Query 031433
Match_columns 159
No_of_seqs 164 out of 1258
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 22:38:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031433.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031433hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 100.0 1.5E-28 5.3E-33 181.8 14.3 119 9-156 20-140 (163)
2 1t5i_A C_terminal domain of A 100.0 2.1E-28 7.2E-33 182.9 14.4 117 11-156 18-136 (172)
3 3eaq_A Heat resistant RNA depe 100.0 3.3E-28 1.1E-32 187.5 13.8 117 11-156 18-136 (212)
4 2rb4_A ATP-dependent RNA helic 100.0 1.2E-27 4.1E-32 178.7 15.7 120 8-156 18-145 (175)
5 1fuk_A Eukaryotic initiation f 100.0 1.5E-27 5.1E-32 176.6 14.5 117 11-156 17-135 (165)
6 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.3E-27 4.5E-32 180.7 12.7 119 9-156 31-151 (185)
7 2p6n_A ATP-dependent RNA helic 99.9 1.7E-27 5.8E-32 181.2 13.4 119 8-156 39-159 (191)
8 3i32_A Heat resistant RNA depe 99.9 5.8E-27 2E-31 190.0 13.2 117 11-156 15-133 (300)
9 2yjt_D ATP-dependent RNA helic 99.9 6.4E-28 2.2E-32 179.6 0.0 118 9-155 15-134 (170)
10 2db3_A ATP-dependent RNA helic 99.9 2.1E-25 7.1E-30 187.5 14.9 103 26-156 301-405 (434)
11 2i4i_A ATP-dependent RNA helic 99.9 1.3E-24 4.3E-29 179.3 13.4 117 12-156 263-381 (417)
12 3pey_A ATP-dependent RNA helic 99.9 8.1E-24 2.8E-28 172.4 15.4 120 7-155 226-353 (395)
13 2j0s_A ATP-dependent RNA helic 99.9 3.8E-24 1.3E-28 176.5 12.9 105 24-156 275-381 (410)
14 2v1x_A ATP-dependent DNA helic 99.9 1.1E-23 3.8E-28 184.1 16.0 116 10-154 253-368 (591)
15 3i5x_A ATP-dependent RNA helic 99.9 8.7E-24 3E-28 181.8 14.9 107 22-156 336-447 (563)
16 3fht_A ATP-dependent RNA helic 99.9 8.3E-24 2.8E-28 173.7 14.0 118 9-155 251-376 (412)
17 1oyw_A RECQ helicase, ATP-depe 99.9 1.6E-23 5.5E-28 180.5 15.7 104 23-154 234-339 (523)
18 3sqw_A ATP-dependent RNA helic 99.9 1.4E-23 4.9E-28 181.9 14.9 107 22-156 285-396 (579)
19 1s2m_A Putative ATP-dependent 99.9 1.6E-23 5.3E-28 172.1 14.3 115 12-155 246-362 (400)
20 4gl2_A Interferon-induced heli 99.9 4.6E-24 1.6E-28 187.5 10.9 120 8-156 383-516 (699)
21 3tbk_A RIG-I helicase domain; 99.9 2.3E-24 7.8E-29 182.9 8.5 122 7-156 372-505 (555)
22 1xti_A Probable ATP-dependent 99.9 2.7E-23 9.3E-28 169.8 14.6 106 23-156 248-355 (391)
23 4a2p_A RIG-I, retinoic acid in 99.9 5E-24 1.7E-28 181.3 9.6 119 7-155 373-505 (556)
24 3eiq_A Eukaryotic initiation f 99.9 1E-23 3.4E-28 173.5 10.5 117 11-156 267-385 (414)
25 1hv8_A Putative ATP-dependent 99.9 6.1E-23 2.1E-27 165.7 14.7 116 9-155 225-342 (367)
26 1wp9_A ATP-dependent RNA helic 99.9 3.4E-23 1.2E-27 171.2 11.8 120 8-156 345-473 (494)
27 2ykg_A Probable ATP-dependent 99.9 6.3E-23 2.1E-27 180.2 9.4 118 9-155 383-513 (696)
28 2d7d_A Uvrabc system protein B 99.9 5.3E-22 1.8E-26 175.4 13.2 117 11-155 431-553 (661)
29 4a2q_A RIG-I, retinoic acid in 99.9 2E-22 6.9E-27 180.7 10.0 120 7-156 614-747 (797)
30 1tf5_A Preprotein translocase 99.9 3.3E-22 1.1E-26 179.4 11.0 122 6-157 413-544 (844)
31 3jux_A Protein translocase sub 99.9 1E-21 3.5E-26 174.1 13.3 125 3-157 452-586 (822)
32 3oiy_A Reverse gyrase helicase 99.9 1.4E-21 4.6E-26 162.2 13.1 109 7-155 240-362 (414)
33 1c4o_A DNA nucleotide excision 99.9 9.3E-22 3.2E-26 173.9 12.6 104 24-155 438-547 (664)
34 3fmp_B ATP-dependent RNA helic 99.9 1.1E-23 3.8E-28 178.0 0.0 107 22-156 330-444 (479)
35 1z5z_A Helicase of the SNF2/RA 99.9 1.5E-21 5E-26 156.0 12.1 111 7-147 97-209 (271)
36 4a2w_A RIG-I, retinoic acid in 99.9 4.3E-22 1.5E-26 181.7 9.6 118 8-155 615-746 (936)
37 2z0m_A 337AA long hypothetical 99.9 1.7E-21 5.8E-26 155.7 11.3 102 22-155 217-320 (337)
38 1fuu_A Yeast initiation factor 99.9 4E-23 1.4E-27 168.7 0.0 114 13-155 248-363 (394)
39 3fho_A ATP-dependent RNA helic 99.8 5.9E-22 2E-26 169.7 5.1 119 9-156 342-468 (508)
40 2fsf_A Preprotein translocase 99.8 2.2E-20 7.7E-25 167.5 12.6 125 3-157 419-582 (853)
41 3dmq_A RNA polymerase-associat 99.8 3.2E-20 1.1E-24 169.9 12.5 115 11-154 490-609 (968)
42 1yks_A Genome polyprotein [con 99.8 1.6E-20 5.4E-25 158.7 7.9 98 25-155 177-296 (440)
43 1nkt_A Preprotein translocase 99.8 7.9E-20 2.7E-24 164.5 12.0 125 3-157 438-616 (922)
44 2whx_A Serine protease/ntpase/ 99.8 4E-20 1.4E-24 162.4 9.4 98 25-155 355-475 (618)
45 2z83_A Helicase/nucleoside tri 99.8 1.5E-20 5E-25 159.5 5.6 99 25-156 190-311 (459)
46 2jlq_A Serine protease subunit 99.8 6.7E-20 2.3E-24 155.1 9.6 97 25-154 188-307 (451)
47 2xau_A PRE-mRNA-splicing facto 99.8 2.4E-20 8.2E-25 167.4 5.9 105 23-154 301-439 (773)
48 4ddu_A Reverse gyrase; topoiso 99.8 1.7E-19 5.7E-24 167.0 11.4 86 7-132 297-388 (1104)
49 2fwr_A DNA repair protein RAD2 99.8 5.7E-20 2E-24 154.9 7.3 102 13-148 338-439 (472)
50 3l9o_A ATP-dependent RNA helic 99.8 1.5E-19 5.3E-24 167.3 10.7 119 8-156 426-593 (1108)
51 2wv9_A Flavivirin protease NS2 99.8 1.6E-19 5.6E-24 159.9 9.5 99 24-155 409-530 (673)
52 3h1t_A Type I site-specific re 99.8 4.7E-19 1.6E-23 153.6 11.6 105 18-147 432-543 (590)
53 2xgj_A ATP-dependent RNA helic 99.8 4.2E-19 1.4E-23 163.2 11.5 116 11-155 331-496 (1010)
54 1z63_A Helicase of the SNF2/RA 99.8 1.7E-18 5.9E-23 146.8 13.6 109 9-147 328-438 (500)
55 2va8_A SSO2462, SKI2-type heli 99.8 1.4E-18 4.8E-23 153.7 13.2 116 9-154 239-404 (715)
56 3rc3_A ATP-dependent RNA helic 99.8 8.3E-19 2.8E-23 155.4 11.6 94 26-148 321-430 (677)
57 2oca_A DAR protein, ATP-depend 99.8 1.4E-18 4.9E-23 147.6 10.9 105 24-157 347-454 (510)
58 2v6i_A RNA helicase; membrane, 99.8 6.5E-19 2.2E-23 148.3 8.6 91 25-148 171-278 (431)
59 1gku_B Reverse gyrase, TOP-RG; 99.8 1.2E-18 4E-23 160.8 10.4 73 25-131 275-352 (1054)
60 3o8b_A HCV NS3 protease/helica 99.8 5E-19 1.7E-23 156.3 7.6 92 24-152 395-507 (666)
61 2p6r_A Afuhel308 helicase; pro 99.8 2.3E-18 7.8E-23 152.3 10.6 104 24-154 241-384 (702)
62 2eyq_A TRCF, transcription-rep 99.8 2.7E-18 9.1E-23 159.6 11.5 104 24-154 811-916 (1151)
63 2zj8_A DNA helicase, putative 99.8 1.8E-18 6.3E-23 153.3 9.7 104 24-154 236-383 (720)
64 1z3i_X Similar to RAD54-like; 99.7 2.1E-17 7.2E-22 145.4 13.8 100 24-148 415-514 (644)
65 4a4z_A Antiviral helicase SKI2 99.7 1.8E-17 6.1E-22 152.2 11.8 116 10-155 323-487 (997)
66 1gm5_A RECG; helicase, replica 99.7 1.4E-18 5E-23 156.0 2.5 106 22-154 575-693 (780)
67 3mwy_W Chromo domain-containin 99.7 6.8E-17 2.3E-21 145.2 12.8 112 8-147 558-669 (800)
68 4f92_B U5 small nuclear ribonu 99.5 8.5E-15 2.9E-19 140.3 8.5 100 22-148 314-459 (1724)
69 4f92_B U5 small nuclear ribonu 99.5 3.2E-14 1.1E-18 136.4 11.0 106 22-154 1152-1304(1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 1.3E-12 4.5E-17 120.4 9.5 104 24-155 536-706 (1038)
71 2vl7_A XPD; helicase, unknown 98.5 2.4E-07 8.2E-12 79.8 7.5 88 9-132 370-463 (540)
72 2ipc_A Preprotein translocase 98.0 2.8E-05 9.6E-10 70.8 10.1 44 3-46 421-464 (997)
73 3hgt_A HDA1 complex subunit 3; 98.0 7.1E-05 2.4E-09 61.0 11.6 101 8-144 111-217 (328)
74 4a15_A XPD helicase, ATP-depen 96.9 0.0015 5.3E-08 57.1 6.9 89 10-132 435-527 (620)
75 1gm5_A RECG; helicase, replica 96.3 0.019 6.7E-07 51.6 9.4 78 25-129 417-498 (780)
76 3oiy_A Reverse gyrase helicase 96.2 0.031 1.1E-06 45.4 9.6 84 23-130 62-148 (414)
77 3crv_A XPD/RAD3 related DNA he 95.6 0.064 2.2E-06 45.9 9.4 88 9-132 379-473 (551)
78 4ddu_A Reverse gyrase; topoiso 94.5 0.15 5E-06 47.5 9.1 84 23-130 119-205 (1104)
79 2eyq_A TRCF, transcription-rep 94.2 0.14 4.7E-06 47.9 8.2 77 24-127 651-731 (1151)
80 1oyw_A RECQ helicase, ATP-depe 94.0 0.32 1.1E-05 41.3 9.5 60 25-108 65-124 (523)
81 3ber_A Probable ATP-dependent 93.9 0.5 1.7E-05 35.8 9.6 85 14-127 101-192 (249)
82 1vec_A ATP-dependent RNA helic 93.5 0.46 1.6E-05 34.3 8.5 78 23-127 69-152 (206)
83 3gk5_A Uncharacterized rhodane 93.4 0.18 6.1E-06 33.6 5.6 39 22-61 52-90 (108)
84 1t6n_A Probable ATP-dependent 93.0 0.56 1.9E-05 34.4 8.5 77 25-127 82-164 (220)
85 2oxc_A Probable ATP-dependent 92.9 0.34 1.2E-05 36.1 7.1 78 22-127 89-172 (230)
86 2jtq_A Phage shock protein E; 92.6 0.48 1.6E-05 29.7 6.6 52 7-61 25-76 (85)
87 2v1x_A ATP-dependent DNA helic 92.5 0.29 9.8E-06 42.4 6.9 60 25-108 84-145 (591)
88 3hix_A ALR3790 protein; rhodan 92.1 0.23 7.9E-06 32.8 4.7 38 23-60 50-87 (106)
89 3foj_A Uncharacterized protein 91.6 0.2 6.8E-06 32.7 3.9 39 22-61 53-91 (100)
90 3bor_A Human initiation factor 91.5 0.24 8.3E-06 37.1 4.8 78 24-127 97-179 (237)
91 3g5j_A Putative ATP/GTP bindin 91.2 0.37 1.3E-05 32.6 5.1 35 26-61 90-125 (134)
92 2gxq_A Heat resistant RNA depe 91.0 0.9 3.1E-05 32.7 7.4 77 24-127 71-150 (207)
93 3eme_A Rhodanese-like domain p 91.0 0.2 6.8E-06 32.8 3.4 37 23-60 54-90 (103)
94 1tq1_A AT5G66040, senescence-a 90.9 0.22 7.4E-06 34.2 3.6 39 23-61 80-118 (129)
95 1xti_A Probable ATP-dependent 90.8 1.1 3.8E-05 35.4 8.3 79 23-127 74-158 (391)
96 3iuy_A Probable ATP-dependent 90.5 0.81 2.8E-05 33.7 6.8 77 24-127 93-173 (228)
97 1gmx_A GLPE protein; transfera 90.3 0.36 1.2E-05 31.8 4.2 39 23-61 56-94 (108)
98 1qde_A EIF4A, translation init 89.6 0.8 2.7E-05 33.5 6.1 78 22-127 79-161 (224)
99 3fe2_A Probable ATP-dependent 89.6 1.4 4.9E-05 32.8 7.7 77 24-128 101-183 (242)
100 3iwh_A Rhodanese-like domain p 89.5 0.3 1E-05 32.4 3.3 38 22-60 53-90 (103)
101 3ilm_A ALR3790 protein; rhodan 88.8 0.65 2.2E-05 32.4 4.8 39 22-60 53-91 (141)
102 2k0z_A Uncharacterized protein 88.4 0.77 2.6E-05 30.4 4.8 39 22-61 53-91 (110)
103 2l82_A Designed protein OR32; 88.2 2.4 8.1E-05 29.1 7.1 47 28-75 5-51 (162)
104 3ly5_A ATP-dependent RNA helic 87.9 2.9 0.0001 31.7 8.4 77 24-127 125-207 (262)
105 1wv9_A Rhodanese homolog TT165 87.8 0.59 2E-05 30.0 3.8 37 23-61 52-88 (94)
106 2fsx_A RV0390, COG0607: rhodan 87.5 0.56 1.9E-05 32.8 3.8 39 23-61 78-116 (148)
107 2pl3_A Probable ATP-dependent 87.2 2.3 7.9E-05 31.3 7.4 76 24-127 96-177 (236)
108 3d1p_A Putative thiosulfate su 87.2 0.58 2E-05 32.2 3.7 39 23-61 89-127 (139)
109 1qxn_A SUD, sulfide dehydrogen 86.9 0.46 1.6E-05 33.0 3.0 39 22-60 79-117 (137)
110 1s2m_A Putative ATP-dependent 86.8 3.1 0.00011 32.9 8.3 78 24-128 88-170 (400)
111 3flh_A Uncharacterized protein 86.8 0.6 2.1E-05 31.6 3.6 38 22-60 68-107 (124)
112 2hhg_A Hypothetical protein RP 86.7 0.45 1.5E-05 32.7 2.8 38 23-60 84-121 (139)
113 1vee_A Proline-rich protein fa 85.8 0.76 2.6E-05 31.6 3.7 39 23-61 72-110 (134)
114 2j0s_A ATP-dependent RNA helic 85.7 3.1 0.00011 33.1 7.9 78 23-127 103-185 (410)
115 1wp9_A ATP-dependent RNA helic 85.7 2.3 7.9E-05 34.0 7.1 45 24-68 51-98 (494)
116 3fmo_B ATP-dependent RNA helic 85.6 0.73 2.5E-05 36.1 3.9 77 23-129 160-243 (300)
117 3dkp_A Probable ATP-dependent 85.4 0.87 3E-05 33.9 4.2 89 14-128 87-182 (245)
118 1fuu_A Yeast initiation factor 85.0 3.7 0.00013 32.2 7.9 48 22-69 86-136 (394)
119 3nhv_A BH2092 protein; alpha-b 84.4 0.89 3E-05 31.8 3.5 38 23-61 70-109 (144)
120 1q0u_A Bstdead; DEAD protein, 84.2 0.91 3.1E-05 33.3 3.7 41 23-63 70-117 (219)
121 1wrb_A DJVLGB; RNA helicase, D 84.0 2.7 9.4E-05 31.3 6.4 76 25-127 100-180 (253)
122 2db3_A ATP-dependent RNA helic 84.0 3.6 0.00012 33.6 7.6 76 25-127 129-209 (434)
123 2lnd_A De novo designed protei 83.4 7 0.00024 25.3 8.8 64 7-75 36-101 (112)
124 2i4i_A ATP-dependent RNA helic 82.7 6.6 0.00023 31.1 8.5 75 26-127 102-181 (417)
125 4a2p_A RIG-I, retinoic acid in 81.0 4.1 0.00014 33.6 6.9 76 25-128 55-137 (556)
126 3tbk_A RIG-I helicase domain; 80.7 3.3 0.00011 34.1 6.2 40 25-65 52-95 (555)
127 3aay_A Putative thiosulfate su 80.2 5.1 0.00017 30.5 6.8 50 9-60 212-262 (277)
128 3eiq_A Eukaryotic initiation f 80.2 1.8 6E-05 34.4 4.2 79 23-127 106-189 (414)
129 4f67_A UPF0176 protein LPG2838 79.3 2.3 7.9E-05 33.1 4.5 39 23-61 179-217 (265)
130 1uar_A Rhodanese; sulfurtransf 78.8 4.5 0.00015 31.0 6.1 38 23-60 231-269 (285)
131 2z0m_A 337AA long hypothetical 78.2 8.5 0.00029 29.3 7.5 42 25-66 56-100 (337)
132 3i2v_A Adenylyltransferase and 78.1 1.1 3.6E-05 30.0 2.0 36 26-61 73-114 (127)
133 4a2q_A RIG-I, retinoic acid in 77.9 6.7 0.00023 34.7 7.6 41 25-66 296-340 (797)
134 1urh_A 3-mercaptopyruvate sulf 77.5 2.3 7.8E-05 32.6 4.0 39 23-61 228-266 (280)
135 1e0c_A Rhodanese, sulfurtransf 77.0 2.6 8.7E-05 32.1 4.1 39 22-60 220-258 (271)
136 1urh_A 3-mercaptopyruvate sulf 76.9 3.1 0.0001 31.9 4.6 51 8-60 71-122 (280)
137 1gku_B Reverse gyrase, TOP-RG; 76.9 4 0.00014 37.7 6.0 76 24-127 98-181 (1054)
138 3hzu_A Thiosulfate sulfurtrans 76.8 4.8 0.00016 31.7 5.8 50 9-60 97-147 (318)
139 2fsf_A Preprotein translocase 75.9 8.1 0.00028 35.1 7.5 43 24-67 114-160 (853)
140 1tf5_A Preprotein translocase 75.7 11 0.00039 34.1 8.4 43 24-67 123-169 (844)
141 2eg4_A Probable thiosulfate su 75.6 2.4 8.1E-05 31.6 3.5 39 22-61 181-219 (230)
142 1hv8_A Putative ATP-dependent 75.3 24 0.00081 27.0 9.5 44 23-66 72-118 (367)
143 3aay_A Putative thiosulfate su 75.3 6.8 0.00023 29.8 6.2 50 9-60 63-113 (277)
144 1e0c_A Rhodanese, sulfurtransf 75.1 5.3 0.00018 30.3 5.5 51 8-60 66-117 (271)
145 1uar_A Rhodanese; sulfurtransf 74.0 4.8 0.00016 30.8 5.0 49 10-60 66-115 (285)
146 1rhs_A Sulfur-substituted rhod 73.8 4.6 0.00016 31.2 4.9 39 23-61 238-276 (296)
147 3tg1_B Dual specificity protei 73.1 3.3 0.00011 29.0 3.6 35 25-60 93-136 (158)
148 3h11_B Caspase-8; cell death, 71.8 12 0.00041 29.0 6.9 51 23-75 15-86 (271)
149 3sqw_A ATP-dependent RNA helic 71.0 31 0.0011 29.0 9.8 77 25-127 95-181 (579)
150 2wlr_A Putative thiosulfate su 70.2 8.1 0.00028 31.6 5.8 52 8-61 188-239 (423)
151 3e4c_A Caspase-1; zymogen, inf 69.2 14 0.00047 29.2 6.7 47 26-74 61-118 (302)
152 1nkt_A Preprotein translocase 68.8 15 0.00052 33.6 7.6 44 24-68 151-198 (922)
153 3i5x_A ATP-dependent RNA helic 67.2 41 0.0014 27.9 9.7 77 25-127 146-232 (563)
154 3olh_A MST, 3-mercaptopyruvate 66.9 5.7 0.00019 31.0 4.0 51 9-61 240-290 (302)
155 3ntd_A FAD-dependent pyridine 66.0 4.9 0.00017 33.7 3.7 39 22-61 521-559 (565)
156 2eg4_A Probable thiosulfate su 65.9 9.6 0.00033 28.2 5.0 34 25-59 61-95 (230)
157 3h11_A CAsp8 and FADD-like apo 65.5 4.3 0.00015 31.7 3.1 50 24-75 42-91 (272)
158 2ipc_A Preprotein translocase 65.2 21 0.00072 32.9 7.8 58 9-68 105-166 (997)
159 3b6e_A Interferon-induced heli 65.1 9.2 0.00032 27.1 4.7 40 24-63 81-123 (216)
160 3hzu_A Thiosulfate sulfurtrans 65.0 6.2 0.00021 31.1 3.9 39 22-60 256-295 (318)
161 2ouc_A Dual specificity protei 64.9 3.3 0.00011 27.9 2.1 35 25-60 83-126 (142)
162 2h54_A Caspase-1; allosteric s 64.8 24 0.00082 25.6 6.9 48 25-74 43-101 (178)
163 1t3k_A Arath CDC25, dual-speci 64.2 7.8 0.00027 27.0 4.0 39 23-61 83-130 (152)
164 4a2w_A RIG-I, retinoic acid in 63.6 8.1 0.00028 35.1 4.9 40 25-65 296-339 (936)
165 2ykg_A Probable ATP-dependent 63.4 7.1 0.00024 33.5 4.3 39 26-64 62-103 (696)
166 3ipz_A Monothiol glutaredoxin- 62.5 29 0.00098 22.5 9.0 52 12-68 8-65 (109)
167 1rhs_A Sulfur-substituted rhod 62.1 10 0.00034 29.3 4.6 50 9-60 78-130 (296)
168 2dko_A Caspase-3; low barrier 61.8 25 0.00085 24.6 6.3 49 25-75 16-78 (146)
169 3pey_A ATP-dependent RNA helic 61.6 18 0.0006 28.1 6.1 74 23-127 73-151 (395)
170 3s5u_A Putative uncharacterize 61.4 22 0.00076 26.8 6.3 52 6-60 144-200 (220)
171 1okg_A Possible 3-mercaptopyru 61.1 11 0.00038 30.5 4.8 50 9-61 81-132 (373)
172 4gl2_A Interferon-induced heli 60.4 2.6 8.9E-05 36.3 1.0 42 25-66 56-100 (699)
173 2fp3_A Caspase NC; apoptosis, 60.0 24 0.00082 28.0 6.6 50 24-75 60-121 (316)
174 1m72_A Caspase-1; caspase, cys 59.8 27 0.00093 27.0 6.7 48 26-75 33-93 (272)
175 3qhq_A CSN2, SAG0897 family cr 59.8 21 0.00071 27.1 5.9 51 6-59 144-199 (229)
176 1yt8_A Thiosulfate sulfurtrans 59.3 12 0.00041 31.6 5.0 38 23-60 61-98 (539)
177 3p45_A Caspase-6; protease, hu 58.0 37 0.0013 24.7 6.8 49 25-75 44-106 (179)
178 2fwr_A DNA repair protein RAD2 57.4 20 0.0007 29.0 5.9 36 25-61 133-169 (472)
179 2fz4_A DNA repair protein RAD2 57.2 28 0.00096 25.8 6.3 35 25-60 133-168 (237)
180 2j32_A Caspase-3; Pro-caspase3 57.1 29 0.001 26.4 6.4 49 25-75 16-78 (250)
181 3od5_A Caspase-6; caspase doma 56.7 32 0.0011 26.7 6.6 50 24-75 20-83 (278)
182 3zyw_A Glutaredoxin-3; metal b 56.6 38 0.0013 22.1 8.0 52 12-68 6-63 (111)
183 3olh_A MST, 3-mercaptopyruvate 56.0 14 0.00048 28.7 4.5 52 7-60 91-145 (302)
184 3sxu_A DNA polymerase III subu 55.7 22 0.00076 25.0 5.1 37 9-48 26-62 (150)
185 3ics_A Coenzyme A-disulfide re 55.7 9.8 0.00034 32.2 3.8 39 22-61 538-576 (588)
186 2nn3_C Caspase-1; cysteine pro 55.4 40 0.0014 26.6 7.1 49 25-75 60-121 (310)
187 1yt8_A Thiosulfate sulfurtrans 55.1 12 0.0004 31.7 4.2 48 9-60 418-465 (539)
188 2wlr_A Putative thiosulfate su 54.9 11 0.00038 30.7 3.9 38 23-60 356-393 (423)
189 3dmn_A Putative DNA helicase; 54.4 37 0.0013 23.9 6.3 25 100-131 100-124 (174)
190 1qtn_A Caspase-8; apoptosis, d 53.5 58 0.002 23.2 7.2 50 24-75 22-92 (164)
191 2oca_A DAR protein, ATP-depend 53.2 21 0.00071 29.3 5.4 39 26-64 158-199 (510)
192 4ehd_A Caspase-3; caspase, apo 52.0 38 0.0013 26.2 6.4 49 25-75 44-106 (277)
193 3tp9_A Beta-lactamase and rhod 51.9 11 0.00037 31.1 3.4 40 22-61 424-463 (474)
194 3sir_A Caspase; hydrolase; 2.6 51.8 23 0.00079 27.2 5.1 48 26-75 21-81 (259)
195 1c25_A CDC25A; hydrolase, cell 50.3 12 0.00041 25.9 3.0 38 24-61 86-136 (161)
196 1okg_A Possible 3-mercaptopyru 50.2 10 0.00034 30.7 2.8 38 25-62 246-283 (373)
197 2yan_A Glutaredoxin-3; oxidore 49.7 47 0.0016 21.0 8.1 57 11-72 6-68 (105)
198 1nw9_B Caspase 9, apoptosis-re 49.4 48 0.0017 25.5 6.6 50 24-75 20-83 (277)
199 1pyo_A Caspase-2; apoptosis, c 49.3 61 0.0021 23.1 6.7 49 24-74 32-94 (167)
200 2p6r_A Afuhel308 helicase; pro 49.0 22 0.00076 30.8 5.0 37 25-62 68-107 (702)
201 3fht_A ATP-dependent RNA helic 47.6 18 0.00062 28.3 4.0 38 23-60 93-134 (412)
202 3gr1_A Protein PRGH; type III 44.0 1E+02 0.0035 23.3 8.0 49 24-75 25-74 (227)
203 3utn_X Thiosulfate sulfurtrans 43.6 39 0.0013 26.9 5.3 52 9-60 255-310 (327)
204 3fho_A ATP-dependent RNA helic 43.2 41 0.0014 27.8 5.7 27 22-48 186-212 (508)
205 3fmp_B ATP-dependent RNA helic 41.9 16 0.00054 29.8 2.8 22 26-47 163-184 (479)
206 2j6p_A SB(V)-AS(V) reductase; 41.9 19 0.00064 24.9 2.9 37 25-61 67-111 (152)
207 1f1j_A Caspase-7 protease; cas 41.7 50 0.0017 26.0 5.7 48 26-75 70-131 (305)
208 2wci_A Glutaredoxin-4; redox-a 41.6 81 0.0028 21.4 8.3 44 26-70 35-84 (135)
209 3l9o_A ATP-dependent RNA helic 41.4 47 0.0016 30.9 6.2 37 24-61 226-262 (1108)
210 4dik_A Flavoprotein; TM0755, e 40.9 1.3E+02 0.0045 24.4 8.3 66 8-74 248-319 (410)
211 3gx8_A Monothiol glutaredoxin- 40.9 76 0.0026 20.9 8.9 52 12-68 6-66 (121)
212 4a4z_A Antiviral helicase SKI2 40.9 43 0.0015 30.7 5.8 38 24-61 81-119 (997)
213 3gr0_A Protein PRGH; type III 40.8 1.1E+02 0.0037 22.7 7.1 48 24-74 25-73 (197)
214 2l82_A Designed protein OR32; 40.6 84 0.0029 21.3 7.8 64 9-75 62-128 (162)
215 2lci_A Protein OR36; structura 40.4 78 0.0027 20.9 10.2 61 8-74 35-95 (134)
216 3op3_A M-phase inducer phospha 40.3 21 0.0007 26.7 3.1 33 28-60 127-170 (216)
217 1v5x_A PRA isomerase, phosphor 40.2 98 0.0034 22.7 6.8 52 8-65 39-90 (203)
218 4fn4_A Short chain dehydrogena 39.7 1.1E+02 0.0039 23.0 7.3 41 25-66 31-71 (254)
219 2ql9_A Caspase-7; cysteine pro 39.6 71 0.0024 23.0 5.8 48 26-75 45-106 (173)
220 2vzf_A NADH-dependent FMN redu 39.5 99 0.0034 21.9 7.2 18 126-143 80-97 (197)
221 1u6t_A SH3 domain-binding glut 39.3 40 0.0014 22.9 4.1 41 31-72 12-52 (121)
222 1qb0_A Protein (M-phase induce 39.1 24 0.00084 25.8 3.3 37 24-60 108-157 (211)
223 2zj8_A DNA helicase, putative 36.5 24 0.00081 30.7 3.2 39 25-64 68-109 (720)
224 3hjh_A Transcription-repair-co 35.5 13 0.00045 31.3 1.4 63 25-127 382-444 (483)
225 2q62_A ARSH; alpha/beta, flavo 35.1 98 0.0034 23.3 6.2 78 25-144 34-127 (247)
226 2wem_A Glutaredoxin-related pr 34.4 99 0.0034 20.4 7.4 43 25-68 19-68 (118)
227 1nsj_A PRAI, phosphoribosyl an 34.0 1.1E+02 0.0038 22.4 6.2 51 8-64 40-90 (205)
228 3r2u_A Metallo-beta-lactamase 33.9 8.6 0.00029 31.9 0.0 39 23-61 423-461 (466)
229 3hjh_A Transcription-repair-co 33.1 1.2E+02 0.0042 25.3 7.0 51 25-75 39-101 (483)
230 1c4o_A DNA nucleotide excision 33.0 1.7E+02 0.0057 25.3 8.1 51 25-75 53-129 (664)
231 1qle_D Cytochrome AA3, ccytoch 33.0 20 0.00069 20.0 1.5 20 56-75 4-23 (43)
232 2a2k_A M-phase inducer phospha 32.6 26 0.00088 24.6 2.4 37 24-60 88-137 (175)
233 3o8b_A HCV NS3 protease/helica 32.2 35 0.0012 30.0 3.6 71 25-130 257-327 (666)
234 3jx9_A Putative phosphoheptose 31.7 37 0.0013 24.4 3.1 39 22-61 75-116 (170)
235 2vsw_A Dual specificity protei 30.8 8.5 0.00029 26.5 -0.5 39 23-61 76-122 (153)
236 3mwy_W Chromo domain-containin 30.0 1.2E+02 0.0042 26.7 6.8 42 22-64 283-325 (800)
237 1wik_A Thioredoxin-like protei 29.4 1.1E+02 0.0038 19.4 7.9 45 25-70 14-64 (109)
238 3s5j_B Ribose-phosphate pyroph 29.1 66 0.0022 25.7 4.4 59 23-108 211-274 (326)
239 2j48_A Two-component sensor ki 28.8 97 0.0033 18.5 5.4 16 129-144 100-115 (119)
240 1rif_A DAR protein, DNA helica 28.0 52 0.0018 24.6 3.6 35 26-60 158-195 (282)
241 3f4a_A Uncharacterized protein 27.8 16 0.00054 26.0 0.5 36 26-61 105-147 (169)
242 3dah_A Ribose-phosphate pyroph 26.9 1.6E+02 0.0053 23.3 6.3 59 23-108 214-277 (319)
243 2ohh_A Type A flavoprotein FPR 26.2 2.3E+02 0.0079 22.0 8.4 19 126-144 318-336 (404)
244 1t1v_A SH3BGRL3, SH3 domain-bi 25.9 1.1E+02 0.0039 18.6 4.5 36 36-72 19-54 (93)
245 2va8_A SSO2462, SKI2-type heli 25.5 59 0.002 28.1 3.8 38 25-63 75-115 (715)
246 2q9u_A A-type flavoprotein; fl 25.0 2.5E+02 0.0086 22.0 8.2 18 127-144 319-336 (414)
247 3mwd_B ATP-citrate synthase; A 24.8 1.5E+02 0.005 23.6 5.8 50 25-75 80-130 (334)
248 8tfv_A Protein (thanatin); bac 23.9 19 0.00064 16.6 0.2 7 29-35 8-14 (21)
249 1b4b_A Arginine repressor; cor 23.2 94 0.0032 18.7 3.5 23 25-47 47-69 (71)
250 3zy2_A Putative GDP-fucose pro 23.1 94 0.0032 25.3 4.3 63 5-75 261-323 (362)
251 1hzm_A Dual specificity protei 22.9 33 0.0011 23.2 1.5 38 23-61 90-137 (154)
252 4g81_D Putative hexonate dehyd 22.9 2.2E+02 0.0075 21.4 6.3 47 25-72 33-80 (255)
253 3lrt_A Ribose-phosphate pyroph 22.3 2.1E+02 0.0072 22.1 6.2 46 23-68 201-251 (286)
254 4b3f_X DNA-binding protein smu 22.0 1.9E+02 0.0064 24.7 6.3 44 9-56 220-263 (646)
255 3tp9_A Beta-lactamase and rhod 21.6 1.3E+02 0.0046 24.4 5.2 42 10-55 314-355 (474)
256 2d7d_A Uvrabc system protein B 21.6 1.8E+02 0.0062 25.1 6.2 51 25-75 57-133 (661)
257 1mio_B Nitrogenase molybdenum 21.4 3.3E+02 0.011 22.2 8.1 40 23-64 310-350 (458)
258 3hly_A Flavodoxin-like domain; 21.4 2E+02 0.0068 19.6 5.6 60 12-73 69-135 (161)
259 2b4a_A BH3024; flavodoxin-like 21.1 1.6E+02 0.0056 18.5 9.8 45 99-150 88-134 (138)
260 2xgj_A ATP-dependent RNA helic 21.0 70 0.0024 29.4 3.6 36 25-61 129-164 (1010)
261 1e5d_A Rubredoxin\:oxygen oxid 20.9 3E+02 0.01 21.4 8.9 14 130-143 318-331 (402)
262 3o74_A Fructose transport syst 20.6 1.9E+02 0.0065 20.7 5.4 33 29-61 99-131 (272)
263 2ct6_A SH3 domain-binding glut 20.6 1.2E+02 0.0042 19.4 3.9 45 26-71 8-59 (111)
264 1u9y_A RPPK;, ribose-phosphate 20.6 2.4E+02 0.0084 21.5 6.2 42 23-64 203-249 (284)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=1.5e-28 Score=181.77 Aligned_cols=119 Identities=21% Similarity=0.396 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|+++
T Consensus 20 ~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g------------- 84 (163)
T 2hjv_A 20 ENKFSLLKDVLM-TENPDSCIIFCRTKEHVNQLTDELDDLG-YPCDKIHGGMIQEDRFDVMNEFKRG------------- 84 (163)
T ss_dssp GGHHHHHHHHHH-HHCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHH-hcCCCcEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 334444444554 3456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 85 ----------~~~vlv~T~~----~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 140 (163)
