Query 031437
Match_columns 159
No_of_seqs 109 out of 699
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 14:05:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 100.0 2E-32 4.3E-37 206.6 5.2 133 1-135 28-164 (168)
2 TIGR00980 3a0801so1tim17 mitoc 99.9 1E-25 2.2E-30 174.1 13.3 125 11-139 5-132 (170)
3 PF02466 Tim17: Tim17/Tim22/Ti 99.9 1.1E-23 2.4E-28 155.0 13.3 122 14-137 1-127 (128)
4 PTZ00236 mitochondrial import 99.9 1.7E-23 3.6E-28 160.7 12.5 123 11-137 7-132 (164)
5 TIGR00983 3a0801s02tim23 mitoc 99.8 1.9E-20 4.2E-25 142.2 11.8 118 8-130 27-148 (149)
6 KOG1652 Mitochondrial import i 99.8 2.9E-22 6.3E-27 154.3 1.0 128 9-140 3-133 (183)
7 KOG3324 Mitochondrial import i 99.5 2E-13 4.3E-18 106.9 7.7 115 12-131 74-192 (206)
8 COG5596 TIM22 Mitochondrial im 99.3 2.5E-13 5.3E-18 105.5 -2.0 126 8-135 39-187 (191)
9 COG5596 TIM22 Mitochondrial im 96.8 0.00015 3.1E-09 56.9 -2.0 106 4-112 19-128 (191)
10 KOG4608 Uncharacterized conser 96.3 0.0012 2.6E-08 53.8 0.6 45 67-112 136-180 (270)
11 PF10247 Romo1: Reactive mitoc 94.9 0.06 1.3E-06 35.7 4.5 64 13-78 1-64 (67)
12 KOG4096 Uncharacterized conser 93.2 0.17 3.8E-06 33.9 4.1 70 11-82 3-72 (75)
13 TIGR00983 3a0801s02tim23 mitoc 90.5 5.5 0.00012 30.3 10.1 26 14-39 29-54 (149)
14 KOG1398 Uncharacterized conser 90.0 0.44 9.5E-06 41.7 4.1 42 64-105 301-342 (460)
15 PF02466 Tim17: Tim17/Tim22/Ti 88.1 7.8 0.00017 27.8 9.7 114 12-129 3-123 (128)
16 PF11998 DUF3493: Protein of u 74.2 7.1 0.00015 26.4 4.1 69 1-76 1-70 (75)
17 KOG1398 Uncharacterized conser 69.7 11 0.00024 33.2 5.3 94 11-105 27-121 (460)
18 PTZ00236 mitochondrial import 63.2 69 0.0015 24.8 8.8 69 64-134 65-136 (164)
19 KOG0682 Ammonia permease [Inor 54.3 43 0.00093 30.4 6.3 64 77-142 272-339 (500)
20 PF13436 Gly-zipper_OmpA: Glyc 51.0 19 0.00041 26.1 3.0 43 90-133 50-93 (118)
21 PF05818 TraT: Enterobacterial 48.9 26 0.00055 28.4 3.7 36 96-132 90-126 (215)
22 TIGR00980 3a0801so1tim17 mitoc 43.4 1.6E+02 0.0034 23.0 9.7 135 4-144 2-140 (170)
23 PF04418 DUF543: Domain of unk 41.2 13 0.00028 25.1 0.8 28 9-36 19-46 (75)
24 PF12732 YtxH: YtxH-like prote 40.0 49 0.0011 21.6 3.5 14 22-35 4-17 (74)
25 PF10439 Bacteriocin_IIc: Bact 39.6 75 0.0016 20.4 4.2 40 90-131 23-62 (65)
26 PF03672 UPF0154: Uncharacteri 38.5 86 0.0019 20.5 4.3 16 25-40 5-20 (64)
27 PF07019 Rab5ip: Rab5-interact 38.2 64 0.0014 21.4 3.9 16 94-111 10-25 (81)
28 PF14689 SPOB_a: Sensor_kinase 36.7 39 0.00084 21.5 2.5 19 78-96 8-27 (62)
29 PF08560 DUF1757: Protein of u 29.7 2.5E+02 0.0055 21.4 10.3 33 3-37 13-45 (155)
30 PF01024 Colicin: Colicin pore 27.1 1.1E+02 0.0025 24.1 4.1 31 63-93 96-128 (187)
31 PLN02720 complex II 24.8 1.4E+02 0.0029 22.5 3.9 19 87-105 89-107 (140)
32 PRK10666 ammonium transporter; 24.3 4.5E+02 0.0097 23.4 7.8 59 82-142 269-332 (428)
33 PRK04032 hypothetical protein; 23.8 2.8E+02 0.0062 21.3 5.7 65 16-91 35-99 (159)
34 PRK13731 conjugal transfer sur 23.5 1.3E+02 0.0028 24.9 3.9 46 86-132 106-156 (243)
35 PF13807 GNVR: G-rich domain o 23.4 2.1E+02 0.0045 18.8 4.4 21 18-38 57-77 (82)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-32 Score=206.61 Aligned_cols=133 Identities=35% Similarity=0.540 Sum_probs=120.6
Q ss_pred CChhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhh---cCcchhhccchhHH-HHHHhhhhhhhhHHHHHHHHH
Q 031437 1 MDPSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQ---DVPRVERRVALPGL-IRTLKMMGNYGMTFAAIGGVY 76 (159)
Q Consensus 1 ~~~~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~---~~p~~~~~~~~~~~-~~~~~~~g~~~~~fa~~g~~y 76 (159)
