BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031437
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48528|OP163_ARATH Outer envelope pore protein 16-3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=OEP163 PE=1 SV=1
Length = 159
Score = 256 bits (653), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 118/159 (74%), Positives = 144/159 (90%)
Query: 1 MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
MDP+E+RYLE+ED P+MKTIKG+ G +GTI+GT++ATW+DVPRVER VALPGLIRTLK
Sbjct: 1 MDPAEMRYLEEEDGPLMKTIKGSITGFGAGTIYGTILATWKDVPRVERNVALPGLIRTLK 60
Query: 61 MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISA 120
MMG +G+TFAAIGGVYIGVEQLVQ++R KRDF NGA+GGFVAGA+VLGY+ +SI +AI+A
Sbjct: 61 MMGTHGLTFAAIGGVYIGVEQLVQNFRSKRDFYNGAIGGFVAGASVLGYRARSIPTAIAA 120
Query: 121 GAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRSTADQ 159
GA LAVTS+LID+GGQTTR+DNG+EYYPYT +KR+ AD
Sbjct: 121 GATLAVTSALIDSGGQTTRVDNGREYYPYTVEKRAEADS 159
>sp|P0CR88|TIM22_CRYNJ Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=TIM22 PE=3 SV=1
Length = 187
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 12/130 (9%)
Query: 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKM---------M 62
E P+ TI G GL G F + AT+ + R R M M
Sbjct: 50 ESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNM 108
Query: 63 GNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGA 122
+ G FA +G VY GVE ++ YR K D NG GF+ GA + G ++ + G
Sbjct: 109 WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGP--TAMLGGGV 166
Query: 123 ALAVTSSLID 132
A A S ID
Sbjct: 167 AFAAFSGAID 176
>sp|P0CR89|TIM22_CRYNB Mitochondrial import inner membrane translocase subunit TIM22
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=TIM22 PE=3 SV=1
Length = 187
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 12/130 (9%)
Query: 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKM---------M 62
E P+ TI G GL G F + AT+ + R R M M
Sbjct: 50 ESCPLKVTIAGVG-GLAIGGFFSLMSATFAYEDPLSRASNKLTTTRAQTMFVFKEMGRNM 108
Query: 63 GNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGA 122
+ G FA +G VY GVE ++ YR K D NG GF+ GA + G ++ + G
Sbjct: 109 WSSGRGFAKVGMVYSGVECCIEGYRAKNDIYNGVSAGFLTGAILARNAGP--TAMLGGGV 166
Query: 123 ALAVTSSLID 132
A A S ID
Sbjct: 167 AFAAFSGAID 176
>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum
GN=OEP16 PE=1 SV=1
Length = 146
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 57 RTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATV 106
++LK M G + AI GVY+G+E V+ R RD+ N GG V GA V
Sbjct: 65 KSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGALV 114
>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis
thaliana GN=OEP161 PE=1 SV=1
Length = 148
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 55 LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGA--TVLGYKGK 112
L LK + G+ + A GGVYIG E ++ R RD+ N + G GA + +G KGK
Sbjct: 63 LEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKKGK 122
Query: 113 S--ISSAISAGAALAVTSSLID 132
+ AI G ALA S ++
Sbjct: 123 DTIVIDAI-LGGALATASQFVN 143
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4
OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3
Length = 142
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 55 LIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
+ T K MG N TFA +G V+ E +V+ R K D VN A+ G V G ++
Sbjct: 56 FVFTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARG 115
Query: 111 GKSISSAISAGAALAVTSSLID 132
G + AG A+ S LI+
Sbjct: 116 GPKAACIGCAG--FAIFSVLIE 135
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1
OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1
Length = 173
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 55 LIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
+ T K MG N TFA +G V+ E +V+ R K D VN A+ G V G ++
Sbjct: 87 FVFTAKQMGQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARG 146
Query: 111 GKSISSAISAGAALAVTSSLID 132
G + AG A S LI+
Sbjct: 147 GPKAACIGCAG--FATFSVLIE 166
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 53/141 (37%), Gaps = 25/141 (17%)