T 2hjv_A 85 ----------EYRYLVATDV----AARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVT 140 (163)
T ss_dssp ----------SCSEEEECGG----GTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEEC
T ss_pred ----------CCeEEEECCh----hhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEec
Confidence 8999999999 99999999999999999999999999999999765 467776653
No 2
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=2.1e-28 Score=182.92 Aligned_cols=117 Identities=14% Similarity=0.217 Sum_probs=103.6
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|++|
T Consensus 18 K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~hg~~~~~~r~~~~~~f~~g--------------- 80 (172)
T 1t5i_A 18 KNRKLFDLLD-VLEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF--------------- 80 (172)
T ss_dssp HHHHHHHHHH-HSCCSSEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHH-hCCCCcEEEEECCHHHHHHHHHHHHhcC-CCEEEEECCCCHHHHHHHHHHHHCC---------------
Confidence 3344444554 4456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccC--CCCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLA--AGTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~--~~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++|||||+|+++..|+||+||++| +.|.++.|++
T Consensus 81 --------~~~vLvaT~~----~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~ 136 (172)
T 1t5i_A 81 --------QRRILVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 136 (172)
T ss_dssp --------SCSEEEESSC----CSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEEC
T ss_pred --------CCcEEEECCc----hhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEc
Confidence 8999999999 9999999999999999999999999999999955 4578887764
No 3
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.96 E-value=3.3e-28 Score=187.50 Aligned_cols=117 Identities=22% Similarity=0.330 Sum_probs=103.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|.++++.|++|
T Consensus 18 k~~~l~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~r~~~~~~f~~g--------------- 80 (212)
T 3eaq_A 18 RLEVLSDLLY-VASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDLSQGERERVLGAFRQG--------------- 80 (212)
T ss_dssp HHHHHHHHHH-HHCCSCEEEECSSHHHHHHHHHHHHHHT-CCEEEECSSSCHHHHHHHHHHHHSS---------------
T ss_pred HHHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHCC---------------
Confidence 3333333444 3446899999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++|||||+|+++..|+||+||+||. .|.++.|++
T Consensus 81 --------~~~vlvaT~~----~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~ 136 (212)
T 3eaq_A 81 --------EVRVLVATDV----AARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYG 136 (212)
T ss_dssp --------SCCEEEECTT----TTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEEC
T ss_pred --------CCeEEEecCh----hhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEc
Confidence 8999999999 99999999999999999999999999999999776 477777764
No 4
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=178.67 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. .....++||||++++.++.+++.|...+ +.+..+||+|++++|..++++|++|
T Consensus 18 ~~~K~~~L~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~R~~~~~~f~~g------------ 83 (175)
T 2rb4_A 18 RKDKYQALCNIYG-SITIGQAIIFCQTRRNAKWLTVEMIQDG-HQVSLLSGELTVEQRASIIQRFRDG------------ 83 (175)
T ss_dssp HHHHHHHHHHHHT-TSCCSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECSSCCHHHHHHHHHHHHTT------------
T ss_pred hHhHHHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHHcC------------
Confidence 3435555555666 4567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC------CChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P------~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++|||||+| .++.+|+||+||++|. .|.++.|++
T Consensus 84 -----------~~~vLvaT~~----~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~ 145 (175)
T 2rb4_A 84 -----------KEKVLITTNV----CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIE 145 (175)
T ss_dssp -----------SCSEEEECCS----CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEEC
T ss_pred -----------CCeEEEEecc----hhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 8999999999 9999999999999999999 8999999999999764 567776653
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=1.5e-27 Score=176.60 Aligned_cols=117 Identities=26% Similarity=0.415 Sum_probs=102.4
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|+++
T Consensus 17 K~~~l~~ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g--------------- 79 (165)
T 1fuk_A 17 KYECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG--------------- 79 (165)
T ss_dssp HHHHHHHHHH-HTTCSCEEEEESSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHH-hCCCCCEEEEECCHHHHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHHHHcC---------------
Confidence 4444444554 3456899999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 80 --------~~~vlv~T~~----~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 80 --------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp --------SCSEEEEEGG----GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred --------CCEEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 8999999999 99999999999999999999999999999999765 578877764
No 6
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=180.73 Aligned_cols=119 Identities=19% Similarity=0.290 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+++..|++ ++....++.++||||++++.++.+++.|...+ +.+..+||+|++++|.+++++|+.|
T Consensus 31 ~K~~~L~~-ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~r~~~~~~f~~g------------- 95 (185)
T 2jgn_A 31 DKRSFLLD-LLNATGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSG------------- 95 (185)
T ss_dssp GHHHHHHH-HHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT-CCEEEEC--------CHHHHHHHHT-------------
T ss_pred HHHHHHHH-HHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC-CceEEEeCCCCHHHHHHHHHHHHcC-------------
Confidence 33333333 44434467899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 96 ----------~~~vLvaT~~----~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 151 (185)
T 2jgn_A 96 ----------KSPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 151 (185)
T ss_dssp ----------SSSEEEEEC----------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEEC
T ss_pred ----------CCeEEEEcCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEc
Confidence 8999999999 99999999999999999999999999999999775 477776653
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.7e-27 Score=181.20 Aligned_cols=119 Identities=22% Similarity=0.355 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
.+.+.+.|..++. . .+.++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|+++
T Consensus 39 ~~~K~~~L~~~l~-~-~~~~~lVF~~~~~~~~~l~~~L~~~g-~~~~~lhg~~~~~~R~~~l~~F~~g------------ 103 (191)
T 2p6n_A 39 EEAKMVYLLECLQ-K-TPPPVLIFAEKKADVDAIHEYLLLKG-VEAVAIHGGKDQEERTKAIEAFREG------------ 103 (191)
T ss_dssp GGGHHHHHHHHHT-T-SCSCEEEECSCHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHHT------------
T ss_pred hHHHHHHHHHHHH-h-CCCCEEEEECCHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC------------
Confidence 3333444444554 2 24689999999999999999999987 7999999999999999999999998
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|++++++|||||+|+++..|+||+||++|. .|.+++|++
T Consensus 104 -----------~~~vLvaT~~----~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 104 -----------KKDVLVATDV----ASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp -----------SCSEEEECHH----HHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred -----------CCEEEEEcCc----hhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 8999999999 99999999999999999999999999999999665 588888764
No 8
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=5.8e-27 Score=189.96 Aligned_cols=117 Identities=20% Similarity=0.320 Sum_probs=102.0
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.|..++. ...+.++||||++++.++.+++.|...+ +.+..+||+|++++|.++++.|++|
T Consensus 15 K~~~L~~ll~-~~~~~~~LVF~~t~~~~~~l~~~L~~~g-~~~~~lhg~l~~~~r~~~~~~f~~g--------------- 77 (300)
T 3i32_A 15 RLEVLSDLLY-VASPDRAMVFTRTKAETEEIAQGLLRLG-HPAQALHGDMSQGERERVMGAFRQG--------------- 77 (300)
T ss_dssp HHHHHHHHHH-HHCCSSEEEECSSHHHHHHHHHHHHTTT-CCEEEECSCCCTHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHH-hcCCCCEEEEECCHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhcC---------------
Confidence 3344444444 3337899999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|++++++|||||+|+++..|+||+||+||. .|.++.|++
T Consensus 78 --------~~~vLVaT~v----a~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~ 133 (300)
T 3i32_A 78 --------EVRVLVATDV----AARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYG 133 (300)
T ss_dssp --------SCCEEEECST----TTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEEC
T ss_pred --------CceEEEEech----hhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeC
Confidence 8999999999 99999999999999999999999999999999775 588887764
No 9
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.88 E-value=6.4e-28 Score=179.55 Aligned_cols=118 Identities=16% Similarity=0.305 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.++|..++. ...+.++||||++++.++.+++.|+..+ +.+..+||+|++++|.+++++|++|
T Consensus 15 ~~k~~~l~~ll~-~~~~~~~iVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~r~~~~~~f~~g------------- 79 (170)
T 2yjt_D 15 EHKTALLVHLLK-QPEATRSIVFVRKRERVHELANWLREAG-INNCYLEGEMVQGKRNEAIKRLTEG------------- 79 (170)
Confidence 445555555655 4456899999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|+
T Consensus 80 ----------~~~vLvaT~~----~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 80 ----------RVNVLVATDV----AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 8999999999 99999999999999999999999999999999665 46666654
No 10
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.93 E-value=2.1e-25 Score=187.55 Aligned_cols=103 Identities=20% Similarity=0.341 Sum_probs=96.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVV 105 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~ 105 (159)
.++||||++++.++.+++.|++.+ +.+..+||++++++|.+++++|++| +.+||||
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~l~~F~~g-----------------------~~~vLva 356 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEKE-FPTTSIHGDRLQSQREQALRDFKNG-----------------------SMKVLIA 356 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCEEEESTTSCHHHHHHHHHHHHTS-----------------------SCSEEEE
T ss_pred CCEEEEEeCcHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHHHcC-----------------------CCcEEEE
Confidence 459999999999999999999998 6999999999999999999999998 8999999
Q ss_pred ecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 106 TDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 106 Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
|++ ++||+|++++++|||||+|+++++|+||+||+||. .|.+++|++
T Consensus 357 T~v----~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~ 405 (434)
T 2db3_A 357 TSV----ASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFD 405 (434)
T ss_dssp CGG----GTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred chh----hhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEe
Confidence 999 99999999999999999999999999999999665 578887764
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=179.30 Aligned_cols=117 Identities=20% Similarity=0.309 Sum_probs=102.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
.+.+..++.....+.++||||++++.++.+++.|.+.+ +.+..+||++++++|.+++++|+++
T Consensus 263 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g---------------- 325 (417)
T 2i4i_A 263 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG-YACTSIHGDRSQRDREEALHQFRSG---------------- 325 (417)
T ss_dssp HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-CCeeEecCCCCHHHHHHHHHHHHcC----------------
Confidence 33344455434567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.|++
T Consensus 326 -------~~~vlvaT~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (417)
T 2i4i_A 326 -------KSPILVATAV----AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 381 (417)
T ss_dssp -------SSCEEEECHH----HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEEC
T ss_pred -------CCCEEEECCh----hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEc
Confidence 8999999999 999999999999999999999999999999997764 67766653
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=8.1e-24 Score=172.37 Aligned_cols=120 Identities=21% Similarity=0.356 Sum_probs=106.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQ 86 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~ 86 (159)
......+.+..+.. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|.+++++|++|
T Consensus 226 ~~~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g----------- 292 (395)
T 3pey_A 226 NEADKFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEG-HEVSILHGDLQTQERDRLIDDFREG----------- 292 (395)
T ss_dssp SHHHHHHHHHHHHT-TTTSSEEEEECSCHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTT-----------
T ss_pred chHHHHHHHHHHHH-hccCCCEEEEeCCHHHHHHHHHHHHhcC-CcEEEeCCCCCHHHHHHHHHHHHCC-----------
Confidence 34455566666665 5567899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcccCCC--CeEEEEE
Q 031433 87 SGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+ ++..|+||+||++|.+ |.++.|+
T Consensus 293 ------------~~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 293 ------------RSKVLITTNV----LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp ------------SCCEEEECGG----GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ------------CCCEEEECCh----hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 8999999999 99999999999999999999 9999999999997764 5666554
No 13
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.91 E-value=3.8e-24 Score=176.51 Aligned_cols=105 Identities=24% Similarity=0.452 Sum_probs=97.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...++||||++++.++.+++.|++.+ +.+..+||++++++|.+++++|++| +.+||
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g-----------------------~~~vl 330 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREAN-FTVSSMHGDMPQKERESIMKEFRSG-----------------------ASRVL 330 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHHT-----------------------SSCEE
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCC-CceEEeeCCCCHHHHHHHHHHHHCC-----------------------CCCEE
Confidence 34799999999999999999999998 6999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
|||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 331 v~T~~----~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 331 ISTDV----WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp EECGG----GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred EECCh----hhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 99999 99999999999999999999999999999999664 577777654
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.91 E-value=1.1e-23 Score=184.06 Aligned_cols=116 Identities=19% Similarity=0.334 Sum_probs=102.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+..+++ ++.....+.++||||+|++.++.+++.|+..+ +.+..+||+|++++|.+++++|+.+
T Consensus 253 ~~~~l~~-~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g-~~~~~~h~~l~~~~R~~~~~~F~~g-------------- 316 (591)
T 2v1x_A 253 FIEDIVK-LINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG-IHAGAYHANLEPEDKTTVHRKWSAN-------------- 316 (591)
T ss_dssp HHHHHHH-HHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHH-HHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcC--------------
Confidence 3344444 44324467899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
+.+|||||++ +++|||+|+|++|||||+|.+++.|+||+||+||.+..+..+
T Consensus 317 ---------~~~VlVAT~a----~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 317 ---------EIQVVVATVA----FGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp ---------SSSEEEECTT----SCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEE
T ss_pred ---------CCeEEEEech----hhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEE
Confidence 8999999999 999999999999999999999999999999998876444433
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=8.7e-24 Score=181.75 Aligned_cols=107 Identities=20% Similarity=0.345 Sum_probs=98.7
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.++||||+|++.++.+++.|++. + +.+..+||+|++++|.+++++|+++
T Consensus 336 ~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~-~~v~~~h~~~~~~~R~~~~~~f~~g----------------------- 391 (563)
T 3i5x_A 336 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNKRTSLVKRFKKD----------------------- 391 (563)
T ss_dssp TTTCCEEEEECSCHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHHHHHHHHHHHHC-----------------------
T ss_pred cCCCCcEEEEcCcHHHHHHHHHHHHHhccCC-ceEEEecCCCCHHHHHHHHHHHhcC-----------------------
Confidence 466789999999999999999999986 5 6999999999999999999999998
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|.++..|+||+||++|.+ |.++.|++
T Consensus 392 ~~~vLvaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 392 ESGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp SSEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred CCCEEEEcch----hhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 8999999999 999999999999999999999999999999997765 66666653
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.91 E-value=8.3e-24 Score=173.66 Aligned_cols=118 Identities=19% Similarity=0.326 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+...+..+.. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|.+++++|++|
T Consensus 251 ~~~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g------------- 315 (412)
T 3fht_A 251 DEKFQALCNLYG-AITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREG------------- 315 (412)
T ss_dssp HHHHHHHHHHHH-HHSSSEEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHh-hcCCCCEEEEeCCHHHHHHHHHHHHhCC-CeEEEecCCCCHHHHHHHHHHHHCC-------------
Confidence 334444444444 3446799999999999999999999997 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+ +...|+||+||++|. .|.++.++
T Consensus 316 ----------~~~vlv~T~~----~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 316 ----------KEKVLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp ----------SCSEEEECGG----GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ----------CCcEEEEcCc----cccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEE
Confidence 8999999999 99999999999999999995 668999999999775 46666655
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.91 E-value=1.6e-23 Score=180.49 Aligned_cols=104 Identities=20% Similarity=0.383 Sum_probs=96.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++++||||+|++.++.+++.|++.+ +.+..+||+|++++|.+++++|+++ +.+|
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g-~~~~~~h~~l~~~~R~~~~~~f~~g-----------------------~~~v 289 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKG-ISAAAYHAGLENNVRADVQEKFQRD-----------------------DLQI 289 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------------------SCSE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCC-CCEEEecCCCCHHHHHHHHHHHHcC-----------------------CCeE
Confidence 356899999999999999999999998 7999999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDI 154 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~ 154 (159)
||||++ +++|+|+|+|++|||||+|++++.|+||+||+||.+ |.++.|
T Consensus 290 lVaT~a----~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 290 VVATVA----FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp EEECTT----SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred EEEech----hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 999999 999999999999999999999999999999998765 444444
No 18
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.91 E-value=1.4e-23 Score=181.88 Aligned_cols=107 Identities=20% Similarity=0.345 Sum_probs=98.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.++||||+|++.++.+++.|++. + +.+..+||+|++++|.+++++|+++
T Consensus 285 ~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~-~~v~~~hg~~~~~~R~~~~~~F~~g----------------------- 340 (579)
T 3sqw_A 285 RDSNYKAIIFAPTVKFTSFLCSILKNEFKKD-LPILEFHGKITQNKRTSLVKRFKKD----------------------- 340 (579)
T ss_dssp TTTCCEEEEECSSHHHHHHHHHHHHHHHTTT-SCEEEESTTSCHHHHHHHHHHHHHC-----------------------
T ss_pred cCCCCcEEEECCcHHHHHHHHHHHHHhhcCC-CcEEEecCCCCHHHHHHHHHHhhcC-----------------------
Confidence 466789999999999999999999976 5 6999999999999999999999998
Q ss_pred ceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 99 KSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 99 ~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|.++..|+||+||++|.+ |.++.|++
T Consensus 341 ~~~vLVaT~~----~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 396 (579)
T 3sqw_A 341 ESGILVCTDV----GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 396 (579)
T ss_dssp SSEEEEECGG----GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred CCeEEEEcch----hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEc
Confidence 8999999999 999999999999999999999999999999997765 66666553
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.91 E-value=1.6e-23 Score=172.12 Aligned_cols=115 Identities=23% Similarity=0.433 Sum_probs=101.8
Q ss_pred HHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
...+..++. .....++||||++++.++.+++.|++.+ +.+..+||+|++++|..+++.|+++
T Consensus 246 ~~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g---------------- 307 (400)
T 1s2m_A 246 LHCLNTLFS-KLQINQAIIFCNSTNRVELLAKKITDLG-YSCYYSHARMKQQERNKVFHEFRQG---------------- 307 (400)
T ss_dssp HHHHHHHHH-HSCCSEEEEECSSHHHHHHHHHHHHHHT-CCEEEECTTSCHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHh-hcCCCcEEEEEecHHHHHHHHHHHHhcC-CCeEEecCCCCHHHHHHHHHHHhcC----------------
Confidence 333444444 3456799999999999999999999988 6999999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.|+
T Consensus 308 -------~~~vLv~T~~----~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 308 -------KVRTLVCSDL----LTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp -------SSSEEEESSC----SSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred -------CCcEEEEcCc----cccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 8999999999 999999999999999999999999999999997764 6666665
No 20
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.90 E-value=4.6e-24 Score=187.45 Aligned_cols=120 Identities=14% Similarity=0.198 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------CCccEEEeecC--------CCHHHHHHHHHHHh
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSD--------LAETERTLILEEFR 73 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------~~i~~~~l~~~--------~~~~~R~~~l~~F~ 73 (159)
.+.+.++|.........+.++||||+++++++.+++.|++. | +.+..+||+ |++++|.+++++|+
T Consensus 383 ~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g-~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~ 461 (699)
T 4gl2_A 383 LTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVG-VKAHHLIGAGHSSEFKPMTQNEQKEVISKFR 461 (699)
T ss_dssp SSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccC-cceEEEECCCCccCCCCCCHHHHHHHHHHHh
Confidence 34455566554442222799999999999999999999987 6 799999999 99999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEE
Q 031433 74 HTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSD 153 (159)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~ 153 (159)
+| +.+|||||++ +++|||+|+|++|||||+|+|+..|+||+||+ |++|.++.
