Query 031435
Match_columns 159
No_of_seqs 51 out of 53
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:41:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xnl_A ASLV/FP, membrane prote 18.0 40 0.0014 19.7 0.8 11 27-37 4-14 (29)
2 2bn5_B U1 small nuclear ribonu 14.5 69 0.0024 18.1 1.2 13 33-45 9-22 (26)
3 1g2b_A Spectrin alpha chain; c 13.9 35 0.0012 21.0 -0.2 9 143-151 53-61 (62)
4 3ofg_A BOCA/MESD chaperone for 12.9 23 0.00079 25.9 -1.4 14 145-159 37-50 (95)
5 3fbi_A Mediator of RNA polymer 12.7 62 0.0021 22.8 0.8 12 28-39 8-19 (84)
6 1rr7_A Middle operon regulator 8.8 80 0.0027 23.1 0.2 10 107-116 63-72 (129)
7 1i1j_A Melanoma derived growth 8.0 70 0.0024 22.6 -0.4 8 145-152 59-66 (108)
8 2jmc_A Spectrin alpha chain, b 6.8 1.3E+02 0.0043 19.3 0.5 7 144-150 24-30 (77)
9 1k1z_A VAV; SH3, proto-oncogen 6.8 1E+02 0.0035 19.6 -0.0 9 143-151 51-59 (78)
10 3eg3_A Proto-oncogene tyrosine 6.6 96 0.0033 18.6 -0.2 8 144-151 39-46 (63)
No 1
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=18.05 E-value=40 Score=19.70 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=8.6
Q ss_pred CcccccccCCC
Q 031435 27 SGIFGSIFSPP 37 (159)
Q Consensus 27 sgiF~SIFppp 37 (159)
.-||.+||.|-
T Consensus 4 Ari~as~faPG 14 (29)
T 1xnl_A 4 ARIFASILAPG 14 (29)
T ss_dssp TSSTTTSSSTT
T ss_pred hhHHHHHhCcc
Confidence 35899999975
No 2
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=14.54 E-value=69 Score=18.06 Aligned_cols=13 Identities=54% Similarity=1.150 Sum_probs=7.3
Q ss_pred ccC-CCccccCccc
Q 031435 33 IFS-PPSKVLGRES 45 (159)
Q Consensus 33 IFp-pps~v~gr~s 45 (159)
||+ ||+..+||.-
T Consensus 9 mfsvppppi~gr~n 22 (26)
T 2bn5_B 9 MFSVPPPPILGRGX 22 (26)
T ss_dssp CCSCCCCSCCCCC-
T ss_pred eecCCCCCcccCCc
Confidence 555 4455777753
No 3
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=13.90 E-value=35 Score=21.02 Aligned_cols=9 Identities=33% Similarity=1.062 Sum_probs=6.9
Q ss_pred CCccccccc
Q 031435 143 RGNWWQGIV 151 (159)
Q Consensus 143 RGnWWqGSl 151 (159)
.++||+|-|
T Consensus 53 ~~~Ww~g~~ 61 (62)
T 1g2b_A 53 NKDWWKVEV 61 (62)
T ss_dssp SSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 378999865
No 4
>3ofg_A BOCA/MESD chaperone for YWTD beta-propeller-EGF P; molecular chaperone, protein folding, YWTD propeller, LDLR; HET: MSE; 1.37A {Caenorhabditis elegans}
Probab=12.90 E-value=23 Score=25.86 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=10.7
Q ss_pred ccccccccccccccC
Q 031435 145 NWWQGIVLYNHSIDV 159 (159)
Q Consensus 145 nWWqGSlYY~~~~~~ 159 (159)
.-||.+|+=+| |+|
T Consensus 37 ~lWq~sL~NnH-i~~ 50 (95)
T 3ofg_A 37 QIWQSQLYNNH-VDL 50 (95)
T ss_dssp HHHHHHHHHTT-CCE
T ss_pred HHHHHHHhhcc-eeE
Confidence 46999998777 654
No 5
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=12.68 E-value=62 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=6.8
Q ss_pred cccccccCCCcc
Q 031435 28 GIFGSIFSPPSK 39 (159)
Q Consensus 28 giF~SIFppps~ 39 (159)
-.++|+||||+.
T Consensus 8 n~isSlfPpPPP 19 (84)
T 3fbi_A 8 NEVSSLYPPPPP 19 (84)
T ss_dssp ----CCSCCCCG
T ss_pred cccccCCCCCCc
Confidence 356789998874
No 6
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=8.80 E-value=80 Score=23.14 Aligned_cols=10 Identities=50% Similarity=0.929 Sum_probs=8.9
Q ss_pred eeccccccCC
Q 031435 107 YYGGQDVYSP 116 (159)
Q Consensus 107 yYGGqD~Ys~ 116 (159)
||||+.+|-|
T Consensus 63 ~~gG~~iYIP 72 (129)
T 1rr7_A 63 HLGGGQVYIP 72 (129)
T ss_dssp HHCSSCCCCC
T ss_pred HHCCeeEEee
Confidence 7899999984
No 7
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=8.03 E-value=70 Score=22.60 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=6.5
Q ss_pred cccccccc
Q 031435 145 NWWQGIVL 152 (159)
Q Consensus 145 nWWqGSlY 152 (159)
+||+|.+-
T Consensus 59 dWW~G~~~ 66 (108)
T 1i1j_A 59 LFWGGSVQ 66 (108)
T ss_dssp TEEEEEEB
T ss_pred CEEEEEEC
Confidence 69999864
No 8
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=6.79 E-value=1.3e+02 Score=19.30 Aligned_cols=7 Identities=29% Similarity=1.189 Sum_probs=6.0
Q ss_pred Ccccccc
Q 031435 144 GNWWQGI 150 (159)
Q Consensus 144 GnWWqGS 150 (159)
++||+|.
T Consensus 24 ~~Ww~g~ 30 (77)
T 2jmc_A 24 KDWWKVE 30 (77)
T ss_dssp SSCCCEE
T ss_pred CCEEEEE
Confidence 7899986
No 9
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=6.77 E-value=1e+02 Score=19.63 Aligned_cols=9 Identities=44% Similarity=1.291 Sum_probs=7.0
Q ss_pred CCccccccc
Q 031435 143 RGNWWQGIV 151 (159)
Q Consensus 143 RGnWWqGSl 151 (159)
..+||+|-+
T Consensus 51 ~~gWw~g~~ 59 (78)
T 1k1z_A 51 EHNWWEGRN 59 (78)
T ss_dssp SCSCEEEEE
T ss_pred CCCeEEEEE
Confidence 368999974
No 10
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=6.61 E-value=96 Score=18.57 Aligned_cols=8 Identities=25% Similarity=0.875 Sum_probs=6.3
Q ss_pred Cccccccc
Q 031435 144 GNWWQGIV 151 (159)
Q Consensus 144 GnWWqGSl 151 (159)
++||+|-+
T Consensus 39 ~~W~~~~~ 46 (63)
T 3eg3_A 39 GEWCEAQT 46 (63)
T ss_dssp SSEEEEEE
T ss_pred CCeEEEEE
Confidence 67999865
Done!