Query: 14 TPMMKTIKGATFGLVSGTIFGTVVATWQ-DVP-RVERRVALPGLIRTLKMMGNYGM---- 67
P I G T G G +FG +A+ D P PGL +K + + +
Sbjct: 42 CPGKAAISGVT-GFALGGVFGLFMASMAYDTPLHTPAPTNAPGLPNKVKELADLPLKQQI 100
Query: 68 ----------------TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKG 111
F IG +Y GVE +V+ R K D NG G + G L YK
Sbjct: 101 KIQFSDMGKRSYSSAKNFGYIGMIYSGVECVVESLRAKNDIYNGVAAGCLTGGG-LAYK- 158
Query: 112 KSISSAISAGAALAVTSSLID 132
+A+ A A S+ ID
Sbjct: 159 SGPQAALVGCAGFAAFSTAID 179
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVT 127
F IG +Y GVE ++ R K D NG G + G L YK S+A+ A A
Sbjct: 122 NFGYIGMIYSGVECTIESLRAKNDLYNGVAAGCLTGGG-LAYK-SGPSAALIGCAGFAAF 179
Query: 128 SSLIDAGGQTTRIDNGK 144
S+ ID R +NG+
Sbjct: 180 STAIDL---YMRSENGR 193
>sp|Q12328|TIM22_YEAST Mitochondrial import inner membrane translocase subunit TIM22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TIM22 PE=1 SV=1
Length = 207
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYK 110
F IG +Y GVE +++ R K D NG GF GA L YK
Sbjct: 128 NFGYIGMIYAGVECVIESLRAKNDIYNGVTAGFFTGAG-LAYK 169
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVT 127
FA +G ++ G+E ++ R K D NG G + GA +L G ++A+ A A
Sbjct: 122 NFAKVGALFSGIECGIEGLRAKNDLGNGVAAGCLTGA-ILAKNGGPQAAAVGC-AGFAAF 179
Query: 128 SSLIDA 133
S+ IDA
Sbjct: 180 SAAIDA 185
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVT 127
F IG +Y GVE V+ R K D NG G + G L YK +A+ A A
Sbjct: 114 NFGYIGMIYAGVECAVESLRAKNDIYNGITAGCITGGG-LAYK-SGPQAALVGCAGFAAF 171
Query: 128 SSLID 132
S+ ID
Sbjct: 172 SAAID 176
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVT 127
F IGGV+ G E ++ R K D NG G + G + G +A+ A A
Sbjct: 106 NFGFIGGVFSGTECCIESLRAKNDIWNGVAAGCLTGGGLAVKAGP--QAALVGCAGFAAF 163
Query: 128 SSLID 132
S+ ID
Sbjct: 164 SAAID 168
>sp|Q9NAQ9|TIM22_CAEEL Mitochondrial import inner membrane translocase subunit tim-22
OS=Caenorhabditis elegans GN=tim-22 PE=3 SV=1
Length = 213
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 62 MGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAG 121
M +YG F +IG ++ G E ++ R K D+ NG G + G + G I A+
Sbjct: 140 MKSYGKNFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAG--IMPAVWGA 197
Query: 122 AALAVTSSLID 132
A AV S++ID
Sbjct: 198 AGFAVFSTIID 208
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17 OS=Caenorhabditis elegans GN=tim-17 PE=3 SV=1
Length = 181
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 25 FGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNY-GMTFAAIGGVYIGVEQLV 83
GLV G+IF +++ + ++ V G++R ++M G+ FAA GG++ ++ +
Sbjct: 23 MGLVGGSIF-QAFGGYKNAAKGKKLV---GMMREVRMRSTLTGVQFAAWGGMFSTIDCCL 78
Query: 84 QHYRMKRDFVNGAVGGFVAGATVLGYKGKSI--SSAISAGAALAV 126
R K D +N V G + GA + G + SAI LA+
Sbjct: 79 VAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAM 123
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVT 127
F IG VY GVE ++ R K D NG G + G + G +A+ A A
Sbjct: 103 NFGYIGMVYSGVECAIESLRAKHDIYNGVSAGCITGGGLAIRAGP--QAALVGCAGFAAF 160
Query: 128 SSLID 132
S+ ID
Sbjct: 161 STAID 165
>sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis
thaliana GN=OEP164 PE=2 SV=1
Length = 136
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 44 PRVERRVALPGLIR---TLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVN 94
PR R++ L G+ + K +G +G + GV+ +Q YR K D+VN
Sbjct: 35 PRDARKIGLSGVSQASFVAKSIGRFGFQCGLVSGVFTMTHCGLQRYRGKNDWVN 88
>sp|P87130|TIM17_SCHPO Mitochondrial import inner membrane translocase subunit tim17
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tim17 PE=3 SV=1
Length = 164
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 2 DPSELRYLEDEDTPM-MKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLK 60
DP L D M TI GA + + G W++ P E+R++ +T
Sbjct: 9 DPCPYVILNDFGAAFSMGTIGGAIWHSIKG---------WRNSPPGEKRISAIAAAKTRA 59
Query: 61 --MMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGA--TVLGYKGKSISS 116
+ GN+G+ GG++ + V+ R K D N + GF G V G + +
Sbjct: 60 PVLGGNFGVW----GGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNG 115
Query: 117 AISAGAALAVTSSL 130
AI LAV L