T Consensus 462 ~g-----------------------~~~VLVaT~~----~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRA-rr~g~~~~ 513 (699)
T 4gl2_A 462 TG-----------------------KINLLIATTV----AEEGLDIKECNIVIRYGLVTNEIAMVQARGRA-RADESTYV 513 (699)
T ss_dssp C--------------------------CCSEEECS----CCTTSCCCSCCCCEEESCCCCHHHHHHHHTTS-CSSSCEEE
T ss_pred cC-----------------------CCcEEEEccc----cccCCccccCCEEEEeCCCCCHHHHHHHcCCC-CCCCceEE
Confidence 98 8999999999 99999999999999999999999999999996 55566666
Q ss_pred EEE
Q 031433 154 IIL 156 (159)
Q Consensus 154 ~v~ 156 (159)
+++
T Consensus 514 l~~ 516 (699)
T 4gl2_A 514 LVA 516 (699)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.90 E-value=2.3e-24 Score=182.92 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC-----------CccEEEeecCCCHHHHHHHHHHHhc-
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA-----------DISFSSLHSDLAETERTLILEEFRH- 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~-----------~i~~~~l~~~~~~~~R~~~l~~F~~- 74 (159)
+.+.+.++|..+.. ..++.++||||+++++++.+++.|+..+ +.....+||+|++++|.+++++|++
T Consensus 372 k~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 372 KLRDLYLVLQEEYH-LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 44566666666554 4567999999999999999999999763 1244555669999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCCCeEEEE
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
| +.+|||||++ +++|+|+|+|++|||||+|+++..|+||+||+..++|.++.|
T Consensus 451 g-----------------------~~~vLvaT~~----~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l 503 (555)
T 3tbk_A 451 G-----------------------DNNILIATSV----ADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLL 503 (555)
T ss_dssp ------------------------CCSEEEECCC----TTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEE
T ss_pred C-----------------------CeeEEEEcch----hhcCCccccCCEEEEeCCCCCHHHHHHhcCcCcCCCceEEEE
Confidence 7 8999999999 999999999999999999999999999999943345777776
Q ss_pred EE
Q 031433 155 IL 156 (159)
Q Consensus 155 v~ 156 (159)
++
T Consensus 504 ~~ 505 (555)
T 3tbk_A 504 TS 505 (555)
T ss_dssp ES
T ss_pred Ec
Confidence 53
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.90 E-value=2.7e-23 Score=169.76 Aligned_cols=106 Identities=14% Similarity=0.245 Sum_probs=98.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..+.++||||++++.++.+++.|.+.+ +.+..+||++++++|.+++++|+++ +.+|
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~v 303 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQN-FPAIAIHRGMPQEERLSRYQQFKDF-----------------------QRRI 303 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHTT-----------------------CCSE
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCcE
Confidence 356899999999999999999999998 6999999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.+++
T Consensus 304 lv~T~~----~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 304 LVATNL----FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp EEESCC----CSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred EEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 999999 99999999999999999999999999999999775 477777653
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.90 E-value=5e-24 Score=181.34 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=61.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------------CCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------------~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
+.+.+.++|..... ...+.++||||+++++++.+++.|++. | .....+||+|++++|.+++++|++
T Consensus 373 K~~~L~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 373 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHhc-CCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEc-cCCcccccccCHHHHHHHHHHhcc
Confidence 34455555554443 356789999999999999999999876 3 355666888999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeEE
Q 031433 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSFS 152 (159)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~i 152 (159)
| +.+|||||++ +++|+|+|+|++|||||+|+++..|+||+|| ||. .|.++
T Consensus 451 ~g-----------------------~~~vLvaT~~----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~ 502 (556)
T 4a2p_A 451 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCI 502 (556)
T ss_dssp --------------------------CCEEEEEC---------------CEEEEETCCSCHHHHHHC---------CCEE
T ss_pred cC-----------------------ceEEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEE
Confidence 7 8999999999 9999999999999999999999999999999 654 46676
Q ss_pred EEE
Q 031433 153 DII 155 (159)
Q Consensus 153 ~~v 155 (159)
.|+
T Consensus 503 ~l~ 505 (556)
T 4a2p_A 503 LVT 505 (556)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 24
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=173.51 Aligned_cols=117 Identities=23% Similarity=0.393 Sum_probs=92.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+.+.+..+.. .....++||||++++.++.+++.|.+.+ +.+..+||+|++++|.+++++|+++
T Consensus 267 ~~~~l~~~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~h~~~~~~~r~~~~~~f~~g--------------- 329 (414)
T 3eiq_A 267 KLDTLCDLYE-TLTITQAVIFINTRRKVDWLTEKMHARD-FTVSAMHGDMDQKERDVIMREFRSG--------------- 329 (414)
T ss_dssp HHHHHHHHHH-SSCCSSCEEECSCHHHHHHHHHHHHTTT-CCCEEC---CHHHHHHHHHHHHSCC---------------
T ss_pred HHHHHHHHHH-hCCCCcEEEEeCCHHHHHHHHHHHHhcC-CeEEEecCCCCHHHHHHHHHHHHcC---------------
Confidence 3444444554 4566899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|++
T Consensus 330 --------~~~vlv~T~~----~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 330 --------SSRVLITTDL----LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp -----------CEEECSS----CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred --------CCcEEEECCc----cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 8999999999 99999999999999999999999999999999775 477777653
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=6.1e-23 Score=165.68 Aligned_cols=116 Identities=22% Similarity=0.442 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+++..+.+ ++. ..+.++||||++++.++.+++.|++.+ +.+..+||+++.++|.++++.|+++
T Consensus 225 ~~~~~l~~-~l~--~~~~~~lvf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~------------- 287 (367)
T 1hv8_A 225 ERFEALCR-LLK--NKEFYGLVFCKTKRDTKELASMLRDIG-FKAGAIHGDLSQSQREKVIRLFKQK------------- 287 (367)
T ss_dssp GHHHHHHH-HHC--STTCCEEEECSSHHHHHHHHHHHHHTT-CCEEEECSSSCHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHH-HHh--cCCCcEEEEECCHHHHHHHHHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHcC-------------
Confidence 33334444 443 456899999999999999999999998 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.++
T Consensus 288 ----------~~~vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 288 ----------KIRILIATDV----MSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp ----------SSSEEEECTT----HHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred ----------CCeEEEECCh----hhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE
Confidence 8999999999 99999999999999999999999999999999775 47777765
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=3.4e-23 Score=171.24 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeec--------CCCHHHHHHHHHHHhcccccc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHS--------DLAETERTLILEEFRHTAMKW 79 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~--------~~~~~~R~~~l~~F~~~~~~~ 79 (159)
.+.+.+++..... ...+.++||||++++.++.+++.|...+ +.+..+|| +|+.++|.+++++|+++
T Consensus 345 ~~~l~~~l~~~~~-~~~~~k~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~---- 418 (494)
T 1wp9_A 345 MDKLKEIIREQLQ-RKQNSKIIVFTNYRETAKKIVNELVKDG-IKAKRFVGQASKENDRGLSQREQKLILDEFARG---- 418 (494)
T ss_dssp HHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHTT-CCEEEECCSSCC-------CCHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHhc-cCCCCeEEEEEccHHHHHHHHHHHHHcC-CCcEEEeccccccccccCCHHHHHHHHHHHhcC----
Confidence 3455555555443 2567999999999999999999999997 79999999 99999999999999998
Q ss_pred cccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEEE
Q 031433 80 NQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDIIL 156 (159)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|.+ |.++.|++
T Consensus 419 -------------------~~~vLv~T~~----~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~ 473 (494)
T 1wp9_A 419 -------------------EFNVLVATSV----GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMA 473 (494)
T ss_dssp -------------------SCSEEEECGG----GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEE
T ss_pred -------------------CceEEEECCc----cccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEe
Confidence 7999999999 999999999999999999999999999999997654 66665553
No 27
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.88 E-value=6.3e-23 Score=180.16 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC---ccEEEe--------ecCCCHHHHHHHHHHHhc-cc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD---ISFSSL--------HSDLAETERTLILEEFRH-TA 76 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~---i~~~~l--------~~~~~~~~R~~~l~~F~~-~~ 76 (159)
+.+.+++..... ..++.++||||+++++++.+++.|+..+. +.+..+ ||+|++++|.+++++|++ |
T Consensus 383 ~~L~~ll~~~~~-~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g- 460 (696)
T 2ykg_A 383 EDLCFILQEEYH-LNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG- 460 (696)
T ss_dssp HHHHHHHHHHHT-TCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------
T ss_pred HHHHHHHHHHhc-cCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-
Confidence 444455544433 34678999999999999999999998752 578888 559999999999999998 8
Q ss_pred ccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC-CeEEEEE
Q 031433 77 MKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG-TSFSDII 155 (159)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~-g~~i~~v 155 (159)
+.+|||||++ +++|||+|+|++|||||+|++++.|+||+|| ||.. |.++.++
T Consensus 461 ----------------------~~~vLVaT~v----~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~ 513 (696)
T 2ykg_A 461 ----------------------DHNILIATSV----ADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLT 513 (696)
T ss_dssp ----------------------CCSCSEEEES----SCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEE
T ss_pred ----------------------CccEEEEech----hhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEEEe
Confidence 8999999999 9999999999999999999999999999999 7754 5555443
No 28
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=5.3e-22 Score=175.41 Aligned_cols=117 Identities=14% Similarity=0.183 Sum_probs=102.9
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
+..++..+......+.++||||+|++.++.+++.|++.| +.+..+||++++.+|.+++++|+.|
T Consensus 431 ~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~l~~f~~g--------------- 494 (661)
T 2d7d_A 431 IDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG-IKVNYLHSEIKTLERIEIIRDLRLG--------------- 494 (661)
T ss_dssp HHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC-CCeEEEeCCCCHHHHHHHHHHHhcC---------------
Confidence 334444443323356899999999999999999999998 7999999999999999999999998
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC-----CCChhHHHhhhhcccCC-CCeEEEEE
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDII 155 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~-----P~~~~~yi~R~GR~~~~-~g~~i~~v 155 (159)
+.+|||+|++ +++|+|+|++++||+||. |.+..+|+||+||+||. .|.++.|+
T Consensus 495 --------~~~VLVaT~~----l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~ 553 (661)
T 2d7d_A 495 --------KYDVLVGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYA 553 (661)
T ss_dssp --------SCSEEEESCC----CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEEC
T ss_pred --------CeEEEEecch----hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEE
Confidence 8999999999 999999999999999997 99999999999999775 58887765
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=2e-22 Score=180.65 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------------CCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------------~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
+.+.|.++|...+. ...+.++||||+++++++.+++.|++. | .....+||+|++++|.+++++|++
T Consensus 614 K~~~L~~lL~~~~~-~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G-~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 614 KLEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp HHHHHHHHHHHHHH-HCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHhc-cCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEe-cCCcccCCCCCHHHHHHHHHHhhc
Confidence 44555566655443 356799999999999999999999874 3 356677899999999999999999
Q ss_pred -ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeEE
Q 031433 75 -TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSFS 152 (159)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~i 152 (159)
| +.+|||||++ +++|||+|+|++|||||+|+++..|+||+|| ||. .|.++
T Consensus 692 ~g-----------------------~~~vLVaT~~----~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i 743 (797)
T 4a2q_A 692 SK-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCI 743 (797)
T ss_dssp -------------------------CCSEEEEECC-----------CCCSEEEEESCCSCHHHHHTC--------CCCEE
T ss_pred cC-----------------------CceEEEEcCc----hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEE
Confidence 7 8999999999 9999999999999999999999999999999 654 57777
Q ss_pred EEEE
Q 031433 153 DIIL 156 (159)
Q Consensus 153 ~~v~ 156 (159)
.|++
T Consensus 744 ~l~~ 747 (797)
T 4a2q_A 744 LVTS 747 (797)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7653
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.87 E-value=3.3e-22 Score=179.37 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+..++...+++.+......+.++||||+|++.++.|++.|...| +.+.+|||++.+++|..+.++|+.+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~g-i~~~vLhg~~~~rEr~ii~~ag~~g---------- 481 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKG-IPHQVLNAKNHEREAQIIEEAGQKG---------- 481 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTT-CCCEEECSSCHHHHHHHHTTTTSTT----------
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCccHHHHHHHHHcCCCC----------
Confidence 34455545554443212346899999999999999999999998 7999999999888887666555543
Q ss_pred cCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC--------CCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 86 QSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~--------~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
.|+||||+ ++||+|++ ++.+|||||+|.+...|+||+||+||. +|.+++|+
T Consensus 482 ---------------~VlIATdm----AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 482 ---------------AVTIATNM----AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp ---------------CEEEEETT----SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred ---------------eEEEeCCc----cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 69999999 99999999 788999999999999999999999664 58888887
Q ss_pred Ee
Q 031433 156 LL 157 (159)
Q Consensus 156 ~~ 157 (159)
++
T Consensus 543 s~ 544 (844)
T 1tf5_A 543 SM 544 (844)
T ss_dssp ET
T ss_pred cH
Confidence 63
No 31
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.87 E-value=1e-21 Score=174.13 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||||+|++.++.|++.|.+.| +.+.++||+..+++|..+.++|+.+
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G-i~~~vLhgkq~~rE~~ii~~ag~~g------- 523 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG-IPHQVLNAKYHEKEAEIVAKAGQKG------- 523 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT-CCCEEECSCHHHHHHHHHHHHHSTT-------
T ss_pred EEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC-CCEEEeeCCchHHHHHHHHhCCCCC-------
Confidence 44555666666666554422357899999999999999999999998 7999999996666665555555554
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCC--------CCCeEEEccCCCChhHHHhhhhcccCC--CCeEE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAI--------SARVLINYELPTKKETYIRRMTTCLAA--GTSFS 152 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~--------~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i 152 (159)
.|+||||+ ++||+|++ +..+|||||+|.+...|+||+||+||. +|.++
T Consensus 524 ------------------~VtVATdm----AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 524 ------------------MVTIATNM----AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp ------------------CEEEEETT----TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred ------------------eEEEEcch----hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 59999999 99999998 667999999999999999999999665 58888
Q ss_pred EEEEe
Q 031433 153 DIILL 157 (159)
Q Consensus 153 ~~v~~ 157 (159)
+|+++
T Consensus 582 ~fvsl 586 (822)
T 3jux_A 582 FFLSL 586 (822)
T ss_dssp EEEET
T ss_pred EEech
Confidence 88864
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.87 E-value=1.4e-21 Score=162.18 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEE-EeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~-~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+.+.++++. .+.++||||++++.++.+++.|++.+ +.+. .+||+ +|. +++|++|
T Consensus 240 ~~~~l~~~l~~------~~~~~lVF~~~~~~~~~l~~~L~~~~-~~~~~~~h~~----~r~--~~~f~~g---------- 296 (414)
T 3oiy_A 240 SKEKLVELLEI------FRDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF----EKN--FEDFKVG---------- 296 (414)
T ss_dssp CHHHHHHHHHH------HCSSEEEEESSHHHHHHHHHHHHHTT-CCEEESSSCH----HHH--HHHHHTT----------
T ss_pred HHHHHHHHHHH------cCCCEEEEECCHHHHHHHHHHHHHcC-CceehhhcCc----chH--HHHHhCC----------
Confidence 44556666654 13899999999999999999999998 6888 99985 444 9999998
Q ss_pred cCCCCCCCCCCCCceeEEEE----ecCCCCCCcCCCCCCC-CCeEEEccCC--CChhHHHhhhhcccCC------CCeEE
Q 031433 86 QSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELP--TKKETYIRRMTTCLAA------GTSFS 152 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~----Td~~~~~~~rGid~~~-v~~VI~~d~P--~~~~~yi~R~GR~~~~------~g~~i 152 (159)
+.+|||| |++ +++|+|+|+ |++|||||+| .++.+|+||+||+||. .|.++
T Consensus 297 -------------~~~vLvat~s~T~~----~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i 359 (414)
T 3oiy_A 297 -------------KINILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSV 359 (414)
T ss_dssp -------------SCSEEEEECCTTCC----CCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEE
T ss_pred -------------CCeEEEEecCcCch----hhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEE
Confidence 8999999 999 999999999 9999999999 9999999999999874 46666
Q ss_pred EEE
Q 031433 153 DII 155 (159)
Q Consensus 153 ~~v 155 (159)
.|+
T Consensus 360 ~~~ 362 (414)
T 3oiy_A 360 IFE 362 (414)
T ss_dssp EEC
T ss_pred EEE
Confidence 653
No 33
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.87 E-value=9.3e-22 Score=173.93 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=97.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||+|++.++.+++.|.+.+ +.+..+||+|++.+|.+++++|+.| +.+||
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~g-i~~~~lh~~~~~~~R~~~~~~f~~g-----------------------~~~VL 493 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHG-IRARYLHHELDAFKRQALIRDLRLG-----------------------HYDCL 493 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT-CCEEEECTTCCHHHHHHHHHHHHTT-----------------------SCSEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcC-CCceeecCCCCHHHHHHHHHHhhcC-----------------------CceEE
Confidence 46899999999999999999999998 7999999999999999999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccC-----CCChhHHHhhhhcccCC-CCeEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLINYEL-----PTKKETYIRRMTTCLAA-GTSFSDII 155 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~-----P~~~~~yi~R~GR~~~~-~g~~i~~v 155 (159)
|+|++ +++|+|+|++++||+||. |.+..+|+||+||+||. .|.++.|+
T Consensus 494 vaT~~----l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 494 VGINL----LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp EESCC----CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred EccCh----hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 99999 999999999999999997 99999999999999776 47777664
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.86 E-value=1.1e-23 Score=178.04 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.....++||||++++.++.+++.|...+ +.+..+||+|++++|..+++.|++| +.+
T Consensus 330 ~~~~~~~lvF~~s~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~~~~f~~g-----------------------~~~ 385 (479)
T 3fmp_B 330 AITIAQAMIFCHTRKTASWLAAELSKEG-HQVALLSGEMMVEQRAAVIERFREG-----------------------KEK 385 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccCCceEEEeCcHHHHHHHHHHHHhCC-ccEEEecCCCCHHHHHHHHHHHHcC-----------------------CCc
Confidence 3445799999999999999999999987 6999999999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCC------ChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPT------KKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~------~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
|||||++ +++|+|+|++++|||||+|. +...|+||+||+||. .|.++.|+.
T Consensus 386 iLv~T~~----~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 386 VLVTTNV----CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEEccc----cccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 9999999 99999999999999999995 568999999999774 477777653
No 35
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.86 E-value=1.5e-21 Score=155.95 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=88.4
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+.+.++|..+.. .+.|+||||++...++.+.+.|... | +.+..+||++++++|.+++++|++++
T Consensus 97 K~~~L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~--------- 163 (271)
T 1z5z_A 97 KMIRTMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP--------- 163 (271)
T ss_dssp HHHHHHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHC-SCCCEECTTSCHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHhcC-CcEEEEECCCCHHHHHHHHHHhcCCC---------
Confidence 44555566665543 4689999999999999999999885 6 69999999999999999999999972
Q ss_pred cCCCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 86 QSGDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
..+ +|++|++ +++|+|++.+++||+||+||++..|.||+||+.|.
T Consensus 164 -------------~~~v~L~st~~----~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~ 209 (271)
T 1z5z_A 164 -------------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 209 (271)
T ss_dssp -------------TCCEEEEECCT----TCCCCCCTTCSEEEECSCCSCTTTC----------
T ss_pred -------------CCCEEEEehhh----hcCCcCcccCCEEEEECCCCChhHHHHHHHhcccc
Confidence 455 7899999 99999999999999999999999999999999554
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.86 E-value=4.3e-22 Score=181.66 Aligned_cols=118 Identities=14% Similarity=0.202 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC------------CCccEEEeecCCCHHHHHHHHHHHhc-
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL------------ADISFSSLHSDLAETERTLILEEFRH- 74 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~------------~~i~~~~l~~~~~~~~R~~~l~~F~~- 74 (159)
.+.+.++|..... ...+.++||||+++++++.|+++|.+. | .....+||+|++++|.+++++|++
T Consensus 615 ~~~L~~lL~~~~~-~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G-~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 615 LEELVCILDDAYR-YNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMG-RGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHHTTT-SCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------
T ss_pred HHHHHHHHHHHhc-cCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEec-CCCcccCCCCCHHHHHHHHHHhhcc
Confidence 3445555554433 356799999999999999999999976 3 356667899999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC-CCeEEE
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA-GTSFSD 153 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~-~g~~i~ 153 (159)
| +++|||||++ +++|||+|+|++|||||+|+|+..|+||+|| ||. .|.++.
T Consensus 693 g-----------------------~~~VLVaT~~----~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~ 744 (936)
T 4a2w_A 693 K-----------------------DNRLLIATSV----ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCIL 744 (936)
T ss_dssp ------------------------CCSEEEEECC----------CCCCSEEEEESCCSCSHHHHCC--------CCCEEE
T ss_pred C-----------------------CeeEEEEeCc----hhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCEEEE
Confidence 7 8999999999 9999999999999999999999999999999 665 466666
Q ss_pred EE
Q 031433 154 II 155 (159)
Q Consensus 154 ~v 155 (159)
++
T Consensus 745 Li 746 (936)
T 4a2w_A 745 VT 746 (936)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 37
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=1.7e-21 Score=155.73 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=93.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
...++++||||++++.++.+++.|. .+..+||+++.++|.+++++|+++ +.+
T Consensus 217 ~~~~~~~lvf~~~~~~~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~~-----------------------~~~ 268 (337)
T 2z0m_A 217 ENKDKGVIVFVRTRNRVAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFREG-----------------------EYD 268 (337)
T ss_dssp TCCCSSEEEECSCHHHHHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHTT-----------------------SCS
T ss_pred hCCCCcEEEEEcCHHHHHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHcC-----------------------CCc
Confidence 4567899999999999999998885 578899999999999999999998 899
Q ss_pred EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 102 MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 102 vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.|+
T Consensus 269 vlv~T~~----~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 269 MLITTDV----ASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp EEEECHH----HHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred EEEEcCc----cccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 9999999 99999999999999999999999999999999775 46666655
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.85 E-value=4e-23 Score=168.67 Aligned_cols=114 Identities=26% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
+.+..+.. .....++||||++++.++.+++.|++.+ +.+..+||++++++|.+++++|+++
T Consensus 248 ~~l~~~~~-~~~~~~~lVf~~~~~~~~~l~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~----------------- 308 (394)
T 1fuu_A 248 ECLTDLYD-SISVTQAVIFCNTRRKVEELTTKLRNDK-FTVSAIYSDLPQQERDTIMKEFRSG----------------- 308 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHh-cCCCCcEEEEECCHHHHHHHHHHHHHcC-CeEEEeeCCCCHHHHHHHHHHHHCC-----------------
Confidence 33443443 3456799999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEEE
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDII 155 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v 155 (159)
+.+|||||++ +++|+|+|++++||+||+|+++..|+||+||++|. .|.++.++
T Consensus 309 ------~~~vlv~T~~----~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 309 ------SSRILISTDL----LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred ------CCcEEEECCh----hhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 8999999999 99999999999999999999999999999999775 46666654
No 39
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=5.9e-22 Score=169.67 Aligned_cols=119 Identities=18% Similarity=0.319 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.....+..+.. .....++||||++++.++.+++.|.+.+ +.+..+||++++++|..+++.|++|
T Consensus 342 ~~k~~~l~~ll~-~~~~~~~LVF~~s~~~a~~l~~~L~~~~-~~v~~~hg~~~~~~R~~il~~f~~g------------- 406 (508)
T 3fho_A 342 EHKYNVLVELYG-LLTIGQSIIFCKKKDTAEEIARRMTADG-HTVACLTGNLEGAQRDAIMDSFRVG------------- 406 (508)
T ss_dssp HHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTT-CCCCEEC-----CTTGGGTHHHHSS-------------
T ss_pred HHHHHHHHHHHH-hcCCCcEEEEECCHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHCC-------------
Confidence 334445555555 4566899999999999999999999987 6999999999999999999999998
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC------CChhHHHhhhhcccCC--CCeEEEEEE
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP------TKKETYIRRMTTCLAA--GTSFSDIIL 156 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P------~~~~~yi~R~GR~~~~--~g~~i~~v~ 156 (159)
+.+|||||++ +++|+|+|++++||+||+| .++..|+||+||++|. .|.++.|+.
T Consensus 407 ----------~~~VLVaT~~----l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~ 468 (508)
T 3fho_A 407 ----------TSKVLVTTNV----IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVH 468 (508)
T ss_dssp ----------SCCCCEECC---------CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEEC
T ss_pred ----------CCeEEEeCCh----hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEe
Confidence 8999999999 9999999999999999999 8899999999999775 477776653
No 40
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.83 E-value=2.2e-20 Score=167.46 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=104.1
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+.+.+......+.++||||+|++.++.|++.|.+.| +.+.+|||++.+++|..+.++|+.|
T Consensus 419 v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g-i~~~vLnak~~~rEa~iia~agr~G------- 490 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAG-IKHNVLNAKFHANEAAIVAQAGYPA------- 490 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT-CCCEECCTTCHHHHHHHHHTTTSTT-------
T ss_pred EEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC-------
Confidence 34445555555555443323467899999999999999999999998 7999999999888888888888775
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC-------------------------------------CeE
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA-------------------------------------RVL 125 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v-------------------------------------~~V 125 (159)
.|+||||+ ++||+|++.. .+|
T Consensus 491 ------------------~VtIATnm----AgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~V 548 (853)
T 2fsf_A 491 ------------------AVTIATNM----AGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHI 548 (853)
T ss_dssp ------------------CEEEEESC----CSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred ------------------eEEEeccc----ccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEE
Confidence 59999999 9999999974 599
Q ss_pred EEccCCCChhHHHhhhhcccCC--CCeEEEEEEe
Q 031433 126 INYELPTKKETYIRRMTTCLAA--GTSFSDIILL 157 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~~ 157 (159)
||||+|.+...|.||+||+||. +|.++.|+++
T Consensus 549 I~te~pes~riy~qr~GRTGRqGd~G~s~~fls~ 582 (853)
T 2fsf_A 549 IGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSM 582 (853)
T ss_dssp EESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred EEccCCCCHHHHHhhccccccCCCCeeEEEEecc
Confidence 9999999999999999999665 5888888764
No 41
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.83 E-value=3.2e-20 Score=169.86 Aligned_cols=115 Identities=14% Similarity=0.173 Sum_probs=99.1
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
+...|..++. ...+.++||||+++++++.+++.|.+. | +.+..+||+|++.+|.+++++|+++
T Consensus 490 K~~~L~~ll~-~~~~~k~iVF~~~~~~~~~l~~~L~~~~g-~~~~~lhG~~~~~~R~~~l~~F~~g-------------- 553 (968)
T 3dmq_A 490 RVEWLMGYLT-SHRSQKVLVICAKAATALQLEQVLREREG-IRAAVFHEGMSIIERDRAAAWFAEE-------------- 553 (968)
T ss_dssp HHHHHHHHHH-HTSSSCCCEECSSTHHHHHHHHHHHTTTC-CCEEEECTTSCTTHHHHHHHHHHST--------------
T ss_pred HHHHHHHHHH-hCCCCCEEEEeCcHHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCC--------------
Confidence 3333443444 356789999999999999999999964 6 7999999999999999999999998
Q ss_pred CCCCCCCCCc--eeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC--CCeEEEE
Q 031433 90 ESETGKDEHK--SHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA--GTSFSDI 154 (159)
Q Consensus 90 ~~~~~~~~~~--~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~ 154 (159)
+ ++|||||++ +++|+|+|++++||+||+|+++..|.||+||++|. .+.++.+
T Consensus 554 ---------~~~~~vLvaT~v----~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~ 609 (968)
T 3dmq_A 554 ---------DTGAQVLLCSEI----GSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609 (968)
T ss_dssp ---------TSSCEEEECSCC----TTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEE
T ss_pred ---------CCcccEEEecch----hhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEE
Confidence 5 999999999 99999999999999999999999999999999554 3544433
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.82 E-value=1.6e-20 Score=158.66 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=82.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|++.+ +.+..+|| ++|.+++++|++| +.+|||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~-~~v~~lhg----~~R~~~~~~F~~g-----------------------~~~vLV 228 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG-KSVVVLNR----KTFEREYPTIKQK-----------------------KPDFIL 228 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEECCS----SSCC--------C-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CCEEEecc----hhHHHHHhhhcCC-----------------------CceEEE
Confidence 5799999999999999999999997 69999999 4688999999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEE-------------------ccCCCChhHHHhhhhcccCC---CCeEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLIN-------------------YELPTKKETYIRRMTTCLAA---GTSFSDII 155 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~-------------------~d~P~~~~~yi~R~GR~~~~---~g~~i~~v 155 (159)
||++ +++|+|+| +++||| ||.|.+..+|+||+||+||. .|.++.|+
T Consensus 229 aT~v----~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 229 ATDI----AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ESSS----TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ECCh----hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 9999 99999999 999996 99999999999999999875 47777664
No 43
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.81 E-value=7.9e-20 Score=164.51 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=102.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhccccccccc
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQK 82 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~ 82 (159)
++.+..++...+++.+......+.++||||+|++.++.|++.|.+.| +.+.+|||++.++++..+.++|+.|
T Consensus 438 v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~G-i~~~vLnak~~~rEa~iia~agr~G------- 509 (922)
T 1nkt_A 438 IYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRR-IPHNVLNAKYHEQEATIIAVAGRRG------- 509 (922)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT-CCCEEECSSCHHHHHHHHHTTTSTT-------
T ss_pred EEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC-CCEEEecCChhHHHHHHHHhcCCCC-------
Confidence 34444555555555444323456899999999999999999999998 7999999999888877777777765
Q ss_pred ccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC----------------------------------------
Q 031433 83 VTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA---------------------------------------- 122 (159)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v---------------------------------------- 122 (159)
.|+||||+ ++||+|++.+
T Consensus 510 ------------------~VtIATnm----AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 510 ------------------GVTVATNM----AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ------------------CEEEEETT----CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------eEEEecch----hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 58999999 9999999976
Q ss_pred ------------CeEEEccCCCChhHHHhhhhcccCC--CCeEEEEEEe
Q 031433 123 ------------RVLINYELPTKKETYIRRMTTCLAA--GTSFSDIILL 157 (159)
Q Consensus 123 ------------~~VI~~d~P~~~~~yi~R~GR~~~~--~g~~i~~v~~ 157 (159)
.+|||||.|.+...|.||+||+||. +|.++.|+++
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 4999999999999999999999665 5888888864
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.81 E-value=4e-20 Score=162.37 Aligned_cols=98 Identities=10% Similarity=0.000 Sum_probs=89.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||||+|++.++.+++.|++.+ +.+..+||+ +|.+++++|++| +.+|||
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~----~R~~~l~~F~~g-----------------------~~~VLV 406 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRK----TFDTEYPKTKLT-----------------------DWDFVV 406 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTT-CCEEEECTT----THHHHTTHHHHS-----------------------CCSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHcC-CcEEEEChH----HHHHHHHhhcCC-----------------------CcEEEE
Confidence 5799999999999999999999998 699999984 788899999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeE--------------------EEccCCCChhHHHhhhhcccCC---CCeEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVL--------------------INYELPTKKETYIRRMTTCLAA---GTSFSDII 155 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~V--------------------I~~d~P~~~~~yi~R~GR~~~~---~g~~i~~v 155 (159)
|||+ ++||+|++ +++| ||||+|.+.++|+||+||+||. .|.++.|+
T Consensus 407 aTdv----~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 407 TTDI----SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp ECGG----GGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ECcH----HHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 9999 99999997 9988 8889999999999999999776 46777665
No 45
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.81 E-value=1.5e-20 Score=159.51 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=87.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|+..+ +.+..+||+ +|.+++++|++| +.+|||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g-~~v~~lh~~----~R~~~~~~f~~g-----------------------~~~iLV 241 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG-KKVIQLNRK----SYDTEYPKCKNG-----------------------DWDFVI 241 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT-CCEEEESTT----CCCCCGGGSSSC-----------------------CCSEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC-CcEEecCHH----HHHHHHhhccCC-----------------------CceEEE
Confidence 5799999999999999999999997 699999995 678889999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEE--------------------ccCCCChhHHHhhhhcccCC---CCeEEEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---GTSFSDIIL 156 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~--------------------~d~P~~~~~yi~R~GR~~~~---~g~~i~~v~ 156 (159)
||++ +++|+|+|+ ++||| ||.|.++.+|+||+||+||. .|.++.|++
T Consensus 242 aT~v----~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 242 TTDI----SEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp ESSC----C---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ECCh----HHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999 999999999 99999 88999999999999999776 567776653
No 46
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.81 E-value=6.7e-20 Score=155.07 Aligned_cols=97 Identities=10% Similarity=0.017 Sum_probs=87.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||||++++.++.+++.|++.+ +.+..+||++. .+++++|++| +.+|||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g-~~~~~lh~~~~----~~~~~~f~~g-----------------------~~~vLV 239 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG-KRVIQLSRKTF----DTEYPKTKLT-----------------------DWDFVV 239 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECTTTH----HHHGGGGGSS-----------------------CCSEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC-CeEEECCHHHH----HHHHHhhccC-----------------------CceEEE
Confidence 4699999999999999999999997 69999999764 5689999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEcc--------------------CCCChhHHHhhhhcccCCC---CeEEEE
Q 031433 105 VTDACLPLLSSGESAISARVLINYE--------------------LPTKKETYIRRMTTCLAAG---TSFSDI 154 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d--------------------~P~~~~~yi~R~GR~~~~~---g~~i~~ 154 (159)
|||+ +++|+|+|+ ++||||| .|.+..+|+||+||+||.+ |.++.|
T Consensus 240 aT~v----~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~ 307 (451)
T 2jlq_A 240 TTDI----SEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVF 307 (451)
T ss_dssp ECGG----GGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred ECCH----HHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEE
Confidence 9999 999999999 9999999 9999999999999997765 445433
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.80 E-value=2.4e-20 Score=167.36 Aligned_cols=105 Identities=11% Similarity=0.143 Sum_probs=94.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc----------CCCccEEEeecCCCHHHHHHHHHHHh-----cccccccccccccC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSN----------LADISFSSLHSDLAETERTLILEEFR-----HTAMKWNQKVTEQS 87 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~----------~~~i~~~~l~~~~~~~~R~~~l~~F~-----~~~~~~~~~~~~~~ 87 (159)
..+.++||||++++.++.+++.|++ ...+.+..+||+|++++|.++++.|+ .|
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g------------ 368 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP------------ 368 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC------------
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC------------
Confidence 3468999999999999999999985 13378999999999999999999998 66
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccC------------------CCChhHHHhhhhcccCC-C
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYEL------------------PTKKETYIRRMTTCLAA-G 148 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~------------------P~~~~~yi~R~GR~~~~-~ 148 (159)
..+|||||++ +++|+|++++++||+|++ |.+..+|+||+||+||. .
T Consensus 369 -----------~~kVlVAT~i----ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~ 433 (773)
T 2xau_A 369 -----------GRKVVISTNI----AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433 (773)
T ss_dssp -----------CEEEEEECTH----HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS
T ss_pred -----------ceEEEEeCcH----HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC
Confidence 8999999999 999999999999999888 89999999999999885 5
Q ss_pred CeEEEE
Q 031433 149 TSFSDI 154 (159)
Q Consensus 149 g~~i~~ 154 (159)
|.++.|
T Consensus 434 G~~~~l 439 (773)
T 2xau_A 434 GKCFRL 439 (773)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 666654
No 48
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.80 E-value=1.7e-19 Score=167.01 Aligned_cols=86 Identities=16% Similarity=0.265 Sum_probs=75.3
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEE-EeecCCCHHHHHHHHHHHhcccccccccccc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFS-SLHSDLAETERTLILEEFRHTAMKWNQKVTE 85 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~-~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~ 85 (159)
+.+.+.+++.. .+.++|||||+++.++.+++.|+..+ +.+. .+||+ |.+ +++|++|
T Consensus 297 k~~~L~~ll~~------~~~~~LVF~~s~~~a~~l~~~L~~~g-~~~~~~lhg~-----rr~-l~~F~~G---------- 353 (1104)
T 4ddu_A 297 SKEKLVELLEI------FRDGILIFAQTEEEGKELYEYLKRFK-FNVGETWSEF-----EKN-FEDFKVG---------- 353 (1104)
T ss_dssp CHHHHHHHHHH------HCSSEEEEESSSHHHHHHHHHHHHTT-CCEEESSSSH-----HHH-HHHHHHT----------
T ss_pred HHHHHHHHHHh------cCCCEEEEECcHHHHHHHHHHHHhCC-CCeeeEecCc-----HHH-HHHHHCC----------
Confidence 44556666654 13899999999999999999999998 6998 99992 555 9999999
Q ss_pred cCCCCCCCCCCCCceeEEEE----ecCCCCCCcCCCCCCC-CCeEEEccCCC
Q 031433 86 QSGDESETGKDEHKSHMIVV----TDACLPLLSSGESAIS-ARVLINYELPT 132 (159)
Q Consensus 86 ~~~~~~~~~~~~~~~~vLV~----Td~~~~~~~rGid~~~-v~~VI~~d~P~ 132 (159)
+.+|||| ||+ ++||+|+|+ |++|||||+|.
