FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNR-IEHTVLNAKNHAQE-AEIIA--GAGK------ 615 (970)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC-CcceecccchhhhH-HHHHH--hcCC------
Confidence 45556677777777776656778999999999999999999999998 89999998633332 12332 2231
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCC--------eEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR--------VLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~--------~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|-|||++ ++||.|+.--. |||--..|.+...--|=.||+||+| |.+.
T Consensus 616 ----------------~g~VTIATNm----AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~ 675 (970)
T PRK12899 616 ----------------LGAVTVATNM----AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAK 675 (970)
T ss_pred ----------------CCcEEEeecc----ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCcee
Confidence 4679999999 99999995332 7999999999999999999998775 7666
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|++|
T Consensus 676 f~lSl 680 (970)
T PRK12899 676 FFLSF 680 (970)
T ss_pred EEEEc
Confidence 66654
No 116
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.40 E-value=1.7e-06 Score=79.30 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC--------------------------------------c
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------I 51 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~--------------------------------------i 51 (159)
...+++..+.+ ...-++||||=+++.|++-+++|...+. -
T Consensus 554 ~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~R 631 (1248)
T KOG0947|consen 554 TWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLR 631 (1248)
T ss_pred hHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhh
Confidence 35566665543 3458999999999999999999987510 0
Q ss_pred cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC
Q 031433 52 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 131 (159)
Q Consensus 52 ~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P 131 (159)
-+.+.||++-+--+.-+--=|.+| -++||+||+. +++|++.|.-.+|+ -.+-
T Consensus 632 GiaVHH~GlLPivKE~VE~LFqrG-----------------------lVKVLFATET----FAMGVNMPARtvVF-~Sl~ 683 (1248)
T KOG0947|consen 632 GIAVHHGGLLPIVKEVVELLFQRG-----------------------LVKVLFATET----FAMGVNMPARTVVF-SSLR 683 (1248)
T ss_pred cchhhcccchHHHHHHHHHHHhcC-----------------------ceEEEeehhh----hhhhcCCCceeEEe-eehh
Confidence 145567777666655555567777 8999999999 99999999655554 3333
Q ss_pred ---------CChhHHHhhhhcccCCC
Q 031433 132 ---------TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 132 ---------~~~~~yi~R~GR~~~~~ 148 (159)
-.|-+|.|.+||+||++
T Consensus 684 KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 684 KHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hccCcceeecCChhHHhhhccccccc
Confidence 24789999999999986
No 117
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.35 E-value=3.9e-06 Score=77.83 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=98.2
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.|+||-|.|.+..+.|++.|...+ +..-+|+.....+|- .++.+ .|.
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g-I~H~VLNAK~h~~EA-eIVA~--AG~------ 675 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK-IPHNVLNAKLHQKEA-EIVAE--AGQ------ 675 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC-CcHHHhhccchhhHH-HHHHh--cCC------
Confidence 56677788888888777767789999999999999999999999998 788888876443332 22222 221
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC--------CCCeEEEccCCCChhHHHhhhhcccCCC--CeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAAG--TSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~--------~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i 152 (159)
.-.|-|||++ ++||.|+. +-=+||--..|.|..---|=.||+||+| |.+.
T Consensus 676 ----------------~GaVTIATNM----AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 676 ----------------PGTVTIATNM----AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred ----------------CCcEEEeccC----cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcce
Confidence 5679999999 99999997 3347999999999999999999998876 6666
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
-|++|
T Consensus 736 f~lSL 740 (1112)
T PRK12901 736 FYVSL 740 (1112)
T ss_pred EEEEc
Confidence 66654
No 118
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.34 E-value=9.2e-06 Score=74.96 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=66.9
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
.+.+.+..+.. ..+.+++||++|.+..+.+++.|..... .....+..+.. ..|.+++++|+++
T Consensus 661 ~ia~~i~~l~~--~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~------------- 724 (850)
T TIGR01407 661 EIASYIIEITA--ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNG------------- 724 (850)
T ss_pred HHHHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhC-------------
Confidence 44445554543 2346899999999999999999976210 01223333333 5788999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCe--EEEccCC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINYELP 131 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~--VI~~d~P 131 (159)
+..||++|+. +.+|+|+++..+ ||...+|
T Consensus 725 ----------~~~iLlgt~s----f~EGVD~~g~~l~~viI~~LP 755 (850)
T TIGR01407 725 ----------EKAILLGTSS----FWEGVDFPGNGLVCLVIPRLP 755 (850)
T ss_pred ----------CCeEEEEcce----eecccccCCCceEEEEEeCCC
Confidence 7889999999 999999999885 5656655
No 119
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.30 E-value=2.6e-06 Score=78.29 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------CCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
.+-+.+++..+.. ......+|||-.....+..+.+.|... ..+.+..+|+.|+..+.+.+...--.|
T Consensus 397 ~~Li~~li~~I~~-~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g------ 469 (924)
T KOG0920|consen 397 YDLIEDLIEYIDE-REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKG------ 469 (924)
T ss_pred HHHHHHHHHhccc-CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCC------
Confidence 3445567776665 566799999999999999999999753 125788999999999988776666555
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE--------ccCCCC----------hhHHHhhhhc
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN--------YELPTK----------KETYIRRMTT 143 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~--------~d~P~~----------~~~yi~R~GR 143 (159)
..+|+++|++ ++-.|.+++|-+||. ||.-.+ ...-.||.||
T Consensus 470 -----------------~RKIIlaTNI----AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 470 -----------------TRKIILATNI----AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred -----------------cchhhhhhhh----HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 7999999999 999999999999995 443333 3344699999
Q ss_pred ccC-CCCeEEEEEE
Q 031433 144 CLA-AGTSFSDIIL 156 (159)
Q Consensus 144 ~~~-~~g~~i~~v~ 156 (159)
+|| ..|.++.+.+
T Consensus 529 AGRv~~G~cy~L~~ 542 (924)
T KOG0920|consen 529 AGRVRPGICYHLYT 542 (924)
T ss_pred ccCccCCeeEEeec
Confidence 977 5698887764
No 120
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.30 E-value=3.3e-06 Score=74.71 Aligned_cols=106 Identities=16% Similarity=0.244 Sum_probs=85.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCC-------ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLAD-------ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
.++..-+|||-...++++.+++.|.+... .-+..+||.|+.++..++++.--.|
T Consensus 255 ~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g------------------- 315 (674)
T KOG0922|consen 255 TEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG------------------- 315 (674)
T ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-------------------
Confidence 35556899999999999999999988611 1357899999999988776655555
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHhhhhcccCCC-CeEEEE
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAAG-TSFSDI 154 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~R~GR~~~~~-g~~i~~ 154 (159)
..+|+++|++ ++-.+.++++.+||.-++ |-|..+=.||.||+||.+ |.++-+
T Consensus 316 ----~RKvIlsTNI----AETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRL 386 (674)
T KOG0922|consen 316 ----KRKVILSTNI----AETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRL 386 (674)
T ss_pred ----cceEEEEcce----eeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEe
Confidence 7999999999 999999999999996442 446677889999998864 777654
No 121
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.29 E-value=5.1e-06 Score=77.95 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=82.7
Q ss_pred HHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-------------------------------------CCccEEEeec
Q 031433 16 HLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-------------------------------------ADISFSSLHS 58 (159)
Q Consensus 16 ~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-------------------------------------~~i~~~~l~~ 58 (159)
+++++ .-...++|||+.+++.+...+++++.. + .-+...|.
T Consensus 538 eKVm~-~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLp-ygfaIHhA 615 (1674)
T KOG0951|consen 538 EKVLE-HAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLP-YGFAIHHA 615 (1674)
T ss_pred HHHHH-hCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhh-ccceeecc
Confidence 34444 333489999999999988888877722 1 24667789
Q ss_pred CCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE----EccC----
Q 031433 59 DLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYEL---- 130 (159)
Q Consensus 59 ~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI----~~d~---- 130 (159)
+|+..+|...-+-|+.| .+++||+|-. ++.|++.|.=.++| -||+
T Consensus 616 Gl~R~dR~~~EdLf~~g-----------------------~iqvlvstat----lawgvnlpahtViikgtqvy~pekg~ 668 (1674)
T KOG0951|consen 616 GLNRKDRELVEDLFADG-----------------------HIQVLVSTAT----LAWGVNLPAHTVIIKGTQVYDPEKGR 668 (1674)
T ss_pred CCCcchHHHHHHHHhcC-----------------------ceeEEEeehh----hhhhcCCCcceEEecCccccCcccCc
Confidence 99999999999999999 9999999999 99999999766665 3553
Q ss_pred --CCChhHHHhhhhcccCC
Q 031433 131 --PTKKETYIRRMTTCLAA 147 (159)
Q Consensus 131 --P~~~~~yi~R~GR~~~~ 147 (159)
+-++.+-+|+.||+||.
T Consensus 669 w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 669 WTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred cccCCHHHHHHHHhhcCCC
Confidence 45789999999999774
No 122
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.26 E-value=1.6e-05 Score=71.73 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
-++|..||..+.. .+.+++||..--...+.|...|...+ +...-|.|.....+|+.++++|...+
T Consensus 763 ~r~L~~LLp~~k~---~G~RVLiFSQFTqmLDILE~~L~~l~-~~ylRLDGsTqV~~RQ~lId~Fn~d~----------- 827 (941)
T KOG0389|consen 763 CRKLKELLPKIKK---KGDRVLIFSQFTQMLDILEVVLDTLG-YKYLRLDGSTQVNDRQDLIDEFNTDK----------- 827 (941)
T ss_pred HhHHHHHHHHHhh---cCCEEEEeeHHHHHHHHHHHHHHhcC-ceEEeecCCccchHHHHHHHhhccCC-----------
Confidence 3556666665543 56999999999999999999999998 69999999999999999999999874
Q ss_pred CCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHh
Q 031433 88 GDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR 139 (159)
Q Consensus 88 ~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~ 139 (159)
.+. .|++|-+ .+.||++..+++||.||+..+|-+=.|
T Consensus 828 -----------difVFLLSTKA----GG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 828 -----------DIFVFLLSTKA----GGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred -----------ceEEEEEeecc----CcceecccccceEEEeecCCCCcccch
Confidence 444 5789999 999999999999999999877654444
No 123
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.24 E-value=1.6e-05 Score=72.07 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHcc--CCC-CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhccccccc
Q 031433 8 QETLVELLHLVVAG--RRP-GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 8 ~~~l~~ll~~l~~~--~~~-~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~ 80 (159)
.+.....+...+.. ... ..|+||||.+.++++.+...|.+. ++--+..++|+-.+. +..++.|... .
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~k-e--- 479 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDK-E--- 479 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhc-C---
Confidence 34455555555553 222 479999999999999999999875 212567788865544 4557777662 1
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
.-++|-|+.|+ +.-|+|+|.|..++.+-.=.|...|.|.+||.
T Consensus 480 -----------------~~P~Iaitvdl----L~TGiDvpev~nlVF~r~VrSktkF~QMvGRG 522 (875)
T COG4096 480 -----------------KYPRIAITVDL----LTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRG 522 (875)
T ss_pred -----------------CCCceEEehhh----hhcCCCchheeeeeehhhhhhHHHHHHHhcCc
Confidence 25889999999 99999999999999999999999999999997
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=9.5e-06 Score=74.55 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=96.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
||.+..++...+++.+......+.++||-|.|.+..+.|++.|...+ +...+|+.....+| ..++. +.|.
T Consensus 427 vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g-i~h~VLNAk~~~~E-A~IIa--~AG~------ 496 (913)
T PRK13103 427 VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEG-IEHKVLNAKYHEKE-AEIIA--QAGR------ 496 (913)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC-CcHHHhccccchhH-HHHHH--cCCC------
Confidence 56677788888888777656789999999999999999999999998 78888887644333 22333 2331
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC-------------------------------------CCeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-------------------------------------ARVL 125 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~-------------------------------------v~~V 125 (159)
.-.|-|||++ ++||.||.- -=+|
T Consensus 497 ----------------~GaVTIATNM----AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhV 556 (913)
T PRK13103 497 ----------------PGALTIATNM----AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHV 556 (913)
T ss_pred ----------------CCcEEEeccC----CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEE
Confidence 5679999999 999999951 1278
Q ss_pred EEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 126 INYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
|--..|.|..-=-|=.||+||+| |.+--|++|
T Consensus 557 IgTerheSrRID~QLrGRaGRQGDPGsS~f~lSl 590 (913)
T PRK13103 557 IASERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 590 (913)
T ss_pred EeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 88899999888889999998775 666666654
No 125
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.17 E-value=1.6e-05 Score=71.32 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+..|-+||..+-. .+.++|+|..--+..+.+.++|...+ ....-|.|.....+|...+.+|+...
T Consensus 1030 L~~LDeLL~kLka---egHRvL~yfQMTkM~dl~EdYl~yr~-Y~ylRLDGSsk~~dRrd~vrDwQ~sd----------- 1094 (1185)
T KOG0388|consen 1030 LVVLDELLPKLKA---EGHRVLMYFQMTKMIDLIEDYLVYRG-YTYLRLDGSSKASDRRDVVRDWQASD----------- 1094 (1185)
T ss_pred eeeHHHHHHHhhc---CCceEEehhHHHHHHHHHHHHHHhhc-cceEEecCcchhhHHHHHHhhccCCc-----------
Confidence 3445566665543 46899999999999999999999998 49999999999999999999999962
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
..-.|++|-+ .+-||++..++.||.||.-|+|..=.|-+-|+
T Consensus 1095 -----------iFvFLLSTRA----GGLGINLTAADTViFYdSDWNPT~D~QAMDRA 1136 (1185)
T KOG0388|consen 1095 -----------IFVFLLSTRA----GGLGINLTAADTVIFYDSDWNPTADQQAMDRA 1136 (1185)
T ss_pred -----------eEEEEEeccc----CcccccccccceEEEecCCCCcchhhHHHHHH
Confidence 4556789999 99999999999999999999987777766666
No 126
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.14 E-value=1.7e-05 Score=68.62 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=85.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++.|.+|||.-....+.+...+.+++ +...-+.|..+..+|....++|+..+ +.+
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r~-vg~IRIDGst~s~~R~ll~qsFQ~se----------------------ev~ 545 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKRK-VGSIRIDGSTPSHRRTLLCQSFQTSE----------------------EVR 545 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHcC-CCeEEecCCCCchhHHHHHHHhcccc----------------------ceE
Confidence 5667999999999999999999999997 89999999999999999999999862 333
Q ss_pred -EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHh---hhhcccCCCCeEEEE
Q 031433 102 -MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIR---RMTTCLAAGTSFSDI 154 (159)
Q Consensus 102 -vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~---R~GR~~~~~g~~i~~ 154 (159)
.+++-.+ ++.|+++...+.|+..++||||.-++| |+-|.|..+.+.+-+
T Consensus 546 VAvlsItA----~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 546 VAVLSITA----AGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred EEEEEEee----cccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 3445556 899999999999999999999876665 333334444444443
No 127
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.13 E-value=4.2e-05 Score=68.97 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=72.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHH---------------------HHHHHHHHHhcccccc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAET---------------------ERTLILEEFRHTAMKW 79 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~---------------------~R~~~l~~F~~~~~~~ 79 (159)
+.|++|||.++..|..+.+.|.+.. .....++++..+.+ ....++++|+..
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~---- 589 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE---- 589 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC----
Confidence 5899999999999999999887651 12556666654433 123566666653
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA 146 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~ 146 (159)
+.+++||++|. +..|.|.|.++.++..-+-.+ -.++|-+||+.|
T Consensus 590 ------------------~~~~ilIVvdm----llTGFDaP~l~tLyldKplk~-h~LlQai~R~nR 633 (667)
T TIGR00348 590 ------------------ENPKLLIVVDM----LLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNR 633 (667)
T ss_pred ------------------CCceEEEEEcc----cccccCCCccceEEEeccccc-cHHHHHHHHhcc
Confidence 27899999999 999999999999987665554 468999999966
No 128
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.10 E-value=7.6e-06 Score=73.62 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=81.8
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC--------------------------------------cc
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD--------------------------------------IS 52 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~--------------------------------------i~ 52 (159)
+..+.+-+. .+...++|||+=+++.|+..+-.+.+... --
T Consensus 371 i~kiVkmi~--~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RG 448 (1041)
T KOG0948|consen 371 IYKIVKMIM--ERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRG 448 (1041)
T ss_pred HHHHHHHHH--hhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhc
Confidence 344555444 45678999999999999999988876510 01
Q ss_pred EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----c
Q 031433 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y 128 (159)
Q Consensus 53 ~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~ 128 (159)
+...|+++-+--+.-+-==|+.| -+++|.||+. ++.|++.|.-.+|+- |
T Consensus 449 IGIHHsGLLPIlKE~IEILFqEG-----------------------LvKvLFATET----FsiGLNMPAkTVvFT~~rKf 501 (1041)
T KOG0948|consen 449 IGIHHSGLLPILKEVIEILFQEG-----------------------LVKVLFATET----FSIGLNMPAKTVVFTAVRKF 501 (1041)
T ss_pred cccccccchHHHHHHHHHHHhcc-----------------------HHHHHHhhhh----hhhccCCcceeEEEeecccc
Confidence 33445665554444443446666 8999999999 999999997666552 2
Q ss_pred c---CCC-ChhHHHhhhhcccCCC----CeEEEEEE
Q 031433 129 E---LPT-KKETYIRRMTTCLAAG----TSFSDIIL 156 (159)
Q Consensus 129 d---~P~-~~~~yi~R~GR~~~~~----g~~i~~v~ 156 (159)
| +-| +.-.|+|..||+||++ |.+|.++.
T Consensus 502 DG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiD 537 (1041)
T KOG0948|consen 502 DGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMID 537 (1041)
T ss_pred CCcceeeecccceEEecccccccCCCCCceEEEEec
Confidence 2 111 4568999999998876 88887764
No 129
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.04 E-value=4.2e-05 Score=66.44 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=91.6
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
+++-|.|.+-|..+.+ ...--|.|||..--...+.+...|.+.| +.++-|-|+|++..|..+++.|.+..
T Consensus 619 STKIEAL~EEl~~l~~-rd~t~KsIVFSQFTSmLDLi~~rL~kaG-fscVkL~GsMs~~ardatik~F~nd~-------- 688 (791)
T KOG1002|consen 619 STKIEALVEELYFLRE-RDRTAKSIVFSQFTSMLDLIEWRLGKAG-FSCVKLVGSMSPAARDATIKYFKNDI-------- 688 (791)
T ss_pred hhHHHHHHHHHHHHHH-cccchhhhhHHHHHHHHHHHHHHhhccC-ceEEEeccCCChHHHHHHHHHhccCC--------
Confidence 4566778877776665 5556789999999999999999999998 69999999999999999999999973
Q ss_pred ccCCCCCCCCCCCCceeEEEEe-cCCCCCCcCCCCCCCCCeEEEccCCCChh------HHHhhhhcc
Q 031433 85 EQSGDESETGKDEHKSHMIVVT-DACLPLLSSGESAISARVLINYELPTKKE------TYIRRMTTC 144 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~T-d~~~~~~~rGid~~~v~~VI~~d~P~~~~------~yi~R~GR~ 144 (159)
.++|++.+ .+ .+-.+++..+++|++.|+=|++. +-+||||..
T Consensus 689 --------------~c~vfLvSLkA----GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~ 737 (791)
T KOG1002|consen 689 --------------DCRVFLVSLKA----GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQY 737 (791)
T ss_pred --------------CeEEEEEEecc----CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCc
Confidence 77776554 44 55668999999999999888765 556777743
No 130
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.02 E-value=4e-05 Score=57.49 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=57.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
+..++||++|.+..+.+.+.+..... -....+.. +..++...+++|+.+ .-.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~-----------------------~~~il 63 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG-----------------------EGAIL 63 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS-----------------------SSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc-----------------------cCeEE
Confidence 48999999999999999999987630 01122222 356788999999998 78899
Q ss_pred EEec--CCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 104 VVTD--ACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 104 V~Td--~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
+++. - +.+|+|+++ ++.||...+|.
T Consensus 64 ~~v~~g~----~~EGiD~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 64 LAVAGGS----FSEGIDFPGDLLRAVIIVGLPF 92 (167)
T ss_dssp EEETTSC----CGSSS--ECESEEEEEEES---
T ss_pred EEEeccc----EEEeecCCCchhheeeecCCCC
Confidence 9997 7 899999986 66799999884
No 131
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.89 E-value=0.00026 Score=65.10 Aligned_cols=88 Identities=10% Similarity=0.188 Sum_probs=67.7
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC-C-HHHHHHHHHHHhccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL-A-ETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~-~-~~~R~~~l~~F~~~~~~~~ 80 (159)
|+.+..++...+++.+......+.|+||-|.|.+..+.+++.|...+ +...+|+..- . .+| ..++.+ .|.
T Consensus 402 v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~E-A~IIA~--AG~---- 473 (870)
T CHL00122 402 IYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYR-LPHQLLNAKPENVRRE-SEIVAQ--AGR---- 473 (870)
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcC-CccceeeCCCccchhH-HHHHHh--cCC----
Confidence 45556667777777766656789999999999999999999999998 8999999863 2 222 334443 331
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI 120 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~ 120 (159)
.-.|-|||++ ++||.|+.
T Consensus 474 ------------------~G~VTIATNM----AGRGTDI~ 491 (870)
T CHL00122 474 ------------------KGSITIATNM----AGRGTDII 491 (870)
T ss_pred ------------------CCcEEEeccc----cCCCcCee
Confidence 5779999999 99999984
No 132
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.83 E-value=0.00011 Score=68.12 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCc---hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns---~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
..++..++++.+ ++-.|||++. ++.+++++++|++.| +++..+|+. ..+.++.|..|
T Consensus 323 ~~e~~~elvk~l------G~GgLIfV~~d~G~e~aeel~e~Lr~~G-i~a~~~~a~-----~~~~le~F~~G-------- 382 (1187)
T COG1110 323 SLEKVVELVKKL------GDGGLIFVPIDYGREKAEELAEYLRSHG-INAELIHAE-----KEEALEDFEEG-------- 382 (1187)
T ss_pred cHHHHHHHHHHh------CCCeEEEEEcHHhHHHHHHHHHHHHhcC-ceEEEeecc-----chhhhhhhccC--------
Confidence 345666666644 3567999999 999999999999998 799999983 26779999999
Q ss_pred cccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC-CCeEEEccCCC
Q 031433 84 TEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS-ARVLINYELPT 132 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~-v~~VI~~d~P~ 132 (159)
++++||....-+--+.||||.|. ++++|.|+.|.
T Consensus 383 ---------------eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 383 ---------------EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ---------------ceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 89999986554445899999975 67899999994
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=97.81 E-value=0.00038 Score=60.74 Aligned_cols=102 Identities=19% Similarity=0.195 Sum_probs=76.3
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
.++.|-..- +..+.|+|||..+.-...+.+-.| + --.++|..++.+|.++|+.|+..+
T Consensus 531 aCqfLI~~H--E~RgDKiIVFsDnvfALk~YAikl---~---KpfIYG~Tsq~ERm~ILqnFq~n~-------------- 588 (776)
T KOG1123|consen 531 ACQFLIKFH--ERRGDKIIVFSDNVFALKEYAIKL---G---KPFIYGPTSQNERMKILQNFQTNP-------------- 588 (776)
T ss_pred HHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHc---C---CceEECCCchhHHHHHHHhcccCC--------------
Confidence 344444333 346799999987755544444333 3 246899999999999999999873
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC-CChhHHHhhhhcccC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP-TKKETYIRRMTTCLA 146 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P-~~~~~yi~R~GR~~~ 146 (159)
.++-+..+-+ ..-.+|+|+++++|+...- .+...=.||.||..|
T Consensus 589 --------~vNTIFlSKV----gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILR 633 (776)
T KOG1123|consen 589 --------KVNTIFLSKV----GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILR 633 (776)
T ss_pred --------ccceEEEeec----cCccccCCcccEEEEEcccccchHHHHHHHHHHHH
Confidence 7887888888 8899999999999987754 456677899999844
No 134
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.79 E-value=0.00012 Score=67.70 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=87.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---------------------CCccEEEeecCCCHHHHHHHHHHHhccccccc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---------------------ADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---------------------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~ 80 (159)
+.-+.|+|||..+..+.+.+-.+|..- .+....-|.|.....+|.+..++|.....
T Consensus 1139 eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~N--- 1215 (1567)
T KOG1015|consen 1139 EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTN--- 1215 (1567)
T ss_pred HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCccc---
Confidence 456899999999999999998888742 12467788899999999999999988621
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEE
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFS 152 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i 152 (159)
-...-.||+|-+ .+-||++-.++-||.||..|+|..=.|-|=|+ .++...++
T Consensus 1216 ----------------lRaRl~LISTRA----GsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1216 ----------------LRARLFLISTRA----GSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred ----------------ceeEEEEEeecc----CccccceeecceEEEEecccCCccchHHHHHHHhhcCcCcee
Confidence 112347899999 99999999999999999999999999988888 44444443
No 135
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.74 E-value=0.00021 Score=66.47 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=78.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CC------------------ccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----AD------------------ISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~------------------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
.+.+++|||.++..+...++.|.+. |. --....|.+|..++|.-.-+.|..|
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G------ 421 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG------ 421 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC------
Confidence 3799999999999999888888864 10 1234567899999999999999999
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE-----ccCCC------ChhHHHhhhhcccC----
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN-----YELPT------KKETYIRRMTTCLA---- 146 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~-----~d~P~------~~~~yi~R~GR~~~---- 146 (159)
.++||+||.. ++=|+++|. .+||- ||.-. ..-+-+|-.||+||
T Consensus 422 -----------------~i~vL~cTaT----LAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 422 -----------------HIKVLCCTAT----LAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred -----------------CceEEEecce----eeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 8999999999 999999996 45553 33332 23456777777755
Q ss_pred CCCeEEEE
Q 031433 147 AGTSFSDI 154 (159)
Q Consensus 147 ~~g~~i~~ 154 (159)
..|.++-+
T Consensus 480 ~~G~giIi 487 (1230)
T KOG0952|consen 480 SSGEGIII 487 (1230)
T ss_pred CCceEEEE
Confidence 45666654
No 136
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.73 E-value=8e-05 Score=66.48 Aligned_cols=108 Identities=11% Similarity=0.146 Sum_probs=83.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC--------CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~--------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
..+..-+|||---.+..+...+.|... ..+-+..+|+.++.+.+.++++.--.|
T Consensus 470 tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g------------------ 531 (902)
T KOG0923|consen 470 TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG------------------ 531 (902)
T ss_pred ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC------------------
Confidence 445578999988877777666555543 236788999999999988887655444
Q ss_pred CCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC------------------CChhHHHhhhhcccCCC-CeEEEE
Q 031433 94 GKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------------------TKKETYIRRMTTCLAAG-TSFSDI 154 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P------------------~~~~~yi~R~GR~~~~~-g~~i~~ 154 (159)
..+|++||++ ++-.|.+++|.+||.=++. =+..+-.||+||+||-+ |.|+-+
T Consensus 532 -----aRKVVLATNI----AETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRL 602 (902)
T KOG0923|consen 532 -----ARKVVLATNI----AETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRL 602 (902)
T ss_pred -----ceeEEEeecc----hhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEe
Confidence 6899999999 9999999999999965432 24556689999998865 888776
Q ss_pred EE
Q 031433 155 IL 156 (159)
Q Consensus 155 v~ 156 (159)
-+
T Consensus 603 Yt 604 (902)
T KOG0923|consen 603 YT 604 (902)
T ss_pred ec
Confidence 54
No 137
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.72 E-value=8.8e-05 Score=66.49 Aligned_cols=119 Identities=13% Similarity=0.225 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcc--CCCCCcEEEEeCchHHHHHHHH----HHhcC---C--CccEEEeecCCCHHHHHHHHHHHhcccc
Q 031433 9 ETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCS----AVSNL---A--DISFSSLHSDLAETERTLILEEFRHTAM 77 (159)
Q Consensus 9 ~~l~~ll~~l~~~--~~~~~k~iIF~ns~~~~~~l~~----~L~~~---~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~ 77 (159)
+.....+.+.+.. .....-+|||..-.+.++..+. .|.+. + .+.+..+++.|+.+-+.++++.--.+
T Consensus 545 DYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-- 622 (1042)
T KOG0924|consen 545 DYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-- 622 (1042)
T ss_pred HHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC--
Confidence 4444444443322 2334678999887766555444 44432 2 47899999999999888776655555
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHh
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIR 139 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~ 139 (159)
..+++|+|++ ++-.+.++++.+||..+. |-+...--|
T Consensus 623 ---------------------vRK~IvATNI----AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q 677 (1042)
T KOG0924|consen 623 ---------------------VRKCIVATNI----AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ 677 (1042)
T ss_pred ---------------------ceeEEEeccc----hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence 8999999999 999999999999997664 334555679
Q ss_pred hhhcccCCC-CeEEEE
Q 031433 140 RMTTCLAAG-TSFSDI 154 (159)
Q Consensus 140 R~GR~~~~~-g~~i~~ 154 (159)
|.||+||.+ |.|+-+
T Consensus 678 RaGRAGRt~pG~cYRl 693 (1042)
T KOG0924|consen 678 RAGRAGRTGPGTCYRL 693 (1042)
T ss_pred hccccCCCCCcceeee
Confidence 999998864 777654
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.67 E-value=0.00078 Score=60.34 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=66.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+...+..+.. .. +.+++||+.|.+..+.+.+.|...........+|+ ..+...+++|+...