+||+|+++++.+++|..|++.+.+.|+++|.++|+|.++|. ++|+..++..++++ +++.+.+++++++|+++|++|
T Consensus 28 ~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvf 107 (168)
T KOG3225|consen 28 GDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVF 107 (168)
T ss_pred CChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhe
Confidence 58899999999999999999999999999999999999985 56654444445554 677777889999999999999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcC
Q 031437 77 IGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGG 135 (159)
Q Consensus 77 s~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g 135 (159)
+++||.+|++|.|+||.|.+++||++|+. ++.|.| |++++.+|++|++||++||+.-
T Consensus 108 sg~Ec~iE~~RAK~D~~NgaiaG~vtGg~-l~~raG-p~a~~~G~agfa~fS~~id~y~ 164 (168)
T KOG3225|consen 108 SGVECLIESFRAKSDWYNGAIAGCVTGGS-LGYRAG-PKAAAIGCAGFAAFSAAIDKYM 164 (168)
T ss_pred hhHHHHHHHHHhhhchhcceeeeeeeccc-hhhccc-chhhhhchhHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 899998 9999999999999999998863
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.94 E-value=1e-25 Score=174.06 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=104.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031437 11 DEDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYR 87 (159)
Q Consensus 11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~~R 87 (159)
..|||+.|+++++..++.+|++.|.+.+.+ +|.|..++. ...++.....-++.+++||++|++|+++||.++++|
T Consensus 5 ~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl--~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R 82 (170)
T TIGR00980 5 TREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKL--VGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIR 82 (170)
T ss_pred ccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchh--hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999888888877764 677653221 123332323336889999999999999999999999
Q ss_pred hhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCccc
Q 031437 88 MKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTR 139 (159)
Q Consensus 88 gk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~~~ 139 (159)
+|||+||++++||+||++ |+++.| +++++.+|+.+|++.++||++|.-+.
T Consensus 83 ~KeD~~NsiiAG~~TGa~-l~~r~G-~~a~~~~aa~gg~~la~ie~~g~~~~ 132 (170)
T TIGR00980 83 KKEDPWNSIISGFLTGAA-LAVRGG-PRAMRGSAILGACILAVIEGVGLVLT 132 (170)
T ss_pred cccchHHHHHHHHHHHHH-HHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 999998 89999999999999999999998554
No 3
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.91 E-value=1.1e-23 Score=155.03 Aligned_cols=122 Identities=27% Similarity=0.414 Sum_probs=103.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccc-hhHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHh
Q 031437 14 TPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVA-LPGLIRTLKMMGN----YGMTFAAIGGVYIGVEQLVQHYRM 88 (159)
Q Consensus 14 ~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~-~~~~~~~~~~~g~----~~~~fa~~g~~ys~~~c~~~~~Rg 88 (159)
||+.|++.+++.++.+|+++|.+...++..+...++.. .+.++..++.+++ ++..||.++++|++++|.++++|+
T Consensus 1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 79999999999999999999999998632222112112 2355566666666 999999999999999999999999
Q ss_pred hcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 031437 89 KRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQT 137 (159)
Q Consensus 89 k~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~ 137 (159)
|||+||++++|+++|++ ++++.+ ++.++.+++.+++++.++++.++.
