AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>031435
MEGRKQTGSSSSLTNELFGSKESSSSSGIFGSIFSPPSKVLGRESLHSESMEKKHDSSKE
AWNTKPTTPGDASRSYETESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYSPRPPN
SQGPGVNSVFKKDGEDDSGSASRGNWWQGIVLYNHSIDV

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with SIS SIS SIS AT5G02020	protein from Arabidopsis thaliana	3.5e-27
BLAST match view associations BLAST with AT5G59080 AT5G59080 AT5G59080	protein from Arabidopsis thaliana	3.9e-19
BLAST match view associations BLAST with AT3G55646 AT3G55646 AT3G55646	protein from Arabidopsis thaliana	2.7e-13
BLAST match view associations BLAST with AT3G46880 AT3G46880 AT3G46880	protein from Arabidopsis thaliana	7.7e-08
BLAST match view associations BLAST with AT5G05965 AT5G05965 AT5G05965	protein from Arabidopsis thaliana	1.8e-07
BLAST match view associations BLAST with AT2G39855 AT2G39855 AT2G39855	protein from Arabidopsis thaliana	0.00016

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031435
        (159 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2185168 - symbol:SIS "AT5G02020" species:3702 ...   305  3.5e-27   1
TAIR|locus:2153286 - symbol:AT5G59080 "AT5G59080" species...   184  3.9e-19   2
TAIR|locus:1009023254 - symbol:AT3G55646 "AT3G55646" spec...   174  2.7e-13   1
TAIR|locus:2102727 - symbol:AT3G46880 "AT3G46880" species...    95  7.7e-08   2
TAIR|locus:504954988 - symbol:AT5G05965 "AT5G05965" speci...   119  1.8e-07   1
TAIR|locus:504955928 - symbol:AT2G39855 "AT2G39855" speci...    98  0.00016   1


>TAIR|locus:2185168 [details] [associations]
            symbol:SIS "AT5G02020" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
            evidence=IMP] [GO:0006914 "autophagy" evidence=RCA] EMBL:CP002688
            GO:GO:0009651 EMBL:AL162508 HOGENOM:HOG000238466 EMBL:AY058150
            EMBL:AY094053 IPI:IPI00528966 PIR:T48223 RefSeq:NP_195822.1
            UniGene:At.23336 UniGene:At.70618 PRIDE:Q9LZM9
            EnsemblPlants:AT5G02020.1 GeneID:831782 KEGG:ath:AT5G02020
            TAIR:At5g02020 eggNOG:NOG285266 InParanoid:Q9LZM9 OMA:KESSYPS
            PhylomeDB:Q9LZM9 ProtClustDB:CLSN2687303 Genevestigator:Q9LZM9
            Uniprot:Q9LZM9
        Length = 149

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 81/165 (49%), Positives = 96/165 (58%)

Query:     1 MEGRKQTGSSSS------LTNELFGSKEXXXXXXXXXXXXXXX---XKVLGRESLHSESM 51
             MEGRK+  SSSS      LT+ELFGS+E                   KVLGRES+  E++
Sbjct:     1 MEGRKKKASSSSPCSSSSLTSELFGSRENPSSPSSSGILGSIFPPPSKVLGRESVRQETV 60

Query:    52 EKKHDSSKEAWNTKPT-TPGDASRSYET-ESQGTAYKDMSSMYQDQRVQPCHLSSSIYYG 109
                   +   WN K + T G+  R+ E  E+ G+ Y+      QDQRVQPCHLSSSIYYG
Sbjct:    61 ------TGGCWNEKTSKTGGNVDRNREQQENHGSGYQ------QDQRVQPCHLSSSIYYG 108

Query:   110 GQDVYSPRPPNSQGPGVNSVFKKDG-EDDSGSASRGNWWQGIVLY 153
             G DVY  +P NS     NS  KKDG EDDSGSASRGNWWQG + Y
Sbjct:   109 GPDVYF-QPQNSTS---NSTNKKDGGEDDSGSASRGNWWQGSLYY 149


>TAIR|locus:2153286 [details] [associations]
            symbol:AT5G59080 "AT5G59080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0006979 "response to oxidative stress"
            evidence=IMP] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006979
            EMBL:AB024027 HOGENOM:HOG000238466 EMBL:AY063936 EMBL:AY096481
            EMBL:AK227178 IPI:IPI00534848 RefSeq:NP_200716.1 UniGene:At.27412
            PRIDE:Q9FGU5 EnsemblPlants:AT5G59080.1 GeneID:836025
            KEGG:ath:AT5G59080 TAIR:At5g59080 eggNOG:NOG269666
            InParanoid:Q9FGU5 OMA:RVEPCHL PhylomeDB:Q9FGU5
            ProtClustDB:CLSN2914854 ArrayExpress:Q9FGU5 Genevestigator:Q9FGU5
            Uniprot:Q9FGU5
        Length = 135

 Score = 184 (69.8 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 42/104 (40%), Positives = 56/104 (53%)

Query:    57 SSKEAWNTKPTTPGDAS-RSYETESQGTAYKDMSSMY-QDQRVQPCHLSSSIYYGGQDVY 114
             SS   ++T    P   S R       G+  +   S+  Q+ RV+PCHLSSS+YYGGQDVY
Sbjct:    32 SSSGIFSTMFPHPSKGSARDGSNSKHGSQAQRRESLNAQEDRVEPCHLSSSLYYGGQDVY 91

Query:   115 SPRPPNSQGPGVNSVFKKDGEDDSGS-----ASRGNWWQGIVLY 153
             +    N   P V +  ++ GEDD+        SRGNWWQG + Y
Sbjct:    92 ARSTTNQTYPPVKNDRRRSGEDDANGQNPQDVSRGNWWQGSLYY 135