T Consensus 466 ~~~~~i~~~~~-~~-~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~------------- 527 (654)
T COG1199 466 KLAAYLREILK-AS-PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASG------------- 527 (654)
T ss_pred HHHHHHHHHHh-hc-CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhc-------------
Confidence 34444444544 33 34999999999999999999988752123444443 44458999999961
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--CeEEEccCCC
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--~~VI~~d~P~ 132 (159)
..-++|+|.- +++|+|+++= +.||...+|.
T Consensus 528 ---------~~~~lv~~gs----f~EGVD~~g~~l~~vvI~~lPf 559 (654)
T COG1199 528 ---------EGLILVGGGS----FWEGVDFPGDALRLVVIVGLPF 559 (654)
T ss_pred ---------CCeEEEeecc----ccCcccCCCCCeeEEEEEecCC
Confidence 2279999999 9999999876 5688888774
No 139
>COG4889 Predicted helicase [General function prediction only]
Probab=97.61 E-value=3.4e-05 Score=70.77 Aligned_cols=99 Identities=11% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc-----------C-CCccEEEe--ecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN-----------L-ADISFSSL--HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~-----------~-~~i~~~~l--~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
-+++|-||.+.++...+++.+.. . ..+++..= .|.|.-.+|.+.+. ..+.
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~-l~~~--------------- 523 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLE-LKNT--------------- 523 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHh-ccCC---------------
Confidence 36788899988887666554332 2 12444444 48899988843332 2211
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
.....++||----+ +++|+|+|..+-||.||+-.+..+.+|-+||++|.
T Consensus 524 ----~~~neckIlSNaRc----LSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 524 ----FEPNECKILSNARC----LSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred ----CCcchheeeccchh----hhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 11126777766666 99999999999999999999999999999999664
No 140
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.60 E-value=0.00033 Score=64.85 Aligned_cols=108 Identities=15% Similarity=0.141 Sum_probs=89.9
Q ss_pred HHHHHHHHc-cCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 12 VELLHLVVA-GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 12 ~~ll~~l~~-~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
.+||+.++- ....+.+++.||.-..-.+.+..+|.-.+ +...-+.|....++|-..++.|..+.++
T Consensus 712 fELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~-~kYlRLDG~TK~~eRg~ll~~FN~Pds~------------ 778 (1157)
T KOG0386|consen 712 FELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE-YKYLRLDGQTKVEERGDLLEIFNAPDSP------------ 778 (1157)
T ss_pred HHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh-hheeeecCCcchhhHHHHHHHhcCCCCc------------
Confidence 345554442 23467999999999999999999999887 5999999999999999999999997433
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
-...|.+|.+ .+.|++.+-++.||-||.-|++-...|+--|+
T Consensus 779 --------yf~Fllstra----gglglNlQtadtviifdsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 779 --------YFIFLLSTRA----GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRA 820 (1157)
T ss_pred --------eeeeeeeecc----cccccchhhcceEEEecCCCCchhHHHHHHHH
Confidence 3667899999 99999999999999999999987776655554
No 141
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.59 E-value=0.00028 Score=64.90 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHHHccC------CCCCcEEEEeCchHHHHHHHHHHhc
Q 031433 5 FTFQETLVELLHLVVAGR------RPGLPMIVCCSSRDELDAVCSAVSN 47 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~------~~~~k~iIF~ns~~~~~~l~~~L~~ 47 (159)
.++-+.|.++|+.+..+. ....++||||+..++|..|.++|..
T Consensus 269 ~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 269 NPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 356677888888776531 4457899999999999999999965
No 142
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.56 E-value=0.00013 Score=67.43 Aligned_cols=69 Identities=19% Similarity=0.211 Sum_probs=61.4
Q ss_pred EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC-C
Q 031433 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-P 131 (159)
Q Consensus 53 ~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~-P 131 (159)
+.+.|++|+...|..+--=||.| ...||++|.. ++-||+.|.-.+|+--|. -
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g-----------------------~L~VlfaT~T----LsLGiNMPCrTVvF~gDsLQ 1017 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQG-----------------------HLQVLFATET----LSLGINMPCRTVVFAGDSLQ 1017 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcC-----------------------ceEEEEEeee----hhcccCCCceeEEEeccccc
Confidence 45678999999999998899999 9999999999 999999998777777664 4
Q ss_pred CChhHHHhhhhcccCCC
Q 031433 132 TKKETYIRRMTTCLAAG 148 (159)
Q Consensus 132 ~~~~~yi~R~GR~~~~~ 148 (159)
-++-.|-|.+||+||++
T Consensus 1018 L~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 1018 LDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cCchhHHhhhccccccc
Confidence 58999999999999986
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.55 E-value=0.0015 Score=61.07 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=67.2
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc-cEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i-~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
.+.+.+..+.. ..+.+++||++|.+..+.+++.|...... ....+.-+++...|.+++++|+++
T Consensus 739 ~la~~i~~l~~--~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~------------- 803 (928)
T PRK08074 739 EVAAYIAKIAK--ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF------------- 803 (928)
T ss_pred HHHHHHHHHHH--hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-------------
Confidence 34444444443 23468999999999999999999865210 122333344445678899999987
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--CeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--~~VI~~d~P~ 132 (159)
+-.||++|.. +.+|+|+|+- ++||...+|.
T Consensus 804 ----------~~~iLlG~~s----FwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 804 ----------DKAILLGTSS----FWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred ----------CCeEEEecCc----ccCccccCCCceEEEEEecCCC
Confidence 6779999999 9999999876 6687777664
No 144
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.55 E-value=0.00039 Score=65.06 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=80.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---------------------------Ccc-------------EEEeecCCCH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---------------------------DIS-------------FSSLHSDLAE 62 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---------------------------~i~-------------~~~l~~~~~~ 62 (159)
....++|+||-+++.|+..+..+.... .+. ..+.|++|=+
T Consensus 377 ~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP 456 (1041)
T COG4581 377 DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLP 456 (1041)
T ss_pred hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccch
Confidence 445899999999999999888887320 011 2356788888
Q ss_pred HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE----Ecc----CCCCh
Q 031433 63 TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI----NYE----LPTKK 134 (159)
Q Consensus 63 ~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI----~~d----~P~~~ 134 (159)
..|..+-.-|..| -++|+++|+. ++.|++.|.=++|+ .|| -+-++
T Consensus 457 ~~K~~vE~Lfq~G-----------------------LvkvvFaTeT----~s~GiNmPartvv~~~l~K~dG~~~r~L~~ 509 (1041)
T COG4581 457 AIKELVEELFQEG-----------------------LVKVVFATET----FAIGINMPARTVVFTSLSKFDGNGHRWLSP 509 (1041)
T ss_pred HHHHHHHHHHhcc-----------------------ceeEEeehhh----hhhhcCCcccceeeeeeEEecCCceeecCh
Confidence 8888888888888 8999999999 99999999655543 222 24478
Q ss_pred hHHHhhhhcccCCC----CeEEEE
Q 031433 135 ETYIRRMTTCLAAG----TSFSDI 154 (159)
Q Consensus 135 ~~yi~R~GR~~~~~----g~~i~~ 154 (159)
..|.|..||+||++ |.+|.+
T Consensus 510 gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 510 GEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred hHHHHhhhhhccccccccceEEEe
Confidence 99999999998886 666554
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.44 E-value=0.0037 Score=56.86 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.+..+.. ....++||++|.+..+.+++.|..... .....+|. ..|.+++++|++.
T Consensus 521 ~~~~~~i~~l~~---~~gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~---~~~~~ll~~f~~~------------- 580 (697)
T PRK11747 521 AEMAEFLPELLE---KHKGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGD---QPRQRLLEKHKKR------------- 580 (697)
T ss_pred HHHHHHHHHHHh---cCCCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCC---chHHHHHHHHHHH-------------
Confidence 344444544543 345689999999999999999975422 33455664 3567888888752
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
...++..||++|.. +.+|+|+|+ +++||...+|.
T Consensus 581 ------~~~~~~~VL~g~~s----f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 581 ------VDEGEGSVLFGLQS----FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ------hccCCCeEEEEecc----ccccccCCCCceEEEEEEcCCC
Confidence 00015679999999 999999987 67888877763
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.37 E-value=0.0047 Score=53.27 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=82.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
......+|||++|-=.--.|-++|++.+ +....+|.-.+..+-.++-..|.+| +.+
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~~-~sF~~i~EYts~~~isRAR~~F~~G-----------------------~~~ 352 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKEN-ISFVQISEYTSNSDISRARSQFFHG-----------------------RKP 352 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhcC-CeEEEecccCCHHHHHHHHHHHHcC-----------------------Cce
Confidence 3456899999999998889999999887 7999999999999999999999999 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+|+.|+- -..=|=..+.++++||.|.+|..+.-|-.-+.-.
T Consensus 353 iLL~TER--~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~ 393 (442)
T PF06862_consen 353 ILLYTER--FHFFRRYRIRGIRHVIFYGPPENPQFYSELLNML 393 (442)
T ss_pred EEEEEhH--HhhhhhceecCCcEEEEECCCCChhHHHHHHhhh
Confidence 9999985 0123445678899999999999999887766544
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.29 E-value=0.0012 Score=61.03 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=68.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC-CCHHHHHHHHHHHhcccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~-~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
++.+..++...+++.+......+.|+||-|.|.+..+.+++.|...| +...+|+.. ...+.=..++.+ .|.
T Consensus 417 vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~g-i~h~vLNAk~~~~~~EA~IIa~--AG~----- 488 (939)
T PRK12902 417 VYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQG-IPHNLLNAKPENVEREAEIVAQ--AGR----- 488 (939)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcC-CchheeeCCCcchHhHHHHHHh--cCC-----
Confidence 45566777777777777656789999999999999999999999998 899999986 222222334443 331
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCC
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAIS 121 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~ 121 (159)
.-.|-|||++ ++||.|+.-
T Consensus 489 -----------------~GaVTIATNM----AGRGTDIkL 507 (939)
T PRK12902 489 -----------------KGAVTIATNM----AGRGTDIIL 507 (939)
T ss_pred -----------------CCcEEEeccC----CCCCcCEee
Confidence 5679999999 999999853
No 148
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.29 E-value=0.006 Score=56.49 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=58.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.+++|+++|.+..+.+++.|.... ... ...|.-. .|.+++++|+++ +..||
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~-~~~-l~Qg~~~--~~~~l~~~F~~~-----------------------~~~vL 698 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQ-VSH-LAQEKNG--TAYNIKKRFDRG-----------------------EQQIL 698 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcC-CcE-EEeCCCc--cHHHHHHHHHcC-----------------------CCeEE
Confidence 45799999999999999999997653 344 4444322 245689999987 67899
Q ss_pred EEecCCCCCCcCCCCCCC--CCeEEEccCC
Q 031433 104 VVTDACLPLLSSGESAIS--ARVLINYELP 131 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~--v~~VI~~d~P 131 (159)
+.|+. +.+|+|+|+ ...||...+|
T Consensus 699 lG~~s----FwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 699 LGLGS----FWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred Eecch----hhCCCCCCCCCeEEEEEecCC
Confidence 99999 999999973 4555555555
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.24 E-value=0.0087 Score=54.42 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc------cEEEeecCCCHHHHHHHHHHHhcccccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI------SFSSLHSDLAETERTLILEEFRHTAMKWNQKV 83 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i------~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~ 83 (159)
.+.+++..+.. ..+..++||.+|-...+.+.+.+.+.+.. .....-+. ...++..++++|+..-
T Consensus 509 ~l~~~i~~~~~--~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~------- 578 (705)
T TIGR00604 509 NLGELLVEFSK--IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAV------- 578 (705)
T ss_pred HHHHHHHHHhh--cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHH-------
Confidence 34444444443 23578999999999999999988865310 12222222 2257889999997630
Q ss_pred cccCCCCCCCCCCCCceeEEEEe--cCCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 84 TEQSGDESETGKDEHKSHMIVVT--DACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~vLV~T--d~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
..++..||+++ .- +++|||+++ ++.||...+|.
T Consensus 579 ------------~~~~gavL~av~gGk----~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 579 ------------SEGRGAVLLSVAGGK----VSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred ------------hcCCceEEEEecCCc----ccCccccCCCCCcEEEEEccCC
Confidence 00145699998 77 999999987 67899999886
No 150
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.02 E-value=0.0072 Score=54.62 Aligned_cols=110 Identities=15% Similarity=0.174 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+..+.++.++.++ .....|++|-..=....+.+...|.+.| .....+||.....+|+.++++|...+
T Consensus 730 Ki~~~l~~le~i~--~~skeK~viVSQwtsvLniv~~hi~~~g-~~y~si~Gqv~vK~Rq~iv~~FN~~k---------- 796 (901)
T KOG4439|consen 730 KIAMVLEILETIL--TSSKEKVVIVSQWTSVLNIVRKHIQKGG-HIYTSITGQVLVKDRQEIVDEFNQEK---------- 796 (901)
T ss_pred HHHHHHHHHHHHh--hcccceeeehhHHHHHHHHHHHHHhhCC-eeeeeecCccchhHHHHHHHHHHhcc----------
Confidence 4455666777663 3455777777776677788889999988 59999999999999999999998852
Q ss_pred CCCCCCCCCCCCceeEE-EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 87 SGDESETGKDEHKSHMI-VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vL-V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+..+|+ ++=.+ .+-|+++.+.+|+|..|+=|++.==-|-+-|.
T Consensus 797 -----------~~~rVmLlSLtA----GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRI 840 (901)
T KOG4439|consen 797 -----------GGARVMLLSLTA----GGVGLNLIGANHLILVDLHWNPALEQQACDRI 840 (901)
T ss_pred -----------CCceEEEEEEcc----CcceeeecccceEEEEecccCHHHHHHHHHHH
Confidence 234444 45455 78899999999999999999997666655555
No 151
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0031 Score=57.48 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=61.7
Q ss_pred HHHHHHHHhcC-CCccEEEeecCCCHH--HHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCc
Q 031433 38 LDAVCSAVSNL-ADISFSSLHSDLAET--ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLS 114 (159)
Q Consensus 38 ~~~l~~~L~~~-~~i~~~~l~~~~~~~--~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~ 114 (159)
++.+.+.|.+. +...+..+.+|.... .-...+++|.+| +..|||-|.+ ++
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-----------------------e~dILiGTQm----ia 545 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-----------------------EADILIGTQM----IA 545 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-----------------------CCCeeecchh----hh
Confidence 56777777765 335888888886543 345689999998 8999999999 99
Q ss_pred CCCCCCCCCeEE--EccC----C--C----ChhHHHhhhhcccCC
Q 031433 115 SGESAISARVLI--NYEL----P--T----KKETYIRRMTTCLAA 147 (159)
Q Consensus 115 rGid~~~v~~VI--~~d~----P--~----~~~~yi~R~GR~~~~ 147 (159)
.|.|||++.+|. |-|. | + ...-+.|=.||+||.
T Consensus 546 KG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~ 590 (730)
T COG1198 546 KGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRA 590 (730)
T ss_pred cCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccC
Confidence 999999999865 4442 2 1 234567888888774
No 152
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.00071 Score=61.77 Aligned_cols=52 Identities=10% Similarity=0.119 Sum_probs=41.1
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEcc--------CCCChhHH----------HhhhhcccCCC-CeEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYE--------LPTKKETY----------IRRMTTCLAAG-TSFSDI 154 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d--------~P~~~~~y----------i~R~GR~~~~~-g~~i~~ 154 (159)
..-++|+|++ ++-.+.+|++.+||..+ --..++.| -||+||+||.+ |+|+-+
T Consensus 630 ~RLcVVaTNV----AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRL 700 (1172)
T KOG0926|consen 630 ERLCVVATNV----AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRL 700 (1172)
T ss_pred ceEEEEeccc----hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeeh
Confidence 6779999999 99999999999999654 33333333 59999998876 888754
No 153
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.86 E-value=0.007 Score=54.87 Aligned_cols=77 Identities=18% Similarity=0.231 Sum_probs=66.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.+++|.++|+.-++..++.+++. + +++..+||+++..+|.++++...+| +
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~-i~v~ll~G~~~~~~r~~~~~~l~~g-----------------------~ 364 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLG-IRVALLTGSLKGKERREILEAIASG-----------------------E 364 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcC-cEEEEEcCCCCHHHHHHHHHHHhCC-----------------------C
Confidence 4679999999999999888777654 4 7999999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
..|+|+|.. ++...+.+.++.+||.
T Consensus 365 ~~IvVgT~~---ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 365 ADIVIGTHA---LIQDDVEFHNLGLVII 389 (681)
T ss_pred CCEEEchHH---HhcccchhcccceEEE
Confidence 999999986 2566778899998884
No 154
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.85 E-value=0.0028 Score=58.16 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=71.5
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
+|.+..++...+++.+......++|+||-+.+.+..+.+++.|.+.+ ++..+|...-..++ .-+=.+...
T Consensus 407 vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~-i~h~VLNAk~h~~E--A~Iia~AG~------- 476 (822)
T COG0653 407 VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAG-IPHNVLNAKNHARE--AEIIAQAGQ------- 476 (822)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcC-CCceeeccccHHHH--HHHHhhcCC-------
Confidence 56777888888888888777889999999999999999999999998 78888887655333 323222222
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCC
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISAR 123 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~ 123 (159)
...|-|+|++ ++||-|+.--.
T Consensus 477 ----------------~gaVTiATNM----AGRGTDIkLg~ 497 (822)
T COG0653 477 ----------------PGAVTIATNM----AGRGTDIKLGG 497 (822)
T ss_pred ----------------CCcccccccc----ccCCcccccCC
Confidence 4568899999 99999986443
No 155
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.64 E-value=0.021 Score=51.78 Aligned_cols=77 Identities=13% Similarity=0.073 Sum_probs=64.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
++++||.+++++-+..+.+.|++.-+..+..+||+++..+|.+.+.+...+ ..+|+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-----------------------~~~IVV 246 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-----------------------EAKVVI 246 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-----------------------CCCEEE
Confidence 689999999999999999999875226899999999999999999998888 789999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 105 VTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+|.- .. -+.+.++.+||--+
T Consensus 247 gTrs----al-~~p~~~l~liVvDE 266 (679)
T PRK05580 247 GARS----AL-FLPFKNLGLIIVDE 266 (679)
T ss_pred eccH----Hh-cccccCCCEEEEEC
Confidence 9974 22 25567788877555
No 156
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.51 E-value=0.056 Score=39.53 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=38.2
Q ss_pred eecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC--CeEEEccCCC
Q 031433 56 LHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA--RVLINYELPT 132 (159)
Q Consensus 56 l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v--~~VI~~d~P~ 132 (159)
+.-+....+...++++|+... +..||+++.- +++|+|+++- +.||...+|.
T Consensus 27 ~~e~~~~~~~~~~l~~f~~~~----------------------~~~iL~~~~~----~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEAC----------------------ENAILLATAR----FSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred EEeCCChhHHHHHHHHHHHcC----------------------CCEEEEEccc----eecceecCCCCeeEEEEEecCC
Confidence 333445556788999999851 2369999988 9999999874 5788888773
No 157
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.48 E-value=0.025 Score=49.62 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+....++...+. .++++||.+++..-+..+++.|++.-...+..+||+++..+|.+.+.+-.+|
T Consensus 12 ~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g------------- 75 (505)
T TIGR00595 12 EVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG------------- 75 (505)
T ss_pred HHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-------------
Confidence 334444444433 3679999999999999999999875335899999999999999999888887
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+.+|+|+|.. +. =..+++..+||--+
T Consensus 76 ----------~~~IVVGTrs----al-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 76 ----------EILVVIGTRS----AL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ----------CCCEEECChH----HH-cCcccCCCEEEEEC
Confidence 7889999875 22 24567778877544
No 158
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=96.46 E-value=0.0022 Score=62.40 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=75.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC-----------HHHHHHHHHHHhcccccccccccccCCCCCCCC
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA-----------ETERTLILEEFRHTAMKWNQKVTEQSGDESETG 94 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~-----------~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~ 94 (159)
-..|+||+.+.++-.+.+.+++..-..+..+.|.+. .-.+.+++..|+..
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~------------------- 353 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH------------------- 353 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-------------------
Confidence 455999999999998888888763224444555432 12356688888887
Q ss_pred CCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 95 KDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 95 ~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
.+++|+.|.+ +.+|+|++.++.|+.++.|.....|+|+.||+
T Consensus 354 ----~ln~L~~~~~----~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~ 395 (1606)
T KOG0701|consen 354 ----ELNLLIATSV----LEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRA 395 (1606)
T ss_pred ----hhhHHHHHHH----HHhhcchhhhhhheeccCcchHHHHHHhhccc
Confidence 8999999999 99999999999999999999999999999997
No 159
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.44 E-value=0.018 Score=51.82 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=65.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.+++|-++|+.-++..++.+++. + +++..+||+++..+|...++...+| +
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g-i~v~lltg~~~~~~r~~~~~~i~~g-----------------------~ 338 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLG-IEVALLTGSLKGKRRKELLETIASG-----------------------Q 338 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccC-cEEEEEecCCCHHHHHHHHHHHhCC-----------------------C
Confidence 4679999999999999888777653 4 7999999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
.+|+|+|.. ++...+.+.++.+||-
T Consensus 339 ~~IiVgT~~---ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 339 IHLVVGTHA---LIQEKVEFKRLALVII 363 (630)
T ss_pred CCEEEecHH---HHhccccccccceEEE
Confidence 999999987 3556788888988874
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.22 E-value=0.058 Score=48.96 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+..++++...+. .++++||.++....+..+.+.|+..-+ -.+..+|++++..+|.+.+.+.++|
T Consensus 173 KTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G---------- 239 (665)
T PRK14873 173 WARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG---------- 239 (665)
T ss_pred HHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC----------
Confidence 34555666665554 478999999999999999999997632 4799999999999999999999998
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+.+|+|-|-. +-=.=+++..+||-.|
T Consensus 240 -------------~~~IViGtRS-----AvFaP~~~LgLIIvdE 265 (665)
T PRK14873 240 -------------QARVVVGTRS-----AVFAPVEDLGLVAIWD 265 (665)
T ss_pred -------------CCcEEEEcce-----eEEeccCCCCEEEEEc
Confidence 8899998874 3334456666766554
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.19 E-value=0.049 Score=50.16 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=69.3
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
.|+..+. .++++-|||+|...++.+++..+..+. ++..++++-+..+ ++.|.
T Consensus 274 ~L~~~L~----~gknIcvfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~d----v~~W~------------------- 325 (824)
T PF02399_consen 274 ELLARLN----AGKNICVFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLED----VESWK------------------- 325 (824)
T ss_pred HHHHHHh----CCCcEEEEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCccc----ccccc-------------------
Confidence 4444444 378899999999999999999998874 8888888665552 23332
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCe--EEEc--cCC--CChhHHHhhhhcc
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARV--LINY--ELP--TKKETYIRRMTTC 144 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~--VI~~--d~P--~~~~~yi~R~GR~ 144 (159)
+.+|++-|.+ ..-|+++.+... |.-| ... .+..+..|.+||+
T Consensus 326 ------~~~VviYT~~----itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRv 373 (824)
T PF02399_consen 326 ------KYDVVIYTPV----ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRV 373 (824)
T ss_pred ------ceeEEEEece----EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHH
Confidence 6899999999 999999976543 4444 222 3455788999998
No 162
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.95 E-value=0.043 Score=51.57 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=66.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.+++|.++|..-++..++.+++. + +.+..++|..+..++.+++++++.| +
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~-i~v~~Lsg~~~~~e~~~~~~~l~~g-----------------------~ 554 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFP-VTIELLSRFRSAKEQNEILKELASG-----------------------K 554 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCC-cEEEEEeccccHHHHHHHHHHHHcC-----------------------C
Confidence 3589999999999999988877753 4 6888999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEc
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINY 128 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~ 128 (159)
++|+|+|.. ++.+.+.+.++.++|--
T Consensus 555 ~dIVIGTp~---ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 555 IDILIGTHK---LLQKDVKFKDLGLLIID 580 (926)
T ss_pred ceEEEchHH---HhhCCCCcccCCEEEee
Confidence 999999985 36677889999988753
No 163
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=95.93 E-value=0.036 Score=52.42 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=68.3
Q ss_pred EEEeCchHHHHHHHHHHhcC-----CCccEEEeecCCCHHHHHHHHHHHhccccccccc------ccccCCCCCCCCCCC
Q 031433 29 IVCCSSRDELDAVCSAVSNL-----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQK------VTEQSGDESETGKDE 97 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~-----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~------~~~~~~~~~~~~~~~ 97 (159)
+|=.++++.+-.+++.|-.. ..+...++|+..+...|..+.++...--.+..+. ....-+. .....
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~---~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQ---NSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHh---ccccc
Confidence 45567777777777777654 2256888999998888877655532211111100 0000000 11122
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+...|+|+|.+ .+-|+|+. .+++| --|.+..+.+||+||+.|.+
T Consensus 837 ~~~~i~v~Tqv----~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 837 NHLFIVLATPV----EEVGRDHD-YDWAI--ADPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred CCCeEEEEeee----EEEEeccc-CCeee--eccCcHHHHHHHhhcccccc
Confidence 36789999999 99999954 34433 34778999999999995544
No 164
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.89 E-value=0.086 Score=47.62 Aligned_cols=94 Identities=10% Similarity=-0.013 Sum_probs=66.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.+..++. ..+.+++|-+.|.+..+.+++.|+..-. ....+.|+.+ .|...+++|+..-
T Consensus 458 ~~~~~~~~~~--~~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~--~~~~l~~~f~~~~-------------- 518 (636)
T TIGR03117 458 VSLSTAAILR--KAQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKN--RLASAEQQFLALY-------------- 518 (636)
T ss_pred HHHHHHHHHH--HcCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCc--cHHHHHHHHHHhh--------------
Confidence 4444444443 2346888888899999999999977522 4456666543 4566889998830
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCC----------CCCCeEEEccCCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESA----------ISARVLINYELPT 132 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~----------~~v~~VI~~d~P~ 132 (159)
..+.-.||+.|+- +-+|+|+ ..+++||..-+|.