T Consensus 354 -------------~~~VLVatas~Tdv----larGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 354 -------------KINILIGVQAYYGK----LTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp -------------SCSEEEEETTTHHH----HCCSCCCTTTCCEEEEESCCE
T ss_pred -------------CCCEEEEecCCCCe----eEecCcCCCCCCEEEEECCCC
Confidence 8999999 999 999999999 99999999999
No 49
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.80 E-value=5.7e-20 Score=154.88 Aligned_cols=102 Identities=20% Similarity=0.256 Sum_probs=90.4
Q ss_pred HHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCC
Q 031433 13 ELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESE 92 (159)
Q Consensus 13 ~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~ 92 (159)
+.+..++. ...+.++||||++++.++.+++.|. +..+||+++.++|.+++++|++|
T Consensus 338 ~~l~~~l~-~~~~~k~lvF~~~~~~~~~l~~~l~------~~~~~g~~~~~~R~~~~~~F~~g----------------- 393 (472)
T 2fwr_A 338 RKLREILE-RHRKDKIIIFTRHNELVYRISKVFL------IPAITHRTSREEREEILEGFRTG----------------- 393 (472)
T ss_dssp HHHHHHHH-HTSSSCBCCBCSCHHHHHHHHHHTT------CCBCCSSSCSHHHHTHHHHHHHS-----------------
T ss_pred HHHHHHHH-hCCCCcEEEEECCHHHHHHHHHHhC------cceeeCCCCHHHHHHHHHHHhCC-----------------
Confidence 33333444 3567899999999999999999983 45689999999999999999998
Q ss_pred CCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 93 TGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 93 ~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
+.+|||+|++ +++|+|+|++++||+||.|+++..|+||+||++|.+
T Consensus 394 ------~~~vLv~T~~----~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 394 ------RFRAIVSSQV----LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp ------SCSBCBCSSC----CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred ------CCCEEEEcCc----hhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 8999999999 999999999999999999999999999999997654
No 50
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.5e-19 Score=167.29 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCcc-----------------------------------
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADIS----------------------------------- 52 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~----------------------------------- 52 (159)
...+..++..+.. ....++||||++++.|+.++..|...+ +.
T Consensus 426 ~~~l~~li~~l~~--~~~~~vIVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 502 (1108)
T 3l9o_A 426 KGDIYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLD-FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPL 502 (1108)
T ss_dssp HHHHHHHHHHHHH--TTCCCEEEEESCHHHHHHHHHHTCSHH-HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHH
T ss_pred hhHHHHHHHHHHh--cCCCCEEEEeCcHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHh
Confidence 4455566665544 346799999999999999999997642 11
Q ss_pred ----EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEc
Q 031433 53 ----FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINY 128 (159)
Q Consensus 53 ----~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~ 128 (159)
+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|++++||++
T Consensus 503 l~~gV~~~Hg~l~~~~R~~v~~~F~~G-----------------------~ikVLVAT~v----la~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 503 LRRGIGIHHSGLLPILKEVIEILFQEG-----------------------FLKVLFATET----FSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp HHHTEEEECSCSCHHHHHHHHHHHHHT-----------------------CCCEEEEESC----CCSCCCC--CEEEESC
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHhCC-----------------------CCeEEEECcH----HhcCCCCCCceEEEec
Confidence 79999999999999999999999 8999999999 9999999999999988
Q ss_pred cCCC--------ChhHHHhhhhcccCCC--CeEEEEEE
Q 031433 129 ELPT--------KKETYIRRMTTCLAAG--TSFSDIIL 156 (159)
Q Consensus 129 d~P~--------~~~~yi~R~GR~~~~~--g~~i~~v~ 156 (159)
+.|+ ++.+|+||+||+||.+ +.++.++.
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred CcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 8754 5667999999998877 55555543
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.79 E-value=1.6e-19 Score=159.91 Aligned_cols=99 Identities=8% Similarity=-0.030 Sum_probs=90.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++||||++++.++.+++.|++.+ +.+..+||+ +|.+++++|++| +.+||
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g-~~v~~lHg~----eR~~v~~~F~~g-----------------------~~~VL 460 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAG-KRVIQLNRK----SYDTEYPKCKNG-----------------------DWDFV 460 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTT-CCEEEECSS----SHHHHGGGGGTC-----------------------CCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCC-CeEEEeChH----HHHHHHHHHHCC-----------------------CceEE
Confidence 46899999999999999999999997 799999994 789999999998 89999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEE--------------------ccCCCChhHHHhhhhcccCC---CCeEEEEE
Q 031433 104 VVTDACLPLLSSGESAISARVLIN--------------------YELPTKKETYIRRMTTCLAA---GTSFSDII 155 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~--------------------~d~P~~~~~yi~R~GR~~~~---~g~~i~~v 155 (159)
|||++ +++|+|+| +++||| ||+|.++++|+||+||+||. .|.++.|+
T Consensus 461 VaTdv----~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 461 ITTDI----SEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp EECGG----GGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred EECch----hhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 99999 99999999 999998 67999999999999999776 46667664
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.79 E-value=4.7e-19 Score=153.56 Aligned_cols=105 Identities=12% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-------ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 18 VVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-------ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 18 l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-------i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
++.......|+||||+++++++.+++.|.+.+. -.+..+||++++ +|.+++++|++++..
T Consensus 432 ~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~------------ 498 (590)
T 3h1t_A 432 FMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETS------------ 498 (590)
T ss_dssp HHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCC------------
T ss_pred HHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCC------------
Confidence 343345568999999999999999999987531 137889999864 799999999997200
Q ss_pred CCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 91 SETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
...|||||++ +++|+|+|++++||+|+.|+++..|+||+||++|.
T Consensus 499 --------~~~ilvtt~~----l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~ 543 (590)
T 3h1t_A 499 --------TPVILTTSQL----LTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRL 543 (590)
T ss_dssp --------CCCEEEESST----TTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCC
T ss_pred --------CCEEEEECCh----hhcCccchheeEEEEEecCCChHHHHHHHhhhccc
Confidence 1238899999 99999999999999999999999999999999774
No 53
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.2e-19 Score=163.15 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=99.5
Q ss_pred HHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc--------------------------------------c
Q 031433 11 LVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI--------------------------------------S 52 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i--------------------------------------~ 52 (159)
+..++..+.. ....++||||++++.++.+++.|...+.. .
T Consensus 331 l~~l~~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 408 (1010)
T 2xgj_A 331 IYKIVKMIWK--KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 408 (1010)
T ss_dssp HHHHHHHHHH--HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh--cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCC
Confidence 4455554433 23469999999999999999999875421 1
Q ss_pred EEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----c
Q 031433 53 FSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----Y 128 (159)
Q Consensus 53 ~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~ 128 (159)
+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|++++||+ |
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G-----------------------~ikVLVAT~~----la~GIDiP~~~vVI~~~~kf 461 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEG-----------------------FLKVLFATET----FSIGLNMPAKTVVFTSVRKW 461 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTT-----------------------CCSEEEEEGG----GGGSTTCCBSEEEESCSEEE
T ss_pred eeEECCCCCHHHHHHHHHHHhcC-----------------------CCcEEEEehH----hhccCCCCCceEEEeCCccc
Confidence 78899999999999999999998 8999999999 999999999999999 9
Q ss_pred cC----CCChhHHHhhhhcccCCC----CeEEEEE
Q 031433 129 EL----PTKKETYIRRMTTCLAAG----TSFSDII 155 (159)
Q Consensus 129 d~----P~~~~~yi~R~GR~~~~~----g~~i~~v 155 (159)
|. |.++.+|+||+||+||.+ |.++.++
T Consensus 462 d~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 462 DGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp CSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEE
T ss_pred CCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEE
Confidence 99 999999999999998876 6777665
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.78 E-value=1.7e-18 Score=146.78 Aligned_cols=109 Identities=13% Similarity=0.132 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
+.+.+++..+. ..+.|+||||++++.++.+.+.|... + +.+..+||+++.++|.+++++|++++
T Consensus 328 ~~l~~~l~~~~---~~~~k~lvF~~~~~~~~~l~~~l~~~~~-~~~~~~~g~~~~~~R~~~~~~F~~~~----------- 392 (500)
T 1z63_A 328 IRTMEIIEEAL---DEGDKIAIFTQFVDMGKIIRNIIEKELN-TEVPFLYGELSKKERDDIISKFQNNP----------- 392 (500)
T ss_dssp HHHHHHHHHHH---TTTCCEEEECSCHHHHHHHHHHHHHHHT-CCCCEEETTSCHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHH---ccCCcEEEEEehHHHHHHHHHHHHHhhC-CCeEEEECCCCHHHHHHHHHHhcCCC-----------
Confidence 34445555443 35689999999999999999999885 6 68999999999999999999999972
Q ss_pred CCCCCCCCCCCcee-EEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 88 GDESETGKDEHKSH-MIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 88 ~~~~~~~~~~~~~~-vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
..+ +|++|++ +++|+|++.+++||+||+||++..|.||+||++|.
T Consensus 393 -----------~~~vil~st~~----~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 393 -----------SVKFIVLSVKA----GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp -----------TCCCCEEECCC----C-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTT
T ss_pred -----------CCCEEEEeccc----ccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHc
Confidence 344 7999999 99999999999999999999999999999999554
No 55
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.78 E-value=1.4e-18 Score=153.73 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCC-----------------------------------ccE
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLAD-----------------------------------ISF 53 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~-----------------------------------i~~ 53 (159)
+.+.+++..+.. .+.++||||++++.++.+++.|.+... ..+
T Consensus 239 ~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 239 DAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp SHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred hHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 344444444443 468999999999999999999986421 138
Q ss_pred EEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc
Q 031433 54 SSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE 129 (159)
Q Consensus 54 ~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d 129 (159)
..+||+|++++|..+++.|++| .++|||||++ +++|+|+|++++||+ ||
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g-----------------------~~~vlvaT~~----l~~Gidip~~~~VI~~~~~~d 368 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQR-----------------------KIKVIVATPT----LAAGVNLPARTVIIGDIYRFN 368 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTT-----------------------CSCEEEECGG----GGGSSCCCBSEEEECCC----
T ss_pred EEECCCCCHHHHHHHHHHHHcC-----------------------CCeEEEEChH----HhcccCCCceEEEEeCCeecc
Confidence 8999999999999999999998 8999999999 999999999999999 99
Q ss_pred -------CCCChhHHHhhhhcccCCC----CeEEEE
Q 031433 130 -------LPTKKETYIRRMTTCLAAG----TSFSDI 154 (159)
Q Consensus 130 -------~P~~~~~yi~R~GR~~~~~----g~~i~~ 154 (159)
.|.+..+|.||+||+||.+ |.++.+
T Consensus 369 ~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 404 (715)
T 2va8_A 369 KKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404 (715)
T ss_dssp ----------CHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred ccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 8999999999999998854 556554
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.78 E-value=8.3e-19 Score=155.45 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=88.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc--ccccccccccccCCCCCCCCCCCCceeEE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH--TAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
...+|||++++.++.+++.|++.+ +.+..+||+|++++|.++++.|+. | +.+||
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g-~~v~~lHG~L~~~~R~~~~~~F~~~~g-----------------------~~~VL 376 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRG-LESAVIYGSLPPGTKLAQAKKFNDPND-----------------------PCKIL 376 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT-CCCEEECTTSCHHHHHHHHHHHHCTTS-----------------------SCCEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcC-CCeeeeeccCCHHHHHHHHHHHHccCC-----------------------CeEEE
Confidence 455899999999999999999987 699999999999999999999998 5 79999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccC--------------CCChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYEL--------------PTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~--------------P~~~~~yi~R~GR~~~~~ 148 (159)
|||++ +++|+|+ ++++||++++ |.+..+|+||+||+||.+
T Consensus 377 VATdi----~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 377 VATDA----IGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp EECGG----GGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred EeCcH----HHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999 9999999 9999999999 889999999999998876
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.77 E-value=1.4e-18 Score=147.62 Aligned_cols=105 Identities=11% Similarity=0.090 Sum_probs=92.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.++++||||+ .+.++.+++.|.+.+ ..+..+||+|++++|.+++++|+++ +.+||
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~-~~v~~~~g~~~~~~r~~i~~~f~~g-----------------------~~~vL 401 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEY-DKVYYVSGEVDTETRNIMKTLAENG-----------------------KGIII 401 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTC-SSEEEESSSTTHHHHHHHHHHHHHC-----------------------CSCEE
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHHHHhCC-----------------------CCCEE
Confidence 4567777777 888999999999987 4999999999999999999999998 89999
Q ss_pred EEe-cCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC--CeEEEEEEe
Q 031433 104 VVT-DACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG--TSFSDIILL 157 (159)
Q Consensus 104 V~T-d~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~--g~~i~~v~~ 157 (159)
||| ++ +++|+|+|++++||+++.|+++..|+||+||++|.+ +..+.++.+
T Consensus 402 v~T~~~----~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 402 VASYGV----FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp EEEHHH----HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred EEEcCh----hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 999 99 999999999999999999999999999999996654 334555443
No 58
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.77 E-value=6.5e-19 Score=148.34 Aligned_cols=91 Identities=9% Similarity=-0.010 Sum_probs=83.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|++.+ +.+..+||+ +|.+++++|++| +.+|||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~-~~v~~lhg~----~r~~~~~~f~~g-----------------------~~~vLV 222 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG-KKVLYLNRK----TFESEYPKCKSE-----------------------KWDFVI 222 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT-CCEEEESTT----THHHHTTHHHHS-----------------------CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC-CeEEEeCCc----cHHHHHHhhcCC-----------------------CCeEEE
Confidence 4689999999999999999999997 699999997 577899999998 899999
Q ss_pred EecCCCCCCcCCCCCCCCCe-----------------EEEccCCCChhHHHhhhhcccCCC
Q 031433 105 VTDACLPLLSSGESAISARV-----------------LINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~-----------------VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
||++ +++|+|+| +.+ ||+|+.|.+..+|+||+||+||.+
T Consensus 223 aT~v----~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 223 TTDI----SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp ECGG----GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ECch----HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 9999 99999999 655 689999999999999999998764
No 59
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=1.2e-18 Score=160.76 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.++||||++++.++.+++.|+.. +.+..+||++. +++++|++| +.+|||
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--~~v~~lhg~~~-----~~l~~F~~G-----------------------~~~VLV 324 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--FRIGIVTATKK-----GDYEKFVEG-----------------------EIDHLI 324 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--SCEEECTTSSS-----HHHHHHHHT-----------------------SCSEEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--cCeeEEeccHH-----HHHHHHHcC-----------------------CCcEEE
Confidence 478999999999999999999987 69999999983 778999998 899999
Q ss_pred E----ecCCCCCCcCCCCCCCC-CeEEEccCC
Q 031433 105 V----TDACLPLLSSGESAISA-RVLINYELP 131 (159)
Q Consensus 105 ~----Td~~~~~~~rGid~~~v-~~VI~~d~P 131 (159)
| ||+ ++||+|+|+| ++|||||+|
T Consensus 325 aTas~Tdv----~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 325 GTAHYYGT----LVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EECC----------CCSCCTTTCCEEEEESCC
T ss_pred EecCCCCe----eEeccccCCcccEEEEeCCC
Confidence 9 999 9999999996 999999999
No 60
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.76 E-value=5e-19 Score=156.34 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=81.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.++|||||+++.++.+++.|++.+ +.+..+||+|++++ |.++ ..+||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g-~~v~~lHG~l~q~e-------r~~~-----------------------~~~VL 443 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG-INAVAYYRGLDVSV-------IPTI-----------------------GDVVV 443 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT-CCEEEECTTSCGGG-------SCSS-----------------------SCEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC-CcEEEecCCCCHHH-------HHhC-----------------------CCcEE
Confidence 46899999999999999999999998 79999999999875 4444 45999
Q ss_pred EEecCCCCCCcCCCCCCCCCeEE----------Ecc-----------CCCChhHHHhhhhcccCCCCeEE
Q 031433 104 VVTDACLPLLSSGESAISARVLI----------NYE-----------LPTKKETYIRRMTTCLAAGTSFS 152 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI----------~~d-----------~P~~~~~yi~R~GR~~~~~g~~i 152 (159)
||||+ ++||||++ +++|| ||| +|.+.++|+||+||+|| +....
T Consensus 444 VATdV----aerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 444 VATDA----LMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp EECTT----HHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred EECCh----HHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 99999 99999996 99988 788 99999999999999988 44443
No 61
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.76 E-value=2.3e-18 Score=152.31 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=91.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--C---------------------------CccEEEeecCCCHHHHHHHHHHHhc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--A---------------------------DISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--~---------------------------~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.++++||||++++.++.+++.|.+. . ...+..+||+|++++|..+++.|++
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 320 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 320 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC
Confidence 4689999999999999999998753 0 0147889999999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc---CCCChhHHHhhhhcccCC
Q 031433 75 TAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE---LPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d---~P~~~~~yi~R~GR~~~~ 147 (159)
| .++|||||++ +++|+|+|++++||+ || .|.+..+|.||+||+||.
T Consensus 321 g-----------------------~~~vlvaT~~----l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~ 373 (702)
T 2p6r_A 321 G-----------------------NIKVVVATPT----LAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRP 373 (702)
T ss_dssp T-----------------------SCCEEEECST----TTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCT
T ss_pred C-----------------------CCeEEEECcH----HhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCC
Confidence 8 8999999999 999999999999999 77 799999999999999885
Q ss_pred C----CeEEEE
Q 031433 148 G----TSFSDI 154 (159)
Q Consensus 148 ~----g~~i~~ 154 (159)
+ |.++.+
T Consensus 374 g~~~~G~~~~l 384 (702)
T 2p6r_A 374 GMDERGEAIII 384 (702)
T ss_dssp TTCSCEEEEEE
T ss_pred CCCCCceEEEE
Confidence 4 555554
No 62
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.76 E-value=2.7e-18 Score=159.55 Aligned_cols=104 Identities=12% Similarity=0.140 Sum_probs=94.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.+.+++||||++++++.+++.|++. +...+..+||+|++++|.+++++|++| +.+|
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-----------------------~~~V 867 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-----------------------RFNV 867 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-----------------------SCCE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-----------------------CCcE
Confidence 4689999999999999999999986 226899999999999999999999998 8999
Q ss_pred EEEecCCCCCCcCCCCCCCCCeEEEccC-CCChhHHHhhhhcccCCCCeEEEE
Q 031433 103 IVVTDACLPLLSSGESAISARVLINYEL-PTKKETYIRRMTTCLAAGTSFSDI 154 (159)
Q Consensus 103 LV~Td~~~~~~~rGid~~~v~~VI~~d~-P~~~~~yi~R~GR~~~~~g~~i~~ 154 (159)
||||++ +++|+|+|++++||+++. ++++..|.||+||++|.+..+..+
T Consensus 868 LVaT~v----~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ 916 (1151)
T 2eyq_A 868 LVCTTI----IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 916 (1151)
T ss_dssp EEESST----TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEE
T ss_pred EEECCc----ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEE
Confidence 999999 999999999999999998 579999999999998876444444
No 63
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.75 E-value=1.8e-18 Score=153.28 Aligned_cols=104 Identities=19% Similarity=0.176 Sum_probs=91.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-----------------C---------------ccEEEeecCCCHHHHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----------------D---------------ISFSSLHSDLAETERTLILEE 71 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-----------------~---------------i~~~~l~~~~~~~~R~~~l~~ 71 (159)
+++++||||++++.++.+++.|.+.. . ..+..+||+|++++|..+++.
T Consensus 236 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 35899999999999999999997531 0 138999999999999999999
Q ss_pred HhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----cc----CCCChhHHHhhhhc
Q 031433 72 FRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YE----LPTKKETYIRRMTT 143 (159)
Q Consensus 72 F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d----~P~~~~~yi~R~GR 143 (159)
|++| .++|||||++ +++|+|+|++++||+ || .|.+..+|.||+||
T Consensus 316 f~~g-----------------------~~~vlvaT~~----l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GR 368 (720)
T 2zj8_A 316 FRKG-----------------------IIKAVVATPT----LSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGR 368 (720)
T ss_dssp HHTT-----------------------SSCEEEECST----TGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTT
T ss_pred HHCC-----------------------CCeEEEECcH----hhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhh
Confidence 9998 8999999999 999999999999999 88 69999999999999
Q ss_pred ccCCC----CeEEEE
Q 031433 144 CLAAG----TSFSDI 154 (159)
Q Consensus 144 ~~~~~----g~~i~~ 154 (159)
+||.+ |.++.+
T Consensus 369 aGR~g~~~~G~~~~l 383 (720)
T 2zj8_A 369 AGRPKYDEVGEGIIV 383 (720)
T ss_dssp BCCTTTCSEEEEEEE
T ss_pred cCCCCCCCCceEEEE
Confidence 98864 445544
No 64
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.74 E-value=2.1e-17 Score=145.42 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=90.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMI 103 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL 103 (159)
.+.|+||||++.+.++.+.+.|...+ +.+..+||+++.++|.+++++|++++. +...+|
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-~~~~~l~G~~~~~~R~~~i~~F~~~~~--------------------~~~v~L 473 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-YLYVRLDGTMSIKKRAKIVERFNNPSS--------------------PEFIFM 473 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-CCEEEECSSCCHHHHHHHHHHHHSTTC--------------------CCCEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-CCEEEEeCCCCHHHHHHHHHHhcCCCC--------------------CcEEEE
Confidence 46899999999999999999999988 799999999999999999999999720 023589
Q ss_pred EEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCCC
Q 031433 104 VVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAAG 148 (159)
Q Consensus 104 V~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~~ 148 (159)
++|++ +++|+|++.+++||+||+||++..|.||+||+.|.+
T Consensus 474 ~st~a----~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~G 514 (644)
T 1z3i_X 474 LSSKA----GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 514 (644)
T ss_dssp EEGGG----SCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTT
T ss_pred Eeccc----ccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcC
Confidence 99999 999999999999999999999999999999995543
No 65
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.72 E-value=1.8e-17 Score=152.19 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=94.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCc--------------------------------------
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADI-------------------------------------- 51 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i-------------------------------------- 51 (159)
.+..+++.+.. ....++||||++++.|+.+++.|...+..
T Consensus 323 ~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 323 TWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp HHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 34455554433 34689999999999999999999876521
Q ss_pred cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCC
Q 031433 52 SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELP 131 (159)
Q Consensus 52 ~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P 131 (159)
.+..+||+|++.+|..+++.|++| .++|||||++ +++|+|+|+ ..||++++|
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G-----------------------~~kVLvAT~~----~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKG-----------------------FIKVLFATET----FAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTT-----------------------CCSEEEECTH----HHHSCCCCC-SEEEESCSE
T ss_pred CeeeecCCCCHHHHHHHHHHHHCC-----------------------CCcEEEEchH----hhCCCCCCC-ceEEEeccc
Confidence 378999999999999999999999 8999999999 999999999 555555555
Q ss_pred C---------ChhHHHhhhhcccCCC--CeEEEEE
Q 031433 132 T---------KKETYIRRMTTCLAAG--TSFSDII 155 (159)
Q Consensus 132 ~---------~~~~yi~R~GR~~~~~--g~~i~~v 155 (159)
. ++.+|+||+||+||.+ +.+..++
T Consensus 453 k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~ 487 (997)
T 4a4z_A 453 KHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIV 487 (997)
T ss_dssp EEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEE
T ss_pred cccCccCCCCCHHHHhHHhcccccCCCCcceEEEE
Confidence 5 9999999999998865 4444443
No 66
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.71 E-value=1.4e-18 Score=155.95 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=90.6
Q ss_pred CCCCCcEEEEeCch--------HHHHHHHHHHhc-C-CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCC
Q 031433 22 RRPGLPMIVCCSSR--------DELDAVCSAVSN-L-ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDES 91 (159)
Q Consensus 22 ~~~~~k~iIF~ns~--------~~~~~l~~~L~~-~-~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~ 91 (159)
...+.+++|||++. ..++.+++.|.+ . +++.+..+||+|++++|.+++++|++|
T Consensus 575 l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G---------------- 638 (780)
T 1gm5_A 575 VMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG---------------- 638 (780)
T ss_dssp TTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT----------------
T ss_pred HhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC----------------
Confidence 34578999999965 457889999988 2 236899999999999999999999998
Q ss_pred CCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCC-ChhHHHhhhhcccCC--CCeEEEE
Q 031433 92 ETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPT-KKETYIRRMTTCLAA--GTSFSDI 154 (159)
Q Consensus 92 ~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~-~~~~yi~R~GR~~~~--~g~~i~~ 154 (159)
+.+|||||++ +++|+|+|++++||+||.|+ +...|.||+||+||. .|.++.+
T Consensus 639 -------~~~ILVaT~v----ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 639 -------RYDILVSTTV----IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp -------SSSBCCCSSC----CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred -------CCeEEEECCC----CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 8999999999 99999999999999999996 688899999999775 4666544
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.8e-17 Score=145.19 Aligned_cols=112 Identities=15% Similarity=0.241 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...+.++|..+ ...+.|+||||+....++.|.++|...| +.+..+||+++.++|.+++++|+++.
T Consensus 558 ~~~L~~lL~~~---~~~g~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~i~G~~~~~eR~~~i~~F~~~~----------- 622 (800)
T 3mwy_W 558 MVLLDQLLTRL---KKDGHRVLIFSQMVRMLDILGDYLSIKG-INFQRLDGTVPSAQRRISIDHFNSPD----------- 622 (800)
T ss_dssp HHHHHHHHHHH---TTTTCCEEEEESCHHHHHHHHHHHHHHT-CCCEEESTTSCHHHHHHHHHTTSSTT-----------
T ss_pred HHHHHHHHHHH---hhCCCeEEEEechHHHHHHHHHHHHhCC-CCEEEEeCCCCHHHHHHHHHHhhCCC-----------
Confidence 34445555544 3357899999999999999999999988 79999999999999999999999862
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcccCC
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTCLAA 147 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~~~~ 147 (159)
.+...+|++|.+ ++.|+|++.+++||+||+|||+..+.||+||+.|.
T Consensus 623 ---------~~~~v~LlSt~a----gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~Ri 669 (800)
T 3mwy_W 623 ---------SNDFVFLLSTRA----GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRI 669 (800)
T ss_dssp ---------CSCCCEEEEHHH----HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCS
T ss_pred ---------CCceEEEEeccc----ccCCCCccccceEEEecCCCChhhHHHHHHHHHhc
Confidence 113469999999 99999999999999999999999999999999553
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=8.5e-15 Score=140.34 Aligned_cols=100 Identities=18% Similarity=0.262 Sum_probs=85.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC----C--------------------------------CccEEEeecCCCHHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A--------------------------------DISFSSLHSDLAETER 65 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~----~--------------------------------~i~~~~l~~~~~~~~R 65 (159)
...++++||||+|++.|+.+++.|.+. + ..-+.+.||+|++++|
T Consensus 314 ~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R 393 (1724)
T 4f92_B 314 HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDR 393 (1724)
T ss_dssp CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHH
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHH
Confidence 455689999999999999888887642 0 0127889999999999
Q ss_pred HHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----ccC------CCChh
Q 031433 66 TLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----YEL------PTKKE 135 (159)
Q Consensus 66 ~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----~d~------P~~~~ 135 (159)
..+.+.|++| .++|||||+. +++|+|+|..++||. ||. |-++.
T Consensus 394 ~~vE~~F~~G-----------------------~i~vlvaTsT----La~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~ 446 (1724)
T 4f92_B 394 TLVEDLFADK-----------------------HIQVLVSTAT----LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGAL 446 (1724)
T ss_dssp HHHHHHHHTT-----------------------CCCEEEECHH----HHHHSCCCBSEEEEECCEEEETTTTEEEECCHH
T ss_pred HHHHHHHHCC-----------------------CCeEEEEcch----hHhhCCCCCceEEEeCCEEecCcCCCcccCCHH
Confidence 9999999999 8999999999 999999999999995 553 56899
Q ss_pred HHHhhhhcccCCC
Q 031433 136 TYIRRMTTCLAAG 148 (159)
Q Consensus 136 ~yi~R~GR~~~~~ 148 (159)
+|.||+||+||.+
T Consensus 447 ~~~Qm~GRAGR~g 459 (1724)
T 4f92_B 447 DILQMLGRAGRPQ 459 (1724)
T ss_dssp HHHHHHTTBSCTT
T ss_pred HHHHhhhhccCCC
Confidence 9999999998864
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.52 E-value=3.2e-14 Score=136.41 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=88.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC----C-----------------------------CccEEEeecCCCHHHHHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL----A-----------------------------DISFSSLHSDLAETERTLI 68 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~----~-----------------------------~i~~~~l~~~~~~~~R~~~ 68 (159)
...++++||||+|++.|+.++..|... . ...+..+|++|++++|..+
T Consensus 1152 ~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~V 1231 (1724)
T 4f92_B 1152 HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLV 1231 (1724)
T ss_dssp HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHH
T ss_pred hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHH
Confidence 456789999999999999888766431 0 0137889999999999999
Q ss_pred HHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEE----------ccCCCChhHHH
Q 031433 69 LEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLIN----------YELPTKKETYI 138 (159)
Q Consensus 69 l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~----------~d~P~~~~~yi 138 (159)
.+.|++| .++|||||+. +++|+|+|...+||. ...|.++.+|+
T Consensus 1232 E~lF~~G-----------------------~i~VLvaT~t----lA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~ 1284 (1724)
T 4f92_B 1232 EQLFSSG-----------------------AIQVVVASRS----LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVL 1284 (1724)
T ss_dssp HHHHHHT-----------------------SBCEEEEEGG----GSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHH
T ss_pred HHHHHCC-----------------------CCeEEEEChH----HHcCCCCCccEEEEecCccccCcccccCCCCHHHHH
Confidence 9999999 8999999999 999999999999993 34577899999
Q ss_pred hhhhcccCCC----CeEEEE
Q 031433 139 RRMTTCLAAG----TSFSDI 154 (159)
Q Consensus 139 ~R~GR~~~~~----g~~i~~ 154 (159)
||+||+||.+ |.++.+
T Consensus 1285 Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1285 QMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHTTBCCTTTCSCEEEEEE
T ss_pred HhhccccCCCCCCceEEEEE
Confidence 9999998864 555543
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.37 E-value=1.3e-12 Score=120.39 Aligned_cols=104 Identities=9% Similarity=0.106 Sum_probs=83.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-----------CccE-EEeecC----------C----------CH---------
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-----------DISF-SSLHSD----------L----------AE--------- 62 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-----------~i~~-~~l~~~----------~----------~~--------- 62 (159)
.+.+++|||+|++.|..+++.|.+.+ .+++ .++|++ + ++
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 34689999999999999999997643 1344 455542 2 22
Q ss_pred --------------------HHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCC
Q 031433 63 --------------------TERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIVVTDACLPLLSSGESAISA 122 (159)
Q Consensus 63 --------------------~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v 122 (159)
.+|..++++|+++ ++++||+||+ +.+|+|+|.+
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-----------------------~i~ILIvvd~----lltGfDiP~l 668 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-----------------------DIDLLIVVGM----FLTGFDAPTL 668 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-----------------------SSSEEEESST----TSSSCCCTTE
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcC-----------------------CCeEEEEcch----HHhCcCcccc
Confidence 1478899999998 8999999999 9999999999
Q ss_pred CeEEEccCCCChhHHHhhhhcccCCC------CeEEEEE
Q 031433 123 RVLINYELPTKKETYIRRMTTCLAAG------TSFSDII 155 (159)
Q Consensus 123 ~~VI~~d~P~~~~~yi~R~GR~~~~~------g~~i~~v 155 (159)
.++++|.|.+...|+||+||++|.. |.++.|+
T Consensus 669 -~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 669 -NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp -EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred -cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 7889999999999999999996643 5555543
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.49 E-value=2.4e-07 Score=79.82 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.+..+.. . .+..++||++|.+.++.+++.|... . ...++.. .+|.+++++|+.+
T Consensus 370 ~~~~~~l~~~~~-~-~~g~~lvff~S~~~~~~v~~~l~~~---~-~~~q~~~--~~~~~~l~~f~~~------------- 428 (540)
T 2vl7_A 370 PIYSILLKRIYE-N-SSKSVLVFFPSYEMLESVRIHLSGI---P-VIEENKK--TRHEEVLELMKTG------------- 428 (540)
T ss_dssp HHHHHHHHHHHH-T-CSSEEEEEESCHHHHHHHHTTCTTS---C-EEESTTT--CCHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEeCCHHHHHHHHHHhccC---c-eEecCCC--CcHHHHHHHHhcC-------------
Confidence 345566665654 2 4568999999999999999988653 2 4556654 4688899999886
Q ss_pred CCCCCCCCCCceeEEE--EecCCCCCCcCCCCCCC----CCeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIV--VTDACLPLLSSGESAIS----ARVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV--~Td~~~~~~~rGid~~~----v~~VI~~d~P~ 132 (159)
. .||+ +|+. +++|||+++ +++||++++|.