 Score = 59 (25.8 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query:     1 MEGRKQTGSSSS----LTNELFGSKE 22
             MEG+ + GSSSS     T ELFGSK+
Sbjct:     1 MEGKGRVGSSSSTSSSFTAELFGSKD 26


>TAIR|locus:1009023254 [details] [associations]
            symbol:AT3G55646 "AT3G55646" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:DQ487550
            IPI:IPI00656872 RefSeq:NP_001030865.1 UniGene:At.63260
            EnsemblPlants:AT3G55646.1 GeneID:3769719 KEGG:ath:AT3G55646
            TAIR:At3g55646 OMA:YNEETEP PhylomeDB:Q1G3N4 Genevestigator:Q2V3P1
            Uniprot:Q1G3N4
        Length = 146

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 34/69 (49%), Positives = 44/69 (63%)

Query:    86 KDMSSMYQDQRVQPCHLSSSIYYGGQDVYSPRPPNSQGPGVNSVFKKDGED-DSGSASRG 144
             K+  S Y ++   PCHLSSS+YYGGQ+ YS     S     +  +KKDGE+ DS  ASRG
Sbjct:    83 KEKKSYYNEETEPPCHLSSSLYYGGQETYS-----STTTTTHDTYKKDGEEGDSKRASRG 137

Query:   145 NWWQGIVLY 153
             NWW+G + Y
Sbjct:   138 NWWEGSLYY 146


>TAIR|locus:2102727 [details] [associations]
            symbol:AT3G46880 "AT3G46880" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL096859
            HOGENOM:HOG000238466 IPI:IPI00546824 PIR:T12960 RefSeq:NP_190272.1
            UniGene:At.53806 EnsemblPlants:AT3G46880.1 GeneID:823841
            KEGG:ath:AT3G46880 TAIR:At3g46880 eggNOG:NOG267586
            InParanoid:Q9STG0 OMA:HYITRSF PhylomeDB:Q9STG0
            ProtClustDB:CLSN2915678 Genevestigator:Q9STG0 Uniprot:Q9STG0
        Length = 153

 Score = 95 (38.5 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
 Identities = 27/65 (41%), Positives = 36/65 (55%)

Query:    66 PTTPGDASR--SYETESQGTAYKDMSSMYQ--DQRVQP--CHLSSSIYYGGQDVYSPRPP 119
             P  P  ++   S    S+GTA   +SS +   +QR +   C+LSSS+YYGGQDVYS    
Sbjct:    22 PKEPSSSANFNSIFPPSKGTARNILSSKHGSLEQRKEAGTCNLSSSLYYGGQDVYSHPTH 81

Query:   120 NSQGP 124
             N   P
Sbjct:    82 NHTYP 86

 Score = 58 (25.5 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query:     1 MEGRKQTGSSSS--LTNELFGSKE 22
             MEG+ + GSSSS   T +LFG KE
Sbjct:     1 MEGKGRVGSSSSSSFTAQLFGPKE 24


>TAIR|locus:504954988 [details] [associations]
            symbol:AT5G05965 "AT5G05965" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AY735673
            IPI:IPI00516315 RefSeq:NP_680147.1 UniGene:At.43072
            UniGene:At.66777 EnsemblPlants:AT5G05965.1 GeneID:830482
            KEGG:ath:AT5G05965 TAIR:At5g05965 eggNOG:NOG286329
            HOGENOM:HOG000238466 OMA:DERSSHE ProtClustDB:CLSN2917816
            Genevestigator:Q5XV49 Uniprot:Q5XV49
        Length = 131

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 29/77 (37%), Positives = 37/77 (48%)

Query:    79 ESQGTAYKDMSSMYQDQRVQPCHLSSSIYYGGQDVYSP-RPPNSQ-GPGVNSVFKKDGED 136
             E QG   +        ++ +  + SSSIYYGGQ  YSP R   S   P        D  D
Sbjct:    55 EVQGNISQATDERSSHEKRESSYYSSSIYYGGQQHYSPPRTDGSSTSPSHQPKETNDRTD 114

Query:   137 DSGSASRGNWWQGIVLY 153
              + S SRGNWW+G + Y
Sbjct:   115 ITTSTSRGNWWKGSLYY 131


>TAIR|locus:504955928 [details] [associations]
            symbol:AT2G39855 "AT2G39855" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AY219115
            IPI:IPI00546582 RefSeq:NP_850323.2 UniGene:At.46694
            EnsemblPlants:AT2G39855.1 GeneID:818573 KEGG:ath:AT2G39855
            TAIR:At2g39855 eggNOG:NOG247957 InParanoid:Q84WZ4 PhylomeDB:Q84WZ4
            Genevestigator:Q84WZ4 Uniprot:Q84WZ4
        Length = 151

 Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
 Identities = 23/49 (46%), Positives = 30/49 (61%)

Query:    75 SYETESQ-GTAYKDMS-SMYQDQRVQP-CHLSSSIYYGGQDVYSPRPPN 120
             ++ET ++ G   K+     YQ +  QP C+LSSSIYYGGQD YS    N
Sbjct:    66 NFETPNERGERSKNKERKSYQSEETQPPCNLSSSIYYGGQDNYSSSTTN 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.305   0.123   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      159       143   0.00091  102 3  11 23  0.45    32
                                                     30  0.48    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  151 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.57u 0.11s 16.68t   Elapsed:  00:00:01
  Total cpu time:  16.57u 0.11s 16.68t   Elapsed:  00:00:01
  Start:  Sat May 11 02:10:06 2013   End:  Sat May 11 02:10:07 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data