T Consensus 519 -----~~~~~~vL~gt~s----fweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 519 -----ANGIQPVLIAAGG----AWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred -----cCCCCcEEEeCCc----cccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 0115789999999 9999999 3478899888884
No 165
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.67 E-value=0.087 Score=46.25 Aligned_cols=122 Identities=13% Similarity=0.160 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHcc--CCCCCcEEEEeCchHHHHHHHHHHhcC--------CCccEEEeecCCCHHHHHHHHHHHhcccc
Q 031433 8 QETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNL--------ADISFSSLHSDLAETERTLILEEFRHTAM 77 (159)
Q Consensus 8 ~~~l~~ll~~l~~~--~~~~~k~iIF~ns~~~~~~l~~~L~~~--------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~ 77 (159)
.+.+...++..+.. .+...-++||-...+..+..++.+... |.+++..|| +.+..++ |+..
T Consensus 234 rDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~i---Fep~-- 304 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRI---FEPA-- 304 (699)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccc---cCCC--
Confidence 35555444433321 223577999999999999999888743 457888998 2222222 2221
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHh
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIR 139 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~ 139 (159)
+ ++.......+|+|+|.+ ++-.+.++++.+||.-++ |-+..+-.|
T Consensus 305 -----p--------~~~~~~~~RkvVvstni----aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~q 367 (699)
T KOG0925|consen 305 -----P--------EKRNGAYGRKVVVSTNI----AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQ 367 (699)
T ss_pred -----C--------cccCCCccceEEEEecc----hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHH
Confidence 0 12222336889999999 999999999999997654 345566789
Q ss_pred hhhcccC-CCCeEEEEE
Q 031433 140 RMTTCLA-AGTSFSDII 155 (159)
Q Consensus 140 R~GR~~~-~~g~~i~~v 155 (159)
|.||+|| ++|.+..+-
T Consensus 368 R~gragrt~pGkcfrLY 384 (699)
T KOG0925|consen 368 RAGRAGRTRPGKCFRLY 384 (699)
T ss_pred HhhhccCCCCCceEEee
Confidence 9999966 568887653
No 166
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.65 E-value=0.033 Score=45.39 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=39.1
Q ss_pred ceeEEEEecCCCCCCcCCCCCCC--------CCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAIS--------ARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~--------v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+..|+|.|++ .+-||.++. -++-|..++||+++..+|..||+-|.+
T Consensus 61 ~k~v~iis~A----gstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsn 114 (278)
T PF13871_consen 61 EKDVAIISDA----GSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSN 114 (278)
T ss_pred CceEEEEecc----cccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccc
Confidence 8899999999 999998874 235678899999999999999995543
No 167
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.35 E-value=0.067 Score=50.37 Aligned_cols=63 Identities=16% Similarity=0.281 Sum_probs=53.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC----C--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 95 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~----~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 95 (159)
..+++++++.++|..-+...++.|.+. + .+.+. +|+.|+.++++.++++|.+|
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~g-------------------- 180 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESG-------------------- 180 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcC--------------------
Confidence 455699999999999999998888865 2 12333 99999999999999999999
Q ss_pred CCCceeEEEEecC
Q 031433 96 DEHKSHMIVVTDA 108 (159)
Q Consensus 96 ~~~~~~vLV~Td~ 108 (159)
..+|||+|..
T Consensus 181 ---dfdIlitTs~ 190 (1187)
T COG1110 181 ---DFDILITTSQ 190 (1187)
T ss_pred ---CccEEEEeHH
Confidence 8999999986
No 168
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.058 Score=49.38 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=71.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+.|..++++...++ .++++||-++.......+.+.++..-+.++..+|+++++.+|...+.+.+.|
T Consensus 230 KTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G----------- 295 (730)
T COG1198 230 KTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG----------- 295 (730)
T ss_pred HHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-----------
Confidence 44666777776665 5799999999999999999999887336999999999999999999999998
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+.+|+|-|-. +-=.=+++..+||-
T Consensus 296 ------------~~~vVIGtRS-----AlF~Pf~~LGLIIv 319 (730)
T COG1198 296 ------------EARVVIGTRS-----ALFLPFKNLGLIIV 319 (730)
T ss_pred ------------CceEEEEech-----hhcCchhhccEEEE
Confidence 8899988764 22334556666553
No 169
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.27 E-value=0.29 Score=35.73 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCCC---ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEec--CCCCC
Q 031433 38 LDAVCSAVSNLAD---ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTD--ACLPL 112 (159)
Q Consensus 38 ~~~l~~~L~~~~~---i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td--~~~~~ 112 (159)
.+.+.+.+.+.+. -.....-+ ....+..+++++|++.. . .+ ..||+++. -
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~-~~~~~~~~~l~~f~~~~------------------~-~~-g~iL~~v~~G~---- 58 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEG-KDSGETEELLEKYSAAC------------------E-AR-GALLLAVARGK---- 58 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEEC-CCCchHHHHHHHHHHhc------------------C-CC-CEEEEEEeCCe----
Confidence 4555566655431 02222223 22334578899999851 0 00 24776663 3
Q ss_pred CcCCCCCCC--CCeEEEccCCC
Q 031433 113 LSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 113 ~~rGid~~~--v~~VI~~d~P~ 132 (159)
+++|+|+++ ++.||...+|.
T Consensus 59 ~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 59 VSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred eecceecCCCccEEEEEEecCC
Confidence 689999987 56798888873
No 170
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.23 E-value=0.12 Score=49.67 Aligned_cols=78 Identities=19% Similarity=0.109 Sum_probs=64.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC-C--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL-A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~-~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.+++|.|+|+.-+..+++.+++. + .+.+..++|..+..++.++++...++ .+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-----------------------~~ 704 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-----------------------KI 704 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-----------------------CC
Confidence 4689999999999999998888753 1 26788899999999999999999887 79
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+|+|+|.- ++...+.+.++.++|-
T Consensus 705 dIVVgTp~---lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 705 DILIGTHK---LLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CEEEECHH---HHhCCCCHhhCCEEEE
Confidence 99999964 2555677888888773
No 171
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.2 Score=44.07 Aligned_cols=90 Identities=14% Similarity=0.254 Sum_probs=61.3
Q ss_pred HHHHHHHHHcc-CCCCCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 11 LVELLHLVVAG-RRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 11 l~~ll~~l~~~-~~~~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
++-+|+.+... .....++||.++|++-+..+++.+...+ .+.+..++|+++...+...++ .+
T Consensus 84 ~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~---------- 150 (513)
T COG0513 84 LLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG---------- 150 (513)
T ss_pred HHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC----------
Confidence 44566654421 2222229999999999999988887642 367899999999887764444 34
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCC-CCCcCC-CCCCCCCeEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACL-PLLSSG-ESAISARVLIN 127 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~-~~~~rG-id~~~v~~VI~ 127 (159)
.+|+|+|+-++ -++.+| +|+..+.++|.
T Consensus 151 --------------~~ivVaTPGRllD~i~~~~l~l~~v~~lVl 180 (513)
T COG0513 151 --------------VDIVVATPGRLLDLIKRGKLDLSGVETLVL 180 (513)
T ss_pred --------------CCEEEECccHHHHHHHcCCcchhhcCEEEe
Confidence 78999997410 014555 88888888774
No 172
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.45 E-value=0.31 Score=44.16 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHH----HHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDEL----DAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVT 84 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~----~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~ 84 (159)
.+++.++..+.. -..+.++..-++|-=-+ +.+.++|...| +.+..+.|.+...+|.+++++..+|
T Consensus 296 KTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~-i~V~lLtG~~kgk~r~~~l~~l~~G--------- 364 (677)
T COG1200 296 KTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLG-IRVALLTGSLKGKARKEILEQLASG--------- 364 (677)
T ss_pred HHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC-CeEEEeecccchhHHHHHHHHHhCC---------
Confidence 345556654444 56688999999986444 46666666667 8999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhc
Q 031433 85 EQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTT 143 (159)
Q Consensus 85 ~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR 143 (159)
+++++|-|-+ |+...++|.+.-+||- +=-||.|-
T Consensus 365 --------------~~~ivVGTHA---LiQd~V~F~~LgLVIi--------DEQHRFGV 398 (677)
T COG1200 365 --------------EIDIVVGTHA---LIQDKVEFHNLGLVII--------DEQHRFGV 398 (677)
T ss_pred --------------CCCEEEEcch---hhhcceeecceeEEEE--------eccccccH
Confidence 8999999998 5788899999998874 23477774
No 173
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=94.35 E-value=0.19 Score=43.14 Aligned_cols=89 Identities=22% Similarity=0.262 Sum_probs=59.7
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
-++..+.. .....++||.|+|++-+..+++.++.. ..+.+..++|+.+...+...+ ..
T Consensus 61 pil~~l~~-~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l---~~-------------- 122 (460)
T PRK11776 61 GLLQKLDV-KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL---EH-------------- 122 (460)
T ss_pred HHHHHhhh-ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh---cC--------------
Confidence 34444432 333457999999999999988877753 237899999999887655433 33
Q ss_pred CCCCCCCCCCceeEEEEecCCCCC-Cc-CCCCCCCCCeEEEcc
Q 031433 89 DESETGKDEHKSHMIVVTDACLPL-LS-SGESAISARVLINYE 129 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~-~~-rGid~~~v~~VI~~d 129 (159)
..+|+|+|+-.+.. +. ..+++.++++||.-+
T Consensus 123 ----------~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 123 ----------GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred ----------CCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 57899999531100 33 357888999888544
No 174
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=94.34 E-value=0.2 Score=46.45 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC------C-----------CccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL------A-----------DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~------~-----------~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
.-+.++|||..+....+-+.+.|.+. | ....+-+.|..+..+|++.+++|....
T Consensus 717 ~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~--------- 787 (1387)
T KOG1016|consen 717 QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEP--------- 787 (1387)
T ss_pred ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCC---------
Confidence 34689999999999988888888765 1 124456778889999999999998852
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+-..-+|++|-. ..-|+++-..+-+|.||..|++.-=.|.+-|+
T Consensus 788 -----------~lsWlfllstra----g~lGinLIsanr~~ifda~wnpchdaqavcRv 831 (1387)
T KOG1016|consen 788 -----------GLSWLFLLSTRA----GSLGINLISANRCIIFDACWNPCHDAQAVCRV 831 (1387)
T ss_pred -----------Cceeeeeehhcc----ccccceeeccceEEEEEeecCccccchhhhhh
Confidence 113458899999 99999999999999999999998888877776
No 175
>PRK14701 reverse gyrase; Provisional
Probab=94.32 E-value=0.27 Score=48.96 Aligned_cols=63 Identities=16% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-----CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.+.+++|.++|+.-+..+++.|+... .+.+..+||+++.+++.+.++.+++|
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g----------------------- 177 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG----------------------- 177 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC-----------------------
Confidence 46799999999999999999888731 25788999999999999999999987
Q ss_pred ceeEEEEecCC
Q 031433 99 KSHMIVVTDAC 109 (159)
Q Consensus 99 ~~~vLV~Td~~ 109 (159)
..+|||+|+-.
T Consensus 178 ~~dILV~TPgr 188 (1638)
T PRK14701 178 DFDILVTTAQF 188 (1638)
T ss_pred CCCEEEECCch
Confidence 78999999874
No 176
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.25 E-value=0.48 Score=35.59 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=57.6
Q ss_pred HHHHHHHHHccC-CCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 11 LVELLHLVVAGR-RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 11 l~~ll~~l~~~~-~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
+..++..+.... ..+.++||.|+++.-+....+.++.. ..+.+..++|+.+..++...++ .
T Consensus 54 ~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------- 118 (203)
T cd00268 54 LIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----R----------- 118 (203)
T ss_pred HHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----C-----------
Confidence 344555554411 35678999999999998877766554 2378889999988766543332 2
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCC-C-cCCCCCCCCCeEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPL-L-SSGESAISARVLIN 127 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~-~-~rGid~~~v~~VI~ 127 (159)
...|+|+|.-.+.. + ..-.++++++++|.
T Consensus 119 ------------~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 119 ------------GPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred ------------CCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 57899999521000 1 22256777888774
No 177
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.59 E-value=0.38 Score=43.45 Aligned_cols=86 Identities=17% Similarity=0.153 Sum_probs=56.9
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+++.+.. .....++||.|+|++-+..+++.+... ..+.+..+||+.+.+.+...+ +.
T Consensus 64 ll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~~--------------- 124 (629)
T PRK11634 64 LLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---RQ--------------- 124 (629)
T ss_pred HHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---cC---------------
Confidence 3444433 334568999999999999888776643 237899999998776554433 33
Q ss_pred CCCCCCCCCceeEEEEecCCCC-CCcC-CCCCCCCCeEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLP-LLSS-GESAISARVLIN 127 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~-~~~r-Gid~~~v~~VI~ 127 (159)
..+|+|+|+-.+- .+.+ .+++.++.+||.
T Consensus 125 ---------~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 125 ---------GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred ---------CCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 4789999942100 0334 377888888774
No 178
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.50 E-value=0.67 Score=40.11 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
...+||.+++++-++...+.|...+ +.+..++++.+.+++..++.....+ +.++++
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g-i~~~~l~~~~~~~~~~~i~~~~~~~-----------------------~~~il~ 106 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG-IPATFLNSSQSKEQQKNVLTDLKDG-----------------------KIKLLY 106 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCCEEE
Confidence 4679999999999999999999887 7999999999999999999998887 788888
Q ss_pred EecC
Q 031433 105 VTDA 108 (159)
Q Consensus 105 ~Td~ 108 (159)
+|+-
T Consensus 107 ~TPe 110 (470)
T TIGR00614 107 VTPE 110 (470)
T ss_pred ECHH
Confidence 8875
No 179
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.79 E-value=0.035 Score=50.37 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=78.0
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE-E
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI-V 104 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL-V 104 (159)
.+++||++-..-.+.+...|...+ +....+.|+|+...|.+.+..|..++ ..++| +
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~-~~~~~~~g~~~~~~r~~s~~~~~~~~----------------------~~~vll~ 596 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKG-FVFLRYDGEMLMKIRTKSFTDFPCDP----------------------LVTALLM 596 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcc-cccchhhhhhHHHHHHhhhcccccCc----------------------cHHHHHH
Confidence 499999999999999999999777 68888899999999999999999762 55655 5
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 105 VTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
+.-+ ..-|+++..+++|+..|+=|++..--|-+-|+
T Consensus 597 Slka----g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~ 632 (674)
T KOG1001|consen 597 SLKA----GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRA 632 (674)
T ss_pred HHHH----hhhhhchhhhhHHHhhchhcChHHHHHHHHHH
Confidence 5666 88999999999999999999887776655555
No 180
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=92.52 E-value=0.26 Score=32.52 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHH
Confidence 4568999999998888899999999996 9999999874
No 181
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=92.17 E-value=1.3 Score=39.35 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..++.++-.+.. ...++|.++++.-++.-.+.|+..| +.+..+|++++..++..+++....+
T Consensus 41 KTl~y~lpal~~----~g~~lVisPl~sL~~dq~~~l~~~g-i~~~~~~s~~~~~~~~~~~~~l~~~ 102 (591)
T TIGR01389 41 KSLCYQVPALLL----KGLTVVISPLISLMKDQVDQLRAAG-VAAAYLNSTLSAKEQQDIEKALVNG 102 (591)
T ss_pred HhHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCC
Confidence 344444444432 4578999999999998889999987 7999999999999999999999887
No 182
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=92.14 E-value=0.64 Score=31.21 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+..+.. ..+.++++++|++-..+...+..|.+.|+-++..+.|++.
T Consensus 43 ~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 43 SEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 344444444332 2346899999999888888999999988546888888864
No 183
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.99 E-value=0.47 Score=45.86 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=51.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---Ccc---EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DIS---FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~---~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
.+.+++|.++|+.-+..+++.++... ++. +..+||+++..++...++.+.++
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~---------------------- 177 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG---------------------- 177 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC----------------------
Confidence 36899999999999999988887642 123 33589999999999999999887
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
..+|+|+|+-
T Consensus 178 -~~dIlV~Tp~ 187 (1171)
T TIGR01054 178 -DFDILITTTM 187 (1171)
T ss_pred -CCCEEEECHH
Confidence 6889999986
No 184
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.88 E-value=1.6 Score=38.92 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=73.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
...++|+.++--.--.+-+++.+.. +....+|.=-++..-.++-+-|.+| ...+|+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~-i~F~~i~EYssk~~vsRAR~lF~qg-----------------------r~~vlL 607 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEE-ISFVMINEYSSKSKVSRARELFFQG-----------------------RKSVLL 607 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhh-cchHHHhhhhhHhhhhHHHHHHHhc-----------------------CceEEE
Confidence 4678999999888888999998886 6777776544455555566778888 789999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccCCCChhHH---Hhhhhcc
Q 031433 105 VTDACLPLLSSGESAISARVLINYELPTKKETY---IRRMTTC 144 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~y---i~R~GR~ 144 (159)
-|+- .-.=|--++.+|+.||.|.+|.+|.-| +..++|+
T Consensus 608 yTER--~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~ 648 (698)
T KOG2340|consen 608 YTER--AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKT 648 (698)
T ss_pred Eehh--hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhh
Confidence 9986 112466889999999999999998766 5677777
No 185
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.60 E-value=1.2 Score=37.81 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=53.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++||.++|++-+..+.+.++.. ..+.+..++|+.+...+...+ .. ..+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~------------------------~~~ 125 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---SE------------------------NQD 125 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---cC------------------------CCC
Confidence 468999999999988877665542 237999999999887655433 22 478
Q ss_pred EEEEecCCC--CCCcCCCCCCCCCeEEEcc
Q 031433 102 MIVVTDACL--PLLSSGESAISARVLINYE 129 (159)
Q Consensus 102 vLV~Td~~~--~~~~rGid~~~v~~VI~~d 129 (159)
|+|+|+-.+ -+....+++.++++||.=+
T Consensus 126 IlV~Tp~rl~~~~~~~~~~~~~v~~lViDE 155 (434)
T PRK11192 126 IVVATPGRLLQYIKEENFDCRAVETLILDE 155 (434)
T ss_pred EEEEChHHHHHHHHcCCcCcccCCEEEEEC
Confidence 999996210 0023456788888877544
No 186
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.33 E-value=1.3 Score=39.63 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++||.++|++-+..+.+.+...+ .+.+..+||+.+.+.+...++ . ..+
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~-----------------------~~d 136 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----Q-----------------------GVD 136 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----C-----------------------CCC
Confidence 3689999999999998888776541 268999999998776554432 2 478
Q ss_pred EEEEecCCCC-CCcC--CCCCCCCCeEEE
Q 031433 102 MIVVTDACLP-LLSS--GESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~-~~~r--Gid~~~v~~VI~ 127 (159)
|+|+|.-.+- ++.+ .+++..++++|.
T Consensus 137 IiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 137 VIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred EEEECHHHHHHHHHhccccchhheeeeEe
Confidence 9999952100 0222 366777777664
No 187
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=91.16 E-value=0.46 Score=30.42 Aligned_cols=40 Identities=13% Similarity=0.254 Sum_probs=34.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+..++|++|++...+..++..|+..|+.++..+-|++.
T Consensus 47 ~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 47 LDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred cCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4567999999999889999999999998667888888764
No 188
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=91.12 E-value=0.56 Score=31.20 Aligned_cols=40 Identities=8% Similarity=0.071 Sum_probs=33.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++|++|++.......+..|...|+-++..+.|++.
T Consensus 53 ~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 53 PGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3567899999999888889999998888546888888873
No 189
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.11 E-value=2 Score=37.06 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=52.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.++||.|+|++-+..+.+.++.. -.+.+..++|+.+.+.... .+.. ..+|
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~------------------------~~~I 128 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLRG------------------------GVDV 128 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHcC------------------------CCcE
Confidence 47999999999999888877753 1268888999988766432 2333 5789
Q ss_pred EEEecCCCC--CCcCCCCCCCCCeEEEc
Q 031433 103 IVVTDACLP--LLSSGESAISARVLINY 128 (159)
Q Consensus 103 LV~Td~~~~--~~~rGid~~~v~~VI~~ 128 (159)
+|+|.-.+- +....+++..++++|.=
T Consensus 129 iV~TP~rL~~~~~~~~~~l~~v~~lViD 156 (456)
T PRK10590 129 LVATPGRLLDLEHQNAVKLDQVEILVLD 156 (456)
T ss_pred EEEChHHHHHHHHcCCcccccceEEEee
Confidence 999962100 02445678888887753
No 190
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=91.07 E-value=0.78 Score=31.49 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.+++|+||++-..+..++..|+..|+-++..+.|++
T Consensus 76 ~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 76 TPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 35789999999988888999999999853577778876
No 191
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.33 E-value=2.6 Score=35.83 Aligned_cols=78 Identities=8% Similarity=0.057 Sum_probs=52.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||.++|++-+..+.+.+... -++.+..++|+.+.+..... +.. ..+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~~------------------------~~~ 135 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LES------------------------GVD 135 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hcC------------------------CCC
Confidence 468999999999999887655432 23788999998876654433 333 478
Q ss_pred EEEEecCCCC-CC-cCCCCCCCCCeEEEcc
Q 031433 102 MIVVTDACLP-LL-SSGESAISARVLINYE 129 (159)
Q Consensus 102 vLV~Td~~~~-~~-~rGid~~~v~~VI~~d 129 (159)
|+|+|.-.+- ++ ...+++..+.++|.-+
T Consensus 136 IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 136 ILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 9999973110 01 2357788888887544
No 192
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=90.26 E-value=0.97 Score=30.29 Aligned_cols=39 Identities=8% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|+|++-......+..|...|+-++..|.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 456899999999877888888999888535788888764
No 193
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=90.21 E-value=0.83 Score=40.84 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.1
Q ss_pred EEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHH
Q 031433 28 MIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEE 71 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~ 71 (159)
.|||++|++-+-.+.+.|... ..+.+..|.|+|+....+++|++
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 899999999999999988764 34899999999999998888876
No 194
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=89.88 E-value=0.82 Score=30.04 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.++++++|+|++-..+...+..|...|+-++..+.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 45789999999999999999999999865677888876
No 195
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=89.74 E-value=0.58 Score=30.31 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=33.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.+++||||++...+..++..|...|+-.+..|.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 4567899999999999999999999998545888888874
No 196
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=89.63 E-value=0.7 Score=30.78 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=32.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
...+++++++|++-..+...+..|.+.|+-.+..+.|++.
T Consensus 51 ~~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 51 LVGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 3456899999999888889999999887546788999863
No 197
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=89.44 E-value=1.2 Score=30.84 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCc-hHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSS-RDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns-~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+..+ . ..+.+++++||++ -..+...+..|+..|+-++..+.|++.
T Consensus 65 ~~~~~~~~~~-~-~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 65 EEFAELLGSL-G-ISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred HHHHHHHHHc-C-CCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 4455555432 1 4457899999999 578888889999988545888888873
No 198
>PRK13766 Hef nuclease; Provisional
Probab=89.20 E-value=2.5 Score=38.80 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=53.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCc---cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i---~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.++.++||.|+++.-++...+.+++...+ .+..++|+.+..+|.+.++ +
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~----------------------------~ 107 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE----------------------------K 107 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh----------------------------C
Confidence 35689999999999998877777764223 7888999999888764432 3
Q ss_pred eeEEEEecCCC--CCCcCCCCCCCCCeEEEcc
Q 031433 100 SHMIVVTDACL--PLLSSGESAISARVLINYE 129 (159)
Q Consensus 100 ~~vLV~Td~~~--~~~~rGid~~~v~~VI~~d 129 (159)
..|+|+|.-.+ -++..-+++.++++||.-+
T Consensus 108 ~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDE 139 (773)
T PRK13766 108 AKVIVATPQVIENDLIAGRISLEDVSLLIFDE 139 (773)
T ss_pred CCEEEECHHHHHHHHHcCCCChhhCcEEEEEC
Confidence 56888885200 0023446677778777443
No 199
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=89.05 E-value=0.91 Score=30.32 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|+|.+-......+..|+..|+ .+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~-~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGY-DVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCc-eeEEeCCcHH
Confidence 4568999999998888999999999984 7888888874
No 200
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=88.84 E-value=3.8 Score=36.77 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
...+||.+++++-+....+.|+..| +.+..+++..+.+++..+++....+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~g-i~~~~~~s~~~~~~~~~~~~~~~~g 114 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANG-VAAACLNSTQTREQQLEVMAGCRTG 114 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcC-CcEEEEcCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999987 7999999999999999888888887
No 201
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.77 E-value=4.4 Score=35.00 Aligned_cols=77 Identities=8% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..++||.++|++-+..+.+.++.. -++.+..++|+.+..... +.+... ..+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~-----------------------~~~ 215 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR-----------------------FCD 215 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC-----------------------CCC
Confidence 368999999999999888877654 126888999988765433 344444 688
Q ss_pred EEEEecCCC-CCCc-CCCCCCCCCeEEE
Q 031433 102 MIVVTDACL-PLLS-SGESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~-~~~~-rGid~~~v~~VI~ 127 (159)
|+|+|.-.+ ++.. ..+.+..+++||.
T Consensus 216 Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 216 ILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999997421 1122 2456777887774
No 202
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=88.24 E-value=1.5 Score=30.97 Aligned_cols=39 Identities=8% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCCCCcEEEEeC-chHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~n-s~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.++++|||+ +-..+...+..|+..|+ ++..|.|++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~ 122 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYK 122 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHH
Confidence 456789999997 45667788888888885 8999999874
No 203
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=88.18 E-value=4.3 Score=39.34 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc--cccccccccccc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH--TAMKWNQKVTEQ 86 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~--~~~~~~~~~~~~ 86 (159)
..++.+|-.+.. +..+||.+++++-+..-...|...+ +.+..+.++++..++.++++++.. +
T Consensus 488 KSLcYQLPAL~~----~GiTLVISPLiSLmqDQV~~L~~~G-I~Aa~L~s~~s~~eq~~ilr~l~s~~g----------- 551 (1195)
T PLN03137 488 KSLTYQLPALIC----PGITLVISPLVSLIQDQIMNLLQAN-IPAASLSAGMEWAEQLEILQELSSEYS----------- 551 (1195)
T ss_pred HHHHHHHHHHHc----CCcEEEEeCHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHHHhcCC-----------
Confidence 344444443432 3679999999999886667777777 899999999999999999998876 5
Q ss_pred CCCCCCCCCCCCceeEEEEecC
Q 031433 87 SGDESETGKDEHKSHMIVVTDA 108 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~ 108 (159)
.+++|++|+-
T Consensus 552 ------------~~~ILyvTPE 561 (1195)
T PLN03137 552 ------------KYKLLYVTPE 561 (1195)
T ss_pred ------------CCCEEEEChH
Confidence 7899999985
No 204
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=88.13 E-value=0.94 Score=30.00 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=30.2
Q ss_pred CCCcEEEEeCc--hHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 24 PGLPMIVCCSS--RDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns--~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.++++|+|.+ +..+...+..|...|+-++..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 46799999999 444678888998888657888888874
No 205
>PTZ00110 helicase; Provisional
Probab=87.70 E-value=3 Score=36.94 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=52.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+..+||.|+|++-+..+.+.+...+ .+.+..++|+.+...... ..++ ..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---~l~~------------------------~~~ 255 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---ALRR------------------------GVE 255 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---HHHc------------------------CCC
Confidence 4679999999999998888877642 267888999887665433 3344 378
Q ss_pred EEEEecCCC-CCCcCC-CCCCCCCeEEEc
Q 031433 102 MIVVTDACL-PLLSSG-ESAISARVLINY 128 (159)
Q Consensus 102 vLV~Td~~~-~~~~rG-id~~~v~~VI~~ 128 (159)
|+|+|+-.+ -++.++ +++..+++||.=
T Consensus 256 IlVaTPgrL~d~l~~~~~~l~~v~~lViD 284 (545)
T PTZ00110 256 ILIACPGRLIDFLESNVTNLRRVTYLVLD 284 (545)
T ss_pred EEEECHHHHHHHHHcCCCChhhCcEEEee
Confidence 999995210 003333 667788877743
No 206
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=87.29 E-value=7.3 Score=27.87 Aligned_cols=94 Identities=10% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHH-HHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAET-ERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~-~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
...++||.|++++.++...+.+.+.. .+.+..+|++.+.. +....+ .+ .