Sbjct: 116 AIGCACILAVFEGL 129
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3 OS=Drosophila melanogaster GN=Tim17a1 PE=2 SV=1
Length = 222
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 14/112 (12%)
Query: 3 PSELRYLEDEDTP-MMKTIKGATFGLVSGTIFGTVVATWQDVPR-VERRVALPGLIRTLK 60
P +R +ED MM TI G+ F + G +++ P ++RR L G I +K
Sbjct: 7 PCPIRIVEDCGCAFMMGTIGGSLFEFLKG---------FRNAPTGLQRR--LYGGIDLVK 55
Query: 61 M-MGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKG 111
M + +FA G + V+ + HYR + D N + G G + G
Sbjct: 56 MRTPSIAGSFAVWGATFSTVDCALVHYRQREDAWNSILSGAATGGILAARNG 107
>sp|Q0I7M9|RSMG_SYNS3 Ribosomal RNA small subunit methyltransferase G OS=Synechococcus
sp. (strain CC9311) GN=rsmG PE=3 SV=1
Length = 254
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 60 KMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRDFVN-GAVGGFVAGATVLGYKGKSISSAI 118
+++ N A + +E+ ++ + R ++ G GGF A + G S++
Sbjct: 48 RLVENEEFWIAQVFDSLWPLEKELRTPDLTRRCIDVGTGGGFPGLAVAIALPGTSLTLVD 107
Query: 119 SAGAALAVTSSLIDAGGQTTRIDNGKEYYPYTTKKRST 156
S G A S+ +A G TR+D E T +KRS
Sbjct: 108 SVGRKTAAVESMANALGLGTRVDVRTERVEVTGQKRSC 145
>sp|Q2UAP8|TIM22_ASPOR Mitochondrial import inner membrane translocase subunit tim22
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=tim22 PE=3 SV=1
Length = 184
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 68 TFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAG 103
F +G +Y G E V+ R K D N + G + G
Sbjct: 113 NFGIVGALYSGTECCVEGLRAKNDLSNSVISGCITG 148
>sp|Q7SZQ0|MBOA7_DANRE Lysophospholipid acyltransferase 7 OS=Danio rerio GN=mboat7 PE=2
SV=1
Length = 467
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 26 GLVSGTIFGTVVATWQDVPRVERRVALPG---LIRTLKMMGNYGMTFAAIGGV----YIG 78
G+++G F T+ D + ++LPG ++ LKM+ YG+ F A+ V Y+
Sbjct: 160 GIMTGPFFR--YQTYADWLQQSSPLSLPGKEPCLQRLKMVPVYGLLFIAVNSVFPLSYVR 217
Query: 79 VEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTT 138
E ++H R F A+ FV + + ISAG +L GG T
Sbjct: 218 TEDFLEHNYFYRFFYMVAI-FFVFRMRFYSAWCGAEAGCISAGLGCYPQGALSKPGGGPT 276
>sp|Q8HXG6|NDUAB_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
OS=Bos taurus GN=NDUFA11 PE=1 SV=3
Length = 141
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 52 LPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMK-RDFVNGAVGGFVAGATVLGYK 110
L G+ RT G Y T AAIG ++ + R K D +N +GG AG +LG +
Sbjct: 50 LEGVART----GRYTFTAAAIGAIFGLTSCISAQVREKPDDPLNYLIGG-CAGGLILGAR 104
Query: 111 GKSISSAISAGAALAVTSSLIDAG 134
+S +A A + +T++L+ G
Sbjct: 105 TRSYGIGAAACAYMGLTAALVKMG 128
>sp|Q9X0H9|Y1094_THEMA Uncharacterized RNA methyltransferase TM_1094 OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=TM_1094 PE=3 SV=1
Length = 439
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 56 IRTLKMM-GNYGMTFAAIG------GVYIGVEQLVQHYRMKRDFVNGAV 97
+R KM+ G YG+ + G G Y G E L++ YR KRDF G V
Sbjct: 5 VRIQKMVNGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKV 53
>sp|P41923|PYRE_YARLI Orotate phosphoribosyltransferase OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=URA5 PE=3 SV=1
Length = 219
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 98 GGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQT 137
GG + GA++ G K I I+AG A+ S+IDA G T
Sbjct: 111 GGNIVGASLKGKKVLIIDDVITAGTAIKEAFSIIDANGAT 150
>sp|P25710|NUJM_NEUCR NADH-ubiquinone oxidoreductase 21.3 kDa subunit OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=B13D24.010 PE=4 SV=1
Length = 200
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 67 MTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGA-ALA 125
++F GG+Y +Q + R K D N A+G F+ G +V+G + + GA A +
Sbjct: 59 ISFTLAGGIYRFAQQASANLREKEDGWNHAIGAFL-GGSVMGLRSLRFPVILGFGAMAGS 117
Query: 126 VTSSLIDAGGQT 137
V + +GG T
Sbjct: 118 VVGAFAFSGGLT 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,555,417
Number of Sequences: 539616
Number of extensions: 2130737
Number of successful extensions: 6877
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6848
Number of HSP's gapped (non-prelim): 43
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)