BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031437
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
           Glycerol
 pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
           Glycerol
 pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
           In Complex With Indole-3-acetic Acid
 pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
           In Complex With Indole-3-acetic Acid
 pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
 pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
          Length = 422

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 51  ALPGLIRTLKMMGNYGMTFAAIG---GVYIGVEQLVQHYR 87
           +LPG+      +G+ G TF+A G   G  +G + +++H R
Sbjct: 231 SLPGMWERTLTIGSAGXTFSATGWKVGWVLGPDHIMKHLR 270


>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
 pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
           In Complex With L-Phe
          Length = 422

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 51  ALPGLIRTLKMMGNYGMTFAAIG---GVYIGVEQLVQHYR 87
           +LPG+      +G+ G TF+A G   G  +G + +++H R
Sbjct: 231 SLPGMWERTLTIGSAGXTFSATGWKVGWVLGPDHIMKHLR 270


>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
           In Pmp Form
          Length = 422

 Score = 26.2 bits (56), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 51  ALPGLIRTLKMMGNYGMTFAAIG---GVYIGVEQLVQHYR 87
           +LPG+      +G+ G TF+A G   G  +G + +++H R
Sbjct: 231 SLPGMWERTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLR 270


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.136    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,841,622
Number of Sequences: 62578
Number of extensions: 113910
Number of successful extensions: 238
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 5
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)