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----------------------~ 95 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SN-----------------------Q 95 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HT-----------------------T
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cc-----------------------c
Confidence 44699999999999999988887753 25789999988854 222222 33 5
Q ss_pred eeEEEEecCCCCCC--cCCCCCCCCCeEEEccC----CCChhHHHhhhhcc
Q 031433 100 SHMIVVTDACLPLL--SSGESAISARVLINYEL----PTKKETYIRRMTTC 144 (159)
Q Consensus 100 ~~vLV~Td~~~~~~--~rGid~~~v~~VI~~d~----P~~~~~yi~R~GR~ 144 (159)
..|+|+|...+-.. ...+++..+++||.=+. .++....+..+.+.
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred ccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH
Confidence 88999997521111 22356777888775331 22334444554444
No 207
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=87.28 E-value=0.9 Score=30.49 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=31.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+++++||++-..+...+..|...|+-++..+.|++.
T Consensus 64 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 64 SKDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 346899999999888889999999998545777778763
No 208
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=87.28 E-value=4.1 Score=35.06 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=61.3
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.++-+++.|+. ++....++|.++|++-+..+++.+...| ++.+..+-|+|+..... +.-++
T Consensus 115 faLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~--~~L~k------------- 178 (476)
T KOG0330|consen 115 FALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQA--NQLSK------------- 178 (476)
T ss_pred hHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHH--HHhhc-------------
Confidence 34567777776 6666899999999999998888877652 27899999999865432 33333
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCC--C-cCCCCCCCCCeEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPL--L-SSGESAISARVLI 126 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~--~-~rGid~~~v~~VI 126 (159)
+++|||||+-++-- - .+|.....+++.|
T Consensus 179 ------------kPhilVaTPGrL~dhl~~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 179 ------------KPHILVATPGRLWDHLENTKGFSLEQLKFLV 209 (476)
T ss_pred ------------CCCEEEeCcHHHHHHHHhccCccHHHhHHHh
Confidence 47889999741000 0 4577766666654
No 209
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=87.22 E-value=2.5 Score=28.69 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=30.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~~ 61 (159)
++++++|||++-......+..|+..|+-+ +..+.|++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 45789999999877777889999998434 788999874
No 210
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.09 E-value=3.7 Score=39.56 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHh----cCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~----~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-..++++.|.|+|-=-++.=++.++ ..+ +++..|..-.+.++...++++..+|
T Consensus 640 V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fP-V~I~~LSRF~s~kE~~~il~~la~G---------------------- 696 (1139)
T COG1197 640 VMDGKQVAVLVPTTLLAQQHYETFKERFAGFP-VRIEVLSRFRSAKEQKEILKGLAEG---------------------- 696 (1139)
T ss_pred hcCCCeEEEEcccHHhHHHHHHHHHHHhcCCC-eeEEEecccCCHHHHHHHHHHHhcC----------------------
Confidence 4457999999999766665555554 446 8999999999999999999999999
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
++.|+|-|-- |++.++-+.+.-++|-
T Consensus 697 -~vDIvIGTHr---LL~kdv~FkdLGLlII 722 (1139)
T COG1197 697 -KVDIVIGTHR---LLSKDVKFKDLGLLII 722 (1139)
T ss_pred -CccEEEechH---hhCCCcEEecCCeEEE
Confidence 9999999986 5888899999998873
No 211
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=86.97 E-value=2.9 Score=37.00 Aligned_cols=97 Identities=11% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.....+||-++|++-+..+.+...+.+ .+.+.+++|+.+..... ++.++|
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g------------------------ 215 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG------------------------ 215 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC------------------------
Confidence 335779999999999999988887752 25699999999877654 444554
Q ss_pred eeEEEEecCCC-CCCcCC-CCCCCCCeEEEcc--------CCCChhHHHhhhhcccC
Q 031433 100 SHMIVVTDACL-PLLSSG-ESAISARVLINYE--------LPTKKETYIRRMTTCLA 146 (159)
Q Consensus 100 ~~vLV~Td~~~-~~~~rG-id~~~v~~VI~~d--------~P~~~~~yi~R~GR~~~ 146 (159)
+.|+|+|+-++ -++.+| +|+..+.++|.=+ +=..+...+++++|+-+
T Consensus 216 vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 216 VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88999996310 003445 7888888887422 33456667777776644
No 212
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=86.93 E-value=1.7 Score=30.21 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+++|++|++-..+...+..|+..|+-++..+.|++.
T Consensus 62 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 62 GKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 456889999999888889999999998656777888875
No 213
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=86.41 E-value=0.93 Score=31.67 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~ 61 (159)
.+.++++++|++-..+...+..|+..|+ -++..+.|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 4568999999998888899999999984 36889999873
No 214
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.91 E-value=4.3 Score=36.23 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=51.7
Q ss_pred CCcEEEEeCchHHHHHHH---HHHhc-CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVC---SAVSN-LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~---~~L~~-~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
+.=.+|.|+|++-+..+. +.|.+ +| +.++++||+++..+....|+ .| .
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~yg-l~~v~~ygGgsk~eQ~k~Lk---~g------------------------~ 347 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYG-LRVVAVYGGGSKWEQSKELK---EG------------------------A 347 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhcc-ceEEEeecCCcHHHHHHhhh---cC------------------------C
Confidence 344678899998887654 44522 35 89999999999998776665 43 7
Q ss_pred eEEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
.++|||+-++= .--.+.|+..|++.+.
T Consensus 348 EivVaTPgRlid~VkmKatn~~rvS~LV~ 376 (731)
T KOG0339|consen 348 EIVVATPGRLIDMVKMKATNLSRVSYLVL 376 (731)
T ss_pred eEEEechHHHHHHHHhhcccceeeeEEEE
Confidence 88999964100 0123778888887663
No 215
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=85.15 E-value=4.5 Score=37.32 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHH
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 66 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~ 66 (159)
-+|+.+.. .+..++|+.+++++-+....+.|++.+ .+.+..++|+.+.++|.
T Consensus 71 PiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~ 124 (742)
T TIGR03817 71 PVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERR 124 (742)
T ss_pred HHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHH
Confidence 34554443 345789999999999999998888752 36888999999987763
No 216
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=85.09 E-value=2.8 Score=27.90 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHH-----HhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSA-----VSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~-----L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.+.+..........+++|+||++.......+.. |...|+-++..+.|++.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 50 EDKLDEFLKELGKKIDKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHHHHHHHHTHGSTTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred ccccccccccccccccccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3444444554444345667899999655555555444 77777558888888864
No 217
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=85.08 E-value=0.96 Score=30.07 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.++++|||++-..+...+..|+..|+-++..+.|++.
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 456899999998777888889999988534778888763
No 218
>PLN02160 thiosulfate sulfurtransferase
Probab=85.00 E-value=2.8 Score=30.19 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++++|++|++-.+....+..|...|+-.+..+.|++
T Consensus 79 ~~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~ 116 (136)
T PLN02160 79 NPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY 116 (136)
T ss_pred CCCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH
Confidence 45689999999999999999999998854677788876
No 219
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=84.99 E-value=1.4 Score=29.51 Aligned_cols=37 Identities=8% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+++++++|.+-..+...+..|...|+-++..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 5789999998888888899999998646788999874
No 220
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=84.96 E-value=3.2 Score=30.88 Aligned_cols=38 Identities=5% Similarity=-0.039 Sum_probs=30.5
Q ss_pred CCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++++|+||++-. .....+..|...|+-++..+.|++
T Consensus 114 ~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~ 152 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT 152 (162)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH
Confidence 46789999999753 566778888888876788898986
No 221
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=84.61 E-value=3.1 Score=30.28 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
...++||+|.+...+...+..|+..|+.++..|.|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 4689999999988888899999998866899999987
No 222
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=83.86 E-value=1.9 Score=29.41 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCCCCcEEEEeCch--HHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~--~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
-.+.++++|+|++. ..+..++..|+..|+ .+..+.|++.
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~-~v~~l~GG~~ 101 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGF-PVKEMIGGLD 101 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCC-eEEEecCCHH
Confidence 34578999999975 367888899999985 7888998873
No 223
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=83.54 E-value=6.4 Score=39.22 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---------------CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---------------LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---------------~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+.++|+.+++++-+.++.+.|+. ...+.+...||+.+.++|.+.++ .
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~-------------- 98 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----N-------------- 98 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----C--------------
Confidence 47899999999999988887752 11378999999999999876433 2
Q ss_pred CCCCCCCCCceeEEEEecCCCCCC--cCC-CCCCCCCeEEEcc
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLL--SSG-ESAISARVLINYE 129 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~--~rG-id~~~v~~VI~~d 129 (159)
..+|||+|.-.+-++ .++ ..+.++++||-=+
T Consensus 99 ---------ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 99 ---------PPDILITTPESLYLMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred ---------CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEec
Confidence 578999997532211 222 3578889888544
No 224
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=83.51 E-value=3.9 Score=29.46 Aligned_cols=51 Identities=6% Similarity=-0.074 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCc---hHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSS---RDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns---~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+++..+- -.+..++||||++ -..+-.+.-.|+..|+-++..+.|++.
T Consensus 81 ~~~~~~~~~~G--I~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 81 AEFAAMFEAKG--IDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHHcC--CCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 45556665432 4457899999986 445566677777778656788888764
No 225
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=83.21 E-value=1.9 Score=28.51 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++||.+-......+..|...|+ .+..+.|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~-~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGW-EVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCC-EEEEecCcHH
Confidence 357899999998778888899988885 6777888873
No 226
>PRK09401 reverse gyrase; Reviewed
Probab=82.83 E-value=3.8 Score=39.87 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=47.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEe--ecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSL--HSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l--~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.+.+++|.++|+.-+..+++.++..+ .+.+..+ |++++..++....+.+.++
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~----------------------- 178 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG----------------------- 178 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC-----------------------
Confidence 46899999999999999999888752 1344444 4556678888888888887
Q ss_pred ceeEEEEecC
Q 031433 99 KSHMIVVTDA 108 (159)
Q Consensus 99 ~~~vLV~Td~ 108 (159)
..+|+|+|.-
T Consensus 179 ~~~IlV~Tp~ 188 (1176)
T PRK09401 179 DFDILVTTSQ 188 (1176)
T ss_pred CCCEEEECHH
Confidence 6899999963
No 227
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=82.52 E-value=12 Score=24.98 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=37.5
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHH
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERT 66 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~ 66 (159)
..++..+.. ....++++|+|+++..+++..+.+.... ...+..++++....+..
T Consensus 18 ~~~~~~~~~-~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 18 LLPILELLD-SLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE 73 (144)
T ss_pred HHHHHHHHh-cccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH
Confidence 333443443 2356899999999999998888877764 26788888876655544
No 228
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=82.44 E-value=1.9 Score=30.34 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=30.5
Q ss_pred CCCCcEEEEeC-chHHHHHHHHHHhcC------------CCccEEEeecCCC
Q 031433 23 RPGLPMIVCCS-SRDELDAVCSAVSNL------------ADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~n-s~~~~~~l~~~L~~~------------~~i~~~~l~~~~~ 61 (159)
.+.++++++|+ +-......+..|+.. |+.++..|.|++.
T Consensus 66 ~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 66 KKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 45688999997 777777788888874 6558999999874
No 229
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=81.10 E-value=4.1 Score=32.39 Aligned_cols=46 Identities=13% Similarity=-0.028 Sum_probs=37.4
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc-cCCCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC-LAAGT 149 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~-~~~~g 149 (159)
...|+|.=+. ++||+.+++....+..--|.+.++++|+ ||= |-++|
T Consensus 135 ~~~I~VGGn~----LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~g 181 (239)
T PF10593_consen 135 LNVIAVGGNK----LSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPG 181 (239)
T ss_pred ceEEEECCcc----ccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCcc
Confidence 3788899898 9999999999999999989977777774 776 44443
No 230
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=81.02 E-value=12 Score=34.95 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=44.4
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+|..+......+.+.+|.|+---.-+++.+.-+-.+.+.+..+||+ +++|....+.+...
T Consensus 206 ~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~ 265 (971)
T KOG0385|consen 206 LLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLP 265 (971)
T ss_pred HHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhcc
Confidence 3443333244568999999977666777766666677899999994 69999999987775
No 231
>PRK01415 hypothetical protein; Validated
Probab=80.77 E-value=4 Score=32.69 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=34.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++++||.+--.++..+..|++.|+-++..|.|++.
T Consensus 168 ~~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~ 207 (247)
T PRK01415 168 LLKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGIL 207 (247)
T ss_pred hcCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHH
Confidence 3457899999999999999999999999656889999874
No 232
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=80.54 E-value=8.7 Score=34.03 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC-C--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL-A--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~-~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
+.++|+|+-.+|+--+..=+..+++- + .-.+..++|+.++++|...+. +
T Consensus 56 ~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~----------------------------~ 107 (542)
T COG1111 56 WFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA----------------------------K 107 (542)
T ss_pred hcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh----------------------------h
Confidence 34458999999998877766666654 1 127889999999999986554 4
Q ss_pred eeEEEEecCCC--CCCcCCCCCCCCCeEEEcc
Q 031433 100 SHMIVVTDACL--PLLSSGESAISARVLINYE 129 (159)
Q Consensus 100 ~~vLV~Td~~~--~~~~rGid~~~v~~VI~~d 129 (159)
.+|+|+|+-.. -+.+-=+|..++.++|.-+
T Consensus 108 ~kVfvaTPQvveNDl~~Grid~~dv~~lifDE 139 (542)
T COG1111 108 KKVFVATPQVVENDLKAGRIDLDDVSLLIFDE 139 (542)
T ss_pred CCEEEeccHHHHhHHhcCccChHHceEEEech
Confidence 68899985300 0034448999999988533
No 233
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=80.29 E-value=8.1 Score=26.55 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.+.++.+. ....+++++||++-..+...+..|...|+ ......|++.
T Consensus 45 ~~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G~-~~v~~~GG~~ 95 (104)
T PRK10287 45 LKEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMGY-THAENAGGLK 95 (104)
T ss_pred HHHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcCC-CeEEecCCHH
Confidence 334444444332 23457899999998888888999998884 5445567653
No 234
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=79.97 E-value=15 Score=34.37 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=45.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.....+.||.|++----+++.+.=+-.+.+.+..+|| ++++|.++-..+.+++ ....
T Consensus 445 ~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~---------------------~~yd 501 (941)
T KOG0389|consen 445 IGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEPYYG--SQDERRELRERIKKNK---------------------DDYD 501 (941)
T ss_pred cCCCCCcEEEecchhHHHHHHHHHHhCCceEEEeccC--cHHHHHHHHHHHhccC---------------------CCcc
Confidence 4446788888888554445544433346579999999 5799999999888863 2688
Q ss_pred EEEEecC
Q 031433 102 MIVVTDA 108 (159)
Q Consensus 102 vLV~Td~ 108 (159)
|||+|=-
T Consensus 502 VllTTY~ 508 (941)
T KOG0389|consen 502 VLLTTYN 508 (941)
T ss_pred EEEEEee
Confidence 9988854
No 235
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=79.90 E-value=4.3 Score=27.47 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=31.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
...++++|+|.+-..+...+..|+..|+-++..+.|++.
T Consensus 56 ~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 56 DFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 456889999998888888899999998645788888873
No 236
>PRK05320 rhodanese superfamily protein; Provisional
Probab=79.48 E-value=5 Score=32.20 Aligned_cols=39 Identities=8% Similarity=0.173 Sum_probs=33.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~ 62 (159)
+++++++||.+-..++..+.+|++.|+-++..|.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 578999999999999999999999985358889999844
No 237
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=78.89 E-value=9.9 Score=25.91 Aligned_cols=50 Identities=6% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
...+.+.+..+. ....++++++|++-......+..|.+.|+-.+.. -|++
T Consensus 43 ~~~l~~~l~~~~--~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~ 92 (101)
T TIGR02981 43 LKEIKEHIATAV--PDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAEN-AGGI 92 (101)
T ss_pred HHHHHHHHHHhC--CCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEe-cCCH
Confidence 334444444332 2345788999999888888899999998533443 4664
No 238
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=76.43 E-value=2.1 Score=39.23 Aligned_cols=73 Identities=14% Similarity=0.266 Sum_probs=58.9
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
|+..+-+....+.+++||..-.+..+.+.+++...+ ...-+.|.....+|+.+++.|....
T Consensus 620 l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~--~~~r~dG~~~~~~rq~ai~~~n~~~----------------- 680 (696)
T KOG0383|consen 620 LLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG--KYERIDGPITGPERQAAIDRFNAPG----------------- 680 (696)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC--cceeccCCccchhhhhhccccCCCC-----------------
Confidence 333333335668999999999999999999999886 8888999999999999999999652
Q ss_pred CCCCCceeEEEEecC
Q 031433 94 GKDEHKSHMIVVTDA 108 (159)
Q Consensus 94 ~~~~~~~~vLV~Td~ 108 (159)
+.....|++|.+
T Consensus 681 ---~~~~cfllstra 692 (696)
T KOG0383|consen 681 ---SNQFCFLLSTRA 692 (696)
T ss_pred ---ccceEEEeeccc
Confidence 225778888876
No 239
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=76.40 E-value=8 Score=31.11 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=31.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++++|+||++-..+-.++..|...|+-++..+.|++
T Consensus 229 ~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~ 266 (281)
T PRK11493 229 SFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW 266 (281)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH
Confidence 45689999999999999999999888854678888875
No 240
>PRK13767 ATP-dependent helicase; Provisional
Probab=76.11 E-value=16 Score=34.36 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=51.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---------------CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---------------LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---------------~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+.++|+.+++++-+..+.+.|.. .+.+.+...||+.+..+|.+.++ +
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~---~--------------- 145 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK---K--------------- 145 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh---C---------------
Confidence 45799999999998877664431 11368899999999988765443 2
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcC--C--CCCCCCCeEEEcc
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSS--G--ESAISARVLINYE 129 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~r--G--id~~~v~~VI~~d 129 (159)
..+|+|+|+-.+-.+-. . -.+.++++||.-+
T Consensus 146 ---------~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE 180 (876)
T PRK13767 146 ---------PPHILITTPESLAILLNSPKFREKLRTVKWVIVDE 180 (876)
T ss_pred ---------CCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEec
Confidence 47899999742110111 1 1356788877533
No 241
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=75.42 E-value=18 Score=32.49 Aligned_cols=90 Identities=18% Similarity=0.183 Sum_probs=57.3
Q ss_pred HHHHHHHcc--CCCCCcEEEEeCchHHHHHHHHHH---hcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 13 ELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAV---SNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 13 ~ll~~l~~~--~~~~~k~iIF~ns~~~~~~l~~~L---~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
-+|+.|+.. .-+-.++||.|+|++-+-.+.+.. ...-.|.+...-|+++.......|+ +
T Consensus 238 PiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR---s------------- 301 (691)
T KOG0338|consen 238 PILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR---S------------- 301 (691)
T ss_pred HHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh---h-------------
Confidence 455555542 123489999999998776655544 4443478888889999888776654 3
Q ss_pred CCCCCCCCCCCceeEEEEecCCC---CCCcCCCCCCCCCeEEEcc
Q 031433 88 GDESETGKDEHKSHMIVVTDACL---PLLSSGESAISARVLINYE 129 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~---~~~~rGid~~~v~~VI~~d 129 (159)
.+.|+|+|+-++ =.-+-+.++.++.+.|.-+
T Consensus 302 -----------~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 302 -----------RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred -----------CCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 578999997410 0013355666666666544
No 242
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=75.02 E-value=19 Score=29.61 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHHHcc--CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHH
Q 031433 7 FQETLVELLHLVVAG--RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~--~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~ 64 (159)
+-..|-+|+..+... ...+.+++|.++..++.+.+..+|.-++ +...-+.|..-.++
T Consensus 97 KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~-~~~kr~sg~~l~~~ 155 (297)
T PF11496_consen 97 KFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKK-LNYKRYSGESLYDE 155 (297)
T ss_dssp HHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSS-SEEEESSS--S--S
T ss_pred hHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCC-eeEEecCCCCCcCc
Confidence 344555666655331 4456899999999999999999998876 67777777765554
No 243
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=73.99 E-value=18 Score=33.11 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHH
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 67 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~ 67 (159)
.+.-.+-.+.. ...+++++|.+.|..-+...++.+.. .| +.+..+.|++++++|..
T Consensus 130 Tla~~lp~~~~-al~G~~v~VvTptreLA~qdae~~~~l~~~lG-lsv~~i~gg~~~~~r~~ 189 (656)
T PRK12898 130 TLTATLPAGTA-ALAGLPVHVITVNDYLAERDAELMRPLYEALG-LTVGCVVEDQSPDERRA 189 (656)
T ss_pred HHHHHHHHHHH-hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCHHHHHH
Confidence 34444433333 44578999999999888777766664 36 89999999998876553
No 244
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=73.96 E-value=2.4 Score=39.76 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=36.4
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeE--------EEccCCCChhHHHhhhhcccCC
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVL--------INYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~V--------I~~d~P~~~~~yi~R~GR~~~~ 147 (159)
+-.|-|-+++ ++-||.++.=+-| |-.++||+.+.-||..||+-|.
T Consensus 857 eK~vAIISEA----aSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRS 909 (1300)
T KOG1513|consen 857 EKLVAIISEA----ASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRS 909 (1300)
T ss_pred cceeeeeehh----hccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccc
Confidence 6667777888 9999998765555 5578999999999999999443
No 245
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=73.51 E-value=4.5 Score=38.41 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=75.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC------CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGK 95 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~ 95 (159)
+.-++-++||-.--...-.|..+|... ....++.+|+-...++..++.+.-..+
T Consensus 640 ~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g-------------------- 699 (1282)
T KOG0921|consen 640 RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG-------------------- 699 (1282)
T ss_pred cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc--------------------
Confidence 555688999999999999999998875 123678889888888877777776666
Q ss_pred CCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC------------------CChhHHHhhhhcccC-CCCeE
Q 031433 96 DEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------------------TKKETYIRRMTTCLA-AGTSF 151 (159)
Q Consensus 96 ~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P------------------~~~~~yi~R~GR~~~-~~g~~ 151 (159)
..+++++|.. +.--+.+.++..||.-+.- .+....+||-||+++ +.|.+
T Consensus 700 ---v~kii~stni----aetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~ 767 (1282)
T KOG0921|consen 700 ---VTKIILSTNI----AETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFC 767 (1282)
T ss_pred ---ccccccccce----eeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccccc
Confidence 7888888888 7777777777666644421 134567899999854 33444
No 246
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=72.85 E-value=11 Score=31.01 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+++..+- -.+++++|+||++-..+-.++-.|+..|+-++..+.|++
T Consensus 255 ~el~~~~~~~g--i~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~ 304 (320)
T PLN02723 255 EELKKRFEQEG--ISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW 304 (320)
T ss_pred HHHHHHHHhcC--CCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH
Confidence 44445544321 345689999999988888888888888854577888875
No 247
>PTZ00424 helicase 45; Provisional
Probab=72.76 E-value=33 Score=28.47 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=50.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
...++||++++++-+..+.+.+...+ .+.+..+.|+....+. ++.+.. ..
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~------------------------~~ 147 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA------------------------GV 147 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC------------------------CC
Confidence 45789999999999988888776642 2466677777665432 344444 36
Q ss_pred eEEEEecCCCC--CCcCCCCCCCCCeEEEcc
Q 031433 101 HMIVVTDACLP--LLSSGESAISARVLINYE 129 (159)
Q Consensus 101 ~vLV~Td~~~~--~~~rGid~~~v~~VI~~d 129 (159)
+|+|+|.-.+- +..+.+.+..+++||.=+
T Consensus 148 ~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 148 HMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred CEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 78999963100 012345677888877433
No 248
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=72.74 E-value=6.9 Score=32.37 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=34.8
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~ 62 (159)
..+++++++||.+-..++..+.+|.+.|+-++..|.|++..
T Consensus 168 ~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 168 PLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 34678999999999999999999999985468899998754
No 249
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=72.08 E-value=52 Score=26.80 Aligned_cols=39 Identities=3% Similarity=0.022 Sum_probs=21.4
Q ss_pred cEEEEe---CchHHHHHHHHHHhcCCCc---cEEEeecCCCHHHH
Q 031433 27 PMIVCC---SSRDELDAVCSAVSNLADI---SFSSLHSDLAETER 65 (159)
Q Consensus 27 k~iIF~---ns~~~~~~l~~~L~~~~~i---~~~~l~~~~~~~~R 65 (159)
-++||+ ...+++.++.+.+.+.+.. .++.-.++++..+|
T Consensus 98 v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 98 VYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred eEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 344665 4556666666666655321 23333466666666
No 250
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=71.60 E-value=15 Score=32.20 Aligned_cols=79 Identities=18% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.++|++-+..+.+.++.. -.+.+..+.|+.+..+.. ...+. ..
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~------------------------~~ 247 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ------------------------GV 247 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC------------------------CC
Confidence 4568999999999988776665543 125677777776554432 33344 37
Q ss_pred eEEEEecCCC-CCC-cCCCCCCCCCeEEEcc
Q 031433 101 HMIVVTDACL-PLL-SSGESAISARVLINYE 129 (159)
Q Consensus 101 ~vLV~Td~~~-~~~-~rGid~~~v~~VI~~d 129 (159)
.|+|+|.-.+ -++ ..++++.++.+||.=+
T Consensus 248 ~IiV~TPgrL~~~l~~~~~~l~~v~~lViDE 278 (518)
T PLN00206 248 ELIVGTPGRLIDLLSKHDIELDNVSVLVLDE 278 (518)
T ss_pred CEEEECHHHHHHHHHcCCccchheeEEEeec
Confidence 8999994210 003 3357778888776433
No 251
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=71.42 E-value=13 Score=33.56 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=44.2
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.-+||-.+=..-.+.=.+.|+..| +.+..+++.++.++|..++++...|
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~G-i~A~~lnS~l~~~e~~~v~~~l~~g 106 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAAG-IRAAYLNSTLSREERQQVLNQLKSG 106 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHcC-ceeehhhcccCHHHHHHHHHHHhcC
Confidence 467888888888887788888888 8999999999999999999999998
No 252
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=70.80 E-value=49 Score=25.95 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=41.2
Q ss_pred CCCCcEEEEeCc------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 23 RPGLPMIVCCSS------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 23 ~~~~k~iIF~ns------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.+...+||+.|. ...++.|++.|+..|+ .+ .++.+++.++-.+.+++|.+
T Consensus 7 ~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF-~V-~~~~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 7 KRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGY-EV-EVKNNLTAEEILEELKEFAS 68 (243)
T ss_pred CCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCC-EE-EEeCCCCHHHHHHHHHHHHh
Confidence 355788888884 3568999999999984 55 56889999999999999985
No 253
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=70.45 E-value=8.9 Score=37.50 Aligned_cols=95 Identities=13% Similarity=-0.018 Sum_probs=67.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+...++|+|+.-....+-+...+.-++ +....--+ -++-...+..|++- -.