T Consensus 429 ----------~-~il~~V~~~~----~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 429 ----------K-YLVMLVMRAK----ESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp ----------C-CEEEEEC-------------------CEEEEEEESCCC
T ss_pred ----------C-eEEEEEecCc----eecceecCCCcccccEEEEECCCC
Confidence 3 5666 8899 999999997 89999999994
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.00 E-value=2.8e-05 Score=70.81 Aligned_cols=44 Identities=14% Similarity=0.174 Sum_probs=36.8
Q ss_pred eecCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHh
Q 031433 3 VSFTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVS 46 (159)
Q Consensus 3 v~~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~ 46 (159)
||.+..++...+.+.+......+.++||+|.|.+..+.|++.|.
T Consensus 421 vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 421 VYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 56667777777777776545668999999999999999999999
No 73
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.00 E-value=7.1e-05 Score=60.95 Aligned_cols=101 Identities=9% Similarity=0.105 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQS 87 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~ 87 (159)
...|.+||..+ ...+.|++||++..++.+.+.++|...+ +...-+.|....++++. .+.
T Consensus 111 f~~L~~LL~~l---~~~~~kVLIfsq~t~~LDilE~~l~~~~-~~y~RlDG~~~~~~~k~-----~~~------------ 169 (328)
T 3hgt_A 111 FSVLRDLINLV---QEYETETAIVCRPGRTMDLLEALLLGNK-VHIKRYDGHSIKSAAAA-----NDF------------ 169 (328)
T ss_dssp HHHHHHHHHHH---TTSCEEEEEEECSTHHHHHHHHHHTTSS-CEEEESSSCCC------------CC------------
T ss_pred HHHHHHHHHHH---HhCCCEEEEEECChhHHHHHHHHHhcCC-CceEeCCCCchhhhhhc-----ccC------------
Confidence 33444555544 3357899999999999999999999987 58889998855432111 122
Q ss_pred CCCCCCCCCCCceeEEEEecCCCCCCcCCCC-----CCCCCeEEEccCCCChhHH-Hhhhhcc
Q 031433 88 GDESETGKDEHKSHMIVVTDACLPLLSSGES-----AISARVLINYELPTKKETY-IRRMTTC 144 (159)
Q Consensus 88 ~~~~~~~~~~~~~~vLV~Td~~~~~~~rGid-----~~~v~~VI~~d~P~~~~~y-i~R~GR~ 144 (159)
...+.+.|.. ..-|++ ...++.||-||.-|++..= +|.+-|+
T Consensus 170 -----------~~~i~Lltsa----g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~ 217 (328)
T 3hgt_A 170 -----------SCTVHLFSSE----GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQY 217 (328)
T ss_dssp -----------SEEEEEEESS----CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCC
T ss_pred -----------CceEEEEECC----CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHH
Confidence 4555555666 566675 7899999999999999874 7766555
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.94 E-value=0.0015 Score=57.09 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
.+.+.+..+.. . .+..++||++|.+..+.+++.|+.. ..- ...+++..+|..++++|+ +
T Consensus 435 ~~~~~i~~l~~-~-~~g~~lvlF~Sy~~l~~v~~~l~~~---~~~-~~q~~~~~~~~~ll~~f~-~-------------- 493 (620)
T 4a15_A 435 RMATVIEDIIL-K-VKKNTIVYFPSYSLMDRVENRVSFE---HMK-EYRGIDQKELYSMLKKFR-R-------------- 493 (620)
T ss_dssp HHHHHHHHHHH-H-HCSCEEEEESCHHHHHHHTSSCCSC---CEE-CCTTCCSHHHHHHHHHHT-T--------------
T ss_pred HHHHHHHHHHH-h-CCCCEEEEeCCHHHHHHHHHHHHhc---chh-ccCCCChhHHHHHHHHhc-c--------------
Confidence 34444444543 2 2467999999999999999998732 222 666777788999999999 6
Q ss_pred CCCCCCCCCceeEEEEec--CCCCCCcCCCCCCC--CCeEEEccCCC
Q 031433 90 ESETGKDEHKSHMIVVTD--ACLPLLSSGESAIS--ARVLINYELPT 132 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td--~~~~~~~rGid~~~--v~~VI~~d~P~ 132 (159)
...||+++. . +.+|+|+++ .+.||...+|.
T Consensus 494 ---------~~~vL~~v~~gs----f~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 494 ---------DHGTIFAVSGGR----LSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp ---------SCCEEEEETTSC----C--------CCCCEEEESSCCC
T ss_pred ---------CCcEEEEEecCc----eeccccCCCCceEEEEEEcCCC
Confidence 678999984 7 999999976 56799988884
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.27 E-value=0.019 Score=51.55 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
+.+++|.++++.-++..++.+++. + +.+..+||+++..+|...++...+| ..
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-i~v~~l~G~~~~~~r~~~~~~l~~g-----------------------~~ 472 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFN-IHVALLIGATTPSEKEKIKSGLRNG-----------------------QI 472 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSS-CCEEECCSSSCHHHHHHHHHHHHSS-----------------------CC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcC-ceEEEEeCCCCHHHHHHHHHHHhcC-----------------------CC
Confidence 589999999999888877776653 5 7999999999999999999999998 89
Q ss_pred eEEEEecCCCCCCcCCCCCCCCCeEEEcc
Q 031433 101 HMIVVTDACLPLLSSGESAISARVLINYE 129 (159)
Q Consensus 101 ~vLV~Td~~~~~~~rGid~~~v~~VI~~d 129 (159)
+|+|+|.. ++...+.+.++++||--+
T Consensus 473 ~IvVgT~~---ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 473 DVVIGTHA---LIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp CEEEECTT---HHHHCCCCSCCCEEEEES
T ss_pred CEEEECHH---HHhhhhhccCCceEEecc
Confidence 99999986 355678889999888544
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=96.18 E-value=0.031 Score=45.42 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=65.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhc---CCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~---~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.++++.-+..+++.++. .+ +.+..+||+.+..+|...++.+..+ .
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~v~~~~g~~~~~~~~~~~~~l~~~-----------------------~ 117 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEK-VKIFGFYSSMKKEEKEKFEKSFEED-----------------------D 117 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSS-CCEEECCTTSCHHHHHHHHHHHHHT-----------------------C
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCC-ceEEEEECCCChhhHHHHHHHhhcC-----------------------C
Confidence 4568999999999999999999988 35 7999999999999999999999887 7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccC
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYEL 130 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~ 130 (159)
.+|+|+|+-.+--.-+-++...+++||.=+.
T Consensus 118 ~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEa 148 (414)
T 3oiy_A 118 YHILVFSTQFVSKNREKLSQKRFDFVFVDDV 148 (414)
T ss_dssp CSEEEEEHHHHHHCHHHHTTCCCSEEEESCH
T ss_pred CCEEEECHHHHHHHHHHhccccccEEEEeCh
Confidence 8999999752100011255567888875443
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=95.59 E-value=0.064 Score=45.87 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
+.+.+.+..+.. . .+..++||++|.+..+.+++. .+ ..+..=..+++. ...++.|+..
T Consensus 379 ~~l~~~i~~l~~-~-~~g~~lvlF~Sy~~l~~v~~~---~~-~~v~~q~~~~~~---~~~~~~~~~~------------- 436 (551)
T 3crv_A 379 KRYADYLLKIYF-Q-AKANVLVVFPSYEIMDRVMSR---IS-LPKYVESEDSSV---EDLYSAISAN------------- 436 (551)
T ss_dssp HHHHHHHHHHHH-H-CSSEEEEEESCHHHHHHHHTT---CC-SSEEECCSSCCH---HHHHHHTTSS-------------
T ss_pred HHHHHHHHHHHH-h-CCCCEEEEecCHHHHHHHHHh---cC-CcEEEcCCCCCH---HHHHHHHHhc-------------
Confidence 445555555554 2 345899999999999998873 23 344443345554 4467777643
Q ss_pred CCCCCCCCCCceeEEEEe--cCCCCCCcCCCCCC-----CCCeEEEccCCC
Q 031433 89 DESETGKDEHKSHMIVVT--DACLPLLSSGESAI-----SARVLINYELPT 132 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~T--d~~~~~~~rGid~~-----~v~~VI~~d~P~ 132 (159)
.-.||++| .- +.+|||++ .++.||...+|.
T Consensus 437 ----------~~~vl~~v~gg~----~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 437 ----------NKVLIGSVGKGK----LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp ----------SSCEEEEESSCC----SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ----------CCeEEEEEecce----ecccccccccCCcceeEEEEEcCCC
Confidence 34799998 57 99999999 477899888774
No 78
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.54 E-value=0.15 Score=47.52 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=66.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
..+.++||.++++.-+..+++.+++.+ .+.+..+||+++..+|...++.+..+ ..
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-----------------------~~ 175 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-----------------------DY 175 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-----------------------CC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-----------------------CC
Confidence 456899999999999999999999832 26999999999999999999999987 79
Q ss_pred eEEEEecCCCC-CCcCCCCCCCCCeEEEccC
Q 031433 101 HMIVVTDACLP-LLSSGESAISARVLINYEL 130 (159)
Q Consensus 101 ~vLV~Td~~~~-~~~rGid~~~v~~VI~~d~ 130 (159)
+|+|+|.-.+- ++.+ ++..++++||.=+.
T Consensus 176 ~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREK-LSQKRFDFVFVDDV 205 (1104)
T ss_dssp SEEEEEHHHHHHSHHH-HHTSCCSEEEESCH
T ss_pred CEEEECHHHHHHHHHh-hcccCcCEEEEeCC
Confidence 99999975210 0111 45678888886443
No 79
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.24 E-value=0.14 Score=47.90 Aligned_cols=77 Identities=17% Similarity=0.115 Sum_probs=64.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+++++|.|+|+.-++..++.+++. + +.+..+++..+..++...++....| .
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~-i~v~~l~~~~~~~~~~~~~~~l~~g-----------------------~ 706 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEG-----------------------K 706 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTT-CCEEEESTTSCHHHHHHHHHHHHTT-----------------------C
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCC-CeEEEEeCCCCHHHHHHHHHHHhcC-----------------------C
Confidence 4679999999999998888877643 4 6899999999999999999999998 8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
.+|+|+|.- ++...+.+.++.+||-
T Consensus 707 ~dIvV~T~~---ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHK---LLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTH---HHHSCCCCSSEEEEEE
T ss_pred CCEEEECHH---HHhCCccccccceEEE
Confidence 999999954 2666688888888774
No 80
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.99 E-value=0.32 Score=41.30 Aligned_cols=60 Identities=7% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
..++||.++++.-++...+.|+..+ +.+..+|++.+..++...++....+ ..++++
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~ilv 120 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG-VAAACLNSTQTREQQLEVMTGCRTG-----------------------QIRLLY 120 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHHHHHHHT-----------------------CCSEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhcC-----------------------CCCEEE
Confidence 3679999999999999999999987 7999999999999999999999887 788888
Q ss_pred EecC
Q 031433 105 VTDA 108 (159)
Q Consensus 105 ~Td~ 108 (159)
+|+-
T Consensus 121 ~Tpe 124 (523)
T 1oyw_A 121 IAPE 124 (523)
T ss_dssp ECHH
T ss_pred ECHH
Confidence 8853
No 81
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.87 E-value=0.5 Score=35.84 Aligned_cols=85 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGD 89 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~ 89 (159)
++..+.. ...+.++||.|+++.-++.+++.+++. + +.+..++|+.+...+...+ ..
T Consensus 101 il~~l~~-~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---~~--------------- 160 (249)
T 3ber_A 101 ILNALLE-TPQRLFALVLTPTRELAFQISEQFEALGSSIG-VQSAVIVGGIDSMSQSLAL---AK--------------- 160 (249)
T ss_dssp HHHHHHH-SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECTTSCHHHHHHHH---HT---------------
T ss_pred HHHHHhc-CCCCceEEEEeCCHHHHHHHHHHHHHHhccCC-eeEEEEECCCChHHHHHHh---cC---------------
Confidence 4444443 444578999999999998888777654 4 6899999998866544322 23
Q ss_pred CCCCCCCCCceeEEEEecCCCC-CC--cCCCCCCCCCeEEE
Q 031433 90 ESETGKDEHKSHMIVVTDACLP-LL--SSGESAISARVLIN 127 (159)
Q Consensus 90 ~~~~~~~~~~~~vLV~Td~~~~-~~--~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+- ++ ..++++..+++||.
T Consensus 161 ---------~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 161 ---------KPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp ---------CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred ---------CCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 5789999953100 01 14567888888775
No 82
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.50 E-value=0.46 Score=34.35 Aligned_cols=78 Identities=8% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
..+.++||.|+++.-++.+.+.+++. +.+.+..++|+.+..+... .+..
T Consensus 69 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------ 121 (206)
T 1vec_A 69 KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDD------------------------ 121 (206)
T ss_dssp SCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTS------------------------
T ss_pred CCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCC------------------------
Confidence 34578999999999999888887653 1468899999988665432 2222
Q ss_pred ceeEEEEecCCC-CCCc-CCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACL-PLLS-SGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~-~~~~-rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+ ..+. ...++..++++|.
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 578999997310 0012 2356778888774
No 83
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=93.40 E-value=0.18 Score=33.57 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++++||++-..+...+..|+..|+ ++..+.|++.
T Consensus 52 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~-~v~~l~GG~~ 90 (108)
T 3gk5_A 52 LERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQ 90 (108)
T ss_dssp SCTTSCEEEECSSSHHHHHHHHHHHTTTC-CEEEETTHHH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCC-CEEEEcCcHH
Confidence 35678999999999999999999999997 9999999863
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.05 E-value=0.56 Score=34.35 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=54.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
..++||.|+++.-++.+++.+++. +.+.+..++|+.+..++.+. +.++ ..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~-----------------------~~ 135 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN-----------------------CP 135 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHS-----------------------CC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcC-----------------------CC
Confidence 458999999999999888877764 13789999999987765543 3444 57
Q ss_pred eEEEEecCCCC-CC-cCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP-LL-SSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~-~~-~rGid~~~v~~VI~ 127 (159)
+|+|+|.-.+- ++ ...+++..+++||.
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 89999963100 01 23467788888774
No 85
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.92 E-value=0.34 Score=36.09 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCC----CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLA----DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~----~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
...+.++||.|++++-++.+.+.+++.+ .+.+..++|+.+..++...+ .
T Consensus 89 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~----------------------- 141 (230)
T 2oxc_A 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----K----------------------- 141 (230)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----T-----------------------
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----c-----------------------
Confidence 3456799999999999999888887642 36889999998877654332 1
Q ss_pred CceeEEEEecCCCCC-C-cCCCCCCCCCeEEE
Q 031433 98 HKSHMIVVTDACLPL-L-SSGESAISARVLIN 127 (159)
Q Consensus 98 ~~~~vLV~Td~~~~~-~-~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+-. + ...+++..+++||.
T Consensus 142 -~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp -SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred -CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 47899999741000 1 23456677777774
No 86
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=92.65 E-value=0.48 Score=29.74 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+.+..+. ..+.++++++|++-..+...+..|++.|+-++..+ |++.
T Consensus 25 p~~~l~~~~~~l~--~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 25 PLKEVKERIATAV--PDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CHHHHHHHHHHHC--CCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CHHHHHHHHHHhC--CCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3444555555431 24568999999999899999999999985456666 7753
No 87
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.47 E-value=0.29 Score=42.41 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHh--cccccccccccccCCCCCCCCCCCCceeE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFR--HTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
..++||.++++.-++...+.|+..| +.+..++|+++..++..+++.+. .+ ..+|
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g-i~~~~l~~~~~~~~~~~~~~~l~~~~~-----------------------~~~I 139 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG-ISATMLNASSSKEHVKWVHAEMVNKNS-----------------------ELKL 139 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT-CCEEECCSSCCHHHHHHHHHHHHCTTC-----------------------CCCE
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC-CcEEEEeCCCCHHHHHHHHHHhhcccC-----------------------CCCE
Confidence 4689999999999999999999987 79999999999999998888884 34 6889
Q ss_pred EEEecC
Q 031433 103 IVVTDA 108 (159)
Q Consensus 103 LV~Td~ 108 (159)
+++|+-
T Consensus 140 lv~Tpe 145 (591)
T 2v1x_A 140 IYVTPE 145 (591)
T ss_dssp EEECHH
T ss_pred EEEChh
Confidence 999873
No 88
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=92.06 E-value=0.23 Score=32.83 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=32.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 45689999999999999999999999854688888875
No 89
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=91.57 E-value=0.2 Score=32.69 Aligned_cols=39 Identities=5% Similarity=0.064 Sum_probs=33.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.+++++||.+-......+..|+..|+ ++..+.|++.
T Consensus 53 l~~~~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~ 91 (100)
T 3foj_A 53 FNDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMD 91 (100)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHTTTC-EEEEETTHHH
T ss_pred CCCCCcEEEEcCCCchHHHHHHHHHHCCC-CEEEecccHH
Confidence 34568999999999999999999999996 9999998863
No 90
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=91.51 E-value=0.24 Score=37.13 Aligned_cols=78 Identities=10% Similarity=0.146 Sum_probs=46.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.++++.-++.+.+.+++.+ .+.+..++|+.+.... .+.+..+ ..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-----------------------~~ 150 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE-----------------------AP 150 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C-----------------------CC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC-----------------------CC
Confidence 56799999999999998888887642 2577888887654432 2333443 58
Q ss_pred eEEEEecCCC-CCCcC-CCCCCCCCeEEE
Q 031433 101 HMIVVTDACL-PLLSS-GESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~-~~~~r-Gid~~~v~~VI~ 127 (159)
+|+|+|.-.+ -++.+ .+++..+++||.
T Consensus 151 ~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 151 HIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp SEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 8999994200 00333 466778888774
No 91
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=91.18 E-value=0.37 Score=32.59 Aligned_cols=35 Identities=11% Similarity=0.226 Sum_probs=31.0
Q ss_pred CcEEEEe-CchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 26 LPMIVCC-SSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 26 ~k~iIF~-ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+++||+| ++-..+...+..|+..|+ ++..|.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHH
Confidence 8999999 587888899999999996 9999999874
No 92
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=91.01 E-value=0.9 Score=32.69 Aligned_cols=77 Identities=13% Similarity=0.066 Sum_probs=53.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.+.++||.|+++.-++.+.+.+++.. .+.+..++|+.+.......+ .. ..+|
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------~~~i 123 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL---LR------------------------GADA 123 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH---HH------------------------CCSE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh---hC------------------------CCCE
Confidence 46789999999999999999988762 36888999988765543332 23 4789
Q ss_pred EEEecCCCC-CC-cCCCCCCCCCeEEE
Q 031433 103 IVVTDACLP-LL-SSGESAISARVLIN 127 (159)
Q Consensus 103 LV~Td~~~~-~~-~rGid~~~v~~VI~ 127 (159)
+|+|.-.+- ++ ...+++..+++||.
T Consensus 124 ~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 124 VVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp EEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred EEECHHHHHHHHHcCCcchhhceEEEE
Confidence 999962100 01 22456778888774
No 93
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=90.98 E-value=0.2 Score=32.83 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++++++||++-......+..|+..|+ ++..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~-~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCC-CeEEeCCCH
Confidence 4568999999999899999999999996 999999885
No 94
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=90.88 E-value=0.22 Score=34.20 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|||++-..+...+..|...|+-++..+.|++.
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 457899999999888999999999988545888999873
No 95
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.84 E-value=1.1 Score=35.36 Aligned_cols=79 Identities=10% Similarity=0.194 Sum_probs=55.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
..+.++||.|+++.-++.+++.+++. +.+.+..++|+.+..+.... +..+
T Consensus 74 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~----------------------- 127 (391)
T 1xti_A 74 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKN----------------------- 127 (391)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHS-----------------------
T ss_pred CCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcC-----------------------
Confidence 34579999999999999888877764 23789999999987765543 3344
Q ss_pred ceeEEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+- +....+++..+++||.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 5789999963100 0123456778888774
No 96
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=90.47 E-value=0.81 Score=33.72 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC--CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL--ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~--~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
.+.++||.+++++-++.+.+.+++. ..+.+..++|+.+..++. +.+.+ ..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------~~~ 145 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISK------------------------GVD 145 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CH---HHHHS------------------------CCS
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcC------------------------CCC
Confidence 5688999999999999999888874 236889999887655443 23334 478
Q ss_pred EEEEecCCCC--CCcCCCCCCCCCeEEE
Q 031433 102 MIVVTDACLP--LLSSGESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~--~~~rGid~~~v~~VI~ 127 (159)
|+|+|.-.+- +....+++.++++||.
T Consensus 146 iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 146 IIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp EEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 9999953100 0233567788888774
No 97
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=90.25 E-value=0.36 Score=31.83 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|+|++-......+..|+..|+-++..+.|++.
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 457899999999888999999999998546888999863
No 98
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=89.65 E-value=0.8 Score=33.55 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
...+.++||.|+++.-++.+.+.+++. ..+.+..++|+.+..+....+ .
T Consensus 79 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~----------------------- 130 (224)
T 1qde_A 79 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-----R----------------------- 130 (224)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-----T-----------------------
T ss_pred cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-----C-----------------------
Confidence 345679999999999998888877653 136888899887654432211 1
Q ss_pred ceeEEEEecCCC--CCCcCCCCCCCCCeEEE
Q 031433 99 KSHMIVVTDACL--PLLSSGESAISARVLIN 127 (159)
Q Consensus 99 ~~~vLV~Td~~~--~~~~rGid~~~v~~VI~ 127 (159)
..+|+|+|.-.+ .+.....++..+++||.
T Consensus 131 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 367999996310 00133566777888774
No 99
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.64 E-value=1.4 Score=32.81 Aligned_cols=77 Identities=12% Similarity=0.102 Sum_probs=54.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
.+.++||.|++++-++.+.+.+++. + +.+..++|+.+..+....+ .. .
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~---~~------------------------~ 152 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACR-LKSTCIYGGAPKGPQIRDL---ER------------------------G 152 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEECTTSCHHHHHHHH---HH------------------------C
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcC-ceEEEEECCCChHHHHHHh---cC------------------------C
Confidence 4678999999999999887777653 4 6899999999877655443 33 4
Q ss_pred eeEEEEecCCCC-CCc-CCCCCCCCCeEEEc
Q 031433 100 SHMIVVTDACLP-LLS-SGESAISARVLINY 128 (159)
Q Consensus 100 ~~vLV~Td~~~~-~~~-rGid~~~v~~VI~~ 128 (159)
.+|+|+|.-.+- ++. ..+++.+++++|.-
T Consensus 153 ~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 153 VEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp CSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred CCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 789999952100 022 24577888887743
No 100
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=89.50 E-value=0.3 Score=32.42 Aligned_cols=38 Identities=5% Similarity=0.010 Sum_probs=32.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
-.++++++++|.+-......+..|++.|+ ++..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~-~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTC-EEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCC-CEEEecChH
Confidence 34578999999999999999999999984 888888876
No 101
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=88.81 E-value=0.65 Score=32.41 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 53 l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 53 LEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp SCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 345688999999999999999999999854688888885
No 102
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=88.45 E-value=0.77 Score=30.39 Aligned_cols=39 Identities=8% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+.++++|||++-..+...+..|+..|+-. ..+.|++.
T Consensus 53 ~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~ 91 (110)
T 2k0z_A 53 QHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY 91 (110)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred cCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence 3457899999999999999999999998545 88889864
No 103
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=88.15 E-value=2.4 Score=29.15 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=42.0
Q ss_pred EEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 28 MIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 28 ~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+||....+-...+...++..| +.+..++++.+...|..-+++|.+.
T Consensus 5 fvvfssdpeilkeivreikrqg-vrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHHHHHHHHHHHHc
Confidence 4788888888889999999998 7999999999999999999999875
No 104
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.85 E-value=2.9 Score=31.69 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=52.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.++++.-++.+++.+++. ..+.+..++|+........ .... ..
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~ 177 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGN------------------------GI 177 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHH------------------------CC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcC------------------------CC
Confidence 4678999999999999988888763 1257888999887665443 2333 47
Q ss_pred eEEEEecCCCC-CC--cCCCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP-LL--SSGESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~-~~--~rGid~~~v~~VI~ 127 (159)
+|+|+|.-.+- .+ ..++++..+++||-
T Consensus 178 ~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp SEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred CEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 89999941000 01 22467888888774
No 105
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=87.76 E-value=0.59 Score=29.96 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+ +++++||++-......+..|+..|+ .+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~-~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTC-CEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCC-cEEEEcccHH
Confidence 44 8999999999999999999999985 6888888864
No 106
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=87.50 E-value=0.56 Score=32.77 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+++||||++-......+..|+..|+-++..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999999888889999999998546899999874
No 107
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=87.23 E-value=2.3 Score=31.35 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.|+++.-++.+.+.+++.+ .+.+..++|+.+.......+ . ..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~-----------------------~~ 147 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----N-----------------------NI 147 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----T-----------------------TC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----C-----------------------CC
Confidence 46789999999999998888887642 26888999987655443322 2 47
Q ss_pred eEEEEecCCCC-CCcC--CCCCCCCCeEEE
Q 031433 101 HMIVVTDACLP-LLSS--GESAISARVLIN 127 (159)
Q Consensus 101 ~vLV~Td~~~~-~~~r--Gid~~~v~~VI~ 127 (159)
+|+|+|.-.+- .+.+ .++...+++||.
T Consensus 148 ~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 148 NILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp SEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 89999963100 0112 366677887774
No 108
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=87.19 E-value=0.58 Score=32.21 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=33.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.++++++|++-..+...+..|+..|+-++..+.|++.
T Consensus 89 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 89 DSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456899999999999999999999998546888888863
No 109
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=86.88 E-value=0.46 Score=32.96 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=33.6
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.++++|||++-......+..|+..|+-++..+.|++
T Consensus 79 l~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 79 LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CCTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 456789999999999999999999999854688999986
No 110
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=86.85 E-value=3.1 Score=32.93 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=52.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
.+.++||.|+++.-++.+.+.+++.. .+.+..++|+....+.... .. + ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~-----------------------~~ 140 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---LN-E-----------------------TV 140 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---TT-S-----------------------CC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---hc-C-----------------------CC
Confidence 45789999999999988888877641 3688899998876543221 22 2 57
Q ss_pred eEEEEecCCC-CCC-cCCCCCCCCCeEEEc
Q 031433 101 HMIVVTDACL-PLL-SSGESAISARVLINY 128 (159)
Q Consensus 101 ~vLV~Td~~~-~~~-~rGid~~~v~~VI~~ 128 (159)
+|+|+|.-.+ .++ ....++.++++||.=
T Consensus 141 ~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiD 170 (400)
T 1s2m_A 141 HILVGTPGRVLDLASRKVADLSDCSLFIMD 170 (400)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred CEEEEchHHHHHHHHhCCcccccCCEEEEe
Confidence 8999994200 002 233567788887743
No 111
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=86.81 E-value=0.6 Score=31.63 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=32.0
Q ss_pred CCCCCcEEEEeCchHH--HHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDE--LDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~--~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..++++++|+|++-.. +...+..|+..|+ ++..|.|++
T Consensus 68 l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~-~v~~l~GG~ 107 (124)
T 3flh_A 68 LDPAKTYVVYDWTGGTTLGKTALLVLLSAGF-EAYELAGAL 107 (124)
T ss_dssp SCTTSEEEEECSSSSCSHHHHHHHHHHHHTC-EEEEETTHH
T ss_pred CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCcH
Confidence 4457899999999877 7889999999995 888888876
No 112
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=86.67 E-value=0.45 Score=32.70 Aligned_cols=38 Identities=3% Similarity=0.139 Sum_probs=32.8
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 121 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGF 121 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCH
Confidence 35689999999998899999999999854699999986
No 113
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=85.81 E-value=0.76 Score=31.55 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=33.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++|||++-......+..|+..|+-++..+.|++.
T Consensus 72 ~~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 72 PENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 346899999999988889999999998546888999984
No 114
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=85.72 E-value=3.1 Score=33.06 Aligned_cols=78 Identities=9% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.|+++.-++.+++.++..+ .+.+..++|+....+....+ .. .
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~------------------------~ 155 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DY------------------------G 155 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HH------------------------C
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHh---hc------------------------C
Confidence 456899999999999998888777542 36888899998876654433 23 3
Q ss_pred eeEEEEecCCC-CCCcC-CCCCCCCCeEEE
Q 031433 100 SHMIVVTDACL-PLLSS-GESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~-~~~~r-Gid~~~v~~VI~ 127 (159)
.+|+|+|.-.+ -++.+ .++...+++||.
T Consensus 156 ~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 156 QHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 68899984200 00223 466677787774
No 115
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.68 E-value=2.3 Score=33.96 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=36.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCc---cEEEeecCCCHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADI---SFSSLHSDLAETERTLI 68 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i---~~~~l~~~~~~~~R~~~ 68 (159)
.+.++||.|+++.-++...+.+++..+. .+..+||+....++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 98 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKA 98 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhh
Confidence 4689999999999999888888876224 89999999988765443
No 116
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=85.58 E-value=0.73 Score=36.09 Aligned_cols=77 Identities=4% Similarity=-0.017 Sum_probs=47.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEH 98 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
....++||.++|++-+..+.+.++.. +.+.+..++|+.....+. . .