T Consensus 81 k~D~~N~~~aG~~aGa~-~~~~~g-~~~~~~~~~~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAV-LGLRSG-PRGMASGAALGAAFAAAVEYYGRM 127 (128)
T ss_pred ccccchhHHHHHHHHHH-HHhccC-hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999996 999995 999999999999999999998763
No 4
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.91 E-value=1.7e-23 Score=160.73 Aligned_cols=123 Identities=22% Similarity=0.243 Sum_probs=98.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHh---hhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 031437 11 DEDTPMMKTIKGATFGLVSGTIFGTVVAT---WQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYR 87 (159)
Q Consensus 11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~---~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~~R 87 (159)
..|||+.|++++...++.+|++.|.+... ++|+|...+ . ...+....+..+..+++||++|++|+++||.++++|
T Consensus 7 ~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~g~r-l-~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~~R 84 (164)
T PTZ00236 7 SREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPKGER-F-SGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQYLR 84 (164)
T ss_pred CcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCCcch-H-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999888887766665554 478886322 1 122332222346889999999999999999999999
Q ss_pred hhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCc
Q 031437 88 MKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQT 137 (159)
Q Consensus 88 gk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~ 137 (159)
+|||+||++++||+||++ |+++.| ++.++.+++..+++.++|+..+.-
T Consensus 85 ~K~D~~Nsi~AG~~TGa~-l~~r~G-~~~~~~~a~~Gg~~~~~ie~~~i~ 132 (164)
T PTZ00236 85 GKEDHWNAIASGFFTGGV-LAIRGG-WRSAVRNAIFGGILLGIIELVSIG 132 (164)
T ss_pred ccCchHHHHHHHHHHHHH-HHHhcC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 999998 998888888888888888776653
No 5
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=99.84 E-value=1.9e-20 Score=142.23 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=95.2
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHH
Q 031437 8 YLEDEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMM----GNYGMTFAAIGGVYIGVEQLV 83 (159)
Q Consensus 8 ~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~----g~~~~~fa~~g~~ys~~~c~~ 83 (159)
.....|+...++..+++.|.++|.++|++.+. ++.|.... ....+++.++++ .+.+.+||+++.+|+++||.+
T Consensus 27 ~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~-~~~~~~~~--~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i 103 (149)
T TIGR00983 27 SRGWFEDLCFGTGTCYLTGLAIGALNGLRLGL-KETQSMPW--TKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSII 103 (149)
T ss_pred CCChhhhhhhhHhHHHHHHHHHHHHHHHHHHH-hhCCCCCc--HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999999998 55553211 011333333333 367899999999999999999
Q ss_pred HHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHH
Q 031437 84 QHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSL 130 (159)
Q Consensus 84 ~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~ 130 (159)
+++|+|||+||++++||+||++ +.++.| +++++.+|+.-++++++
T Consensus 104 ~~~R~k~D~~Nsv~AGa~TGal-~~~~~G-~r~~~~g~~~G~~l~~~ 148 (149)
T TIGR00983 104 EATRGKHDDFNSVAAGALTGAL-YKSTRG-LRGMARSGALGATAAGV 148 (149)
T ss_pred HHHhccchhhHhHHHHHHHHHH-HHhccC-hHHHHHHhHHHHHHhhc
Confidence 9999999999999999999997 999998 99999988888777654
No 6
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.9e-22 Score=154.34 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=105.0
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 031437 9 LEDEDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQH 85 (159)
Q Consensus 9 ~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~ 85 (159)
+.-.++|+.+.+++....+.+|.+-|.+...+ +|+|...+.. ..+.......+..+++||++|++||.++|.+..