T Consensus 1218 k~~qekvIvfsqws~~ldV~e~~~~~N~-I~~~~~~~---t~d~~dc~~~fk~I------------------------~c 1269 (1394)
T KOG0298|consen 1218 KNEQEKVIVFSQWSVVLDVKELRYLMNL-IKKQLDGE---TEDFDDCIICFKSI------------------------DC 1269 (1394)
T ss_pred cCcCceEEEEEehHHHHHHHHHHHHhhh-hHhhhccC---Ccchhhhhhhcccc------------------------eE
Confidence 5566899999988888787777776665 44333222 22233445566552 22
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
.|+-+.- .+-|++.-++.||+..++=.++..=.|-+||+-|.|
T Consensus 1270 lll~~~~----~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiG 1312 (1394)
T KOG0298|consen 1270 LLLFVSK----GSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIG 1312 (1394)
T ss_pred EEEEecc----CcccccHHhhhhhheeccccCchHHHhhhhhhhhcc
Confidence 3344555 889999999999999999999999999999984433
No 254
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=69.93 E-value=26 Score=33.03 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=39.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHH----HHHHHHhcCC-CccEEEeecCCCHHHHH
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELD----AVCSAVSNLA-DISFSSLHSDLAETERT 66 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~----~l~~~L~~~~-~i~~~~l~~~~~~~~R~ 66 (159)
.++-+|+.++. .+..++|++-+++.-++ .+.+++...+ .+.+..++|+.++++|+
T Consensus 102 FllPIld~~l~--~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~ 161 (851)
T COG1205 102 FLLPILDHLLR--DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR 161 (851)
T ss_pred HHHHHHHHHhh--CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH
Confidence 34567776665 33348899999986554 5655665554 47899999999999987
No 255
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=69.70 E-value=12 Score=26.94 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeec
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 58 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~ 58 (159)
+.++.|+++... .+++++|+|...+.++.|-+.|=.... ..+.=|+
T Consensus 16 ~~~c~L~~k~~~---~g~rv~V~~~d~~~a~~lD~~LW~~~~-~sFlPH~ 61 (137)
T PF04364_consen 16 RFACRLAEKAYR---QGQRVLVLCPDEEQAEALDELLWTFSP-DSFLPHG 61 (137)
T ss_dssp HHHHHHHHHHHH---TT--EEEE-SSHHHHHHHHHHTTTSST-T----EE
T ss_pred HHHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHHHHCCCC-CCCCCCc
Confidence 566778887766 468999999999999999999877642 4444454
No 256
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=67.62 E-value=30 Score=27.21 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCCCcEEEEeCc-----------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 22 RRPGLPMIVCCSS-----------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 22 ~~~~~k~iIF~ns-----------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..+..-+||+.|. ...++.|.+.|++.|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF-~V-~~~~dlt~~em~~~l~~~~~~ 67 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGY-EV-HVKNNLTAEEMLEELKEFAER 67 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHhc
Confidence 3456788999986 3579999999999984 55 568899999999999999773
No 257
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=67.45 E-value=50 Score=24.70 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
...+++++.+.. ...+++++|.=...-....++++|.+.+ ..+...+... ++. .+..+
T Consensus 29 ~a~v~l~~~~~~-~l~gk~vlViG~G~~~G~~~a~~L~~~g-~~V~v~~r~~--~~l----~~~l~-------------- 86 (168)
T cd01080 29 AGILELLKRYGI-DLAGKKVVVVGRSNIVGKPLAALLLNRN-ATVTVCHSKT--KNL----KEHTK-------------- 86 (168)
T ss_pred HHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHhhCC-CEEEEEECCc--hhH----HHHHh--------------
Confidence 445566665543 4556777777665434556999999987 5777777653 222 22222
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCC---CCCCCCeEEEccCCCChh
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGE---SAISARVLINYELPTKKE 135 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGi---d~~~v~~VI~~d~P~~~~ 135 (159)
+..++|++-- ...=+ +++.-.++|+...|++.+
T Consensus 87 ----------~aDiVIsat~----~~~ii~~~~~~~~~viIDla~prdvd 122 (168)
T cd01080 87 ----------QADIVIVAVG----KPGLVKGDMVKPGAVVIDVGINRVPD 122 (168)
T ss_pred ----------hCCEEEEcCC----CCceecHHHccCCeEEEEccCCCccc
Confidence 4566665443 21112 234446899999999876
No 258
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=67.26 E-value=49 Score=24.57 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEE-eecCCCHHHHHHHHHHHhcc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSS-LHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~-l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+-..++++.... .+.++.++-.+.+.++.+.+.|++. +++.+.. .|+-+..++...+++..+..
T Consensus 32 ~dl~~~ll~~~~~---~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~ 98 (171)
T cd06533 32 SDLMPALLELAAQ---KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS 98 (171)
T ss_pred HHHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc
Confidence 3444556654432 3688888899999999999898876 4477776 67778777777777777775
No 259
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=67.24 E-value=14 Score=26.80 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeec
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 58 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~ 58 (159)
...++.|+++... .+++++|.|.+.+.++.|-+.|=.... ..+.=|+
T Consensus 15 ~~~~c~L~~ka~~---~g~rv~I~~~d~~~a~~lD~~LW~~~~-~sFlPH~ 61 (142)
T PRK05728 15 EALLCELAEKALR---AGWRVLVQCEDEEQAEALDEALWTFRD-ESFLPHG 61 (142)
T ss_pred HHHHHHHHHHHHH---CCCEEEEEcCCHHHHHHHHHHhcCCCC-CcCCCCC
Confidence 4556777776655 479999999999999999888866532 3333343
No 260
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=67.24 E-value=19 Score=29.84 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=33.8
Q ss_pred HHHHHHHccCCCCCcEEEEeC-chHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~n-s~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+..+.......++++|||. +-......+..|...|+ .+..+.|++.
T Consensus 62 ~~i~~~~~~~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~ 110 (311)
T TIGR03167 62 AHVEQWRAFADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYK 110 (311)
T ss_pred HHHHHHHhhcCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHH
Confidence 334444332333456999995 56678888999999985 8999999874
No 261
>PRK14873 primosome assembly protein PriA; Provisional
Probab=66.63 E-value=32 Score=31.53 Aligned_cols=49 Identities=8% Similarity=0.087 Sum_probs=30.5
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------CC------ChhHHHhhhhcccCC--CCeEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYEL------PT------KKETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------P~------~~~~yi~R~GR~~~~--~g~~i 152 (159)
+..|||.|....|.++ +++.+|+..|. |. ...-+.|-+||+++. +|.++
T Consensus 471 ~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~ 533 (665)
T PRK14873 471 GPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVV 533 (665)
T ss_pred CCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEE
Confidence 7999999994334466 35677655552 31 233456788888553 46555
No 262
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=66.33 E-value=14 Score=30.42 Aligned_cols=52 Identities=10% Similarity=-0.025 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.+++..+- ..++.++||||++-. .+..++..|+..|+-++..|.|++.
T Consensus 88 ~~~~~~~l~~~G--i~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~ 140 (320)
T PLN02723 88 EEAFAAAVSALG--IENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLP 140 (320)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHH
Confidence 455666666442 335679999997653 3457777888888656889999873
No 263
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=66.20 E-value=24 Score=32.85 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l 69 (159)
..+...+-.++. ...++++.|.+.|..-+...++.+... | +++..+.|+++.++|...+
T Consensus 82 KTLva~lpa~l~-aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LG-Lsv~~i~g~~~~~~r~~~y 144 (745)
T TIGR00963 82 KTLTATLPAYLN-ALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLG-LSVGLILSGMSPEERREAY 144 (745)
T ss_pred cHHHHHHHHHHH-HHhCCCEEEEcCCHHHHHHHHHHHHHHhccCC-CeEEEEeCCCCHHHHHHhc
Confidence 344444443322 334678999999998887777766653 5 8999999999988766443
No 264
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=65.19 E-value=14 Score=30.42 Aligned_cols=76 Identities=13% Similarity=0.224 Sum_probs=53.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.-.++|.|+|++-+-.+++...+. +.+++.+++|+++-..-.+.+. + -+
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk---~------------------------~P 162 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK---N------------------------CP 162 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh---C------------------------CC
Confidence 467899999999988877654432 4579999999998776555544 3 37
Q ss_pred eEEEEecCCCCCC--cCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLPLL--SSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~~~--~rGid~~~v~~VI~ 127 (159)
+|+|.|+-++-.+ .+.+++..+.+-+.
T Consensus 163 hivVgTPGrilALvr~k~l~lk~vkhFvl 191 (387)
T KOG0329|consen 163 HIVVGTPGRILALVRNRSLNLKNVKHFVL 191 (387)
T ss_pred eEEEcCcHHHHHHHHhccCchhhcceeeh
Confidence 8899998532223 44678888887554
No 265
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=65.05 E-value=17 Score=31.97 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHcc-----CCCCCcEEEEeCchHHHHHHHHHHhcC-----CCccEEEeecCCCHHHHHHHHHHHhccccc
Q 031433 9 ETLVELLHLVVAG-----RRPGLPMIVCCSSRDELDAVCSAVSNL-----ADISFSSLHSDLAETERTLILEEFRHTAMK 78 (159)
Q Consensus 9 ~~l~~ll~~l~~~-----~~~~~k~iIF~ns~~~~~~l~~~L~~~-----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~ 78 (159)
..++-+++.++.. ...+...+|.++|++-|..+++.+.+. -++.+.-+.++|+..... .+..+
T Consensus 72 AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d--- 144 (569)
T KOG0346|consen 72 AYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMD--- 144 (569)
T ss_pred HHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHcc---
Confidence 3455666666542 345678999999999999888877764 136677777788766533 45555
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCC
Q 031433 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLP 111 (159)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~ 111 (159)
.+.|+|+|+.|++
T Consensus 145 --------------------~pdIvV~TP~~ll 157 (569)
T KOG0346|consen 145 --------------------LPDIVVATPAKLL 157 (569)
T ss_pred --------------------CCCeEEeChHHHH
Confidence 7889999987644
No 266
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=64.64 E-value=52 Score=23.89 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+...++|+..-. ...++++.|+-.+....+-++..|.+.+ ..+...|.... .+++.-+
T Consensus 12 ~~a~~~ll~~~~~-~~~gk~v~VvGrs~~vG~pla~lL~~~g-atV~~~~~~t~------~l~~~v~------------- 70 (140)
T cd05212 12 AKAVKELLNKEGV-RLDGKKVLVVGRSGIVGAPLQCLLQRDG-ATVYSCDWKTI------QLQSKVH------------- 70 (140)
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEeCCCCc------CHHHHHh-------------
Confidence 4556777775433 6678999999999999999999999987 69999996542 1233333
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT 132 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~ 132 (159)
+.+|+|+.--.-| +-.+-.+..-.+||++++..
T Consensus 71 -----------~ADIVvsAtg~~~-~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 71 -----------DADVVVVGSPKPE-KVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred -----------hCCEEEEecCCCC-ccCHHHcCCCCEEEEcCCCc
Confidence 4677766543112 22344455557888888876
No 267
>PRK02362 ski2-like helicase; Provisional
Probab=64.00 E-value=19 Score=33.08 Aligned_cols=39 Identities=8% Similarity=0.042 Sum_probs=32.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAET 63 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~ 63 (159)
.+.++|+.+++++-+.+..+.++.. | +.+..++|+....
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g-~~v~~~tGd~~~~ 107 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELG-VRVGISTGDYDSR 107 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCC-CEEEEEeCCcCcc
Confidence 4679999999999999998888765 4 6888899987543
No 268
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=62.50 E-value=42 Score=31.90 Aligned_cols=45 Identities=7% Similarity=0.094 Sum_probs=36.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l 69 (159)
.++.+.|.+.|..-+...++.+... | +.+..++|+++.++|...+
T Consensus 122 ~G~~V~VvTpn~yLA~qd~e~m~~l~~~lG-Ltv~~i~gg~~~~~r~~~y 170 (896)
T PRK13104 122 SGRGVHIVTVNDYLAKRDSQWMKPIYEFLG-LTVGVIYPDMSHKEKQEAY 170 (896)
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCHHHHHHHh
Confidence 4678999999998888777777653 5 7999999999999886554
No 269
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=62.26 E-value=8.1 Score=25.66 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=29.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEE-EeecCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDL 60 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~-~l~~~~ 60 (159)
.+++++|+|.+-......++.|++.|+ ... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~-~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGF-TNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCC-ccccccCCcH
Confidence 468999999999999999999999984 555 666665
No 270
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=61.17 E-value=34 Score=29.21 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=47.8
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.++.+||+ +.|-.+....++.|++.| .+.+.+.||-++ +...++.+.|.++
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g----------------------- 318 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEG----------------------- 318 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccC-----------------------
Confidence 45677777 678888899999999875 367788899888 7766777777776
Q ss_pred ceeEEEEecC
Q 031433 99 KSHMIVVTDA 108 (159)
Q Consensus 99 ~~~vLV~Td~ 108 (159)
.+.-+++||.
T Consensus 319 ~i~~iv~TdT 328 (382)
T PRK06827 319 YFDRIIGTNL 328 (382)
T ss_pred CCCEEEEeCC
Confidence 6888899987
No 271
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=60.94 E-value=20 Score=28.82 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.++++.+- ..+++++||||++.. .+..++..|...|+-++..+.|++.
T Consensus 72 ~~~~~~~~~~~G--i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~ 124 (281)
T PRK11493 72 PETFAVAMRELG--VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLA 124 (281)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHH
Confidence 355556665442 345789999998754 3556677788888545778888863
No 272
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=60.44 E-value=24 Score=31.97 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=52.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...|+.|||.|++.=-..+..--+.+ +.++.++..+..+.-...|.+ . ....+
T Consensus 114 ~e~k~~iFa~TraeWm~ta~gC~~q~-ipvVT~Y~TLGeeal~hsl~E---t-----------------------~~~~i 166 (678)
T KOG1180|consen 114 KETKIAIFAETRAEWMITAQGCFSQN-IPVVTAYATLGEEALIHSLNE---T-----------------------ESTAI 166 (678)
T ss_pred CCCeEEEEecchHHHHHHHHHHHhcC-CeEEEEehhcChhhhhhhhcc---c-----------------------cceEE
Confidence 45679999999876555555555666 799999998887764444432 2 45556
Q ss_pred EEecCCCCCCcCC-CCCCCCCeEEEccC
Q 031433 104 VVTDACLPLLSSG-ESAISARVLINYEL 130 (159)
Q Consensus 104 V~Td~~~~~~~rG-id~~~v~~VI~~d~ 130 (159)
+|..--+|.+.-. -..+.+.++|++|.
T Consensus 167 ~T~~~LL~kl~~~l~~~~~vk~II~~d~ 194 (678)
T KOG1180|consen 167 FTDSELLPKLKAPLKQAKTVKHIIYFDP 194 (678)
T ss_pred EeCHHHHHHHHHHHhccCceeEEEEecC
Confidence 6554322322222 34578888888884
No 273
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.30 E-value=15 Score=30.79 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++++|++-......+..|+..|+-++..+.|++.
T Consensus 312 ~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~ 350 (355)
T PRK05597 312 SAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIE 350 (355)
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHH
Confidence 356889999999888999999999998535778889873
No 274
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.16 E-value=72 Score=24.06 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+-..++++... ..+.++.++-.+...++.+++.|++. +++.+...||-.++++..+++++-+..
T Consensus 35 dl~~~l~~~~~---~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s 99 (177)
T TIGR00696 35 DLMEELCQRAG---KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS 99 (177)
T ss_pred HHHHHHHHHHH---HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc
Confidence 33344555332 23468888888888889999999876 447777779999888877777777665
No 275
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=60.12 E-value=49 Score=29.39 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=30.6
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLA 61 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~ 61 (159)
+++........++..+||.|+|++-+-.....+++ ...+.+..+=|+-.
T Consensus 142 e~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~ 194 (543)
T KOG0342|consen 142 ELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNN 194 (543)
T ss_pred HHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCcc
Confidence 34433444366788999999999987655544443 21356666666644
No 276
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.38 E-value=26 Score=30.01 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=40.7
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHH
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERT 66 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~ 66 (159)
-+|+.+.+ .+.+.=++||++|++-+-.+++.+...| .+++.++.|+++.-...
T Consensus 64 Pil~rLse-dP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa 119 (442)
T KOG0340|consen 64 PILNRLSE-DPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQA 119 (442)
T ss_pred HHHHhhcc-CCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhh
Confidence 45565555 6667889999999999999999888653 26899999998755433
No 277
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.01 E-value=32 Score=30.78 Aligned_cols=93 Identities=16% Similarity=0.155 Sum_probs=57.2
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
-+++.+....-+--+|||.++++.-+..+++.+... .++.+..+.|.-+.+.-.+.|..--.+
T Consensus 203 PIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~-------------- 268 (620)
T KOG0350|consen 203 PIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE-------------- 268 (620)
T ss_pred HHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc--------------
Confidence 345544443344589999999999999999988875 225666666655544322222221111
Q ss_pred CCCCCCCCCceeEEEEecCCCC--C-CcCCCCCCCCCeEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLP--L-LSSGESAISARVLIN 127 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~--~-~~rGid~~~v~~VI~ 127 (159)
..+.|||+|+-++= + ...|+|+...++.|-
T Consensus 269 --------~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 269 --------CRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred --------cccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 26899999985210 0 145777887777553
No 278
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=58.83 E-value=79 Score=25.64 Aligned_cols=52 Identities=19% Similarity=0.343 Sum_probs=42.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+..+|+...+.+..+.|++.|.....+.+..+--|++..+....+.+....
T Consensus 29 ~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 29 RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHh
Confidence 4688999999999999999999987557999999999877766666665443
No 279
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=58.58 E-value=49 Score=26.94 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=40.5
Q ss_pred EEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEec
Q 031433 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTD 107 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td 107 (159)
-+|+|...++...|-+.+.-.. ....+|.--..+....+++....| -.|.+.+|
T Consensus 27 d~i~~EDTR~t~kLL~~~~I~~--~~~~~~~hn~~~~~~~l~~~l~~g------------------------~~valvSD 80 (276)
T TIGR00096 27 DLFAEEDTRTSKLLLHLGIIAT--PKAFHIDNEFQEKQNLLAAKLEIG------------------------NNIAVSSD 80 (276)
T ss_pred CEEEecCchhHHHHHHhcCCCC--ceEEEecccHhHHHHHHHHHHHcC------------------------CcEEEEec
Confidence 3899998888888777775442 455566544444555556666665 34889999
Q ss_pred CCCCCCc
Q 031433 108 ACLPLLS 114 (159)
Q Consensus 108 ~~~~~~~ 114 (159)
++.|..+
T Consensus 81 AG~P~IS 87 (276)
T TIGR00096 81 AGPPLIS 87 (276)
T ss_pred CCCCCcC
Confidence 9777654
No 280
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=57.71 E-value=16 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.231 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.++++++++|++-..+...+..|...|+-++..+.|++
T Consensus 55 ~~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 55 DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 45789999999988888889999998854677787764
No 281
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=56.64 E-value=40 Score=25.91 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeC-----chHHHHHHHHHHhcCCCccEEEeecC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~n-----s~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
..+++.+.++ +.. ....+|++||+| |.+....+.++..-.. +++..+-..
T Consensus 114 l~eklieyl~-v~~-~L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~-i~VL~IE~r 168 (188)
T PF09711_consen 114 LFEKLIEYLK-VFS-ELLKKKLLVFVNLRSYLTEEELQELYEYIKYNK-IKVLFIENR 168 (188)
T ss_dssp HHHHHHHHHH-HHH-H-TT--EEEEESGGGGS-HHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred HHHHHHHHHH-HHH-HHcCCCEEEEEchHHhcCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 3466777666 333 445699999999 6678889999988886 799998864
No 282
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=56.62 E-value=45 Score=20.61 Aligned_cols=45 Identities=13% Similarity=0.075 Sum_probs=28.8
Q ss_pred EEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.++.|.....+..+.+..... ..+..+.|.....+....+.++..
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~--~~~~~~~G~~~~~~~~~~l~~~~~ 46 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFG--GNVVALGGHLLKKEIIKLLKRLAK 46 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCC--EEEEEEeeeecHHHHHHHHHHHhc
Confidence 478888888888888776532 356666665544555555555543
No 283
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=56.60 E-value=20 Score=32.44 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHHHc---cCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHH
Q 031433 12 VELLHLVVA---GRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAET 63 (159)
Q Consensus 12 ~~ll~~l~~---~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~ 63 (159)
+-+|+.|.. ....+--|||..+|++-+-...+.|++-| .+.+..+-|+.+.+
T Consensus 125 vPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k 182 (758)
T KOG0343|consen 125 VPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK 182 (758)
T ss_pred HHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH
Confidence 334444443 24556889999999999999999998753 24667777776543
No 284
>PF13245 AAA_19: Part of AAA domain
Probab=56.13 E-value=35 Score=21.91 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcc-CCCCCcEEEEeCchHHHHHHHHHH
Q 031433 9 ETLVELLHLVVAG-RRPGLPMIVCCSSRDELDAVCSAV 45 (159)
Q Consensus 9 ~~l~~ll~~l~~~-~~~~~k~iIF~ns~~~~~~l~~~L 45 (159)
..+.+++..+... ...+++++|.+.++..++.+.+.|
T Consensus 25 ~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 25 TTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3455666656531 223789999999999999999999
No 285
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=55.60 E-value=56 Score=21.37 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHH
Q 031433 25 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERT 66 (159)
Q Consensus 25 ~~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~ 66 (159)
..+++||.. ...-|..+.++|.+.+ +....+.=+...+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-i~y~~idv~~~~~~~~ 53 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG-VDFGTFDILEDEEVRQ 53 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC-CCeEEEEcCCCHHHHH
Confidence 489999976 5667888899999987 6766665333444333
No 286
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=55.16 E-value=80 Score=24.36 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHH
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~ 64 (159)
.+...++.+.+ ...-+++-||+|. ..+.+.+.++..+ +.++=|||+.+.+.
T Consensus 39 ~~~a~~i~~~~---~~~~~~VgVf~~~--~~~~i~~~~~~~~-~d~vQLHG~e~~~~ 89 (207)
T PRK13958 39 ITQIKKLASAV---PNHIDKVCVVVNP--DLTTIEHILSNTS-INTIQLHGTESIDF 89 (207)
T ss_pred HHHHHHHHHhC---CCCCCEEEEEeCC--CHHHHHHHHHhCC-CCEEEECCCCCHHH
Confidence 44444444432 2224689999876 4566777777776 79999999988665
No 287
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=54.79 E-value=1.5e+02 Score=26.02 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=14.8
Q ss_pred hhHHHhhhhcccCCCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
...++-|+|+.-.++|....|-++
T Consensus 278 l~~LlERaG~~~~~~GSITai~tV 301 (458)
T TIGR01041 278 LATIYERAGRVKGKKGSITQMPIL 301 (458)
T ss_pred hHHHHHhcccCCCCCcceEEEEEE
Confidence 445667888874346666655544
No 288
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=54.74 E-value=86 Score=23.25 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEee-cCCCHHHHHHHHHHHhcc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH-SDLAETERTLILEEFRHT 75 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~-~~~~~~~R~~~l~~F~~~ 75 (159)
.+-+.++++... ..+.++.++-.+.+.++.+...|++. +++.+...| +-+++++..++++..+..
T Consensus 34 ~dl~~~l~~~~~---~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~ 100 (172)
T PF03808_consen 34 SDLFPDLLRRAE---QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS 100 (172)
T ss_pred HHHHHHHHHHHH---HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc
Confidence 344455555332 23578888888889999999999886 346777544 557888888888888876
No 289
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=54.71 E-value=32 Score=23.26 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=23.4
Q ss_pred CCCcEEEEeC-chH----HHHHHHHHHhc----CCCccEEEeecCCC
Q 031433 24 PGLPMIVCCS-SRD----ELDAVCSAVSN----LADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~n-s~~----~~~~l~~~L~~----~~~i~~~~l~~~~~ 61 (159)
..++++++|+ +.. .+..+.+.|.. .|+.++..+.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 4578999997 322 23344444432 26567899999864
No 290
>COG1204 Superfamily II helicase [General function prediction only]
Probab=54.55 E-value=46 Score=31.11 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHh---cCCCccEEEeecCCCHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS---NLADISFSSLHSDLAET 63 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~---~~~~i~~~~l~~~~~~~ 63 (159)
.+++.+|..+......+.|+|--|+.+.-+++.++.++ ..| +++...+|+++..
T Consensus 60 KTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~G-irV~~~TgD~~~~ 116 (766)
T COG1204 60 KTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELG-IRVGISTGDYDLD 116 (766)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcC-CEEEEecCCcccc
Confidence 44555444222212225788999999999999999888 556 8999999998744
No 291
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=54.34 E-value=73 Score=24.82 Aligned_cols=22 Identities=5% Similarity=-0.003 Sum_probs=11.7
Q ss_pred cEEEEeC-chHHHHHHHHHHhcC
Q 031433 27 PMIVCCS-SRDELDAVCSAVSNL 48 (159)
Q Consensus 27 k~iIF~n-s~~~~~~l~~~L~~~ 48 (159)
.+++.|. ..+++.++.+.+...
T Consensus 44 ~V~~~iGer~~Ev~~~~~~~~~~ 66 (215)
T PF00006_consen 44 VVYALIGERGREVTEFIEELKGE 66 (215)
T ss_dssp EEEEEESECHHHHHHHHHHHHHT
T ss_pred eeeeeccccchhHHHHHHHHhhc
Confidence 3555554 335556666665544
No 292
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=54.20 E-value=19 Score=30.56 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++++|++-..+...+..|++.|+-++..+.|++.
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~ 379 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVV 379 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHH
Confidence 456899999999888899999999998546888888863
No 293
>PRK00254 ski2-like helicase; Provisional
Probab=54.04 E-value=51 Score=30.23 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---CCCccEEEeecCCCHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAET 63 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---~~~i~~~~l~~~~~~~ 63 (159)
+.++|+.+++++-+++..+.+.. .+ +.+..++|+.+..
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g-~~v~~~~Gd~~~~ 108 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLG-LRVAMTTGDYDST 108 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcC-CEEEEEeCCCCCc
Confidence 57899999999999988877764 34 6889999988754
No 294
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=53.82 E-value=61 Score=25.19 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=41.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHH-------H-HHHHHHHhcccccccccccccCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE-------R-TLILEEFRHTAMKWNQKVTEQSGDESET 93 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~-------R-~~~l~~F~~~~~~~~~~~~~~~~~~~~~ 93 (159)
...+++.|..+.+.+.+..+.+.=.-+| ...+|||-+++-+ + ...+++...+
T Consensus 75 ~~Rd~~~icVVe~p~Dv~a~E~~~~f~G--~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~------------------ 134 (198)
T COG0353 75 ESRDKSQLCVVEEPKDVLALEKTGEFRG--LYHVLGGLLSPLDGIGPEDLNIDELLQRLAEG------------------ 134 (198)
T ss_pred cccCCceEEEEcchHHHHHHHHhcccCe--eEEEecCccCcccCCCcccccHHHHHHHHhcC------------------
Confidence 4445677888888888888765544444 7788887654332 2 3345555555
Q ss_pred CCCCCce-eEEEEecC
Q 031433 94 GKDEHKS-HMIVVTDA 108 (159)
Q Consensus 94 ~~~~~~~-~vLV~Td~ 108 (159)
.+ .|++||+.
T Consensus 135 -----~~~EvIlAtnp 145 (198)
T COG0353 135 -----SIKEVILATNP 145 (198)
T ss_pred -----CCceEEEecCC
Confidence 56 89999998
No 295
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=53.52 E-value=1.3e+02 Score=30.24 Aligned_cols=99 Identities=14% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCC---------------------CccEEEeecCCCHHHHHHHHHHHhccccccc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA---------------------DISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~---------------------~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~ 80 (159)
...+++.+||+++++.+..++..|-... -++..+=|.+++..+..-.-.-|..|
T Consensus 1356 a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g----- 1430 (1674)
T KOG0951|consen 1356 AGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG----- 1430 (1674)
T ss_pred hcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC-----
Confidence 3457999999999999988776543321 01112225556555555455556665
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEE-----Ecc------CCCChhHHHhhhhcccCCCC
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLI-----NYE------LPTKKETYIRRMTTCLAAGT 149 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI-----~~d------~P~~~~~yi~R~GR~~~~~g 149 (159)
.++++|...-|+. +-.. .+.|| -|| .+.......|.+|++.|.+.