T Consensus 160 ~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~-----------------------~ 209 (300)
T 3fmo_B 160 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------K-----------------------I 209 (300)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------C-----------------------C
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------c-----------------------C
Confidence 34457999999999888877776653 235666676654422110 1 1
Q ss_pred ceeEEEEecCCC-CCC-c-CCCCCCCCCeEEEcc
Q 031433 99 KSHMIVVTDACL-PLL-S-SGESAISARVLINYE 129 (159)
Q Consensus 99 ~~~vLV~Td~~~-~~~-~-rGid~~~v~~VI~~d 129 (159)
..+|+|+|.-.+ -++ . ..+++..++++|.-+
T Consensus 210 ~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred CCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 568999997410 001 1 357788999888533
No 117
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=85.44 E-value=0.87 Score=33.94 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=52.2
Q ss_pred HHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCC
Q 031433 14 LLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDE 90 (159)
Q Consensus 14 ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~ 90 (159)
++..+......+.++||.+++++-++.+++.+++.. .+.+..++|+..... .+...
T Consensus 87 ~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--------------- 145 (245)
T 3dkp_A 87 ILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK------KFGPK--------------- 145 (245)
T ss_dssp HHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT------TTSTT---------------
T ss_pred HHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH------Hhhhh---------------
Confidence 344333323456789999999999998888887641 256777776532211 11110
Q ss_pred CCCCCCCCceeEEEEecCCCC-CCcC---CCCCCCCCeEEEc
Q 031433 91 SETGKDEHKSHMIVVTDACLP-LLSS---GESAISARVLINY 128 (159)
Q Consensus 91 ~~~~~~~~~~~vLV~Td~~~~-~~~r---Gid~~~v~~VI~~ 128 (159)
.....+|+|+|.-.+- ++.+ .+++.++++||.=
T Consensus 146 -----~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 146 -----SSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp -----SCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred -----hcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 1126789999953100 0112 4788889988753
No 118
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=85.03 E-value=3.7 Score=32.20 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=36.5
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLIL 69 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l 69 (159)
...+.++||.|+++.-++.+.+.+.+. ..+.+..++|+....+....+
T Consensus 86 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 136 (394)
T 1fuu_A 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL 136 (394)
T ss_dssp TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc
Confidence 345679999999999999888877653 126899999998877655443
No 119
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=84.35 E-value=0.89 Score=31.79 Aligned_cols=38 Identities=11% Similarity=0.147 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCch--HHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSR--DELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~--~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++||||++- ..+...+..|+..|+ ++..|.|++.
T Consensus 70 ~~~~~ivvyC~~g~~~rs~~aa~~L~~~G~-~v~~l~GG~~ 109 (144)
T 3nhv_A 70 SKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIE 109 (144)
T ss_dssp CTTSEEEEECSCTTCCHHHHHHHHHHHTTC-EEEEEESHHH
T ss_pred CCCCeEEEEECCCCccHHHHHHHHHHHCCC-eEEEeCCcHH
Confidence 4568999999997 578899999999995 8999999863
No 120
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=84.22 E-value=0.91 Score=33.27 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=30.9
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC-------CccEEEeecCCCHH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA-------DISFSSLHSDLAET 63 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~-------~i~~~~l~~~~~~~ 63 (159)
..+.++||.|+++.-++.+.+.+++.. .+.+..++|+.+..
T Consensus 70 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 70 RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQ 117 (219)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHH
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHH
Confidence 346789999999999988888776531 36788888887543
No 121
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.03 E-value=2.7 Score=31.34 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=51.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||.|++++-++.+.+.+++. ..+.+..++|+.+..+... .... ..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~~ 152 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---EVQM------------------------GCH 152 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---HHSS------------------------CCS
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---HhCC------------------------CCC
Confidence 468999999999999888877653 1267888999887655432 2233 478
Q ss_pred EEEEecCCCCC-C-cCCCCCCCCCeEEE
Q 031433 102 MIVVTDACLPL-L-SSGESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~~-~-~rGid~~~v~~VI~ 127 (159)
|+|+|.-.+-. + ...+++..+++||.
T Consensus 153 Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 153 LLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 99999741000 1 22356778888774
No 122
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=83.99 E-value=3.6 Score=33.56 Aligned_cols=76 Identities=8% Similarity=0.110 Sum_probs=52.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCcee
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSH 101 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (159)
+.++||.|+|++-+..+.+.+++.. .+.+..++|+.+..+.... ... ..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~------------------------~~~ 181 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNEC---ITR------------------------GCH 181 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHH---HTT------------------------CCS
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHH---hhc------------------------CCC
Confidence 5799999999999999988877642 3678899999987664432 333 478
Q ss_pred EEEEecCCCC-CCcC-CCCCCCCCeEEE
Q 031433 102 MIVVTDACLP-LLSS-GESAISARVLIN 127 (159)
Q Consensus 102 vLV~Td~~~~-~~~r-Gid~~~v~~VI~ 127 (159)
|+|+|.-.+- ++.+ .+++..++++|.
T Consensus 182 Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 182 VVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp EEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred EEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 9999953100 0222 356788888774
No 123
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=83.43 E-value=7 Score=25.25 Aligned_cols=64 Identities=19% Similarity=0.369 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeC--chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCS--SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~n--s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
....+.++++.+ ...+++.+||+| +...+++..+.-++.| +...++.+. ++++-.+-.++|.+.
T Consensus 36 ssqdirdiiksm---kdngkplvvfvngasqndvnefqneakkeg-vsydvlkst-dpeeltqrvreflkt 101 (112)
T 2lnd_A 36 SSQDIRDIIKSM---KDNGKPLVVFVNGASQNDVNEFQNEAKKEG-VSYDVLKST-DPEELTQRVREFLKT 101 (112)
T ss_dssp SHHHHHHHHHHH---TTCCSCEEEEECSCCHHHHHHHHHHHHHHT-CEEEEEECC-CHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHH---HhcCCeEEEEecCcccccHHHHHHHHHhcC-cchhhhccC-CHHHHHHHHHHHHHh
Confidence 345667777755 456899999998 5566777777777777 677777654 566667777788764
No 124
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.67 E-value=6.6 Score=31.09 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=51.5
Q ss_pred CcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeE
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHM 102 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 102 (159)
.++||.++++.-++.+++.+++. ..+.+..++|+.+..+... .+.. ..+|
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~------------------------~~~I 154 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER------------------------GCHL 154 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT------------------------CCSE
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC------------------------CCCE
Confidence 67999999999999888887753 2368999999988765433 3333 4789
Q ss_pred EEEecCCCC-CCc-CCCCCCCCCeEEE
Q 031433 103 IVVTDACLP-LLS-SGESAISARVLIN 127 (159)
Q Consensus 103 LV~Td~~~~-~~~-rGid~~~v~~VI~ 127 (159)
+|+|.-.+- ++. ..+++..+++||.
T Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 155 LVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp EEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred EEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 999973100 012 2356777888774
No 125
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=81.02 E-value=4.1 Score=33.62 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=48.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCce
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKS 100 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (159)
+.++||.|+++.-+....+.+++. + +.+..+||+.+...+.. .+.. ..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~---~~~~------------------------~~ 106 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSVE---KVIE------------------------DS 106 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEECCCC-----CHH---HHHH------------------------HC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEeCCCCcchhHH---HhhC------------------------CC
Confidence 689999999999988888777764 5 79999999987665432 2223 46
Q ss_pred eEEEEecCCCCC-CcCC-C-CCCCCCeEEEc
Q 031433 101 HMIVVTDACLPL-LSSG-E-SAISARVLINY 128 (159)
Q Consensus 101 ~vLV~Td~~~~~-~~rG-i-d~~~v~~VI~~ 128 (159)
+|+|+|.-.+-- +.++ + .+..+++||.=
T Consensus 107 ~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 107 DIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp SEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred CEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 789988641000 1122 3 56778877753
No 126
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.73 E-value=3.3 Score=34.10 Aligned_cols=40 Identities=5% Similarity=0.084 Sum_probs=32.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETER 65 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R 65 (159)
+.++||.|+++.-+....+.+++. + +.+..++|+.+...+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLG-YNIASISGATSDSVS 95 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECTTTGGGSC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCC-cEEEEEcCCCcchhh
Confidence 689999999999888877777664 5 799999999865544
No 127
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=80.21 E-value=5.1 Score=30.49 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~ 60 (159)
+.+.+.+..+- ..+++++|+||.+-..+...+..|++ .|+-++..+.|++
T Consensus 212 ~~l~~~~~~~~--~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 212 EELAKLYADAG--LDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHHT--CCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred HHHHHHHHHcC--CCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 34555554321 34578999999999988889999986 7854688888875
No 128
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=80.18 E-value=1.8 Score=34.43 Aligned_cols=79 Identities=14% Similarity=0.142 Sum_probs=52.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.|+++.-++.+.+.+++.+ ...+..++|+...... ++....+ .
T Consensus 106 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------------------~ 159 (414)
T 3eiq_A 106 LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME-----------------------A 159 (414)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT-----------------------C
T ss_pred CCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC-----------------------C
Confidence 356899999999999988888887642 2577888887765543 3444444 6
Q ss_pred eeEEEEecCCC-CCC-cCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACL-PLL-SSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~-~~~-~rGid~~~v~~VI~ 127 (159)
.+|+|+|.-.+ ..+ ...++...+++||.
T Consensus 160 ~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 160 PHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 88999995200 002 22356677777764
No 129
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=79.26 E-value=2.3 Score=33.14 Aligned_cols=39 Identities=10% Similarity=0.177 Sum_probs=34.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++++||.+-..+...+..|...|+-++..|.|++.
T Consensus 179 ~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 179 KKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp GTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 567899999999999999999999998557889999864
No 130
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=78.84 E-value=4.5 Score=30.95 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=32.3
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHh-cCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVS-NLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~-~~~~i~~~~l~~~~ 60 (159)
.+++++||||++-..+...+..|+ ..|+-++..+.|++
T Consensus 231 ~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 231 TKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 456899999999989999999999 88854788888886
No 131
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=78.20 E-value=8.5 Score=29.27 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERT 66 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~ 66 (159)
+.++||.|+++.-++.+++.+++. ..+.+..++|+.+..+..
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQI 100 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHH
Confidence 579999999999999988888753 126889999998876543
No 132
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=78.05 E-value=1.1 Score=29.99 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=30.2
Q ss_pred CcEEEEeCchHHHHHHHHHHhcC------CCccEEEeecCCC
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNL------ADISFSSLHSDLA 61 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~------~~i~~~~l~~~~~ 61 (159)
++++|+|++-......+..|... |+.++..|.|++.
T Consensus 73 ~~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 73 VPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 48999999988888889999887 4567888999864
No 133
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=77.87 E-value=6.7 Score=34.72 Aligned_cols=41 Identities=2% Similarity=-0.011 Sum_probs=30.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERT 66 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~ 66 (159)
+.++||.|+++.-+....+.+++. + +.+..+||+.+...+.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~g~~~~~~~~ 340 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVSV 340 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGT-CCEEEECCC-----CH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCC-ceEEEEeCCcchhhhH
Confidence 689999999999998887777764 5 7999999998766543
No 134
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=77.55 E-value=2.3 Score=32.62 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=33.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++|+||.+-.++...+..|...|+-++..+.|++.
T Consensus 228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 457899999999999999999999998546889999885
No 135
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=77.05 E-value=2.6 Score=32.12 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=32.8
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+++++|+||++-..+...+..|+..|+-++..+.|++
T Consensus 220 ~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 220 ITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 345789999999998889999999999854688888876
No 136
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=76.95 E-value=3.1 Score=31.87 Aligned_cols=51 Identities=14% Similarity=-0.012 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHH-HHHHHHHHhcCCCccEEEeecCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDE-LDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~-~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.+.+.+..+- ..+++++||||++-.. +..++..|+..|+-++..|.|++
T Consensus 71 ~~~~~~~~~~~g--i~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 71 PETFAVAMRELG--VNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHHTT--CCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHHcC--CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 355556665431 2457899999998665 78889999999854788999875
No 137
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.89 E-value=4 Score=37.67 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=54.0
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC---Cc----cEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA---DI----SFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKD 96 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~---~i----~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
.+.++||.++++.-+..+++.++... ++ .+..+||+.+..++.+.++.+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---------------------- 155 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---------------------- 155 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----------------------
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----------------------
Confidence 46799999999999998888887541 25 78999999998887666555433
Q ss_pred CCceeEEEEecCCCCCCcCCCC-CCCCCeEEE
Q 031433 97 EHKSHMIVVTDACLPLLSSGES-AISARVLIN 127 (159)
Q Consensus 97 ~~~~~vLV~Td~~~~~~~rGid-~~~v~~VI~ 127 (159)
.+|+|+|+-. +..-+. +..+++||.
T Consensus 156 ---~~IlV~TP~~---L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 ---FKIVITTTQF---LSKHYRELGHFDFIFV 181 (1054)
T ss_dssp ---CSEEEEEHHH---HHHCSTTSCCCSEEEE
T ss_pred ---CCEEEEcHHH---HHHHHHHhccCCEEEE
Confidence 6789999631 111111 557777774
No 138
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=76.78 E-value=4.8 Score=31.75 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+.+..+- ..+++++||||++-. .+..++..|+..|+-++..|.|++
T Consensus 97 ~~~~~~l~~lg--i~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 97 EQFAELMDRKG--IARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHHTT--CCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcC--CCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 45555555431 345689999999866 788899999999854689999986
No 139
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=75.88 E-value=8.1 Score=35.10 Aligned_cols=43 Identities=7% Similarity=-0.008 Sum_probs=34.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTL 67 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~ 67 (159)
.+.+++|.|+|+.-+...++.+.. .| +++..+.|+++.++|..
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lg-l~v~~i~GG~~~~~r~~ 160 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLG-LTVGINLPGMPAPAKRE 160 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHH
Confidence 467899999999988777766654 35 79999999999876543
No 140
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=75.70 E-value=11 Score=34.10 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=35.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETERTL 67 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R~~ 67 (159)
.+++++|.|.|+.-+...++++... | +++..+.|+++.++|..
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lg-l~v~~i~gg~~~~~r~~ 169 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLG-LTVGLNLNSMSKDEKRE 169 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTSCHHHHHH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHH
Confidence 4679999999999988777766553 5 89999999999877654
No 141
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=75.58 E-value=2.4 Score=31.61 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=33.9
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++|+||++-.++...+..|+..| .++..+.|++.
T Consensus 181 ~~~~~~iv~~C~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~ 219 (230)
T 2eg4_A 181 LQPGQEVGVYCHSGARSAVAFFVLRSLG-VRARNYLGSMH 219 (230)
T ss_dssp CCTTCEEEEECSSSHHHHHHHHHHHHTT-CEEEECSSHHH
T ss_pred CCCCCCEEEEcCChHHHHHHHHHHHHcC-CCcEEecCcHH
Confidence 3457899999999999999999999998 68999999863
No 142
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.31 E-value=24 Score=27.01 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCHHHHH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAETERT 66 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~~~R~ 66 (159)
..+.++||.|+++.-++.+++.+++. ..+.+..++|+....+..
T Consensus 72 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 118 (367)
T 1hv8_A 72 NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQI 118 (367)
T ss_dssp SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHH
T ss_pred cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH
Confidence 45689999999999998888888763 126888899988766544
No 143
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=75.26 E-value=6.8 Score=29.77 Aligned_cols=50 Identities=8% Similarity=-0.136 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCch-HHHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSR-DELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~-~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+.+..+- ..+++++||||++- ..+..++..|+..|+-++..|.|++
T Consensus 63 ~~~~~~~~~~g--i~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 113 (277)
T 3aay_A 63 QQFSKLLSERG--IANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGR 113 (277)
T ss_dssp HHHHHHHHHHT--CCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHH
T ss_pred HHHHHHHHHcC--CCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCH
Confidence 45555555431 34568899999985 3577888899998854788999975
No 144
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=75.08 E-value=5.3 Score=30.29 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.+.+.+..+- ..++++++|+|++-. .+..++..|+..|+-++..|.|++
T Consensus 66 ~~~~~~~~~~~g--i~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 66 REQLESLFGELG--HRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp HHHHHHHHHHHT--CCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHHcC--CCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 345555665441 235689999999865 778889999999854688899975
No 145
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=74.04 E-value=4.8 Score=30.77 Aligned_cols=49 Identities=2% Similarity=-0.065 Sum_probs=35.6
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecCC
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.+.+..+- ..+++++||||++-. .+..++..|+..|+-++..|.|++
T Consensus 66 ~~~~~~~~~g--i~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~ 115 (285)
T 1uar_A 66 EFAKLMERLG--ISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGR 115 (285)
T ss_dssp HHHHHHHHTT--CCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHcC--CCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 4445554331 245689999999866 678889999999854688899875
No 146
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=73.83 E-value=4.6 Score=31.23 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+++++|+||.+-.++...+..|...|+-++..+.|++.
T Consensus 238 ~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 238 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 457899999999888888899999988545888888863
No 147
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=73.12 E-value=3.3 Score=29.03 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCcEEEEeCch---------HHHHHHHHHHhcCCCccEEEeecCC
Q 031433 25 GLPMIVCCSSR---------DELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 25 ~~k~iIF~ns~---------~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++||||++- ..+..++..|...|+ ++..|.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcH
Confidence 68999999987 457888999999985 899999985
No 148
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=71.77 E-value=12 Score=29.00 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCCCcEEEEeC---------------------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 23 RPGLPMIVCCS---------------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 23 ~~~~k~iIF~n---------------------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+...+|||+| +...++.|.+.|+..|+ . +.++.+++.++-.+.+++|.+.
T Consensus 15 ~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 15 KPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHF-E-IKPHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp SSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCC-E-EEEEeCCCHHHHHHHHHHHHHh
Confidence 34477999998 44678999999999994 6 4677799999999999999763
No 149
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=70.97 E-value=31 Score=29.05 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=50.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-------CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
..++||.++++.-+..+++.+.+. ..+.+..++|+..... .++.+..+
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~---------------------- 149 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKL---------------------- 149 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHH----------------------
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcC----------------------
Confidence 468999999999999888888763 1246778888776554 34455554
Q ss_pred CceeEEEEecCCCC-CCcC--CCCCCCCCeEEE
Q 031433 98 HKSHMIVVTDACLP-LLSS--GESAISARVLIN 127 (159)
Q Consensus 98 ~~~~vLV~Td~~~~-~~~r--Gid~~~v~~VI~ 127 (159)
..+|+|+|.-.+- ++.+ ...+..+++||.
T Consensus 150 -~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 150 -RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp -CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 5789999964100 0111 235677777764
No 150
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=70.16 E-value=8.1 Score=31.56 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.+.+.+..+ . ..+++++|+||++-.++..++..|+..|+-++..+.|++.
T Consensus 188 ~~~l~~~~~~~-g-i~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 188 DEQLKAMLAKH-G-IRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHHT-T-CCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHHc-C-CCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 34555555432 1 2456899999999989999999999988546888888863
No 151
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=69.19 E-value=14 Score=29.23 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=40.6
Q ss_pred CcEEEEeCc-----------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 26 LPMIVCCSS-----------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 26 ~k~iIF~ns-----------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.-+|||+|. ...++.|.+.|+..|+ . +.++.+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY-S-VDVKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHHHh
Confidence 459999998 5788999999999994 6 457779999999999999965
No 152
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=68.78 E-value=15 Score=33.61 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=34.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHHH
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 68 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~~ 68 (159)
.+++++|.|.|+.-+...++++.. .| +++.++.|+++.++|...
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lG-Lsv~~i~gg~~~~~r~~~ 198 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLG-LQVGVILATMTPDERRVA 198 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTT-CCEEECCTTCCHHHHHHH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcC-CeEEEEeCCCCHHHHHHh
Confidence 467999999999988777766654 36 899999999998776543
No 153
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=67.20 E-value=41 Score=27.87 Aligned_cols=77 Identities=10% Similarity=0.118 Sum_probs=50.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-------CCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-------ADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-------~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
..++||.++++.-+..+++.+++. ..+.+..++|+.+... .++.+..+
T Consensus 146 ~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~---------------------- 200 (563)
T 3i5x_A 146 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKL---------------------- 200 (563)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHH----------------------
T ss_pred CeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcC----------------------
Confidence 358999999999999988888762 1246778888876554 34445454
Q ss_pred CceeEEEEecCCCC-CCcC--CCCCCCCCeEEE
Q 031433 98 HKSHMIVVTDACLP-LLSS--GESAISARVLIN 127 (159)
Q Consensus 98 ~~~~vLV~Td~~~~-~~~r--Gid~~~v~~VI~ 127 (159)
..+|+|+|.-.+- ++.+ ...+..+++||.
T Consensus 201 -~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 201 -RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp -CCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred -CCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 6789999964100 0111 234567777764
No 154
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=66.92 E-value=5.7 Score=31.01 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+++... ...+++++|+||++-.++...+..|...|+-++..+.|++.
T Consensus 240 ~~l~~~~~~~--~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 240 EEIRHLFQEK--KVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHT--TCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHH
T ss_pred HHHHHHHHhc--CCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 4455555432 13456899999999888888888999988546778888754
No 155
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=65.95 E-value=4.9 Score=33.69 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=34.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++++||++-......+..|+..|+ ++..+.|++.
T Consensus 521 ~~~~~~iv~~c~~g~rs~~a~~~l~~~G~-~v~~l~gG~~ 559 (565)
T 3ntd_A 521 LPKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYR 559 (565)
T ss_dssp SCTTSEEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred cCCcCeEEEEeCCchHHHHHHHHHHHcCC-CEEEEcChHH
Confidence 34568999999999999999999999996 9999999864
No 156
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=65.92 E-value=9.6 Score=28.16 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=29.2
Q ss_pred CCcEEEEeCchH-HHHHHHHHHhcCCCccEEEeecC
Q 031433 25 GLPMIVCCSSRD-ELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 25 ~~k~iIF~ns~~-~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
.++++|+|++-. .+..++..|+ .|+-++..|.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 689999999877 7888999999 885468889988
No 157
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=65.54 E-value=4.3 Score=31.71 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=43.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+...+|||+|+...++.|.+.|+..|+ . +.++.+++.++-.+.+++|.+.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGY-E-VQKFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTE-E-EEEEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHHHhc
Confidence 346799999999999999999999984 5 5567799999999999999763
No 158
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=65.18 E-value=21 Score=32.94 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhc----CCCccEEEeecCCCHHHHHHH
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSN----LADISFSSLHSDLAETERTLI 68 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~----~~~i~~~~l~~~~~~~~R~~~ 68 (159)
.++.-.|-.++. ...+++++|.|.|..-+...++.+.. .| +++..+.|+++.++|...
T Consensus 105 KTLvf~Lp~~L~-aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lG-Lsv~~i~Gg~~~~~r~~a 166 (997)
T 2ipc_A 105 KTLVATLAVALN-ALTGKGVHVVTVNDYLARRDAEWMGPVYRGLG-LSVGVIQHASTPAERRKA 166 (997)
T ss_dssp HHHHHHHHHHHH-HTTCSCCEEEESSHHHHHHHHHHHHHHHHTTT-CCEEECCTTCCHHHHHHH
T ss_pred hHHHHHHHHHHH-HHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHH
Confidence 344444443322 23467999999999888776666554 46 899999999998877664
No 159
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=65.09 E-value=9.2 Score=27.15 Aligned_cols=40 Identities=10% Similarity=-0.054 Sum_probs=25.7
Q ss_pred CCCcEEEEeCchHHHHH-HHHHHhcC--CCccEEEeecCCCHH
Q 031433 24 PGLPMIVCCSSRDELDA-VCSAVSNL--ADISFSSLHSDLAET 63 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~-l~~~L~~~--~~i~~~~l~~~~~~~ 63 (159)
.+.++||.|+++.-++. +.+.+... ..+.+..++|+....
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~ 123 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLK 123 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CC
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccc
Confidence 46799999999988776 55554442 126888888876433
No 160
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=64.97 E-value=6.2 Score=31.07 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDL 60 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~ 60 (159)
..+++++|+||++-.++...+..|.+ .|+-++..+.|++
T Consensus 256 l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~ 295 (318)
T 3hzu_A 256 INPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSW 295 (318)
T ss_dssp CCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHH
T ss_pred CCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcH
Confidence 45678999999999999999999986 7853588888875
No 161
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=64.92 E-value=3.3 Score=27.86 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=28.6
Q ss_pred CCcEEEEeCchHH---------HHHHHHHHhcCCCccEEEeecCC
Q 031433 25 GLPMIVCCSSRDE---------LDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 25 ~~k~iIF~ns~~~---------~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+++||||++-.. +..+++.|...|+ ++..|.|++
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~ 126 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGL 126 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCH
Confidence 4789999998655 3567888999986 999999986
No 162
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=64.83 E-value=24 Score=25.59 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=40.2
Q ss_pred CCcEEEEeCch-----------HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 25 GLPMIVCCSSR-----------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 25 ~~k~iIF~ns~-----------~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
...+|||.|.. ..++.|.+.|+..|+ .+ .++.+++.++-.+.+++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF-~V-~~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY-SV-DVKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHh
Confidence 35699999864 778999999999984 65 56788999999999999965
No 163
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=64.23 E-value=7.8 Score=27.01 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=25.2
Q ss_pred CCCCcEEEEeC-chHHHHHHHHHH--------hcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCS-SRDELDAVCSAV--------SNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~n-s~~~~~~l~~~L--------~~~~~i~~~~l~~~~~ 61 (159)
.+++++||||+ +-......+..| +..|+-++..|.|++.
T Consensus 83 ~~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~ 130 (152)
T 1t3k_A 83 KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFN 130 (152)
T ss_dssp CSCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTH
T ss_pred CCCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHH
Confidence 45678999998 544333334433 4467447888999974
No 164
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=63.64 E-value=8.1 Score=35.08 Aligned_cols=40 Identities=3% Similarity=-0.012 Sum_probs=29.7
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCCCHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDLAETER 65 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~~~~~R 65 (159)
+.++||.|+++.-+....+.+++. + +.+..+||+.+...+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~-~~v~~~~G~~~~~~~ 339 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQG-YSVQGISGENFSNVS 339 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTT-CCEEEECCC-----C
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccC-ceEEEEECCcchhhH
Confidence 688999999999988887777764 5 799999999866554
No 165
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=63.42 E-value=7.1 Score=33.53 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=31.2
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHH
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETE 64 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~ 64 (159)
.++||.++++.-+....+.+++.. ++.+..++|+.+...
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~ 103 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENV 103 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccc
Confidence 789999999998888887777652 379999999886543
No 166
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=62.55 E-value=29 Score=22.50 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=35.8
Q ss_pred HHHHHHHHccCCCCCcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHH
Q 031433 12 VELLHLVVAGRRPGLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~ 68 (159)
.+.++.+.. ..+++||.. ....|..+.++|.+.+ +....+.=+...+.+...
T Consensus 8 ~~~v~~~i~----~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~g-i~~~~~dI~~~~~~~~~l 65 (109)
T 3ipz_A 8 KDTLEKLVN----SEKVVLFMKGTRDFPMCGFSNTVVQILKNLN-VPFEDVNILENEMLRQGL 65 (109)
T ss_dssp HHHHHHHHT----SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHHHc----cCCEEEEEecCCCCCCChhHHHHHHHHHHcC-CCcEEEECCCCHHHHHHH
Confidence 444555554 478999998 4889999999999987 676665544444444433
No 167
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=62.13 E-value=10 Score=29.26 Aligned_cols=50 Identities=8% Similarity=0.012 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCc--hH-HHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSS--RD-ELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns--~~-~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+.+..+- ..+++++||||.+ -. .+..++..|+..|+-++..|.|++
T Consensus 78 ~~~~~~l~~lg--i~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 130 (296)
T 1rhs_A 78 AGFADYVGSLG--ISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGF 130 (296)
T ss_dssp HHHHHHHHHTT--CCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred HHHHHHHHHcC--CCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCH
Confidence 44445554331 2456889999998 33 467888899998854688999875
No 168
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=61.79 E-value=25 Score=24.65 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=39.9
Q ss_pred CCcEEEEeC--------------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCS--------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~n--------------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
...+|||.| +...++.|.+.|+..|+ . +.++.+++.++-.+.+++|.+.
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~-V~~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-E-VRNKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHHS
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCC-E-EEEeeCCCHHHHHHHHHHHHHh
Confidence 357889887 34578899999999984 6 5667799999999999999774
No 169
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=61.56 E-value=18 Score=28.07 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=42.7
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCc
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHK 99 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (159)
..+.++||.|+++.-++.+++.+++.+ .+.+..++++..... ....
T Consensus 73 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~ 121 (395)
T 3pey_A 73 DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------------------------------KQIN 121 (395)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------------------------------SCBC
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------------------------------ccCC
Confidence 345678888888888877777776531 235555554422110 0115
Q ss_pred eeEEEEecCCCC-CC-cCCCCCCCCCeEEE
Q 031433 100 SHMIVVTDACLP-LL-SSGESAISARVLIN 127 (159)
Q Consensus 100 ~~vLV~Td~~~~-~~-~rGid~~~v~~VI~ 127 (159)
.+|+|+|.-.+- ++ ...+++..+++||.
T Consensus 122 ~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 122 AQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp CSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred CCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 789999964100 01 33466778888774
No 170
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=61.41 E-value=22 Score=26.77 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeC-----chHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~n-----s~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
++.+++.+.++-+. .-..+|++||+| |.+....+.+...... +++..+-...
T Consensus 144 ~~~e~i~~~lki~~--el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vL~IE~~~ 200 (220)
T 3s5u_A 144 TIFEKVMEITQVHR--YLSKKKLLIFINACTYLTEDEVQQVVEYISLNN-VDVLFLEQRV 200 (220)
T ss_dssp CHHHHHHHHHHHHH--HCTTCCEEEEESGGGGCCHHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred CHHHHHHHHHHHHH--HhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEeccc
Confidence 35577777777433 445699999999 7788999999998887 7998888763
No 171
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=61.06 E-value=11 Score=30.47 Aligned_cols=50 Identities=6% Similarity=-0.007 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEe-Cch-HHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCC-SSR-DELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~-ns~-~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.+.+.+..+- ..+++++|||| .+- ..+..++..|+..|+ ++..|.|++.
T Consensus 81 ~~f~~~l~~~g--i~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~ 132 (373)
T 1okg_A 81 AEFIDWCMANG--MAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQ 132 (373)
T ss_dssp HHHHHHHHHTT--CSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTH
T ss_pred HHHHHHHHHcC--CCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHH
Confidence 44445554321 34568999999 443 333477888999997 9999999973
No 172
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=60.43 E-value=2.6 Score=36.34 Aligned_cols=42 Identities=10% Similarity=-0.035 Sum_probs=29.4
Q ss_pred CCcEEEEeCchHHHHHH-HHHHhcCCC--ccEEEeecCCCHHHHH
Q 031433 25 GLPMIVCCSSRDELDAV-CSAVSNLAD--ISFSSLHSDLAETERT 66 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l-~~~L~~~~~--i~~~~l~~~~~~~~R~ 66 (159)
+.++||.++++.-+... .+.|++... +.+..++|+.+..++.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~ 100 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISF 100 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHH
Confidence 47899999999888888 777776532 6999999988665443
No 173
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=59.99 E-value=24 Score=27.97 Aligned_cols=50 Identities=4% Similarity=-0.015 Sum_probs=41.8
Q ss_pred CCCcEEEEeCch------------HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSSR------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns~------------~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+...+|||+|.. ..++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~f~~~ 121 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNF-TI-FPYGNVNQDQFFKLLTMVTSS 121 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTE-EE-EEECSCCHHHHHHHHHHHHTS
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCC-EE-EEccCCCHHHHHHHHHHHHHH
Confidence 446789998863 678999999999984 64 677899999999999999864
No 174
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=59.84 E-value=27 Score=26.97 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=40.5
Q ss_pred CcEEEEeCc-------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns-------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.-+|||.|. ...++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGF-KV-TVFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCC-EE-EEecCcCHHHHHHHHHHHHHh
Confidence 468999885 6788999999999984 64 567799999999999999764
No 175
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=59.84 E-value=21 Score=27.14 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHHHHccCCCCCcEEEEeC-----chHHHHHHHHHHhcCCCccEEEeecC
Q 031433 6 TFQETLVELLHLVVAGRRPGLPMIVCCS-----SRDELDAVCSAVSNLADISFSSLHSD 59 (159)
Q Consensus 6 ~~~~~l~~ll~~l~~~~~~~~k~iIF~n-----s~~~~~~l~~~L~~~~~i~~~~l~~~ 59 (159)
++.+++.+.++-+. .-..+|++||+| |.+..+.+.+.....+ +++..+-..