T Consensus 3 e~sr~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~r~~--gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~ 80 (183)
T KOG1652|consen 3 EYSREPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGARLV--GGISAVKMRAPQSGGSFAVWGGLFSTVDCALVA 80 (183)
T ss_pred cccCCCCCceeeccccchhhhcccccceeeeeeeeecCCcccccc--cchhhhhccCcccccceeeeechhhHHHHHHHH
Confidence 34568888888888888888888877766654 7888744322 122222223478899999999999999999999
Q ss_pred HHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCcccc
Q 031437 86 YRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRI 140 (159)
Q Consensus 86 ~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~~~~ 140 (159)
+|+|+|+||++++||+||++ |+.|.+ +++++.+|+.++++.+++|-+|.....
T Consensus 81 ~R~KeDpwNsivsGa~TGg~-La~r~g-~~a~~~sa~~~g~~lamieg~g~~~t~ 133 (183)
T KOG1652|consen 81 IRKKEDPWNSIVSGAATGGL-LAARGG-PKAMLTSAITGGLLLAMIEGLGIQVTK 133 (183)
T ss_pred HhcccchHHHHHHHhhccce-eecccc-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999997 899997 999999999999999999999885553
No 7
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2e-13 Score=106.87 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhh----hhhhHHHHHHHHHHHHHHHHHHHH
Q 031437 12 EDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMG----NYGMTFAAIGGVYIGVEQLVQHYR 87 (159)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g----~~~~~fa~~g~~ys~~~c~~~~~R 87 (159)
.|+...-+...++.|.++|++.|+..+. .+.+... ...+.+.+.+++.. ..+...++++.+|+++|..++..|
T Consensus 74 ~E~l~f~tG~~yl~G~~iGa~~G~~~Gl-k~~e~~~--~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R 150 (206)
T KOG3324|consen 74 FENLTFGTGWAYLTGSAIGAFNGLILGL-KNTENGA--SGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATR 150 (206)
T ss_pred hhhhheeccchhccchhhhhHHHHHHhh-hcCCCCC--ccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhh
Confidence 4677778888999999999999998776 4443311 12345666666554 456778899999999999999999
Q ss_pred hhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHH
Q 031437 88 MKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLI 131 (159)
Q Consensus 88 gk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~ 131 (159)
+|||++|++.+|+.||++ +.+..| ++++..+++.-+...+++
T Consensus 151 ~~dd~lnsv~AGalTGal-yrs~~G-lr~~av~ga~g~~aa~aw 192 (206)
T KOG3324|consen 151 GKDDDLNSVAAGALTGAL-YRSTRG-LRAAAVAGAVGGTAAAAW 192 (206)
T ss_pred ccccchhhhhhhhhhhhh-hhcCCC-chHHHHHHHHHHHHHHHH
Confidence 999999999999999986 888887 777777666665555554
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.5e-13 Score=105.54 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=99.7
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh-hcCcc---hhhcc--------------c-hhHHHHHHhhhh----h
Q 031437 8 YLEDEDTPMMKTIKGATFGLVSGTIFGTVVATW-QDVPR---VERRV--------------A-LPGLIRTLKMMG----N 64 (159)
Q Consensus 8 ~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~-~~~p~---~~~~~--------------~-~~~~~~~~~~~g----~ 64 (159)
+..+...|+.+.+.+.+.|..+|...+.+.+++ |..+. ...+. + ..+++...+.++ .