T Consensus 1431 ------------------~i~v~v~s~~~~~-----~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1431 ------------------AIQVCVMSRDCYG-----TKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGK 1486 (1674)
T ss_pred ------------------cEEEEEEEccccc-----cccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcCCcc
Confidence 7888877654422 2111 23343 233 45568899999999966443
No 296
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=53.28 E-value=62 Score=30.42 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHh----cCCCccEEEeecCCC-HHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLA-ETERTL 67 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~----~~~~i~~~~l~~~~~-~~~R~~ 67 (159)
..+..++-.+.. ...++++.|.+.|..-+..-++.+. ..| +.+..+.|+++ .++|..
T Consensus 104 KTL~a~lp~~l~-al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lG-l~v~~i~g~~~~~~~r~~ 165 (790)
T PRK09200 104 KTLTATMPLYLN-ALEGKGVHLITVNDYLAKRDAEEMGQVYEFLG-LTVGLNFSDIDDASEKKA 165 (790)
T ss_pred chHHHHHHHHHH-HHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCcHHHHHH
Confidence 344444443322 3457899999999987776555554 346 89999999999 777764
No 297
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=52.74 E-value=30 Score=27.98 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADI 51 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i 51 (159)
-.++..+.+|+++.++++.+.+.|++.|++
T Consensus 185 Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 185 LKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred hCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 346799999999999999999999999753
No 298
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=52.22 E-value=36 Score=25.22 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeec
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS 58 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~ 58 (159)
+..++.|+++.+. .+.+++|.|.+.+.++.|=+.|=.... ..+.=|+
T Consensus 15 ~~~acrL~~Ka~~---~G~rv~I~~~d~~~~~~LD~~LWtf~~-~SFlPH~ 61 (154)
T PRK06646 15 LKSILLLIEKCYY---SDLKSVILTADADQQEMLNKNLWTYSR-KQFIPHG 61 (154)
T ss_pred HHHHHHHHHHHHH---cCCEEEEEcCCHHHHHHHHHHhcCCCC-CCCCCCC
Confidence 4566777777665 479999999999999999888866532 3344444
No 299
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=52.03 E-value=76 Score=30.51 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLI 68 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~ 68 (159)
+++++|.+.|+.-+...++.+... | +.+..+.|+++.+++...
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lG-LsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLG-LTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHH
Confidence 346888899999888888877754 4 789999999998887644
No 300
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=51.95 E-value=21 Score=24.92 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=29.2
Q ss_pred CCCcEEEEeCchHH---------HHHHHHHHhc--CCCccEEEeecCCC
Q 031433 24 PGLPMIVCCSSRDE---------LDAVCSAVSN--LADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~---------~~~l~~~L~~--~~~i~~~~l~~~~~ 61 (159)
..+++||||.+-.. +..+.+.|.. .++.++..|.|++.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 56899999987664 7788888887 23358999999863
No 301
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=50.86 E-value=45 Score=28.00 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=37.2
Q ss_pred CCCcEEEEeC-chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 24 PGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 24 ~~~k~iIF~n-s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
++++++|||. .-.....++..|...| +.+..+.|++..= |...++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G-~~v~~L~GG~~aw-r~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAG-IDVPRLEGGYKAY-RRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcC-CCcEEEcCCHHHH-HHhhHHHHhh
Confidence 5789999995 5567788899999988 4889999998543 4555555554
No 302
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=50.48 E-value=41 Score=32.28 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+.=+||-|+|+..+..+.+.++.. + +.+...+|+-...+. +.+.++|
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~-ir~v~vygg~~~~~q---iaelkRg 488 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLG-IRVVCVYGGSGISQQ---IAELKRG 488 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcC-ceEEEecCCccHHHH---HHHHhcC
Confidence 567899999999999888877764 5 789999998776654 5666675
No 303
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=50.11 E-value=53 Score=26.35 Aligned_cols=40 Identities=15% Similarity=0.414 Sum_probs=31.3
Q ss_pred EEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
|+||++--... +.+.++++.+.|+...++-.+.+++.|+.
T Consensus 37 iv~~~~l~D~k-------eiPEvDValVEGsV~~ee~lE~v~ElRek 76 (247)
T COG1941 37 IVYCPTLVDEK-------EIPEVDVALVEGSVCDEEELELVKELREK 76 (247)
T ss_pred EEEeecccccc-------cCCcccEEEEecccCcHHHHHHHHHHHHh
Confidence 89998754422 23447899999999999989999999984
No 304
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=50.03 E-value=1e+02 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=30.0
Q ss_pred CCCCCcEEEEeC---------chHHHHHHHHHHhcCCC--ccEEEeecC-CCHHHHH
Q 031433 22 RRPGLPMIVCCS---------SRDELDAVCSAVSNLAD--ISFSSLHSD-LAETERT 66 (159)
Q Consensus 22 ~~~~~k~iIF~n---------s~~~~~~l~~~L~~~~~--i~~~~l~~~-~~~~~R~ 66 (159)
..+.+.++|-|| .......|.+.|+..|+ ++++..+.+ |-.++|+
T Consensus 12 de~Ek~vvVv~~~~~~~~~~l~~~s~~~l~~eL~~~GYSylNIfs~~~~~~~V~eR~ 68 (146)
T PF04763_consen 12 DEKEKNVVVVCNHSWPGPESLPPESVSLLIEELEESGYSYLNIFSCSSESMCVKERQ 68 (146)
T ss_pred ccccCcEEEEEeCCcccccCCChHHHHHHHHHHhhcCCceEEEEEEcCCCcchHHHH
Confidence 456688888888 34567788888888753 566666643 5555543
No 305
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=49.93 E-value=89 Score=22.04 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=29.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..+++|.+++...+..+.+.+.... ......+++... ...++++..+
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 104 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESG 104 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcC
Confidence 5789999999988888888777653 123444444332 2334455554
No 306
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=49.91 E-value=24 Score=23.62 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=23.5
Q ss_pred EEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
||.+.....+..+++.|.... ..+....|-+
T Consensus 2 liIvE~ps~a~~i~~~l~~~~-~~v~~~~Ghl 32 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGGEE-YIVIATSGHL 32 (100)
T ss_dssp EEEESSHHHHHHHHHHSSTTT-EEEEEESSSS
T ss_pred EEEEeCHHHHHHHHHHcCCCC-EEEEEeCCcc
Confidence 788999999999999998443 4666666643
No 307
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=49.61 E-value=1.3e+02 Score=26.76 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=14.5
Q ss_pred hhHHHhhhhcccC--CCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLA--AGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~--~~g~~i~~v~~ 157 (159)
...++.|+|+... .+|....|-++
T Consensus 294 ~s~LlERag~~~~~~~~GSITal~~V 319 (502)
T PRK09281 294 HSRLLERAAKLSDELGGGSLTALPII 319 (502)
T ss_pred hHHHHHHhhhccCCCCCccEEEEEEE
Confidence 4456779998722 35665555443
No 308
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=48.89 E-value=1.2e+02 Score=27.16 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcc--CCCC--CcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHHHHHHHhcccccccc
Q 031433 10 TLVELLHLVVAG--RRPG--LPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLILEEFRHTAMKWNQ 81 (159)
Q Consensus 10 ~l~~ll~~l~~~--~~~~--~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~ 81 (159)
-++-+++.+... ..++ --.+|..+|++-+-.+.+.+.. ..++++..+-|+.+.++ -++.|++.
T Consensus 60 FllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~---Di~~fkee------ 130 (567)
T KOG0345|consen 60 FLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEE---DIKTFKEE------ 130 (567)
T ss_pred HHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHH---HHHHHHHh------
Confidence 344555555332 2222 3679999999988766554443 23478999999977665 35677776
Q ss_pred cccccCCCCCCCCCCCCceeEEEEecCCCC-CC---cCCCCCCCCCeEEEc
Q 031433 82 KVTEQSGDESETGKDEHKSHMIVVTDACLP-LL---SSGESAISARVLINY 128 (159)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~-~~---~rGid~~~v~~VI~~ 128 (159)
..+|||+|+-++- ++ ..++|+....++|.-
T Consensus 131 -----------------~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 131 -----------------GPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred -----------------CCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 6889999974210 02 336777788877753
No 309
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=47.79 E-value=1.9e+02 Score=25.29 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=12.7
Q ss_pred hhHHHhhhhcccCCCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
...+.-|+|+....+|....|-++
T Consensus 292 l~~L~ERAg~~~~~~GSITai~tV 315 (444)
T PRK08972 292 LPALVERAGNGGPGQGSITAFYTV 315 (444)
T ss_pred hHHHHHHhcCCCCCCceeeeEEEE
Confidence 345566777653334555544443
No 310
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=47.33 E-value=99 Score=29.29 Aligned_cols=59 Identities=19% Similarity=0.116 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHh----cCCCccEEEeecCCCHHHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~----~~~~i~~~~l~~~~~~~~R~~~l 69 (159)
..+...+-.++. ...++++-|.+.|..-+..-++.+. ..| +++..+.|+++.++|...+
T Consensus 107 KTLva~lpa~l~-aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LG-lsv~~i~~~~~~~er~~~y 169 (830)
T PRK12904 107 KTLVATLPAYLN-ALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLG-LSVGVILSGMSPEERREAY 169 (830)
T ss_pred cHHHHHHHHHHH-HHcCCCEEEEecCHHHHHHHHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHhc
Confidence 344444443322 3346778899998866655555444 446 8999999999999988774
No 311
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.30 E-value=89 Score=27.63 Aligned_cols=37 Identities=5% Similarity=0.124 Sum_probs=29.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~ 61 (159)
...+||..+|++-++.+.+.-++. ..+.+...+|+.+
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~ 191 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTD 191 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcc
Confidence 478999999999999998877664 2378888898833
No 312
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=47.01 E-value=1e+02 Score=23.12 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCc--------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSS--------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns--------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+.+.+.++.+.+ ....++++|+.|+ ...++.+.+.| | +. +..|+...+.-..++++.|...
T Consensus 62 ~~~~~~~~~l~~-~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---g-Ip-vl~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 62 PEYAEWLNELKK-QFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---G-IP-VLRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHHHH-HCCCCeEEEEECCCCcccCccHHHHHHHHHhh---C-Cc-EEEeCCCCCccHHHHHHHHhhc
Confidence 445555665554 3334589999998 45566666665 3 44 3456655556677888888753
No 313
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=45.72 E-value=90 Score=24.13 Aligned_cols=52 Identities=4% Similarity=-0.037 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCC-CHHHHHHHHHHHhcc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDL-AETERTLILEEFRHT 75 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~-~~~~R~~~l~~F~~~ 75 (159)
.+++++++++..... +.+.+.|++.|. +....+|... .........+.++.+
T Consensus 116 ~~~~~vL~~rg~~~r-~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~ 169 (240)
T PRK09189 116 APTARLLYLAGRPRA-PVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGA 169 (240)
T ss_pred CCCCcEEEeccCccc-chhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcC
Confidence 356888888876654 899999998862 2233334222 222223445666665
No 314
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=45.57 E-value=42 Score=31.70 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=26.1
Q ss_pred CCcEEEEe-CchHHHHHHHHHHhcCC--------------------------CccEEEeecCCCHH
Q 031433 25 GLPMIVCC-SSRDELDAVCSAVSNLA--------------------------DISFSSLHSDLAET 63 (159)
Q Consensus 25 ~~k~iIF~-ns~~~~~~l~~~L~~~~--------------------------~i~~~~l~~~~~~~ 63 (159)
..+.|||| +++.-++.+++.+.+.+ .+++..++|+.+.+
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~ 126 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN 126 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChH
Confidence 45677776 98888776666555432 25677888887654
No 315
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=45.29 E-value=46 Score=30.18 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCch-HHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~-~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.++|..+- ..++.++||||++- ..+-.++..|+..|+-++..|.|++.
T Consensus 66 ~~~l~~~l~~lG--I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~ 118 (610)
T PRK09629 66 TADLEQLFGELG--HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVL 118 (610)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHH
Confidence 456666666542 34578999999965 45668888898888657889999863
No 316
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=45.28 E-value=1.7e+02 Score=25.56 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=12.8
Q ss_pred hhHHHhhhhcccCCCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
....+.|+|+. .+|....|-++
T Consensus 285 l~~l~ERag~~--~~GSIT~~~tV 306 (433)
T PRK07594 285 LPRLLERTGMG--EKGSITAFYTV 306 (433)
T ss_pred hHHHHHhhcCC--CCcchheeeee
Confidence 45667788864 35555555443
No 317
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=44.50 E-value=13 Score=30.28 Aligned_cols=80 Identities=14% Similarity=0.294 Sum_probs=51.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
..+.-|+||||+...-.-...+.++++. -.+..+.|....+ -..+++ ...
T Consensus 59 dDp~mKaIVv~q~vpGt~~af~kIkekR-pDIl~ia~~~~ED--p~~i~~---------------------------~aD 108 (275)
T PF12683_consen 59 DDPDMKAIVVSQAVPGTAEAFRKIKEKR-PDILLIAGEPHED--PEVISS---------------------------AAD 108 (275)
T ss_dssp G-TTEEEEEEE-SS---HHHHHHHHHH--TTSEEEESS--S---HHHHHH---------------------------HSS
T ss_pred cCCCccEEEEeCCCcchHHHHHHHHhcC-CCeEEEcCCCcCC--HHHHhh---------------------------ccC
Confidence 4667899999999988888888888875 3778888765432 222332 467
Q ss_pred EEEEecCCCCCCcCCCCCC------CCCeEEEccCCCChh
Q 031433 102 MIVVTDACLPLLSSGESAI------SARVLINYELPTKKE 135 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~------~v~~VI~~d~P~~~~ 135 (159)
+.+.+|. ..||..++ ++...|||.+|+...
T Consensus 109 i~~~~D~----~~~G~~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 109 IVVNPDE----ISRGYTIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp EEEE--H----HHHHHHHHHHHHHTT-S-EEEEEETTGGG
T ss_pred eEeccch----hhccHHHHHHHHHcCCceEEEEechhhcc
Confidence 7888888 88887764 678899999999876
No 318
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=44.46 E-value=96 Score=20.86 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=24.8
Q ss_pred CCcEEEEeCch-----HHHHHHHHHHhcCC--CccEEEeecCCC
Q 031433 25 GLPMIVCCSSR-----DELDAVCSAVSNLA--DISFSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~-----~~~~~l~~~L~~~~--~i~~~~l~~~~~ 61 (159)
..++|++|.+. ..+..+.+.|++.| +..+..|.|++.
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~ 109 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIK 109 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhh
Confidence 46889999752 34556767776666 236777888763
No 319
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=44.44 E-value=1.9e+02 Score=25.47 Aligned_cols=24 Identities=13% Similarity=0.252 Sum_probs=14.5
Q ss_pred hhHHHhhhhcccCCCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
...+.-|+|+....+|....|-++
T Consensus 305 l~~l~ERag~~~~~~GSIT~i~tV 328 (455)
T PRK07960 305 LPALVERAGNGISGGGSITAFYTV 328 (455)
T ss_pred hhHHHHHHhcCCCCCeeeeeEEEE
Confidence 445678899864345655555444
No 320
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=44.31 E-value=1.7e+02 Score=23.63 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=40.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEee-cCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH-SDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~-~~~~~~~R~~~l~~F~~~ 75 (159)
++++-.+-.+...++..+..|+++ ++++++..| |=.++++.+.++++-...
T Consensus 108 ~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s 160 (253)
T COG1922 108 GKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAAS 160 (253)
T ss_pred CceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhc
Confidence 588888888888999999999887 336788887 666777767788877775
No 321
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=44.23 E-value=48 Score=29.27 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=42.9
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.=+|||.+-..-...=.+.|.... +.+..|++.|+..+|.+++-+....
T Consensus 62 gITIV~SPLiALIkDQiDHL~~LK-Vp~~SLNSKlSt~ER~ri~~DL~~e 110 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHLKRLK-VPCESLNSKLSTVERSRIMGDLAKE 110 (641)
T ss_pred CeEEEehHHHHHHHHHHHHHHhcC-CchhHhcchhhHHHHHHHHHHHHhc
Confidence 467999988888887778888876 7999999999999999999999875
No 322
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.08 E-value=99 Score=25.59 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-.++.+||. +.|-.+....++.|++.|. +.+.+-||=++... ++++.+.
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a----~~~l~~~---------------------- 268 (320)
T PRK02269 215 VKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPA----LDNIQKS---------------------- 268 (320)
T ss_pred cCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchH----HHHHHhC----------------------
Confidence 346788887 7789999999999998752 57788898888765 3444444
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+|+||.
T Consensus 269 -~i~~iv~Tdt 278 (320)
T PRK02269 269 -AIEKLVVLDT 278 (320)
T ss_pred -CCCEEEEeCC
Confidence 4777899997
No 323
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=43.79 E-value=2.3e+02 Score=24.97 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=10.9
Q ss_pred hHHHhhhhcccCCCCeEEEEEEe
Q 031433 135 ETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 135 ~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
..+.-|+|.. .+|....|-++
T Consensus 279 ~~L~ERag~~--~~GSITai~tV 299 (463)
T PRK09280 279 GQLQERITST--KKGSITSVQAV 299 (463)
T ss_pred HHHHHHhcCC--CCCceeEEEEE
Confidence 4455577753 35555555443
No 324
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=43.48 E-value=30 Score=27.00 Aligned_cols=28 Identities=14% Similarity=0.539 Sum_probs=21.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
=++++++++ .||.+|.....|+-++-|+
T Consensus 89 D~vVi~~PM-----------------~Nf~iPa~LK~yiD~i~~a 116 (202)
T COG1182 89 DKVVIAAPM-----------------YNFNIPAQLKAYIDHIAVA 116 (202)
T ss_pred CeEEEEecc-----------------cccCCCHHHHHHHHHHhcC
Confidence 578889988 7999998777766554444
No 325
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=42.95 E-value=1e+02 Score=25.73 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=47.3
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-.++++||. +.|-.+....++.|++.|. +.+.+-||=++.....++.+.+.++
T Consensus 216 v~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~---------------------- 273 (332)
T PRK00553 216 VKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKK---------------------- 273 (332)
T ss_pred CCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccC----------------------
Confidence 346778876 7788999999999998752 5677888888877666555555554
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+++||.
T Consensus 274 -~i~~iv~Tnt 283 (332)
T PRK00553 274 -LIDKLFVSNS 283 (332)
T ss_pred -CCCEEEEeCC
Confidence 5788899997
No 326
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=42.91 E-value=60 Score=29.46 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+++..+- -.+++++|+||++-..+-.++-.|+..|+-++..+.|++
T Consensus 209 ~el~~~~~~~G--i~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 209 QDMPEILRDLG--ITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred HHHHHHHHHcC--CCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 44555554321 345789999999988888888888888853577777765
No 327
>PHA03371 circ protein; Provisional
Probab=42.77 E-value=27 Score=27.75 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=24.0
Q ss_pred CcCCCCCCCCCeE-EEccCCCC-------------hhHHHhhhhcc
Q 031433 113 LSSGESAISARVL-INYELPTK-------------KETYIRRMTTC 144 (159)
Q Consensus 113 ~~rGid~~~v~~V-I~~d~P~~-------------~~~yi~R~GR~ 144 (159)
++|-+|+|+-+-+ |.-|.+.+ --.|+|.|||+
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRA 75 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRA 75 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehh
Confidence 6788899888877 75555544 44678999998
No 328
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=41.79 E-value=84 Score=24.69 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeC-----chHHHHHHHHHHhcCCCccEEEeecC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~n-----s~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
+.+++.+.++-+. .-..++++|||| |.+....+.++..... +.+..+-..
T Consensus 146 ~~eki~~~lki~~--~l~~kki~ifvNl~~YLt~eei~el~~~i~~~~-~~vlliE~~ 200 (216)
T TIGR01866 146 LLEKCLEILQIFK--ELTKKKLFIFINSGAFLTKDELAELQKFISYTK-LTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHH--HHhcCcEEEEEcHHHhCCHHHHHHHHHHHHHhc-ccEEEEecc
Confidence 4556666666332 334599999999 6678889999888776 678777654
No 329
>PRK07411 hypothetical protein; Validated
Probab=41.72 E-value=43 Score=28.46 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++++|.+-..+...+..|++.|+ +...+.|++.
T Consensus 340 ~~d~~IVvyC~~G~RS~~aa~~L~~~G~-~~~~l~GG~~ 377 (390)
T PRK07411 340 LNGHRLIAHCKMGGRSAKALGILKEAGI-EGTNVKGGIT 377 (390)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHHcCC-CeEEecchHH
Confidence 3468999999999999999999999984 7667777753
No 330
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=41.39 E-value=1.1e+02 Score=24.40 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
+-+.|..+|..+- ..++++|..-++.+.+..+.+++...+ |....+|-.
T Consensus 163 KG~~L~~fL~~~~---~~pk~IIfIDD~~~nl~sv~~a~k~~~-I~f~G~~Yt 211 (252)
T PF11019_consen 163 KGEVLKYFLDKIN---QSPKKIIFIDDNKENLKSVEKACKKSG-IDFIGFHYT 211 (252)
T ss_pred cHHHHHHHHHHcC---CCCCeEEEEeCCHHHHHHHHHHHhhCC-CcEEEEEEc
Confidence 3455555555432 233455555568889999999999977 888888854
No 331
>PRK01172 ski2-like helicase; Provisional
Probab=41.19 E-value=89 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=27.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---CCCccEEEeecCCCH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAE 62 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---~~~i~~~~l~~~~~~ 62 (159)
+.++|+.++++.-+.+.++.+.+ .| +.+...+|+...
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~ 104 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLG-MRVKISIGDYDD 104 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCC
Confidence 46888888999888888777664 24 577777787653
No 332
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=41.02 E-value=1.4e+02 Score=21.82 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=33.5
Q ss_pred cEEEEeCc-------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHH
Q 031433 27 PMIVCCSS-------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 27 k~iIF~ns-------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F 72 (159)
+++||+.| ...+..+.+.|+..+ +...-+.=+|..+.+.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~-V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFR-VKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHh
Confidence 46777765 788899999999987 7877777667777777655443
No 333
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=41.01 E-value=51 Score=28.88 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHH--HHHHHHhcCCCccEEEeecC-CCHH-------HHHHHHHHHhcccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELD--AVCSAVSNLADISFSSLHSD-LAET-------ERTLILEEFRHTAM 77 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~--~l~~~L~~~~~i~~~~l~~~-~~~~-------~R~~~l~~F~~~~~ 77 (159)
.+.|.++... .. +....++-+++|.++-+. .+++.|+..| +...++.-+ ++++ +-..+++.+++.
T Consensus 124 r~DL~eiv~~-a~-e~g~~hVqinTnGirlA~~~~~~~~l~~ag-~~tvYlsFDG~~e~~~~~~~~eIk~alen~r~~-- 198 (475)
T COG1964 124 RDDLIEIIKI-AR-EEGYDHVQLNTNGIRLAFDPEYVKKLREAG-VNTVYLSFDGVTPKTNWKNHWEIKQALENCRKA-- 198 (475)
T ss_pred hhhHHHHHHH-Hh-hcCccEEEEccCceeeccCHHHHHHHHhcC-CcEEEEecCCCCCCchhhHhhhhHHHHHHHHhc--
Confidence 4666676663 33 444578999999887775 7888898887 566666522 2211 222266666664
Q ss_pred cccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEc
Q 031433 78 KWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128 (159)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~ 128 (159)
.....|||.| +.||++-+.+.-+|.|
T Consensus 199 -------------------g~~svVLVpt------l~rgvNd~~lG~iirf 224 (475)
T COG1964 199 -------------------GLPSVVLVPT------LIRGVNDHELGAIIRF 224 (475)
T ss_pred -------------------CCCcEEEEee------hhcccChHHHHHHHHH
Confidence 1145788988 7888887776655544
No 334
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=40.55 E-value=97 Score=29.78 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=42.0
Q ss_pred cEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccc
Q 031433 27 PMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTA 76 (159)
Q Consensus 27 k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~ 76 (159)
=+||..+=..-.+.....|...+ |.+..|+++++..+|..+++...++.
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~-I~a~~L~s~q~~~~~~~i~q~l~~~~ 354 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKG-IPACFLSSIQTAAERLAILQKLANGN 354 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcC-cceeeccccccHHHHHHHHHHHhCCC
Confidence 45677777777888888887776 89999999999999999999999983
No 335
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=40.49 E-value=1.7e+02 Score=22.55 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=28.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 65 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R 65 (159)
.+++.||.|. ..+.+.+.+++.+ +.++=|||+.+.+.-
T Consensus 55 i~~VgVf~~~--~~~~i~~~~~~~~-~d~vQLHg~e~~~~~ 92 (210)
T PRK01222 55 VKVVGVFVNA--SDEEIDEIVETVP-LDLLQLHGDETPEFC 92 (210)
T ss_pred CCEEEEEeCC--CHHHHHHHHHhcC-CCEEEECCCCCHHHH
Confidence 5789999875 4556666666766 799999999887653
No 336
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=39.95 E-value=57 Score=27.59 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=30.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~~ 61 (159)
..+++++|.+-......++.|++.|+-. +..+.|++.
T Consensus 332 ~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 3489999999999999999999998522 688888874
No 337
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=39.36 E-value=2.7e+02 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.150 Sum_probs=15.5
Q ss_pred ChhHHHhhhhcccCCCCeEEEEEEe
Q 031433 133 KKETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 133 ~~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
....++-|+|+...++|....|-++
T Consensus 279 ~l~~LlERaG~~~~~~GSITai~~V 303 (460)
T PRK04196 279 DLATIYERAGRIKGKKGSITQIPIL 303 (460)
T ss_pred HhHHHHHHhhcCCCCCeeeEEEEEE
Confidence 3456677999875446666555543
No 338
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=39.32 E-value=70 Score=30.19 Aligned_cols=93 Identities=16% Similarity=0.271 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHccC----CCCCcEEEEeCchHHHH----HHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccc
Q 031433 9 ETLVELLHLVVAGR----RPGLPMIVCCSSRDELD----AVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWN 80 (159)
Q Consensus 9 ~~l~~ll~~l~~~~----~~~~k~iIF~ns~~~~~----~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~ 80 (159)
..++-.|..+++.. ..+-.||--.+=+.-.. .|-..++..| +.+.+-|||.++.+|++.. ..
T Consensus 53 AAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G-~~v~vRhGDT~~~er~r~~----~~----- 122 (814)
T COG1201 53 AAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG-IEVAVRHGDTPQSEKQKML----KN----- 122 (814)
T ss_pred HHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC-CccceecCCCChHHhhhcc----CC-----
Confidence 34556666666641 11244554455444444 4444455567 7999999999999976432 22
Q ss_pred ccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCC----CCCCCCCeEEEcc
Q 031433 81 QKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSG----ESAISARVLINYE 129 (159)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rG----id~~~v~~VI~~d 129 (159)
.++|||+|+-.++++--+ --+.+|++||-=+
T Consensus 123 ------------------PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 123 ------------------PPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred ------------------CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeeh
Confidence 689999999765544433 3457888887533
No 339
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=37.26 E-value=2.5e+02 Score=24.97 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=13.7
Q ss_pred hHHHhhhhcc-cC-CCCeEEEEEEe
Q 031433 135 ETYIRRMTTC-LA-AGTSFSDIILL 157 (159)
Q Consensus 135 ~~yi~R~GR~-~~-~~g~~i~~v~~ 157 (159)
..++.|+|+. .. .+|....|-++
T Consensus 295 srLlERag~~~~~~~~GSITal~~V 319 (497)
T TIGR03324 295 SRLLERSTHLNEELGGGSLTALPII 319 (497)
T ss_pred HHHHHhhhhccCCCCCcceeEEEEE
Confidence 4567799985 22 35666555443
No 340
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=36.03 E-value=1.7e+02 Score=23.96 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=37.9
Q ss_pred EEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecC
Q 031433 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDA 108 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~ 108 (159)
+|+|..-+....|-+.+.-.. ....+|.- +.+++...+..+... .-.|-+.+|+
T Consensus 33 ~iaaEDTR~t~~LL~~~~I~~--~~is~h~h-ne~~~~~~li~~l~~-----------------------g~~valVSDA 86 (275)
T COG0313 33 VIAAEDTRVTRKLLSHLGIKT--PLISYHEH-NEKEKLPKLIPLLKK-----------------------GKSVALVSDA 86 (275)
T ss_pred EEEEeccHHHHHHHHHhCCCC--ceecccCC-cHHHHHHHHHHHHhc-----------------------CCeEEEEecC
Confidence 788887777777766665442 46666654 444444444444443 3577888898
Q ss_pred CCCCCc
Q 031433 109 CLPLLS 114 (159)
Q Consensus 109 ~~~~~~ 114 (159)
++|..+
T Consensus 87 G~P~IS 92 (275)
T COG0313 87 GTPLIS 92 (275)
T ss_pred CCCccc
Confidence 777764
No 341
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=35.81 E-value=99 Score=22.80 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 49 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~ 49 (159)
.++.|+++... .+.|++|-|.+.+..+.|-+.|=...