T Consensus 144 ~~~eki~~~lki~~--el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~~-i~vLlIE~~ 199 (229)
T 3qhq_A 144 TIFEKCFEIIQVYH--YLTKKNLLVFVNSGAYLTKDEVIKLCEYINLMQ-KSVLFLEPR 199 (229)
T ss_dssp SHHHHHHHHHHHHH--HCTTCCEEEEESCGGGCCHHHHHHHHHHHHHHC-SCEEEEESS
T ss_pred CHHHHHHHHHHHHH--HhcCCCEEEEEChHHhCCHHHHHHHHHHHHHhC-CeEEEEecc
Confidence 35677777777433 455699999999 6788999999998886 788888765
No 176
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=59.25 E-value=12 Score=31.63 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=32.5
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.++++|||++-..+...+..|+..|+-++..|.|++
T Consensus 61 ~~~~~iVvyc~~g~~s~~a~~~L~~~G~~~V~~L~GG~ 98 (539)
T 1yt8_A 61 RRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGL 98 (539)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHTTCSSEEEETTHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCCceEEeCCCH
Confidence 35689999999988889999999999865688898875
No 177
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=58.05 E-value=37 Score=24.74 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=40.0
Q ss_pred CCcEEEEeCch--------------HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~--------------~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
...+|||+|.. ..++.|.+.|+..|+ .+ .+|.+++.++-.+.+++|.+.
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF-~V-~~~~dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF-EV-KCFNDLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EE-EEEeCCCHHHHHHHHHHHhhh
Confidence 35699999853 578999999999984 64 566799999999999999663
No 178
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=57.45 E-value=20 Score=29.04 Aligned_cols=36 Identities=3% Similarity=0.081 Sum_probs=30.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~~ 61 (159)
+.++||.|+++.-+....+.+.+.+ +. +..+||+..
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~-~~~v~~~~g~~~ 169 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRIK 169 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGC-GGGEEEBSSSCB
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC-CcceEEECCCcC
Confidence 5799999999999999999998876 68 888888753
No 179
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=57.16 E-value=28 Score=25.77 Aligned_cols=35 Identities=3% Similarity=0.087 Sum_probs=27.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDL 60 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~ 60 (159)
+.+++|+|+++.-++.+.+.+.+.+ +. +..++|+.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~-~~~v~~~~g~~ 168 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFG-EEYVGEFSGRI 168 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGC-GGGEEEESSSC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCC-CCeEEEEeCCC
Confidence 4788888888888888888887765 56 77777764
No 180
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=57.12 E-value=29 Score=26.37 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=40.1
Q ss_pred CCcEEEEeCc--------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns--------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..-+|||.|. ...++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF-~V-~~~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-EV-RNKNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCC-EE-EEEeCCCHHHHHHHHHHHHHh
Confidence 3568898883 3478999999999984 64 567799999999999999874
No 181
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=56.67 E-value=32 Score=26.68 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=40.8
Q ss_pred CCCcEEEEeCc--------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns--------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+..-+|||+|. ...++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 20 ~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 20 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF-EV-KCFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp BCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHhh
Confidence 34568999985 3678999999999984 64 567799999999999999653
No 182
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=56.64 E-value=38 Score=22.08 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHHHHccCCCCCcEEEEe------CchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHH
Q 031433 12 VELLHLVVAGRRPGLPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLI 68 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~------ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~ 68 (159)
.+.++.+.. ..+++||. ++...|..+.++|.+.+ +....+.=+.+++.|...
T Consensus 6 ~~~v~~~i~----~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~g-i~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 6 NLRLKKLTH----AAPCMLFMKGTPQEPRCGFSKQMVEILHKHN-IQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp HHHHHHHHT----SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCEEEEGGGCHHHHHHH
T ss_pred HHHHHHHHh----cCCEEEEEecCCCCCcchhHHHHHHHHHHcC-CCeEEEECcCCHHHHHHH
Confidence 344555554 57999998 47788999999999987 676666544455554443
No 183
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=55.95 E-value=14 Score=28.69 Aligned_cols=52 Identities=13% Similarity=0.025 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHHHccCCCCCcEEEEeCch---HHHHHHHHHHhcCCCccEEEeecCC
Q 031433 7 FQETLVELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 7 ~~~~l~~ll~~l~~~~~~~~k~iIF~ns~---~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
..+.+.+.+..+- ..+++++||||++. ..+..++..|+..|+-++..|.|++
T Consensus 91 ~~~~~~~~~~~lg--i~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~ 145 (302)
T 3olh_A 91 GAEHFAEYAGRLG--VGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGL 145 (302)
T ss_dssp CHHHHHHHHHHTT--CCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CHHHHHHHHHHcC--CCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCH
Confidence 3455666666542 24568999999642 2477888899999854688899885
No 184
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=55.70 E-value=22 Score=25.04 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNL 48 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~ 48 (159)
...++|+++.+. .+.+++|.|.+.+.++.|-+.|=..
T Consensus 26 ~~aCrL~~ka~~---~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 26 QLVCEIAAERWR---SGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp HHHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHH---cCCeEEEECCCHHHHHHHHHHHhCC
Confidence 455677777665 5799999999999999999888665
No 185
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=55.65 E-value=9.8 Score=32.19 Aligned_cols=39 Identities=3% Similarity=-0.014 Sum_probs=33.4
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
..+++++++||++-......+..|+..|+ ++..+.|++.
T Consensus 538 l~~~~~iv~~C~~g~rs~~a~~~l~~~G~-~v~~l~GG~~ 576 (588)
T 3ics_A 538 VPVDKDIYITCQLGMRGYVAARMLMEKGY-KVKNVDGGFK 576 (588)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHTTC-CEEEETTHHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCC-cEEEEcchHH
Confidence 34578999999999999999999999985 7888888863
No 186
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=55.38 E-value=40 Score=26.65 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=41.3
Q ss_pred CCcEEEEeCc-------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns-------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..-+|||.|. ...++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF-~V-~~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGF-KV-TVFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHHh
Confidence 4569999885 6778999999999984 64 567799999999999999764
No 187
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=55.13 E-value=12 Score=31.74 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+.+.+..+ .++++++++|.+-..+...+..|+..|+-++..+.|++
T Consensus 418 ~~l~~~l~~l----~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~ 465 (539)
T 1yt8_A 418 SQLKQALERL----GTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGT 465 (539)
T ss_dssp GGHHHHHHHH----CCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHH
T ss_pred HHHHHHHHhC----CCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcH
Confidence 3444445443 44689999999999999999999998855788888875
No 188
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=54.92 E-value=11 Score=30.70 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
.+.+++|+||.+-.++...+..|+..|+-++..+.|++
T Consensus 356 ~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~ 393 (423)
T 2wlr_A 356 KPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGW 393 (423)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHH
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccH
Confidence 45789999999999999999999999854688888875
No 189
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=54.45 E-value=37 Score=23.89 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=18.1
Q ss_pred eeEEEEecCCCCCCcCCCCCCCCCeEEEccCC
Q 031433 100 SHMIVVTDACLPLLSSGESAISARVLINYELP 131 (159)
Q Consensus 100 ~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P 131 (159)
-.|.|.|-- .+.|+.++ .||.+++.
T Consensus 100 ~~v~v~t~~----~~KGlEf~---~V~~~~~~ 124 (174)
T 3dmn_A 100 PGVIVVPSF----LAKGLEFD---AVIVWNAN 124 (174)
T ss_dssp SSEEEEEGG----GCTTCCEE---EEEEETCB
T ss_pred CCeEEEEcc----ccCCcCCC---EEEEecCC
Confidence 468888988 89998754 55666653
No 190
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=53.48 E-value=58 Score=23.17 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=41.2
Q ss_pred CCCcEEEEeCc---------------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSS---------------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns---------------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+...+|||.|. ...++.|.+.|...|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 22 ~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 22 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHF-EI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp SCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTC-EE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCC-EE-EEecCCCHHHHHHHHHHHHHh
Confidence 45789999883 5678899999999984 65 667899999999999999654
No 191
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=53.23 E-value=21 Score=29.32 Aligned_cols=39 Identities=0% Similarity=0.066 Sum_probs=31.0
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCC---CccEEEeecCCCHHH
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLA---DISFSSLHSDLAETE 64 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~---~i~~~~l~~~~~~~~ 64 (159)
.++||.|+++.-++...+.+++.+ ...+..++|+.+..+
T Consensus 158 ~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~ 199 (510)
T 2oca_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD 199 (510)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTG
T ss_pred CeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCcccc
Confidence 499999999999998888887652 247888998877655
No 192
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=51.96 E-value=38 Score=26.25 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=40.0
Q ss_pred CCcEEEEeC--------------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCS--------------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~n--------------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
...+|||+| +...++.|.+.|+..|+ . +.++.+++.++-.+.+++|.+.
T Consensus 44 rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 44 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY-E-VRNKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC-E-EEEEESCCHHHHHHHHHHHHTS
T ss_pred CCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCC-E-EEEecCCCHHHHHHHHHHHHhh
Confidence 366889876 33478999999999984 6 4678899999999999999863
No 193
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=51.86 E-value=11 Score=31.12 Aligned_cols=40 Identities=8% Similarity=0.015 Sum_probs=33.5
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
-.+.++++++|++-.++...+..|+..|+-++..+.|++.
T Consensus 424 l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 424 VPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SCSSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 3457899999999999999999999998546888888763
No 194
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=51.83 E-value=23 Score=27.16 Aligned_cols=48 Identities=6% Similarity=-0.022 Sum_probs=39.3
Q ss_pred CcEEEEeCc-------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSS-------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns-------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..+|||+|. ...++.|.+.|+..|+ . +.++.+++.++-.+.+++|.+.
T Consensus 21 g~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF-~-V~~~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 21 GMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDF-E-VTVYKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp EEEEEEEECCC-----------CCHHHHHHHHHHHTTC-E-EEEEEECSHHHHHHHHHHHHTS
T ss_pred cEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCC-E-EEEEeCCCHHHHHHHHHHHHHh
Confidence 458999884 2568899999999984 6 5677799999999999999863
No 195
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=50.33 E-value=12 Score=25.94 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=26.6
Q ss_pred CCCcE--EEEeC-chHHHHHHHHHHhc----------CCCccEEEeecCCC
Q 031433 24 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~--iIF~n-s~~~~~~l~~~L~~----------~~~i~~~~l~~~~~ 61 (159)
+++++ +++|+ +-......+..|++ .|+-++..|.|++.
T Consensus 86 ~~~~ivvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 86 DGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred CCCCeEEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 45665 45698 76777777788774 36447889999864
No 196
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=50.17 E-value=10 Score=30.72 Aligned_cols=38 Identities=13% Similarity=-0.030 Sum_probs=31.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAE 62 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~ 62 (159)
++++|+||++-.++...+..|...|+-++..+.|++..
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~ 283 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSE 283 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHH
Confidence 68999999998888888899998885458888888643
No 197
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=49.66 E-value=47 Score=21.01 Aligned_cols=57 Identities=9% Similarity=0.070 Sum_probs=37.4
Q ss_pred HHHHHHHHHccCCCCCcEEEEe------CchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHH
Q 031433 11 LVELLHLVVAGRRPGLPMIVCC------SSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 11 l~~ll~~l~~~~~~~~k~iIF~------ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F 72 (159)
..+.++.+.. ..+++||. +....|..+...|.+.+ +....+.=+..++.+....+.+
T Consensus 6 ~~~~~~~~i~----~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~-i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 6 LEERLKVLTN----KASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp HHHHHHHHHT----SSSEEEEESBCSSSBCTTHHHHHHHHHHHHT-CCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc----cCCEEEEEecCCCCCCCccHHHHHHHHHHCC-CCeEEEECCCCHHHHHHHHHHH
Confidence 3344444543 35799998 46678889999998887 6776666555665555544444
No 198
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=49.40 E-value=48 Score=25.45 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=41.0
Q ss_pred CCCcEEEEeCch--------------HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSSR--------------DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns~--------------~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+..-+|||.|.. ..++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+.
T Consensus 20 ~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~V-~~~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 20 PCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHF-MV-EVKGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp SCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTE-EE-EEEESCCHHHHHHHHHHHHHS
T ss_pred cccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCC-EE-EEEcCCCHHHHHHHHHHHHHh
Confidence 446789998862 478999999999984 64 567899999999999999764
No 199
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=49.27 E-value=61 Score=23.12 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=40.6
Q ss_pred CCCcEEEEeCc--------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 24 PGLPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 24 ~~~k~iIF~ns--------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
+...+|||.|. ...++.|.+.|+..|+ .+ .++.+++.++-.+.+++|.+
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF-~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGY-DV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTE-EE-EEEESCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCC-EE-EEeeCCCHHHHHHHHHHhhh
Confidence 45788999875 2378899999999983 54 67789999999999999977
No 200
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=48.99 E-value=22 Score=30.78 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=28.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC---CCccEEEeecCCCH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL---ADISFSSLHSDLAE 62 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~---~~i~~~~l~~~~~~ 62 (159)
+.++++.++++.-+...++.++.. | +.+..++|+...
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~~~g-~~v~~~~G~~~~ 107 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWEKIG-LRIGISTGDYES 107 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTTTTT-CCEEEECSSCBC
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHHhcC-CEEEEEeCCCCc
Confidence 578999999998888888887532 4 688888887654
No 201
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=47.60 E-value=18 Score=28.29 Aligned_cols=38 Identities=0% Similarity=-0.049 Sum_probs=23.4
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcC----CCccEEEeecCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNL----ADISFSSLHSDL 60 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~----~~i~~~~l~~~~ 60 (159)
....++||.++++.-++.+++.+++. +.+.+...+++.
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 134 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCc
Confidence 33457888888888877776666653 124555555543
No 202
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=44.00 E-value=1e+02 Score=23.33 Aligned_cols=49 Identities=6% Similarity=-0.118 Sum_probs=33.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+.++.|++++.+.+++..+.|.+.+. -.+.++ ...+++.++-+....+
T Consensus 25 rd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~---~~~~~~~~i~~~l~~~ 74 (227)
T 3gr1_A 25 RDKMLYVAAQNERDTLWARQVLARGDYDKNARVI---NENEENKRISIWLDTY 74 (227)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE---CHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE---ehHHHHHHHHHHHHhc
Confidence 346799999999999999999988752 245555 3445555544444443
No 203
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=43.65 E-value=39 Score=26.86 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHc----cCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCC
Q 031433 9 ETLVELLHLVVA----GRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDL 60 (159)
Q Consensus 9 ~~l~~ll~~l~~----~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~ 60 (159)
+.+...++.++. ...+.+++|++|.|--++-.+.-.|...|.-.+..+.|+.
T Consensus 255 e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSW 310 (327)
T 3utn_X 255 EAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSW 310 (327)
T ss_dssp HHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcH
Confidence 444555554432 2345689999999998888777778777743566666754
No 204
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=43.22 E-value=41 Score=27.84 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.0
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhcC
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSNL 48 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~~ 48 (159)
...+.++||.++++.-++.+.+.+++.
T Consensus 186 ~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 186 SVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp TCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 344568999999999999988888775
No 205
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=41.92 E-value=16 Score=29.85 Aligned_cols=22 Identities=0% Similarity=-0.076 Sum_probs=15.8
Q ss_pred CcEEEEeCchHHHHHHHHHHhc
Q 031433 26 LPMIVCCSSRDELDAVCSAVSN 47 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~ 47 (159)
.++||.++++.-+..+++.+++
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHH
T ss_pred CcEEEEeChHHHHHHHHHHHHH
Confidence 4788888888877777665554
No 206
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=41.92 E-value=19 Score=24.90 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=22.5
Q ss_pred CCcEEEE-e-CchHHHH----HHHHHHhcCCC--ccEEEeecCCC
Q 031433 25 GLPMIVC-C-SSRDELD----AVCSAVSNLAD--ISFSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF-~-ns~~~~~----~l~~~L~~~~~--i~~~~l~~~~~ 61 (159)
+++.||| | .+-.... ++...|...|+ .++..|.|++.
T Consensus 67 ~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 67 KKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWE 111 (152)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHH
T ss_pred CCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHH
Confidence 3455555 9 4433333 44477877773 37888999864
No 207
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=41.75 E-value=50 Score=25.99 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=39.4
Q ss_pred CcEEEEeCc--------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns--------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.-+|||.|. ...++.|.+.|+..| ..+ .++.+++.++-.+.+++|.+.
T Consensus 70 g~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LG-F~V-~~~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 70 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLG-FDV-IVYNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHT-EEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCC-CEE-EEecCcCHHHHHHHHHHHHHh
Confidence 468999874 367889999999998 465 567799999999999999764
No 208
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=41.58 E-value=81 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=32.7
Q ss_pred CcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHH
Q 031433 26 LPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 26 ~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
.+++||+. ....|..+.++|.+.+ +....+.=+..++.+....+
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~g-v~y~~vdI~~d~~~~~~L~~ 84 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACG-ERFAYVDILQNPDIRAELPK 84 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTC-SCCEEEEGGGCHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcC-CceEEEECCCCHHHHHHHHH
Confidence 68999987 6788999999999987 67777765555555544433
No 209
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=41.37 E-value=47 Score=30.86 Aligned_cols=37 Identities=5% Similarity=-0.001 Sum_probs=30.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.+.++||-++++.-+...++.+++... .+..++|+.+
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~-~VglltGd~~ 262 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDIT 262 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS-SEEEECSSCB
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC-CccEEeCccc
Confidence 357899999999999999998888653 7888888775
No 210
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=40.91 E-value=1.3e+02 Score=24.38 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEE-----eCchHHHHHHHHHHhcCCCccEEEee-cCCCHHHHHHHHHHHhc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVC-----CSSRDELDAVCSAVSNLADISFSSLH-SDLAETERTLILEEFRH 74 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF-----~ns~~~~~~l~~~L~~~~~i~~~~l~-~~~~~~~R~~~l~~F~~ 74 (159)
.+.+++............++++|+ -||.+.++.+++-|.+.| +.+..+. .+.+..+...++++..+
T Consensus 248 ~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~G-v~~~~~~~~d~~~~~~s~i~~~i~~ 319 (410)
T 4dik_A 248 PQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKG-FTPVVYKFSDEERPAISEILKDIPD 319 (410)
T ss_dssp HHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTT-CEEEEEEECSSCCCCHHHHHHHSTT
T ss_pred HHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcC-CceEEEEeccCCCCCHHHHHHHHHh
Confidence 444555444444323334566554 356788889999999887 5665432 24444444556666544
No 211
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=40.86 E-value=76 Score=20.94 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHccCCCCCcEEEEeCc------hHHHHHHHHHHhcCCCcc---EEEeecCCCHHHHHHH
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSS------RDELDAVCSAVSNLADIS---FSSLHSDLAETERTLI 68 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns------~~~~~~l~~~L~~~~~i~---~~~l~~~~~~~~R~~~ 68 (159)
.+.++.+.. ..+++||..+ .--|..+.+.|.+.+ +. ...+.=+...+.|...
T Consensus 6 ~~~v~~~i~----~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~~~~dv~~~~~~~~~l 66 (121)
T 3gx8_A 6 RKAIEDAIE----SAPVVLFMKGTPEFPKCGFSRATIGLLGNQG-VDPAKFAAYNVLEDPELREGI 66 (121)
T ss_dssp HHHHHHHHH----SCSEEEEESBCSSSBCTTHHHHHHHHHHHHT-BCGGGEEEEECTTCHHHHHHH
T ss_pred HHHHHHHhc----cCCEEEEEeccCCCCCCccHHHHHHHHHHcC-CCcceEEEEEecCCHHHHHHH
Confidence 344554554 4789999884 788899999999887 56 5455444455544433
No 212
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=40.86 E-value=43 Score=30.71 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCC-CccEEEeecCCC
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLA-DISFSSLHSDLA 61 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~-~i~~~~l~~~~~ 61 (159)
.+.++||.++++.-+...++.|++.. ++.+..++|+.+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 45789999999999999999999862 368999999864
No 213
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=40.84 E-value=1.1e+02 Score=22.67 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHhcCCC-ccEEEeecCCCHHHHHHHHHHHhc
Q 031433 24 PGLPMIVCCSSRDELDAVCSAVSNLAD-ISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 24 ~~~k~iIF~ns~~~~~~l~~~L~~~~~-i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.+.++.|++++.+.+++..+.|.+.++ -.+.++- ..+++.++-+....
T Consensus 25 rD~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~---~~~e~~~i~~~L~~ 73 (197)
T 3gr0_A 25 RDKMLYVAAQNERDTLWARQVLARGDYDKNARVIN---ENEENKRISIWLDT 73 (197)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC---HHHHHHHHHHHHHH
T ss_pred CCCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee---hHHHHHHHHHHHHh
Confidence 346699999999999999999987642 1444444 34444444444444
No 214
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.57 E-value=84 Score=21.34 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHH---hcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAV---SNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L---~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
+.+.+-+..+.. .-+.--++|.+.|-+ -+++.+.+ ++.| +.+++++...+.+.|..+.++|++.
T Consensus 62 edfrenireiwe-rypqldvvvivttdd-kewikdfieeakerg-vevfvvynnkdddrrkeaqqefrsd 128 (162)
T 2l82_A 62 EDFRENIREIWE-RYPQLDVVVIVTTDD-KEWIKDFIEEAKERG-VEVFVVYNNKDDDRRKEAQQEFRSD 128 (162)
T ss_dssp HHHHHHHHHHHH-HCTTCCEEEEEECCC-HHHHHHHHHHHHHTT-CEEEEEEECSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHH-hCCCCcEEEEEecCc-HHHHHHHHHHHHhcC-cEEEEEecCCCchhHHHHHHHhhhc
Confidence 444455554554 445455555544422 34444444 4556 7999999999999999999999986
No 215
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=40.37 E-value=78 Score=20.88 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhc
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRH 74 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~ 74 (159)
.+.+..-++.+.. +....+++|..|.+.-..++-+.+++.| .+++.+-.+.+..+ +++|++
T Consensus 35 sdelkkemkklae-eknfekiliisndkqllkemlelisklg-ykvflllqdqdene----leefkr 95 (134)
T 2lci_A 35 SDELKKEMKKLAE-EKNFEKILIISNDKQLLKEMLELISKLG-YKVFLLLQDQDENE----LEEFKR 95 (134)
T ss_dssp HHHHHHHHHHHHH-CCSCCCEEEEESCHHHHHHHHHHHHHHT-CCEEEEEECSCHHH----HHHHHH
T ss_pred hHHHHHHHHHHHh-hcCcceEEEEcCcHHHHHHHHHHHHHhC-ceeEEEeecCchhH----HHHHHH
Confidence 3455555666666 6667899999999999999999999998 49999888877766 566655
No 216
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}
Probab=40.33 E-value=21 Score=26.68 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=23.7
Q ss_pred EEEEeC-chHHHHHHHHHHhcC----------CCccEEEeecCC
Q 031433 28 MIVCCS-SRDELDAVCSAVSNL----------ADISFSSLHSDL 60 (159)
Q Consensus 28 ~iIF~n-s~~~~~~l~~~L~~~----------~~i~~~~l~~~~ 60 (159)
+|++|. +-......+..|+.. |+-.+..|.|++
T Consensus 127 VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~ 170 (216)
T 3op3_A 127 IVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGY 170 (216)
T ss_dssp EEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred EEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcH
Confidence 899999 777677777777654 544789999985
No 217
>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4
Probab=40.16 E-value=98 Score=22.69 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHH
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER 65 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R 65 (159)
.+...++...+ ....+++-||+|.. .+.+.+.+...+ +..+-|||+.+++.-
T Consensus 39 ~~~a~~i~~~~---~~~~~~VgVfvn~~--~~~i~~~~~~~~-ld~vQLHG~e~~~~~ 90 (203)
T 1v5x_A 39 PEAARAIGEAL---GPFVVRVGVFRDQP--PEEVLRLMEEAR-LQVAQLHGEEPPEWA 90 (203)
T ss_dssp HHHHHHHHHHS---CSSSEEEEEESSCC--HHHHHHHHHHTT-CSEEEECSCCCHHHH
T ss_pred HHHHHHHHHhC---CCCCCEEEEEeCCC--HHHHHHHHHhhC-CCEEEECCCCCHHHH
Confidence 34445554432 22357899999863 556666666666 799999999887653
No 218
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=39.69 E-value=1.1e+02 Score=23.04 Aligned_cols=41 Identities=7% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERT 66 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~ 66 (159)
+-++++.-.+.+.++.+.+.|+..+ .++..+..|++.++--
T Consensus 31 Ga~Vv~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dvt~~~~v 71 (254)
T 4fn4_A 31 DSIVVAVELLEDRLNQIVQELRGMG-KEVLGVKADVSKKKDV 71 (254)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHH
Confidence 5678887788888999999999887 4899999998765543
No 219
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=39.64 E-value=71 Score=23.01 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=38.7
Q ss_pred CcEEEEeCc--------------hHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 26 LPMIVCCSS--------------RDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 26 ~k~iIF~ns--------------~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..+|||.|. ...++.|.+.|...|+ .+ .+|.+++.++-.+.+++|.+.
T Consensus 45 G~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF-~V-~v~~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 45 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF-DV-IVYNDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp EEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTE-EE-EEEESCCHHHHHHHHHHHHTS
T ss_pred eEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCC-EE-EEEeCCCHHHHHHHHHHHHHh
Confidence 468999874 3568899999999983 54 667799999999999999764
No 220
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=39.53 E-value=99 Score=21.86 Aligned_cols=18 Identities=0% Similarity=0.054 Sum_probs=10.5
Q ss_pred EEccCCCChhHHHhhhhc
Q 031433 126 INYELPTKKETYIRRMTT 143 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR 143 (159)
.++.+|.....++.|+.+
T Consensus 80 y~~~~p~~lK~~ld~l~~ 97 (197)
T 2vzf_A 80 YKASYTGLLKAFLDILPQ 97 (197)
T ss_dssp BTTBCCHHHHHHHTTSCT
T ss_pred cCCCCCHHHHHHHHhccc
Confidence 345566666666666543
No 221
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=39.29 E-value=40 Score=22.93 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=33.4
Q ss_pred EeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHH
Q 031433 31 CCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 31 F~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F 72 (159)
||.+++.|..+-.+|..++ +...-+.=+++++.|....+..
T Consensus 12 ~c~~kk~c~~aK~lL~~kg-V~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANK-IGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CCEEEEECTTCHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHHhc
Confidence 3556678899999999998 7888888778888888877776
No 222
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=39.06 E-value=24 Score=25.80 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=26.3
Q ss_pred CCCcE--EEEeC-chHHHHHHHHHHhc----------CCCccEEEeecCC
Q 031433 24 PGLPM--IVCCS-SRDELDAVCSAVSN----------LADISFSSLHSDL 60 (159)
Q Consensus 24 ~~~k~--iIF~n-s~~~~~~l~~~L~~----------~~~i~~~~l~~~~ 60 (159)
+++++ |+||+ +-......+..|+. .|+-++..|.|++
T Consensus 108 ~d~~ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 157 (211)
T 1qb0_A 108 LDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157 (211)
T ss_dssp TTSEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHH
Confidence 45676 67799 76666777777764 4644788898985
No 223
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=36.52 E-value=24 Score=30.69 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=30.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---CCCccEEEeecCCCHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAETE 64 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---~~~i~~~~l~~~~~~~~ 64 (159)
+.++++.++++.-+..+++.++. .| +.+..++|+...+.
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g-~~v~~~~G~~~~~~ 109 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIG-LRVAMATGDYDSKD 109 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGT-CCEEEECSCSSCCC
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcC-CEEEEecCCCCccc
Confidence 57899999999999988888863 24 68888999876543
No 224
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=35.51 E-value=13 Score=31.28 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=39.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.+++|.|.|....+.|.+.|++.+ +.+...... +++. ...+.|
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~-i~~~~~~~~----------~~~~-------------------------~g~v~i 425 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIK-IAPQRIMRL----------DEAS-------------------------DRGRYL 425 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGT-CCCEECSCG----------GGCC-------------------------TTCEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcC-CCceecCch----------hhcC-------------------------CCcEEE
Confidence 3577777777777777777777765 454333211 0111 234555
Q ss_pred EecCCCCCCcCCCCCCCCCeEEE
Q 031433 105 VTDACLPLLSSGESAISARVLIN 127 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~ 127 (159)
+..- +..|..+++.+++|-
T Consensus 426 ~~g~----L~~GF~~p~~klaVI 444 (483)
T 3hjh_A 426 MIGA----AEHGFVDTVRNLALI 444 (483)
T ss_dssp EESC----CCSCEEETTTTEEEE
T ss_pred EEcc----cccCcccCCCCEEEE
Confidence 5556 899999898888765
No 225
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=35.06 E-value=98 Score=23.28 Aligned_cols=78 Identities=8% Similarity=-0.015 Sum_probs=49.4
Q ss_pred CCcEEEEeCch-------HHHHHHHHHHhcCCCccEEEee-cCCC--------HHHHHHHHHHHhcccccccccccccCC
Q 031433 25 GLPMIVCCSSR-------DELDAVCSAVSNLADISFSSLH-SDLA--------ETERTLILEEFRHTAMKWNQKVTEQSG 88 (159)
Q Consensus 25 ~~k~iIF~ns~-------~~~~~l~~~L~~~~~i~~~~l~-~~~~--------~~~R~~~l~~F~~~~~~~~~~~~~~~~ 88 (159)
..|++|++-|. .-++.+.+.+.+.| +.+..++ .+++ +++-.++.+++...
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g-~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~A------------- 99 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFG-AEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWS------------- 99 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTT-CEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHC-------------
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCC-CEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHC-------------
Confidence 35777776553 34555666666555 4555554 2232 23344556666663
Q ss_pred CCCCCCCCCCceeEEEEecCCCCCCcCCCCCCCCCeEEEccCCCChhHHHhhhhcc
Q 031433 89 DESETGKDEHKSHMIVVTDACLPLLSSGESAISARVLINYELPTKKETYIRRMTTC 144 (159)
Q Consensus 89 ~~~~~~~~~~~~~vLV~Td~~~~~~~rGid~~~v~~VI~~d~P~~~~~yi~R~GR~ 144 (159)
=-++++|+. +|+.+|.....++-|+.+.