T Consensus 17 ~~c~L~~k~~~---~G~rvlI~~~d~~q~e~LD~~LWt~~ 53 (144)
T COG2927 17 AACRLAEKAWR---SGWRVLIQCEDEAQAEALDEHLWTFS 53 (144)
T ss_pred HHHHHHHHHHH---cCCeEEEEeCCHHHHHHHHHhhhccc
Confidence 45555555443 57999999999999999988886653
No 342
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=35.02 E-value=1.6e+02 Score=26.81 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcc-----CCCCCcEEEEeCchHHHHHHHHHHhcC----CCc-cEEEeecCCCHHHHHHHHHHHhccccc
Q 031433 9 ETLVELLHLVVAG-----RRPGLPMIVCCSSRDELDAVCSAVSNL----ADI-SFSSLHSDLAETERTLILEEFRHTAMK 78 (159)
Q Consensus 9 ~~l~~ll~~l~~~-----~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i-~~~~l~~~~~~~~R~~~l~~F~~~~~~ 78 (159)
.+++-+++.|..- +..+.=++|.++|++-|..+++.+.+. .|| .+..+-|+-.+.| -.+.|+|
T Consensus 190 AYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSE----KARLRKG--- 262 (708)
T KOG0348|consen 190 AYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSE----KARLRKG--- 262 (708)
T ss_pred HHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccH----HHHHhcC---
Confidence 3444455544431 233566899999999999888877765 233 3333444433333 3456776
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCC---CCcCCCCCCCCCeEEE
Q 031433 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLP---LLSSGESAISARVLIN 127 (159)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~---~~~rGid~~~v~~VI~ 127 (159)
++|||.|+-++- .-...+++..+++||.
T Consensus 263 ---------------------iNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 263 ---------------------INILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred ---------------------ceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 999999974200 0133577778888874
No 343
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=34.80 E-value=1.8e+02 Score=27.39 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCch----HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSR----DELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~----~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
..+...+-..+. ...++++-|.+.+- ..++++...+...| +.+..+.++++.++|..+++
T Consensus 104 KTLvA~l~a~l~-AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LG-Lsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 104 KTLAGAIAAAGY-ALQGRRVHVITVNDYLARRDAEWMGPLYEALG-LTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HHHHHHHHHHHH-HHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCCCHHHHHHHHc
Confidence 455555554444 45678888888875 44566666676777 89999999999999987664
No 344
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=34.67 E-value=1.1e+02 Score=18.60 Aligned_cols=43 Identities=5% Similarity=0.060 Sum_probs=29.9
Q ss_pred EEEEe-CchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHH
Q 031433 28 MIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 71 (159)
Q Consensus 28 ~iIF~-ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~ 71 (159)
+.||. .....|..+.++|.+.+ +....+.=+...+.+.+..+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~-i~~~~i~i~~~~~~~~~~~~~ 45 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG-VDYEEIDVDGDPALREEMINR 45 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHH
Confidence 45665 45677888888999887 788887776666655554443
No 345
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=34.31 E-value=1.3e+02 Score=20.83 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=15.0
Q ss_pred CCcEEEEeCchHHHHHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSA 44 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~ 44 (159)
++|+++||.|-..+-.|+..
T Consensus 86 ~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 86 PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp TTSEEEE-SCSHHHHHHHHH
T ss_pred CCCEEEECCCChhHHHHHHH
Confidence 47999999999888766543
No 346
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=33.86 E-value=1.4e+02 Score=19.80 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=28.4
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHH
Q 031433 25 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTL 67 (159)
Q Consensus 25 ~~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~ 67 (159)
.++++||.. ..--|..+.++|.+.+ +....+.=+...+.|..
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~-i~~~~~di~~~~~~~~~ 58 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACG-VPFAYVNVLEDPEIRQG 58 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcC-CCEEEEECCCCHHHHHH
Confidence 489999964 4666788888898887 66665543334444444
No 347
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=33.39 E-value=2.2e+02 Score=23.37 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=44.1
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF---~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.++.+||. +.|-.+....++.|++.|. +.+.+.||=++... .+.+.+.
T Consensus 210 ~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a----~~~l~~~----------------------- 262 (301)
T PRK07199 210 AGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDA----YSALAAA----------------------- 262 (301)
T ss_pred CCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHH----HHHHHhC-----------------------
Confidence 46777776 7788999999999999862 57888898777654 4445444
Q ss_pred ceeEEEEecC
Q 031433 99 KSHMIVVTDA 108 (159)
Q Consensus 99 ~~~vLV~Td~ 108 (159)
.++-+++||.
T Consensus 263 ~i~~iv~Tdt 272 (301)
T PRK07199 263 GIARVVSTDT 272 (301)
T ss_pred CCCEEEEeCC
Confidence 4777899997
No 348
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=32.38 E-value=1.9e+02 Score=27.75 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 67 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~ 67 (159)
..|...|-.++. ...++.+.|.+.+..-+...++++.. .| +++..+.++++..+|.+
T Consensus 108 KTL~a~lp~~l~-al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lG-lsv~~i~~~~~~~~r~~ 168 (908)
T PRK13107 108 KTLTATLPAYLN-ALTGKGVHVITVNDYLARRDAENNRPLFEFLG-LTVGINVAGLGQQEKKA 168 (908)
T ss_pred chHHHHHHHHHH-HhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHh
Confidence 344444443333 44567899999988777666665554 46 89999999999876543
No 349
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=32.30 E-value=94 Score=23.53 Aligned_cols=53 Identities=6% Similarity=-0.011 Sum_probs=35.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
...++++++++.... -+.+.+.|++.|. +.-..+|.......+....+.|..+
T Consensus 114 ~~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~ 167 (231)
T PF02602_consen 114 QLRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRG 167 (231)
T ss_dssp CCTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHT
T ss_pred hCCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcC
Confidence 344577888776655 5678899988762 2223333336777888888889887
No 350
>PLN02743 nicotinamidase
Probab=32.27 E-value=1.6e+02 Score=23.31 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=49.0
Q ss_pred HHHHHHhcCCCccEEEeecCCCHHHH----HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcC
Q 031433 40 AVCSAVSNLADISFSSLHSDLAETER----TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSS 115 (159)
Q Consensus 40 ~l~~~L~~~~~i~~~~l~~~~~~~~R----~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~r 115 (159)
.+..+|++.| +....+.|-++.--= ..+.+.+..|=. -+..+|.|.+|+| ++.
T Consensus 141 ~L~~~Lr~~g-I~~liv~Gv~T~~CV~~~~sTardA~~~Gy~-------------------~~~~~V~Vv~DA~---at~ 197 (239)
T PLN02743 141 VFVDWVNNNK-IKVILVVGICTDICVLDFVASALSARNHGIL-------------------PPLEDVVVYSRGC---ATY 197 (239)
T ss_pred HHHHHHHHCC-CCEEEEEEeCcchhccChHHHHHHHHHcCCC-------------------CCCceEEEeCCcc---ccC
Confidence 3567888887 788888887665544 245555666400 0012799999985 433
Q ss_pred CCCCCCCCeEEEccCCCChhHHHhhhhcc--cCCCCeEEEEE
Q 031433 116 GESAISARVLINYELPTKKETYIRRMTTC--LAAGTSFSDII 155 (159)
Q Consensus 116 Gid~~~v~~VI~~d~P~~~~~yi~R~GR~--~~~~g~~i~~v 155 (159)
..+..... .+....++ ..+++|+++=. ..++..+++-+
T Consensus 198 d~~~h~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~ 237 (239)
T PLN02743 198 DLPLHVAK-TIKGALAH-PQELMHHMGLYMAKGRGAKVVSKV 237 (239)
T ss_pred Chhhhhhh-hhccccCC-CHHHHHHHHHHHHHhCCcEeeeee
Confidence 22221110 11111223 55677888765 34455555544
No 351
>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]
Probab=32.25 E-value=83 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~ 48 (159)
+.|.+.-+.+.. ..++-.+..||||-.+++.|+-.|.+.
T Consensus 86 d~lv~cA~~l~s-tlPeLsvc~F~NSGSEANDLALRLAR~ 124 (452)
T KOG1403|consen 86 DELVQCARTLTS-TLPELSVCFFVNSGSEANDLALRLARN 124 (452)
T ss_pred HHHHHHHHHHhh-cCCCceEEEEecCCchhhHHHHHHHHh
Confidence 456666677776 777799999999999999999988865
No 352
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=31.60 E-value=1.3e+02 Score=22.22 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=27.5
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA 49 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~ 49 (159)
.|.++++.-++ ...++||-.+|+-.+++++++|+..+
T Consensus 21 vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 21 VLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp HHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred ccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcCC
Confidence 35566665544 36899999999999999999998764
No 353
>PTZ00062 glutaredoxin; Provisional
Probab=31.05 E-value=2.5e+02 Score=21.70 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=35.8
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHH
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTL 67 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~ 67 (159)
.+.+.++.+.. .++++||.. +..-|..+.+.|++.+ +....+.=..+.+.|..
T Consensus 101 ~~~~~v~~li~----~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~-i~y~~~DI~~d~~~~~~ 159 (204)
T PTZ00062 101 DTVEKIERLIR----NHKILLFMKGSKTFPFCRFSNAVVNMLNSSG-VKYETYNIFEDPDLREE 159 (204)
T ss_pred HHHHHHHHHHh----cCCEEEEEccCCCCCCChhHHHHHHHHHHcC-CCEEEEEcCCCHHHHHH
Confidence 34445555554 589999987 4677889999999987 67666654444544444
No 354
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=30.98 E-value=1.8e+02 Score=27.96 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCch----HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSR----DELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~----~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
..+...|..++. ...++++-|.+.+. ..++++...+...| +.+..+.+++++++|..++.
T Consensus 108 KTLvA~l~a~l~-al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG-l~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 108 KTLVGTLAVYLN-ALSGKGVHVVTVNDYLARRDANWMRPLYEFLG-LSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred ChHHHHHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHHHhcccC-CEEEEECCCCCHHHHHHHhc
Confidence 445555554443 45678888888875 44566666777777 89999999999999997766
No 355
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=30.95 E-value=1.4e+02 Score=24.42 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=46.3
Q ss_pred cHHHHHHHHHHHHccC-CCCCcEEEEeC-chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 7 FQETLVELLHLVVAGR-RPGLPMIVCCS-SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~-~~~~k~iIF~n-s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
+++++...++.+.... .+..++.|=|+ .+++.+.+++++++.. -+...|+| +.++-.++-+.||=
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~-pkllGLTG--T~eqvk~vak~yRV 224 (280)
T KOG2792|consen 158 ELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFH-PKLLGLTG--TTEQVKQVAKKYRV 224 (280)
T ss_pred HHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcC-hhhhcccC--CHHHHHHHHHHhEE
Confidence 4677777777665421 22346777777 5788999999999986 48999999 56666677777654
No 356
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=30.85 E-value=3.2e+02 Score=26.68 Aligned_cols=49 Identities=14% Similarity=0.015 Sum_probs=29.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHh
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR 73 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~ 73 (159)
....++||.|+..-.-++..+.-+-.+.+.+..+|| +..+|....+.+.
T Consensus 217 ~~~gp~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G--~~~eR~~~~~~~~ 265 (1033)
T PLN03142 217 GITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHG--NPEERAHQREELL 265 (1033)
T ss_pred CCCCCEEEEeChHHHHHHHHHHHHHCCCCceEEEeC--CHHHHHHHHHHHh
Confidence 345789999997554444444333334467888888 4556666555543
No 357
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=30.59 E-value=2.8e+02 Score=23.12 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=25.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
.+++++|+... ..+..+++.|.+.| +.+..+...
T Consensus 270 ~g~~v~i~~~~-~~~~~l~~~L~elG-~~v~~v~~~ 303 (398)
T PF00148_consen 270 GGKRVAIYGDP-DRALGLARFLEELG-MEVVAVGCD 303 (398)
T ss_dssp TT-EEEEESSH-HHHHHHHHHHHHTT--EEEEEEES
T ss_pred cCceEEEEcCc-hhHHHHHHHHHHcC-CeEEEEEEc
Confidence 36899998887 88899999999888 566655433
No 358
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=30.01 E-value=2.3e+02 Score=20.90 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=26.4
Q ss_pred CcCCCCCCCCCeEEEccC----CCChhHHHhhhhcc
Q 031433 113 LSSGESAISARVLINYEL----PTKKETYIRRMTTC 144 (159)
Q Consensus 113 ~~rGid~~~v~~VI~~d~----P~~~~~yi~R~GR~ 144 (159)
.+|.=++...++||.-.. |.+...+.|..|=.
T Consensus 104 ~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgip 139 (163)
T cd05796 104 FARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLP 139 (163)
T ss_pred cccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCC
Confidence 788888888999996663 67888899999965
No 359
>PRK06936 type III secretion system ATPase; Provisional
Probab=29.66 E-value=3.8e+02 Score=23.40 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=11.6
Q ss_pred hHHHhhhhcccCCCCeEEEEEEe
Q 031433 135 ETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 135 ~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
..+.-|+|+. .+|....|-++
T Consensus 293 ~~l~ERaG~~--~~GSIT~i~tV 313 (439)
T PRK06936 293 PRLMERAGQS--DKGSITALYTV 313 (439)
T ss_pred HHHHHhhccC--CCcceeeeEEE
Confidence 3555678864 35555555443
No 360
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=29.54 E-value=2.3e+02 Score=23.50 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=44.2
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-.++.+||. +.|-.+....++.|++.| .+.+.+-||=++... .+.+.+.
T Consensus 216 V~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a----~~~l~~s---------------------- 269 (323)
T PRK02458 216 VAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGA----AEVLENA---------------------- 269 (323)
T ss_pred cCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchH----HHHHhhC----------------------
Confidence 346777776 789999999999999875 367888898777655 3344443
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+++||.
T Consensus 270 -~i~~iv~TdT 279 (323)
T PRK02458 270 -PIKEILVTDS 279 (323)
T ss_pred -CCCEEEEECC
Confidence 4777889987
No 361
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=29.47 E-value=2.7e+02 Score=26.20 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHh----cCCCccEEEeecC-----CCHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS----NLADISFSSLHSD-----LAETERTL 67 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~----~~~~i~~~~l~~~-----~~~~~R~~ 67 (159)
..+..++-.++. ...++.++|.+.+..-+...++.+. ..| +++..++++ +.+++|..
T Consensus 96 KTLta~Lpa~l~-aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LG-Lsv~~~~~~s~~~~~~~~~rr~ 161 (762)
T TIGR03714 96 KTLTATMPLYLN-ALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLG-LTVSLGVVDDPDEEYDANEKRK 161 (762)
T ss_pred hHHHHHHHHHHH-hhcCCceEEeCCCHHHHHHHHHHHHHHHhhcC-CcEEEEECCCCccccCHHHHHH
Confidence 344444443333 3456789999999988887777764 446 677777664 55555543
No 362
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=29.38 E-value=2.6e+02 Score=25.52 Aligned_cols=93 Identities=11% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEe--------------------ec-----CCCHHHHHHHHHHHhccccc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSL--------------------HS-----DLAETERTLILEEFRHTAMK 78 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l--------------------~~-----~~~~~~R~~~l~~F~~~~~~ 78 (159)
++++||-+++...++.+++.|+.. +.-.+..+ +. .--...|.+++.+...+
T Consensus 57 ~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~--- 133 (652)
T PRK05298 57 QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLER--- 133 (652)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhC---
Confidence 478999999999999999998765 32123333 11 11245678888888775
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCC----CCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGES----AISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid----~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
...|+|+|-.+ + .++= +....+-+.-+-.-+.+.+..+.-..
T Consensus 134 --------------------~~~ivv~s~~a---l-~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~ 179 (652)
T PRK05298 134 --------------------RDVIVVASVSC---I-YGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDL 179 (652)
T ss_pred --------------------CCEEEEEcHHH---h-cCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHc
Confidence 44566666552 2 4433 23344556666666677766655443
No 363
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=29.27 E-value=3.8e+02 Score=23.18 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHH
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETE 64 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~ 64 (159)
+.|++.+-++..+ +++..+-|=.+..+.|-+|+..|+.. ..+.+..|||+=++.-
T Consensus 129 KTEMif~~i~~al---~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f 184 (441)
T COG4098 129 KTEMIFQGIEQAL---NQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYF 184 (441)
T ss_pred chhhhHHHHHHHH---hcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhc
Confidence 3455555555443 46789999999999999999999875 2278999999866543
No 364
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=28.30 E-value=1.1e+02 Score=18.68 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=18.9
Q ss_pred EEEEeCchHHHHHHHHHHhcCCCccEEEeec
Q 031433 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHS 58 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~ 58 (159)
.|..+++.-.++.+...|.+.| |.+.....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~g-I~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENG-IPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT---EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCC-CcEEEECC
Confidence 4677888888999999999987 77766543
No 365
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=28.29 E-value=72 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN 47 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~ 47 (159)
+..++|.|.+.+.++.+.+.|++
T Consensus 47 dDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 47 DDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp SSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh
Confidence 47899999999999999999875
No 366
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=27.97 E-value=1.1e+02 Score=23.26 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=4.3
Q ss_pred HHHHHHHHHh
Q 031433 37 ELDAVCSAVS 46 (159)
Q Consensus 37 ~~~~l~~~L~ 46 (159)
.+++|++.|.
T Consensus 95 ~Ae~Ly~iL~ 104 (181)
T PF09439_consen 95 VAEYLYDILS 104 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 367
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=27.61 E-value=75 Score=30.63 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=39.1
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhccc
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCL 145 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~ 145 (159)
..+.+++-.+ +.+|-|.|+|=.+.-..-..+...-.|-+||..
T Consensus 501 ~~~fifs~~a----l~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~l 543 (986)
T PRK15483 501 TRRFLFSKWT----LREGWDNPNVFQIAKLRSSGSETSKLQEVGRGL 543 (986)
T ss_pred CeEEEEEhHH----hhhcCCCCCeEEEEEeccCCchHHHHHHhccce
Confidence 6899999999 999999999998888888888888999999983
No 368
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=27.18 E-value=2.7e+02 Score=25.58 Aligned_cols=92 Identities=10% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEe-------------------------ecCCCHHHHHHHHHHHhccccc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSL-------------------------HSDLAETERTLILEEFRHTAMK 78 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l-------------------------~~~~~~~~R~~~l~~F~~~~~~ 78 (159)
++++||.+.++..+..++.-|+.. +.-.+..+ ...--...|..++.+...+
T Consensus 54 ~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R~~al~~L~~~--- 130 (655)
T TIGR00631 54 NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLRHSATRSLLER--- 130 (655)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHHHHHHHHHHhC---
Confidence 478999999999999999999775 32123333 1112345678888888775
Q ss_pred ccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCC----CCCCCeEEEccCCCChhHHHhhhhc
Q 031433 79 WNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGES----AISARVLINYELPTKKETYIRRMTT 143 (159)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid----~~~v~~VI~~d~P~~~~~yi~R~GR 143 (159)
.-.|+|+|-. +-.|+= +....+.+.-+-.-+.+.++.+.-.
T Consensus 131 --------------------~~~ivVasv~----~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~ 175 (655)
T TIGR00631 131 --------------------RDVIVVASVS----CIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE 175 (655)
T ss_pred --------------------CCeEEEEcHH----HhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHH
Confidence 4456666654 334432 3334455555555566666665543
No 369
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.06 E-value=2.8e+02 Score=22.98 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=43.5
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-.++.+||. +.|-.+....++.|++.| .+.+.+-||=++... ++++.+.
T Consensus 215 v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a----~~~l~~s---------------------- 268 (319)
T PRK04923 215 VQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPA----VDNINNS---------------------- 268 (319)
T ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchH----HHHHhhC----------------------
Confidence 346677776 778899999999999875 257778898888654 3445443
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+++||.
T Consensus 269 -~i~~iv~Tdt 278 (319)
T PRK04923 269 -QLDELVVTDT 278 (319)
T ss_pred -CCCEEEEeCC
Confidence 4777888887
No 370
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.02 E-value=2.9e+02 Score=24.48 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=57.2
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
.++-.++.+......+-+++|-.+|++-+...-+.+++.+ ......+.|+...++....+. .
T Consensus 75 f~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~----------- 139 (529)
T KOG0337|consen 75 FLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----E----------- 139 (529)
T ss_pred HHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----c-----------
Confidence 3445555555434456899999999999888777777663 246666666665554333221 1
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
...+++||+-.+- .+..-+++..|.+|+.
T Consensus 140 ------------npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 140 ------------NPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred ------------CCCEEEecCceeeeeehheeccccceeeeee
Confidence 4678888863100 1344577888999884
No 371
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=26.96 E-value=2.7e+02 Score=24.38 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=44.1
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-.++.+||. +.|-.+....++.|++.| .+.+.+-||=++.... +++.+.
T Consensus 333 V~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~----~rl~~s---------------------- 386 (439)
T PTZ00145 333 VYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAI----ERIEAS---------------------- 386 (439)
T ss_pred CCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHH----HHHhcC----------------------
Confidence 346777776 778899999999999875 3678888998887654 344444
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+|+||.
T Consensus 387 -~i~~IvvTdT 396 (439)
T PTZ00145 387 -PLEEVVVTDT 396 (439)
T ss_pred -CCCEEEEeCC
Confidence 4777899997
No 372
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.78 E-value=55 Score=21.63 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHhcCCCccEEEee----cCCCHHHHHHHHHHHhcc
Q 031433 33 SSRDELDAVCSAVSNLADISFSSLH----SDLAETERTLILEEFRHT 75 (159)
Q Consensus 33 ns~~~~~~l~~~L~~~~~i~~~~l~----~~~~~~~R~~~l~~F~~~ 75 (159)
-|..++++ |++.| +.+..+. .+-...-+..+++.++++
T Consensus 18 AT~gTa~~----L~~~G-i~~~~v~~~~~~~~~~~g~~~i~~~i~~~ 59 (95)
T PF02142_consen 18 ATEGTAKF----LKEHG-IEVTEVVNKIGEGESPDGRVQIMDLIKNG 59 (95)
T ss_dssp EEHHHHHH----HHHTT---EEECCEEHSTG-GGTHCHHHHHHHHTT
T ss_pred EChHHHHH----HHHcC-CCceeeeeecccCccCCchhHHHHHHHcC
Confidence 46677555 45666 6733332 221233344689999998
No 373
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=26.68 E-value=4.4e+02 Score=23.08 Aligned_cols=24 Identities=4% Similarity=0.076 Sum_probs=13.2
Q ss_pred hhHHHhhhhcccCCCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
...+.-|+|+....+|....|-++
T Consensus 288 l~~l~ERaG~~~~~~GSIT~i~tV 311 (442)
T PRK08927 288 LPRLLERAGPGPIGEGTITGLFTV 311 (442)
T ss_pred hhHHHHHhcCCCCCCeeeeeeeee
Confidence 345566888753345555554443
No 374
>PRK14994 SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional
Probab=26.53 E-value=1.9e+02 Score=23.65 Aligned_cols=45 Identities=7% Similarity=0.144 Sum_probs=21.4
Q ss_pred EEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+|||........+-+.+... -....+|..-..+.-..+++...+|
T Consensus 40 vI~~edtr~t~~ll~~~~i~--~~~~~~~~~~~~~~~~~i~~~l~~G 84 (287)
T PRK14994 40 LIAAEDTRHTGLLLQHFAIN--ARLFALHDHNEQQKAETLLAKLQEG 84 (287)
T ss_pred EEEEeCCcchHHHHhhcCCC--CEEEEccCCCHHHHHHHHHHHHHCC
Confidence 45554333334344444322 2556666443333334455666776
No 375
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=26.36 E-value=1.7e+02 Score=28.22 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=41.7
Q ss_pred CceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC------CCCeEEEEEE
Q 031433 98 HKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA------AGTSFSDIIL 156 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~------~~g~~i~~v~ 156 (159)
..+++||.+|. +--|-|.|..+.++ .|=|-..-..+|-+.|+.| ..|.++.|+.
T Consensus 592 d~~kilIV~dm----lLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 592 DPLDLLIVVDM----LLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCEEEEEcc----ccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 37999999999 99999999887766 5777777788888888722 3466666654
No 376
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=26.01 E-value=58 Score=27.02 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=35.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
...++|++.||---=.||..+.+|...|+-.+.-|+|+.-
T Consensus 169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl 208 (308)
T COG1054 169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGIL 208 (308)
T ss_pred hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHH
Confidence 4446899999999999999999999999778999999864
No 377
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=25.74 E-value=4.6e+02 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=13.4
Q ss_pred hhHHHhhhhcccCCCCeEEEEEEe
Q 031433 134 KETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
...+.-|+|+....+|....|-++
T Consensus 298 l~~l~ERag~~~~~~GSITai~tV 321 (451)
T PRK05688 298 LPKLVERAGNAEPGGGSITAFYTV 321 (451)
T ss_pred hHHHHHHhcCCCCCCceeeEEEEE
Confidence 445667888763335555555443
No 378
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.64 E-value=3.2e+02 Score=22.03 Aligned_cols=41 Identities=10% Similarity=0.221 Sum_probs=31.8
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHH
Q 031433 24 PGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETE 64 (159)
Q Consensus 24 ~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~ 64 (159)
.++++||. +.|-.+....++.|++.| .+.+..+|+=.+...
T Consensus 203 ~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a 248 (285)
T PRK00934 203 KGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDA 248 (285)
T ss_pred CCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHH
Confidence 46777776 778899999999999885 357888888666654
No 379
>PRK10824 glutaredoxin-4; Provisional
Probab=25.62 E-value=2.4e+02 Score=19.73 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=29.0
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHH
Q 031433 25 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 25 ~~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F 72 (159)
..+++||.. ..--|....+.|.+.+ +....+.=+-..+.|. .+.++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-i~~~~idi~~d~~~~~-~l~~~ 65 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-ERFAYVDILQNPDIRA-ELPKY 65 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-CCceEEEecCCHHHHH-HHHHH
Confidence 489999987 3667888888888886 5555554333344333 34444
No 380
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=25.40 E-value=1.2e+02 Score=20.43 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=24.5
Q ss_pred HHHHHHHHccCCCCCcEEEEeCch-HHHHHHHHHHhcCCCccE
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISF 53 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~-~~~~~l~~~L~~~~~i~~ 53 (159)
.+.++.+.. .++++++++|+- .+-+.+.+.|+..| +.+
T Consensus 20 ~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~G-i~~ 58 (101)
T PF13344_consen 20 VEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLG-IPV 58 (101)
T ss_dssp HHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTT-TT-
T ss_pred HHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcC-cCC
Confidence 345554443 358889999876 44588889998887 453
No 381
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=25.28 E-value=3.8e+02 Score=21.88 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=20.1
Q ss_pred cEEEEeC---chHHHHHHHHHHhcCCCc-cEEE--eecCCCHHHHHH
Q 031433 27 PMIVCCS---SRDELDAVCSAVSNLADI-SFSS--LHSDLAETERTL 67 (159)
Q Consensus 27 k~iIF~n---s~~~~~~l~~~L~~~~~i-~~~~--l~~~~~~~~R~~ 67 (159)
-+.||+- ..+++.++.+.+.+.+.+ +... -.++.+.-+|..