T Consensus 100 -----------D~iI~~sP~-----------------Yn~sipa~LKn~iD~l~~~ 127 (247)
T 2q62_A 100 -----------EGQVWVSPE-----------------RHGAMTGIMKAQIDWIPLS 127 (247)
T ss_dssp -----------SEEEEEEEC-----------------SSSSCCHHHHHHHHTSCSC
T ss_pred -----------CEEEEEeCC-----------------CCCCccHHHHHHHHHhhhc
Confidence 357788887 6788999999999998875
No 226
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=34.44 E-value=99 Score=20.38 Aligned_cols=43 Identities=12% Similarity=0.002 Sum_probs=30.7
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhcCCCcc-EEEeecCCCHHHHHHH
Q 031433 25 GLPMIVCCS------SRDELDAVCSAVSNLADIS-FSSLHSDLAETERTLI 68 (159)
Q Consensus 25 ~~k~iIF~n------s~~~~~~l~~~L~~~~~i~-~~~l~~~~~~~~R~~~ 68 (159)
..+++||.. ..--|..+.+.|.+.+ +. ...+.=+.+.+.+...
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g-v~~~~~vdV~~d~~~~~~l 68 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHG-VRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTT-CCCCEEEESSSCHHHHHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcC-CCCCEEEEcCCCHHHHHHH
Confidence 378999998 4888999999999987 64 5555544455554443
No 227
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=34.01 E-value=1.1e+02 Score=22.42 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHH
Q 031433 8 QETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETE 64 (159)
Q Consensus 8 ~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~ 64 (159)
.+...++...+ .....++-||+|.. .+.+.+.+...+ +...-|||+-+++.
T Consensus 40 ~~~a~~i~~~~---~~~~~~VgVfvn~~--~~~i~~~~~~~~-ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 40 PEDARRISVEL---PPFVFRVGVFVNEE--PEKILDVASYVQ-LNAVQLHGEEPIEL 90 (205)
T ss_dssp HHHHHHHHHHS---CSSSEEEEEESSCC--HHHHHHHHHHHT-CSEEEECSCCCHHH
T ss_pred HHHHHHHHHhC---CCCCCEEEEEeCCC--HHHHHHHHHhhC-CCEEEECCCCCHHH
Confidence 34444554432 22357899999863 455555555555 79999999887754
No 228
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=33.95 E-value=8.6 Score=31.91 Aligned_cols=39 Identities=8% Similarity=0.040 Sum_probs=0.0
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
.++++++++|.+-.++...+..|+..|+-++..+.|++.
T Consensus 423 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 461 (466)
T 3r2u_A 423 NKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK 461 (466)
T ss_dssp ---------------------------------------
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence 346899999999999999999999988546777888765
No 229
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=33.07 E-value=1.2e+02 Score=25.26 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecC-------C-----CHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSD-------L-----AETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~-------~-----~~~~R~~~l~~F~~~ 75 (159)
++++||.|++...++.+++.|+....-.+..+-+. . -..+|.+++.+...+
T Consensus 39 ~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~ 101 (483)
T 3hjh_A 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 (483)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhC
Confidence 47899999999999999999987521133332221 1 134688888888776
No 230
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=33.01 E-value=1.7e+02 Score=25.33 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEee--------------------cCC--C---HHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH--------------------SDL--A---ETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~--------------------~~~--~---~~~R~~~l~~F~~~ 75 (159)
++++||.+++...+..+++.|+.. +.-.+..+- .+. + ...|..++.+...+
T Consensus 53 ~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~ 129 (664)
T 1c4o_A 53 GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTR 129 (664)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999876 321233222 222 2 56788889888775
No 231
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=32.96 E-value=20 Score=20.01 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=17.8
Q ss_pred eecCCCHHHHHHHHHHHhcc
Q 031433 56 LHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 56 l~~~~~~~~R~~~l~~F~~~ 75 (159)
-||+|+-.+.++..+.|.+-
T Consensus 4 ~hG~MD~~~hE~Ty~gFi~~ 23 (43)
T 1qle_D 4 KHGEMDIRHQQATFAGFIKG 23 (43)
T ss_dssp CTTCSCCHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHH
Confidence 48999999999999999874
No 232
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A
Probab=32.65 E-value=26 Score=24.59 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=24.6
Q ss_pred CCCcEEE--EeC-chHHHHHHHHHHhc----------CCCccEEEeecCC
Q 031433 24 PGLPMIV--CCS-SRDELDAVCSAVSN----------LADISFSSLHSDL 60 (159)
Q Consensus 24 ~~~k~iI--F~n-s~~~~~~l~~~L~~----------~~~i~~~~l~~~~ 60 (159)
++++++| +|+ +-......+..|++ .|+-++..|.|++
T Consensus 88 ~~~~ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~ 137 (175)
T 2a2k_A 88 LDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 137 (175)
T ss_dssp --CEEEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHH
T ss_pred CCCCeEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCH
Confidence 4567755 488 66667777777774 3644788899985
No 233
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=32.24 E-value=35 Score=29.97 Aligned_cols=71 Identities=17% Similarity=0.037 Sum_probs=47.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCCCceeEEE
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDEHKSHMIV 104 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLV 104 (159)
+.+++|.++++.-+..+++.+.+.-+..+...+|+.. ..+ ..+|+|
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~-----------------------~~~IlV 302 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITT-----------------------GAPVTY 302 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECC-----------------------CCSEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccC-----------------------CCCEEE
Confidence 4689999999988888888776542245555666532 222 688999
Q ss_pred EecCCCCCCcCCCCCCCCCeEEEccC
Q 031433 105 VTDACLPLLSSGESAISARVLINYEL 130 (159)
Q Consensus 105 ~Td~~~~~~~rGid~~~v~~VI~~d~ 130 (159)
+|+-.+ +....++..++++||.=+.
T Consensus 303 ~TPGrL-l~~~~l~l~~l~~lVlDEA 327 (666)
T 3o8b_A 303 STYGKF-LADGGCSGGAYDIIICDEC 327 (666)
T ss_dssp EEHHHH-HHTTSCCTTSCSEEEETTT
T ss_pred ECcHHH-HhCCCcccCcccEEEEccc
Confidence 998532 1234577778999887665
No 234
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=31.71 E-value=37 Score=24.45 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=31.0
Q ss_pred CCCCCcEEEEeCchHHH--HHHHHHHhcCCCccEEEeec-CCC
Q 031433 22 RRPGLPMIVCCSSRDEL--DAVCSAVSNLADISFSSLHS-DLA 61 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~--~~l~~~L~~~~~i~~~~l~~-~~~ 61 (159)
-.+...+|||+|+-.+. -+++..++++| +.+..+++ ..+
T Consensus 75 i~~~D~vii~S~Sg~n~~~ie~A~~ake~G-~~vIaITs~~~~ 116 (170)
T 3jx9_A 75 LHAVDRVLIFTPDTERSDLLASLARYDAWH-TPYSIITLGDVT 116 (170)
T ss_dssp CCTTCEEEEEESCSCCHHHHHHHHHHHHHT-CCEEEEESSCCC
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCC-CcEEEEeCcchh
Confidence 45678999999986654 57888888998 79999998 443
No 235
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Probab=30.77 E-value=8.5 Score=26.47 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=24.5
Q ss_pred CCCCcEEEEeCchHHHHHH------HHHHh--cCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDELDAV------CSAVS--NLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l------~~~L~--~~~~i~~~~l~~~~~ 61 (159)
.+.+++||||++-...... +..|+ ..|+-++..|.|++.
T Consensus 76 ~~~~~iVvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~ 122 (153)
T 2vsw_A 76 DCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFA 122 (153)
T ss_dssp CTTSEEEEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred CCCCeEEEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHH
Confidence 4568899999875443222 34444 225447889999863
No 236
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=30.05 E-value=1.2e+02 Score=26.69 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=27.1
Q ss_pred CCCCCcEEEEeCchHHHHHHHHHHhc-CCCccEEEeecCCCHHH
Q 031433 22 RRPGLPMIVCCSSRDELDAVCSAVSN-LADISFSSLHSDLAETE 64 (159)
Q Consensus 22 ~~~~~k~iIF~ns~~~~~~l~~~L~~-~~~i~~~~l~~~~~~~~ 64 (159)
....+++||.|+. ..+....+.+.+ .+.+.+..+||......
T Consensus 283 ~~~~~~~LIV~P~-sll~qW~~E~~~~~p~~~v~~~~g~~~~r~ 325 (800)
T 3mwy_W 283 RRQNGPHIIVVPL-STMPAWLDTFEKWAPDLNCICYMGNQKSRD 325 (800)
T ss_dssp HSCCSCEEEECCT-TTHHHHHHHHHHHSTTCCEEECCCSSHHHH
T ss_pred cCCCCCEEEEECc-hHHHHHHHHHHHHCCCceEEEEeCCHHHHH
Confidence 4456889999994 455544555544 33468888898765443
No 237
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=29.42 E-value=1.1e+02 Score=19.36 Aligned_cols=45 Identities=4% Similarity=0.036 Sum_probs=32.3
Q ss_pred CCcEEEEeC------chHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHH
Q 031433 25 GLPMIVCCS------SRDELDAVCSAVSNLADISFSSLHSDLAETERTLILE 70 (159)
Q Consensus 25 ~~k~iIF~n------s~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~ 70 (159)
..+++||.. ....|..+..+|.+.+ +....+.=+...+.+....+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~-i~~~~vdi~~~~~~~~~l~~ 64 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTG-VEYETFDILEDEEVRQGLKT 64 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTC-SCEEEEESSSCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcC-CCeEEEECCCCHHHHHHHHH
Confidence 367999977 5567888999999987 78777776666555554443
No 238
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=29.08 E-value=66 Score=25.66 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=43.1
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
..++.+||. +.|-.+....++.|++.|. +.+.+.|+=++... ++++.+.
T Consensus 211 v~gk~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~a----~e~l~~~---------------------- 264 (326)
T 3s5j_B 211 VKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPA----ISRINNA---------------------- 264 (326)
T ss_dssp CTTSEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTH----HHHHHHS----------------------
T ss_pred CCCCEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEEEecccCchH----HHHHhhC----------------------
Confidence 346777776 7788999999999998863 46677788666544 3445544
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+|+||.
T Consensus 265 -~i~~vv~t~t 274 (326)
T 3s5j_B 265 -CFEAVVVTNT 274 (326)
T ss_dssp -CCSEEEEETT
T ss_pred -CCCEEEEecC
Confidence 5888999997
No 239
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=28.81 E-value=97 Score=18.54 Aligned_cols=16 Identities=6% Similarity=0.154 Sum_probs=11.9
Q ss_pred cCCCChhHHHhhhhcc
Q 031433 129 ELPTKKETYIRRMTTC 144 (159)
Q Consensus 129 d~P~~~~~yi~R~GR~ 144 (159)
.-|.+...+.+++.+.
T Consensus 100 ~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 100 SKPLDPQLLLTTLQGL 115 (119)
T ss_dssp SSCSTTHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHH
Confidence 4477888888888766
No 240
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=28.02 E-value=52 Score=24.62 Aligned_cols=35 Identities=0% Similarity=-0.015 Sum_probs=22.7
Q ss_pred CcEEEEeCchHHHHHHHHHHhcCCC---ccEEEeecCC
Q 031433 26 LPMIVCCSSRDELDAVCSAVSNLAD---ISFSSLHSDL 60 (159)
Q Consensus 26 ~k~iIF~ns~~~~~~l~~~L~~~~~---i~~~~l~~~~ 60 (159)
.++||.|+++.-++...+.+.+.+. ..+..++++.
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~ 195 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGA 195 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTC
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCC
Confidence 4788888888777777777765421 2455666554
No 241
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*
Probab=27.76 E-value=16 Score=26.01 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=21.7
Q ss_pred CcEEEEeCch-HH----HHHHHHHHhcCC--CccEEEeecCCC
Q 031433 26 LPMIVCCSSR-DE----LDAVCSAVSNLA--DISFSSLHSDLA 61 (159)
Q Consensus 26 ~k~iIF~ns~-~~----~~~l~~~L~~~~--~i~~~~l~~~~~ 61 (159)
+++||+|.+- .. +..+.+.|...| +.++..|.|++.
T Consensus 105 ~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~ 147 (169)
T 3f4a_A 105 LNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFS 147 (169)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHH
T ss_pred CeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHH
Confidence 6899999862 22 233434343333 247889999864
No 242
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=26.94 E-value=1.6e+02 Score=23.31 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=43.6
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHHHHHHHHHHhcccccccccccccCCCCCCCCCCC
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETERTLILEEFRHTAMKWNQKVTEQSGDESETGKDE 97 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~R~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (159)
..++.+||. +.|-.+....++.|++.| .+.+.+.|+=++... ++.+.+.
T Consensus 214 v~gk~viiVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~s~~a----~~~l~~~---------------------- 267 (319)
T 3dah_A 214 VEGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGA----ADRIAAS---------------------- 267 (319)
T ss_dssp -CCSEEEEEEEEESSCHHHHHHHHHHHHTTCSCEEEEEEEECCCTTH----HHHHHTS----------------------
T ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEEEeecCChHH----HHHHHhC----------------------
Confidence 456788886 778899999999999875 367788888666544 3455554
Q ss_pred CceeEEEEecC
Q 031433 98 HKSHMIVVTDA 108 (159)
Q Consensus 98 ~~~~vLV~Td~ 108 (159)
.+.-+|+||.
T Consensus 268 -~i~~vv~t~t 277 (319)
T 3dah_A 268 -ALDELVVTDT 277 (319)
T ss_dssp -SCSEEEEESS
T ss_pred -CCCEEEEecc
Confidence 5888999997
No 243
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=26.24 E-value=2.3e+02 Score=22.02 Aligned_cols=19 Identities=11% Similarity=-0.085 Sum_probs=14.0
Q ss_pred EEccCCCChhHHHhhhhcc
Q 031433 126 INYELPTKKETYIRRMTTC 144 (159)
Q Consensus 126 I~~d~P~~~~~yi~R~GR~ 144 (159)
.+.++|.....++.++.+.
T Consensus 318 y~~~~~~~~k~~ld~l~~~ 336 (404)
T 2ohh_A 318 IYDEPYPSVGDLLMYLRGL 336 (404)
T ss_dssp ETTEECTHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHhhhc
Confidence 3566777888888887764
No 244
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=25.90 E-value=1.1e+02 Score=18.61 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHH
Q 031433 36 DELDAVCSAVSNLADISFSSLHSDLAETERTLILEEF 72 (159)
Q Consensus 36 ~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F 72 (159)
+.+..+.++|...+ +....+.=+.+.+.|....+..
T Consensus 19 ~~~~~ak~~L~~~~-i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 19 SQQSEVTRILDGKR-IQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp HHHHHHHHHHHHTT-CCCEEEETTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCC-CceEEEECCCCHHHHHHHHHHh
Confidence 34478888888887 6776666555666655544443
No 245
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.54 E-value=59 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=27.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc---CCCccEEEeecCCCHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN---LADISFSSLHSDLAET 63 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~---~~~i~~~~l~~~~~~~ 63 (159)
+.++++.++++.-+...++.++. .| +.+..++|+....
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~~~g-~~v~~~~G~~~~~ 115 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWELIG-FKVAMTSGDYDTD 115 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGGGGT-CCEEECCSCSSSC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhcCC-CEEEEEeCCCCCc
Confidence 46888888888888888777743 24 6788888876543
No 246
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=25.04 E-value=2.5e+02 Score=22.02 Aligned_cols=18 Identities=6% Similarity=-0.003 Sum_probs=12.8
Q ss_pred EccCCCChhHHHhhhhcc
Q 031433 127 NYELPTKKETYIRRMTTC 144 (159)
Q Consensus 127 ~~d~P~~~~~yi~R~GR~ 144 (159)
++.+|.....++.++.+.
T Consensus 319 ~~~~~~~~k~fld~l~~~ 336 (414)
T 2q9u_A 319 NNTMMPSVAAALNYVRGL 336 (414)
T ss_dssp TTBCCHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHhh
Confidence 456677788888887654
No 247
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=24.79 E-value=1.5e+02 Score=23.63 Aligned_cols=50 Identities=12% Similarity=0.142 Sum_probs=36.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCcc-EEEeecCCCHHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADIS-FSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~-~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
..=++||++-....+.+.+.+.+.+ ++ +..+..+++.++..++.+.-++.
T Consensus 80 ~DlaVi~vp~~~a~~ai~ea~~~~G-v~~vViiT~G~~e~~~~~l~~~a~~~ 130 (334)
T 3mwd_B 80 VDVLINFASLRSAYDSTMETMNYAQ-IRTIAIIAEGIPEALTRKLIKKADQK 130 (334)
T ss_dssp CCEEEECCCTTTHHHHHHHHTTSTT-CCEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCHHHHHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 3668899998887888889998776 65 55558999987655555544443
No 248
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=23.86 E-value=19 Score=16.55 Aligned_cols=7 Identities=43% Similarity=1.118 Sum_probs=5.7
Q ss_pred EEEeCch
Q 031433 29 IVCCSSR 35 (159)
Q Consensus 29 iIF~ns~ 35 (159)
|||||.+
T Consensus 8 iiycnrr 14 (21)
T 8tfv_A 8 IIYCNRR 14 (26)
T ss_dssp CEEEEGG
T ss_pred EEEEcCc
Confidence 7899875
No 249
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=23.16 E-value=94 Score=18.73 Aligned_cols=23 Identities=9% Similarity=0.275 Sum_probs=20.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHhc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSN 47 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~ 47 (159)
+..++|.|.+.+.++.+.+.|++
T Consensus 47 DDTIlvi~r~~~~a~~l~~~i~~ 69 (71)
T 1b4b_A 47 DDTCLIICRTPKDAKKVSNQLLS 69 (71)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHH
Confidence 47889999999999999999875
No 250
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=23.13 E-value=94 Score=25.28 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=38.7
Q ss_pred cCcHHHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHHHhcc
Q 031433 5 FTFQETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETERTLILEEFRHT 75 (159)
Q Consensus 5 ~~~~~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~F~~~ 75 (159)
.+..+...+-++.+.+ ...-+++.|=++.....++|.+.|...+ +.+..+..+ ..+++.+--+
T Consensus 261 lPSle~I~rqIk~~vk-~~~lksVFIATDa~~~~~ELk~~L~~~~-v~vv~~~pe------~a~ID~~I~~ 323 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVG-SIGAKSVFVASDKDHMIDEINEALKPYE-IEAHRQEPD------DMYTSLAIMG 323 (362)
T ss_dssp SCCHHHHHHHHHHHHH-HHTCSEEEEEESSCCCHHHHHHHHGGGT-CCEECCSSC------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-hcCCcEEEEecCCHHHHHHHHHHhhccC-ceEEEeCCc------hhHHHHHHHH
Confidence 4455454444444444 2234777777787778888888887654 566554433 4566766666
No 251
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1
Probab=22.95 E-value=33 Score=23.24 Aligned_cols=38 Identities=5% Similarity=-0.024 Sum_probs=24.2
Q ss_pred CCCCcEEEEeCchHHH----------HHHHHHHhcCCCccEEEeecCCC
Q 031433 23 RPGLPMIVCCSSRDEL----------DAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~----------~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
...+++||||++-... ..+.+.|...|+ .+..|.|++.
T Consensus 90 ~~~~~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~-~v~~L~GG~~ 137 (154)
T 1hzm_A 90 CGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFS 137 (154)
T ss_dssp TTSSCEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHH
T ss_pred CCCCeEEEEeCCCCccccccccchHHHHHHHHHHHCCC-ceEEEcChHH
Confidence 3468899999874321 233444444574 6888999863
No 252
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=22.91 E-value=2.2e+02 Score=21.38 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=33.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCCHHHH-HHHHHHH
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLAETER-TLILEEF 72 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~~~~R-~~~l~~F 72 (159)
+-++++.-.+.+..+++.+.|.+.+ .++..+..|++.++- .+.+++.
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g-~~~~~~~~Dv~~~~~v~~~~~~~ 80 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKG-YDAHGVAFDVTDELAIEAAFSKL 80 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTT-CCEEECCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCHHHHHHHHHHH
Confidence 4577776677778888888898887 488889988865543 3344443
No 253
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=22.27 E-value=2.1e+02 Score=22.09 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCCC--ccEEEeecCCCHHHHHHH
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLAD--ISFSSLHSDLAETERTLI 68 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~~--i~~~~l~~~~~~~~R~~~ 68 (159)
.+++++||. +.|-.+....++.|++.|. +.+.+.|+-.+...++++
T Consensus 201 v~gk~vliVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~th~v~s~~a~~~l 251 (286)
T 3lrt_A 201 VNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGLFVNGSENKI 251 (286)
T ss_dssp CTTCEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTHHHHH
T ss_pred CCcCEEEEEeccccccHHHHHHHHHHHhCCCCEEEEEEEEeecCchHHHHH
Confidence 356778886 7888999999999998863 567788987776654433
No 254
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=21.96 E-value=1.9e+02 Score=24.69 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEEe
Q 031433 9 ETLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSSL 56 (159)
Q Consensus 9 ~~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l 56 (159)
..+.+++..+.. .++++||.+.|...++.+.+.|...+ ..+.-+
T Consensus 220 ~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~~~-~~ilRl 263 (646)
T 4b3f_X 220 TTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLALCK-QRILRL 263 (646)
T ss_dssp HHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHHTT-CCEEEC
T ss_pred HHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHhcC-CceEEe
Confidence 456677766665 35899999999999999999998876 455544
No 255
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=21.58 E-value=1.3e+02 Score=24.39 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHHHHHHccCCCCCcEEEEeCchHHHHHHHHHHhcCCCccEEE
Q 031433 10 TLVELLHLVVAGRRPGLPMIVCCSSRDELDAVCSAVSNLADISFSS 55 (159)
Q Consensus 10 ~l~~ll~~l~~~~~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~ 55 (159)
.+.+.+..+. .++++++|+|+... +..++..|+..|+-.+..
T Consensus 314 ~~~~~~~~l~---~~~~~vvvy~~~~~-~~~~~~~L~~~G~~~v~~ 355 (474)
T 3tp9_A 314 SFVTWAGWLL---PADRPIHLLAADAI-APDVIRALRSIGIDDVVD 355 (474)
T ss_dssp THHHHHHHHC---CSSSCEEEECCTTT-HHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHhcC---CCCCeEEEEECCCc-HHHHHHHHHHcCCcceEE
Confidence 4455555443 35689999998765 666999999998534444
No 256
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=21.55 E-value=1.8e+02 Score=25.08 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=35.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcC-CCccEEEee--------------------cCC--C---HHHHHHHHHHHhcc
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNL-ADISFSSLH--------------------SDL--A---ETERTLILEEFRHT 75 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~-~~i~~~~l~--------------------~~~--~---~~~R~~~l~~F~~~ 75 (159)
.+++||.+++...+..++..|+.. +.-.+..+- ... + ...|.+++.+...+
T Consensus 57 ~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~~~Rl~~l~~L~~~ 133 (661)
T 2d7d_A 57 NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFER 133 (661)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999876 221233222 111 1 56888999988765
No 257
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=21.41 E-value=3.3e+02 Score=22.15 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=29.1
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHhcCCCccEEE-eecCCCHHH
Q 031433 23 RPGLPMIVCCSSRDELDAVCSAVSNLADISFSS-LHSDLAETE 64 (159)
Q Consensus 23 ~~~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~-l~~~~~~~~ 64 (159)
..++++.||... ..+..+++.|.+.| +.+.. ..+..+++.
T Consensus 310 l~gkrv~i~~~~-~~~~~l~~~L~elG-~~vv~v~~~~~~~~~ 350 (458)
T 1mio_B 310 LQGKKVALLGDP-DEIIALSKFIIELG-AIPKYVVTGTPGMKF 350 (458)
T ss_dssp HTTCEEEEEECH-HHHHHHHHHHHTTT-CEEEEEEESSCCHHH
T ss_pred cCCCEEEEEcCc-hHHHHHHHHHHHCC-CEEEEEEeCCCCHHH
Confidence 357999999986 78889999999888 55444 444445444
No 258
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=21.36 E-value=2e+02 Score=19.56 Aligned_cols=60 Identities=17% Similarity=0.073 Sum_probs=35.3
Q ss_pred HHHHHHHHccCCCCCcEEEEeCch---HHHHHHHHHHhcCCCccE----EEeecCCCHHHHHHHHHHHh
Q 031433 12 VELLHLVVAGRRPGLPMIVCCSSR---DELDAVCSAVSNLADISF----SSLHSDLAETERTLILEEFR 73 (159)
Q Consensus 12 ~~ll~~l~~~~~~~~k~iIF~ns~---~~~~~l~~~L~~~~~i~~----~~l~~~~~~~~R~~~l~~F~ 73 (159)
..+++.+......++++.+|++.- .....+.+.|.+.|. .+ ..+.+..+.+ -.+.+++|-
T Consensus 69 ~~fl~~l~~~~l~gk~v~~fgs~g~~g~a~~~l~~~l~~~G~-~~v~~~~~~~~~P~~~-dl~~~~~~g 135 (161)
T 3hly_A 69 ATALSTIFAAAHNKQAIGLFDSYGGDDEPIDALLAQFRNLGL-HTAFPPIRVKDQPTEA-IYQQCEESG 135 (161)
T ss_dssp HHHHHHHHHHCCTTSEEEEECCCCSSBCCHHHHHHHHHHTTC-EESSSCBCCCSSCCHH-HHHHHHHHH
T ss_pred HHHHHHHHhhhhCCCEEEEEEcCCCCcHHHHHHHHHHHHCCC-EEecCceEEeeCCCHH-HHHHHHHHH
Confidence 445555544345679999998643 457888889988763 33 2334444443 344444453
No 259
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.13 E-value=1.6e+02 Score=18.48 Aligned_cols=45 Identities=7% Similarity=-0.004 Sum_probs=24.6
Q ss_pred ceeEEEEe-cCCCCCCcCCCCCCC-CCeEEEccCCCChhHHHhhhhcccCCCCe
Q 031433 99 KSHMIVVT-DACLPLLSSGESAIS-ARVLINYELPTKKETYIRRMTTCLAAGTS 150 (159)
Q Consensus 99 ~~~vLV~T-d~~~~~~~rGid~~~-v~~VI~~d~P~~~~~yi~R~GR~~~~~g~ 150 (159)
...+++.| +. ..... ... +..++ .-|.+...+.+++.++.+..|.
T Consensus 88 ~~~ii~ls~~~----~~~~~-~~~~~~~~l--~KP~~~~~L~~~i~~~~~~~~~ 134 (138)
T 2b4a_A 88 QPSVLILTTGR----HELIE-SSEHNLSYL--QKPFAISELRAAIDYHKPSMGV 134 (138)
T ss_dssp CCEEEEEESCC------CCC-CSSSCEEEE--ESSCCHHHHHHHHHHTCCC---
T ss_pred CCCEEEEECCC----CCHHH-HHHHHHhee--eCCCCHHHHHHHHHHHHHhcCC
Confidence 56777777 54 33222 222 22222 3488899999999988544443
No 260
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=20.99 E-value=70 Score=29.36 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=27.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 25 GLPMIVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 25 ~~k~iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
+.++||.++++.-++..++.|.+... .+..++|+.+
T Consensus 129 g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltGd~~ 164 (1010)
T 2xgj_A 129 KQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTGDIT 164 (1010)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECSSCE
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeCCCc
Confidence 57888889998888888888877643 6777787754
No 261
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=20.93 E-value=3e+02 Score=21.36 Aligned_cols=14 Identities=0% Similarity=-0.050 Sum_probs=7.5
Q ss_pred CCCChhHHHhhhhc
Q 031433 130 LPTKKETYIRRMTT 143 (159)
Q Consensus 130 ~P~~~~~yi~R~GR 143 (159)
+|.....++.++..
T Consensus 318 ~~~~~~~~l~~l~~ 331 (402)
T 1e5d_A 318 ILPYVAGTLQYIKG 331 (402)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhh
Confidence 34446666666543
No 262
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=20.65 E-value=1.9e+02 Score=20.67 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=21.7
Q ss_pred EEEeCchHHHHHHHHHHhcCCCccEEEeecCCC
Q 031433 29 IVCCSSRDELDAVCSAVSNLADISFSSLHSDLA 61 (159)
Q Consensus 29 iIF~ns~~~~~~l~~~L~~~~~i~~~~l~~~~~ 61 (159)
-|.++.......++++|.+.|+-++..+.+...
T Consensus 99 ~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~ 131 (272)
T 3o74_A 99 SVISDDRDASRQLAASLLSSAPRSIALIGARPE 131 (272)
T ss_dssp EEEECHHHHHHHHHHHHHTTCCSEEEEEEECTT
T ss_pred EEEEchHHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence 344556666777778888777556777766543
No 263
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=1.2e+02 Score=19.37 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=28.6
Q ss_pred CcEEEEeC-chH------HHHHHHHHHhcCCCccEEEeecCCCHHHHHHHHHH
Q 031433 26 LPMIVCCS-SRD------ELDAVCSAVSNLADISFSSLHSDLAETERTLILEE 71 (159)
Q Consensus 26 ~k~iIF~n-s~~------~~~~l~~~L~~~~~i~~~~l~~~~~~~~R~~~l~~ 71 (159)
.+++||.. ... .++.+.++|.+.+ +....+.=+.+++.+....+.
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~g-i~y~~vdI~~~~~~~~~l~~~ 59 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANK-IEFEEVDITMSEEQRQWMYKN 59 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTT-CCEEEEETTTCHHHHHHHHHS
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcC-CCEEEEECCCCHHHHHHHHHH
Confidence 46777742 223 3447888999887 677777766666665554443
No 264
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=20.61 E-value=2.4e+02 Score=21.52 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=32.4
Q ss_pred CCCCcEEEE---eCchHHHHHHHHHHhcCC--CccEEEeecCCCHHH
Q 031433 23 RPGLPMIVC---CSSRDELDAVCSAVSNLA--DISFSSLHSDLAETE 64 (159)
Q Consensus 23 ~~~~k~iIF---~ns~~~~~~l~~~L~~~~--~i~~~~l~~~~~~~~ 64 (159)
..++++||. +.|-.+....++.|++.| .+.+.++|+=.+...
T Consensus 203 v~Gk~VlIVDDii~TG~Tl~~aa~~Lk~~Ga~~V~~~~~h~v~s~~a 249 (284)
T 1u9y_A 203 AKDRDVFIVDDIISTGGTMATAVKLLKEQGAKKIIAACVHPVLIGDA 249 (284)
T ss_dssp CTTCCEEEEEEECSSSHHHHHHHHHHHHTTCCSEEEEEEECCCCTTH
T ss_pred CCCCEEEEEecccCchHHHHHHHHHHHHCCCcEEEEEEEeEecCcHH
Confidence 346788886 778899999999999875 256788888776554
Done!