T Consensus 102 ~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 102 FAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 4567763 445555555555554322 2222 235556656553
No 382
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=25.24 E-value=3.9e+02 Score=22.08 Aligned_cols=32 Identities=6% Similarity=0.152 Sum_probs=27.0
Q ss_pred CcCCCCCCCCCeEE---EccCCCChhHHHhhhhcc
Q 031433 113 LSSGESAISARVLI---NYELPTKKETYIRRMTTC 144 (159)
Q Consensus 113 ~~rGid~~~v~~VI---~~d~P~~~~~yi~R~GR~ 144 (159)
.+|+=++..+++|| +-.++.+...+.|..|=.
T Consensus 110 ~AKaG~iAp~dv~ip~G~t~~~P~~~~~fq~Lgip 144 (310)
T PTZ00135 110 PARAGVIAPIDVVIPAGPTGMDPSQTSFFQALGIA 144 (310)
T ss_pred ccccCCCCCceEEEcCCCCCCCcchhhHHHHcCCc
Confidence 78888899999999 667777889999999865
No 383
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=25.00 E-value=2.4e+02 Score=21.59 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
-.++.|||+ +.|-.+.-..++.|++.|- +-+.+-||=++... .+.+.+.
T Consensus 81 V~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A----~~~l~~s---------------------- 134 (184)
T PF14572_consen 81 VKGKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDA----PERLEES---------------------- 134 (184)
T ss_dssp -TTSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTH----HHHHHHS----------------------
T ss_pred ccCCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchH----HHHHhhc----------------------
Confidence 345777877 7788888899999998863 45667788777654 3444554
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+|+||.
T Consensus 135 -~Id~vvvTnT 144 (184)
T PF14572_consen 135 -PIDEVVVTNT 144 (184)
T ss_dssp -SESEEEEETT
T ss_pred -CCeEEEEecc
Confidence 6788888887
No 384
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=24.99 E-value=1.9e+02 Score=25.30 Aligned_cols=34 Identities=6% Similarity=-0.061 Sum_probs=27.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEee
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLH 57 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~ 57 (159)
..++++++||++-......+..|...|+ ....++
T Consensus 447 ~~~~~iivyC~~G~rS~~aa~~L~~~G~-~nv~~y 480 (482)
T PRK01269 447 DQSKTYLLYCDRGVMSRLQALYLREQGF-SNVKVY 480 (482)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHHcCC-ccEEec
Confidence 4567899999999999999999999884 544443
No 385
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=24.86 E-value=2.1e+02 Score=23.10 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 35 RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 35 ~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
-+.++.+.+.+++...+-++.+|.+.+.+ +..+..|..+
T Consensus 130 f~~~d~~i~~lk~~~d~IIVd~HaeatsE--K~a~~~~ldg 168 (266)
T TIGR00282 130 FKVLKELINMLKKDCDLIFVDFHAETTSE--KNAFGMAFDG 168 (266)
T ss_pred HHHHHHHHHhhhcCCCEEEEEeCCCCHHH--HHHHHHHhCC
Confidence 35566676767665446788999998765 5668888887
No 386
>PRK06756 flavodoxin; Provisional
Probab=24.70 E-value=2.6e+02 Score=19.73 Aligned_cols=63 Identities=10% Similarity=0.080 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeC--c-----hHHHHHHHHHHhcCCCccE----EEeecCCCHHHHHHHHHHHh
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCS--S-----RDELDAVCSAVSNLADISF----SSLHSDLAETERTLILEEFR 73 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~n--s-----~~~~~~l~~~L~~~~~i~~----~~l~~~~~~~~R~~~l~~F~ 73 (159)
+....+++.+......++++.+|.. + ...+..+.+.|.+.|. .+ ..+++..+.++ .+.+++|.
T Consensus 67 ~~~~~fl~~l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~-~~v~~~~~~~~~p~~~d-~~~~~~~~ 140 (148)
T PRK06756 67 DDFLDFYDAMDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGA-AVVLEGLKVELTPEDED-VEKCLQFG 140 (148)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCC-EEcCCCeEEecCCCHHH-HHHHHHHH
Confidence 3466677666443456789999965 2 3667788888988762 33 34566555444 44445453
No 387
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=24.57 E-value=2.5e+02 Score=26.52 Aligned_cols=60 Identities=12% Similarity=0.121 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCch----HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSR----DELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~----~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
..+...+..++. ...++++-|.+.+- ..++++...+...| +.+..+.+++++++|..++.
T Consensus 106 KTLvA~l~a~l~-al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LG-l~vg~i~~~~~~~~r~~~y~ 169 (796)
T PRK12906 106 KTLTATLPVYLN-ALTGKGVHVVTVNEYLSSRDATEMGELYRWLG-LTVGLNLNSMSPDEKRAAYN 169 (796)
T ss_pred CcHHHHHHHHHH-HHcCCCeEEEeccHHHHHhhHHHHHHHHHhcC-CeEEEeCCCCCHHHHHHHhc
Confidence 344555544443 55678888888764 55677888888888 89999999999999876553
No 388
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=24.56 E-value=4.3e+02 Score=23.37 Aligned_cols=40 Identities=10% Similarity=0.052 Sum_probs=23.8
Q ss_pred EEEEeC---chHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHH
Q 031433 28 MIVCCS---SRDELDAVCSAVSNLA---DISFSSLHSDLAETERTL 67 (159)
Q Consensus 28 ~iIF~n---s~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~ 67 (159)
++||+- +++..+++.+.|.+.+ ...+++-+++.++-+|..
T Consensus 184 v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 184 AIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERII 229 (466)
T ss_pred EEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 566642 4677778888887765 223333346666666654
No 389
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=23.85 E-value=3.2e+02 Score=20.59 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=29.4
Q ss_pred HHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHH
Q 031433 15 LHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (159)
Q Consensus 15 l~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~ 64 (159)
...+.. ..+.+.+.||.|. ..+.+.+.+++.+ +.++=|||+.+.+.
T Consensus 40 a~~l~~-~~~~~~VgVf~~~--~~~~I~~~~~~~~-ld~vQLHG~e~~e~ 85 (197)
T PF00697_consen 40 ARELVS-AVPPKIVGVFVNQ--SPEEILEIVEELG-LDVVQLHGDESPEY 85 (197)
T ss_dssp HHHHHC-CSSSSEEEEESSS---HHHHHHHHHHCT-ESEEEE-SGG-HHH
T ss_pred HHHHHH-hcCCCEEEEEcCC--CHHHHHHHHHHcC-CCEEEECCCCCHHH
Confidence 333444 3334489999975 4566677777776 89999999985444
No 390
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=23.69 E-value=3.8e+02 Score=22.56 Aligned_cols=88 Identities=9% Similarity=0.057 Sum_probs=48.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCH---HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE---TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~---~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+++ +.++-.-+..+.+++.|.+.|.-.+......... +++....-.|.. +
T Consensus 172 l~~k~-vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~------------------------~ 226 (338)
T PRK00676 172 SKKAS-LLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQD------------------------P 226 (338)
T ss_pred ccCCE-EEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhccc------------------------C
Confidence 33455 5555668999999999999973234444443311 111000002222 5
Q ss_pred eeEEEE----ecCCCCCCcCCC--CCCCCCeEEEccCCCChhH
Q 031433 100 SHMIVV----TDACLPLLSSGE--SAISARVLINYELPTKKET 136 (159)
Q Consensus 100 ~~vLV~----Td~~~~~~~rGi--d~~~v~~VI~~d~P~~~~~ 136 (159)
.+|+|+ |..-.|....+. +.+. +++|...+|++++.
T Consensus 227 ~DvVIs~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPRdId~ 268 (338)
T PRK00676 227 YDVIFFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPRTFPW 268 (338)
T ss_pred CCEEEEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCCCCcc
Confidence 778875 544344444321 1111 58899999999874
No 391
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.94 E-value=2.1e+02 Score=21.72 Aligned_cols=33 Identities=9% Similarity=0.050 Sum_probs=25.3
Q ss_pred EEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
-|.++..+....++++|.+.|+-++..+++...
T Consensus 95 ~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~ 127 (269)
T cd06293 95 KVFCDNEQGGRLATRHLARAGHRRIAFVGGPDA 127 (269)
T ss_pred EEEECCHHHHHHHHHHHHHCCCceEEEEecCcc
Confidence 467777788889999999888667777876543
No 392
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=22.81 E-value=5.2e+02 Score=22.65 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=11.5
Q ss_pred hHHHhhhhcccCCCCeEEEEEEe
Q 031433 135 ETYIRRMTTCLAAGTSFSDIILL 157 (159)
Q Consensus 135 ~~yi~R~GR~~~~~g~~i~~v~~ 157 (159)
..+.-|+|.. .+|....|-++
T Consensus 273 ~~L~ERag~~--~~GSIT~i~~V 293 (449)
T TIGR03305 273 AELEERIATT--SDGAITSIQAV 293 (449)
T ss_pred HHHHHhhcCC--CCcCeeEEEEE
Confidence 4555688864 34555554443
No 393
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=22.76 E-value=1.5e+02 Score=22.22 Aligned_cols=27 Identities=4% Similarity=0.081 Sum_probs=20.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL 48 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~ 48 (159)
-..+.+|+++++.....+.+.+.|++.
T Consensus 44 L~~ge~~l~v~~~~~~~~~l~~~L~~~ 70 (191)
T PF14417_consen 44 LARGERCLYVAPDPRRVEELRDELRKA 70 (191)
T ss_pred HHCCCeEEEEECCCCCHHHHHHHHHhc
Confidence 345788999988677788888888643
No 394
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=22.56 E-value=2.1e+02 Score=17.90 Aligned_cols=30 Identities=7% Similarity=0.017 Sum_probs=22.1
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEe
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSL 56 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l 56 (159)
+..+|.++|...+-...+.|++.| +.+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~g-i~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNG-IPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCC-CcEEEe
Confidence 356777788888999999999886 444433
No 395
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=22.54 E-value=1.9e+02 Score=23.71 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
-.+.+++|+||.|-.++-...-.|+..++-....+-|+
T Consensus 231 i~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGS 268 (285)
T COG2897 231 IDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGS 268 (285)
T ss_pred CCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccCh
Confidence 55679999999999999888888888764344333343
No 396
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=22.25 E-value=3.6e+02 Score=21.10 Aligned_cols=39 Identities=10% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCCccEEEeecC-CCHHHHHHHHHHHhcc
Q 031433 36 DELDAVCSAVSNLADISFSSLHSD-LAETERTLILEEFRHT 75 (159)
Q Consensus 36 ~~~~~l~~~L~~~~~i~~~~l~~~-~~~~~R~~~l~~F~~~ 75 (159)
...+.+.++|.+.++ .++.+.+. .+.+.|+.+++.|+..
T Consensus 82 ~~l~dl~~~l~~~~G-~VAI~DATN~T~~RR~~l~~~~~~~ 121 (222)
T PF01591_consen 82 EALEDLIEWLQEEGG-QVAIFDATNSTRERRKMLVERFKEH 121 (222)
T ss_dssp HHHHHHHHHHHTS---SEEEEES---SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCC-eEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 445677777875553 77777765 4556666666767665
No 397
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=22.22 E-value=3.2e+02 Score=20.02 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCCCCcEEEEeCchHH---HHHHHHHHhcCCCccEEEee---cCCCHHHHHHHHHHHhcc
Q 031433 22 RRPGLPMIVCCSSRDE---LDAVCSAVSNLADISFSSLH---SDLAETERTLILEEFRHT 75 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~---~~~l~~~L~~~~~i~~~~l~---~~~~~~~R~~~l~~F~~~ 75 (159)
....++++|||-.-.. .-.++++|.+.| +.+.++. .+-..++-...++.+++-
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G-~~V~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRG-YNVTVYLVGPPEKLSEDAKQQLEILKKM 80 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTT-CEEEEEEEESSSSTSHHHHHHHHHHHHT
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCC-CeEEEEEEeccccCCHHHHHHHHHHHhc
Confidence 3567999999976544 458889998888 4666633 223334445566666664
No 398
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=21.92 E-value=2.8e+02 Score=20.31 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHc-----cCCCCCcEEEEeCchHHHHHHHHHHhc
Q 031433 9 ETLVELLHLVVA-----GRRPGLPMIVCCSSRDELDAVCSAVSN 47 (159)
Q Consensus 9 ~~l~~ll~~l~~-----~~~~~~k~iIF~ns~~~~~~l~~~L~~ 47 (159)
..+..++..+.. ....+++++|.+.+...++.+.+.|.+
T Consensus 32 ~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 32 TTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 345566665521 156689999999999999999999988
No 399
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=21.90 E-value=5.2e+02 Score=22.27 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=12.0
Q ss_pred hhHHHhhhhcccCCCCeEEEEEE
Q 031433 134 KETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
...+.-|+|+.-..+|....|-+
T Consensus 267 l~~l~ERag~~~~~~GSIT~~~t 289 (411)
T TIGR03496 267 LPQLVERAGNGEEGKGSITAFYT 289 (411)
T ss_pred hHHHHHHhcccCCCCcceeEEEE
Confidence 34556677765333455555443
No 400
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.69 E-value=4.9e+02 Score=21.89 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=31.1
Q ss_pred CcEEEEeCc----hHHHHHHHHHHhcCCCccEEEeec---CCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSS----RDELDAVCSAVSNLADISFSSLHS---DLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns----~~~~~~l~~~L~~~~~i~~~~l~~---~~~~~~R~~~l~~F~~~ 75 (159)
++++|.+.. ....+.+.+.|.+.+ +.+..+.+ +-+.+.-.+..+.++..
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~-i~~~~f~~v~~np~~~~v~~~~~~~~~~ 87 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERN-IFSVIYDGTQPNPTTENVAAGLKLLKEN 87 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcC-CeEEEeCCCCCCcCHHHHHHHHHHHHHc
Confidence 677777654 124568888888776 56544444 23556666677777775
No 401
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=21.69 E-value=4.8e+02 Score=21.79 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 24 PGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 24 ~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
.++.|||. .+|-.+.-.-++.|++.| .+-+.+-||=++ ....+.+.++
T Consensus 213 ~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs----~~a~~~l~~~----------------------- 265 (314)
T COG0462 213 EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFS----GAALERLEAS----------------------- 265 (314)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhC----hHHHHHHhcC-----------------------
Confidence 35677776 446666677788888875 256777788777 4456777776
Q ss_pred ceeEEEEecC
Q 031433 99 KSHMIVVTDA 108 (159)
Q Consensus 99 ~~~vLV~Td~ 108 (159)
.+.=+|+||.
T Consensus 266 ~i~~vivTnT 275 (314)
T COG0462 266 AIDEVIVTDT 275 (314)
T ss_pred CCCEEEEeCC
Confidence 6788999998
No 402
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=21.67 E-value=5.3e+02 Score=22.26 Aligned_cols=65 Identities=5% Similarity=-0.064 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHcc--------CCCCCcEEEEeCchHHHHHHHHHHhcCCCc-cEEEeecCCCHHHHHHHHHHHhc
Q 031433 7 FQETLVELLHLVVAG--------RRPGLPMIVCCSSRDELDAVCSAVSNLADI-SFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~--------~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i-~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
..++...-|..++.. ...+.++.|.+++.+.+++..+.|.+...- ++.++. ..+++.++-+....
T Consensus 167 s~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~~~~v~v~~---~~~~~~~ie~~L~~ 240 (393)
T PRK15327 167 SPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDYDKNARVIN---ENEENKRVSTWLDT 240 (393)
T ss_pred chHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCCcCceEEec---hHHHHHHHHHHHHh
Confidence 445455556656543 223468999999999999999999885321 333332 34444444444444
No 403
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=21.49 E-value=5.4e+02 Score=22.27 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=12.7
Q ss_pred hhHHHhhhhcccCCCCeEEEEEE
Q 031433 134 KETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 134 ~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
...++-|+|+....+|....|-+
T Consensus 270 l~~L~ERag~~~~~~GSIT~~~t 292 (418)
T TIGR03498 270 LPRLLERAGPGAEGKGSITGIFT 292 (418)
T ss_pred hhHHHHHhccCCCCCcceeeeEE
Confidence 44566788875333455555544
No 404
>PLN02363 phosphoribosylanthranilate isomerase
Probab=21.47 E-value=4.3e+02 Score=21.15 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHH
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~ 64 (159)
.+...++...+ . ....+++-||+|. ..+.+.+.++..+ +.++=|||+.+.+.
T Consensus 85 ~e~a~~I~~~l-~-~~~~~~VgVfv~~--~~~~I~~~~~~~~-ld~VQLHG~e~~~~ 136 (256)
T PLN02363 85 LSVAKEISQVA-R-EGGAKPVGVFVDD--DANTILRAADSSD-LELVQLHGNGSRAA 136 (256)
T ss_pred HHHHHHHHHhc-c-ccCccEEEEEeCC--CHHHHHHHHHhcC-CCEEEECCCCCHHH
Confidence 44455555532 1 1123579999875 3456777777776 79999999887665
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.35 E-value=3.8e+02 Score=23.73 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=38.9
Q ss_pred CCcEEEEeCch----HHHHHHHHHHhcCCCccEEEee-cCCCHHHHHHHHHHHhc
Q 031433 25 GLPMIVCCSSR----DELDAVCSAVSNLADISFSSLH-SDLAETERTLILEEFRH 74 (159)
Q Consensus 25 ~~k~iIF~ns~----~~~~~l~~~L~~~~~i~~~~l~-~~~~~~~R~~~l~~F~~ 74 (159)
+|+.+|..||. ..+..|++.|.++-++.+..+. -.|.+++-..+|++-.-
T Consensus 180 gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 180 GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 58999999986 5678899999887557888887 45888888877776443
No 406
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=21.33 E-value=4.4e+02 Score=21.59 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.++.+||. +.|-.+....++.|++.| .+.+.+.||=++... ++.+.+.
T Consensus 200 ~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a----~~~l~~~ 252 (304)
T PRK03092 200 EGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPA----AERLKNC 252 (304)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHH----HHHHHHC
Confidence 45667776 678888899999999875 367778888877664 4445443
No 407
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=21.25 E-value=3e+02 Score=22.68 Aligned_cols=36 Identities=19% Similarity=0.296 Sum_probs=24.4
Q ss_pred HHHHHHHccCCCCCcEEEEeCc-hHHHHHHHHHHhcC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSS-RDELDAVCSAVSNL 48 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns-~~~~~~l~~~L~~~ 48 (159)
++|+....+......+|||.+- -.++++||+.+--.
T Consensus 167 elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL 203 (300)
T COG4152 167 ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203 (300)
T ss_pred HHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence 4555544434456788999764 47789999987644
No 408
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=21.21 E-value=92 Score=24.89 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=25.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLAD 50 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~ 50 (159)
.++..+.+|+++...+..+++.|++.|+
T Consensus 137 ~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 137 KPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred cCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 3578999999999999999999999874
No 409
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=21.04 E-value=2.2e+02 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.195 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHhcCCCccEEEeecCCCH
Q 031433 34 SRDELDAVCSAVSNLADISFSSLHSDLAE 62 (159)
Q Consensus 34 s~~~~~~l~~~L~~~~~i~~~~l~~~~~~ 62 (159)
..+..+.+.+.|++.+ .-..++|++..
T Consensus 70 ~e~~~e~l~~~l~~~g--v~~vv~GdI~s 96 (223)
T TIGR00290 70 EEDEVEELKGILHTLD--VEAVVFGAIYS 96 (223)
T ss_pred ccHHHHHHHHHHHHcC--CCEEEECCccc
Confidence 4456677777777765 33556666653
No 410
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=21.02 E-value=3.3e+02 Score=20.29 Aligned_cols=32 Identities=6% Similarity=0.174 Sum_probs=24.4
Q ss_pred CcCCCCCCCCCeEE---EccCCCChhHHHhhhhcc
Q 031433 113 LSSGESAISARVLI---NYELPTKKETYIRRMTTC 144 (159)
Q Consensus 113 ~~rGid~~~v~~VI---~~d~P~~~~~yi~R~GR~ 144 (159)
.+|.=++...++|| .-++|.++..+.|..|=.
T Consensus 103 ~ar~G~iA~~dvvi~~G~t~~~p~~~~~~~~lgip 137 (175)
T cd05795 103 PAKPGAIAPCDVVVPAGPTGMPPGPTSFFQALGIP 137 (175)
T ss_pred cccCCCccCceEEEcCCCcCCCCCchHHHHHcCCc
Confidence 67777888888888 234677778899998865
No 411
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=20.82 E-value=2.5e+02 Score=24.93 Aligned_cols=55 Identities=13% Similarity=0.100 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHH-----------HHHHHHHHhcCCCccEEEeecCCCHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSNLADISFSSLHSDLAETER 65 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~-----------~~~l~~~L~~~~~i~~~~l~~~~~~~~R 65 (159)
....++++.+.. ...-++++|++++-+. +-.++++++..|. ++..+.-+++...+
T Consensus 182 rev~e~~~~l~~-~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~G~-~VLlv~DdlTr~A~ 247 (485)
T CHL00059 182 SSVAQVVTTLQE-RGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRGR-HTLIIYDDLSKQAQ 247 (485)
T ss_pred hHHHHHHHHhhc-ccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHcCC-CEEEEEcChhHHHH
Confidence 344556666655 4455777888777654 4568888988874 88888888876553
No 412
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=20.71 E-value=1.2e+02 Score=23.06 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=22.9
Q ss_pred CCcEEEEeCchH--HHHHHHHHHhcCCCccEEEee
Q 031433 25 GLPMIVCCSSRD--ELDAVCSAVSNLADISFSSLH 57 (159)
Q Consensus 25 ~~k~iIF~ns~~--~~~~l~~~L~~~~~i~~~~l~ 57 (159)
-.++++|++... .+..+++.|...+ +.++.+.
T Consensus 82 ~DRVllfs~~~~~~e~~~~a~~L~~~g-i~~v~Vs 115 (172)
T PF10740_consen 82 TDRVLLFSPFSTDEEAVALAKQLIEQG-IPFVGVS 115 (172)
T ss_dssp T-EEEEEES-S--HHHHHHHHHHHHHT---EEEEE
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHCC-CCEEEEE
Confidence 479999998654 4678899999998 7888888
No 413
>PRK05922 type III secretion system ATPase; Validated
Probab=20.65 E-value=5.7e+02 Score=22.28 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=12.1
Q ss_pred ChhHHHhhhhcccCCCCeEEEEEE
Q 031433 133 KKETYIRRMTTCLAAGTSFSDIIL 156 (159)
Q Consensus 133 ~~~~yi~R~GR~~~~~g~~i~~v~ 156 (159)
....+.-|+|+. .+|....|.+
T Consensus 286 ~l~~l~ERag~~--~~GSIT~~~t 307 (434)
T PRK05922 286 HVSEFTERAGNN--DKGSITALYA 307 (434)
T ss_pred HhHHHHHhhcCC--CCcceeEEEE
Confidence 344566677773 3555555533
No 414
>PRK04034 rps8p 30S ribosomal protein S8P; Reviewed
Probab=20.61 E-value=3.2e+02 Score=19.40 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEe
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSL 56 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l 56 (159)
+.+.+++..+-......++.+++.+.-+....+.+.|.+.|++.-+..
T Consensus 5 d~iad~lt~IrNa~~a~~~~v~~~p~Sk~~~~il~iL~~eGyI~~~~~ 52 (130)
T PRK04034 5 DPLANALSTIKNAEMVGKKEVIIKPASKLIGNVLRVMQDEGYIGEFEY 52 (130)
T ss_pred cHHHHHHHHhHhHHHcCCceEEEEcccHHHHHHHHHHHHCCCceEEEE
Confidence 345566665554344566766778888888999999999998766554
No 415
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=20.52 E-value=3.1e+02 Score=22.31 Aligned_cols=57 Identities=5% Similarity=-0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHH-----------HHHHHHHHhcC-CCccEEEeecCCCHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDE-----------LDAVCSAVSNL-ADISFSSLHSDLAETERTL 67 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~-----------~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~ 67 (159)
+...++++.+.. ...-++++|++++-++ +-.++++++.. | .++..+.-+++.-.+..
T Consensus 111 ~Ev~e~~~~~~~-~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g-~~Vl~~~Dsltr~a~A~ 179 (274)
T cd01133 111 REGNDLYHEMKE-SGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEG-QDVLLFIDNIFRFTQAG 179 (274)
T ss_pred HHHHHHHHHHHh-cCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEEeChhHHHHHH
Confidence 344555665554 4445777888776543 45778888877 7 48888888877665443
No 416
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.49 E-value=3.9e+02 Score=20.31 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=32.9
Q ss_pred CcEEEEeCch-----HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSSR-----DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns~-----~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+++|||..+- .....+++.|++.+ +.+..+.=+-. .+-...++.|-+.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~-I~v~vI~~G~~-~~~~~~l~~~~~~ 160 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNN-VSVDIINFGEI-DDNTEKLTAFIDA 160 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcC-CeEEEEEeCCC-CCCHHHHHHHHHH
Confidence 5888887776 45667888888887 78777773333 3334667777664
No 417
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.36 E-value=2.1e+02 Score=17.17 Aligned_cols=46 Identities=4% Similarity=0.053 Sum_probs=33.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEee
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLH 57 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~ 57 (159)
.++.+.+.+.. ...+..+.|.++.......+..+++..|+ .+....
T Consensus 12 Pl~~~~~~l~~-l~~g~~l~v~~d~~~~~~~i~~~~~~~g~-~~~~~~ 57 (69)
T cd00291 12 PVLKTKKALEK-LKSGEVLEVLLDDPGAVEDIPAWAKETGH-EVLEVE 57 (69)
T ss_pred HHHHHHHHHhc-CCCCCEEEEEecCCcHHHHHHHHHHHcCC-EEEEEE
Confidence 34455554444 56678888888888889999999999984 665544
No 418
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=20.29 E-value=2.4e+02 Score=24.57 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~ 48 (159)
.++-+.|...-..+.+++.|+||-.++++++-.|...
T Consensus 95 ~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~ 131 (442)
T KOG1404|consen 95 HDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARL 131 (442)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHH
Confidence 3444444443445688899999999999999988875
No 419
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.22 E-value=4.9e+02 Score=21.27 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
.....+||+..-- ...+++++|+=.+...-.-++..|...+ ..+...|+.
T Consensus 136 p~av~~ll~~~~i-~l~Gk~V~ViGrs~~vGrpla~lL~~~~-atVtv~hs~ 185 (279)
T PRK14178 136 PNGIMTLLHEYKI-SIAGKRAVVVGRSIDVGRPMAALLLNAD-ATVTICHSK 185 (279)
T ss_pred HHHHHHHHHHcCC-CCCCCEEEEECCCccccHHHHHHHHhCC-CeeEEEecC
Confidence 4566777775433 5678999999999899999999999887 588899974
No 420
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.07 E-value=2.9e+02 Score=20.81 Aligned_cols=32 Identities=3% Similarity=-0.004 Sum_probs=23.5
Q ss_pred EEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 30 VCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 30 IF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
|.++..+....++++|.++|+-++..+.+...
T Consensus 95 V~~d~~~a~~~~~~~l~~~g~~~i~~i~~~~~ 126 (265)
T cd06290 95 IAVDNFQGGYLATQHLIDLGHRRIAHITGPRG 126 (265)
T ss_pred EEECcHHHHHHHHHHHHHCCCCeEEEEeCccc
Confidence 55566777788888888887667777776644
Done!