T Consensus 39 ~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~f 118 (191)
T COG5596 39 MKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFF 118 (191)
T ss_pred ccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchHHHHHhhccccccccccc
Confidence 445667899999999999999999999988885 22211 01010 0 012333333343 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcC
Q 031437 65 YGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGG 135 (159)
Q Consensus 65 ~~~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g 135 (159)
++++|++.|..|.+.+|.++.+|+|||+.|++.+|+.+|+. +..+.+ ++++..+.++|+++++.++..-
T Consensus 119 tG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~-~~~~~g-~qa~~~~~a~~aa~s~~~~~~~ 187 (191)
T COG5596 119 TGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAA-LASSAG-PQAMPMGGAGFAAFSAGITLAM 187 (191)
T ss_pred cccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHH-HHhhcc-ccccccCccchhhhhhhHHhhh
Confidence 79999999999999999999999999999999999999997 888887 9999999999999999987653
No 9
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00015 Score=56.90 Aligned_cols=106 Identities=15% Similarity=0.190 Sum_probs=76.0
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHhhhhhhhhHHH-HHHHHHHHH
Q 031437 4 SELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLKMMGNYGMTFA-AIGGVYIGV 79 (159)
Q Consensus 4 ~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa-~~g~~ys~~ 79 (159)
.++..-+..++|....+..+..++-++.+...+...+ ...+...... .++..........+.+|+ ++|++++..
T Consensus 19 ~~~lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~--ssl~y~t~~~~~~g~nfg~vwGgl~~~i 96 (191)
T COG5596 19 YNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFS--SSLAYGTGLVHLLGLNFGGVWGGLFSTI 96 (191)
T ss_pred ccccChhhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccch--hhcccccccccccCccccccccceeecc
Confidence 3444555778999999999999888888888877764 2222211100 112211122345678888 799999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHhhhhhhhcccCC
Q 031437 80 EQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGK 112 (159)
Q Consensus 80 ~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g 112 (159)
.|..+++|.+.|.||....|+.+|.. +|....
T Consensus 97 ~~~~~r~q~~~~~~n~~~rg~ftG~n-~GvlGl 128 (191)
T COG5596 97 DCTPFRLQLKEQLNNAGKRGFFTGKN-LGVLGL 128 (191)
T ss_pred ccchHHHHHhhccccccccccccccc-cceeee
Confidence 99999999999999999999999986 766543
No 10
>KOG4608 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0012 Score=53.80 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCC
Q 031437 67 MTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGK 112 (159)
Q Consensus 67 ~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g 112 (159)
.-.|++.+.|-++...+..+|+|||.||.+.+|.++|++ +.+.-|
T Consensus 136 ~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsv-F~~~~g 180 (270)
T KOG4608|consen 136 WRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSV-FRINVG 180 (270)
T ss_pred eEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeee-EEeehh
Confidence 334577777888888888899999999999999999986 766544
No 11
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=94.94 E-value=0.06 Score=35.73 Aligned_cols=64 Identities=20% Similarity=0.107 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 031437 13 DTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIG 78 (159)
Q Consensus 13 ~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~ 78 (159)
.+|+.|.-..++.|..+|...|++.+.+ +..+.+. .+...++..-+.+-.++..|+.+=++=+.
T Consensus 1 psc~~kikmG~~MG~~VG~~~G~l~G~~-~~~r~g~-~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~ 64 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGAFGALFGTF-SAFRYGA-RGRGLMRTLGKYMLGSGATFGFFMSIGSV 64 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhhhhhhhhhH-HHhccCC-CCcchHhHHhHHHhcchhHHHHHHhhhcc
Confidence 4799999999999999988888888773 2222111 01112333333445566677665444333
No 12
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=0.17 Score=33.90 Aligned_cols=70 Identities=17% Similarity=0.049 Sum_probs=43.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 031437 11 DEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQL 82 (159)
Q Consensus 11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~ 82 (159)
...+|+.|.-...++|..+|...|++.+. +.....+ +.+...++...|.|-.++..|+++=++=++.+|.
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lfGg-f~~lR~g-~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALFGG-FAALRYG-PRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhccc-hhheeec-CChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 45799999999888888877766666655 2221111 0122234444455667788888877776766664
No 13
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=90.47 E-value=5.5 Score=30.30 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHh
Q 031437 14 TPMMKTIKGATFGLVSGTIFGTVVAT 39 (159)
Q Consensus 14 ~c~~k~~~~~~~G~~~G~~~G~~~~~ 39 (159)
.+..+.......++++|.+.|.+.+.
T Consensus 29 ~~~e~~~~~~G~ay~~G~~~Gg~~Gl 54 (149)
T TIGR00983 29 GWFEDLCFGTGTCYLTGLAIGALNGL 54 (149)
T ss_pred ChhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 45666666788888888888887776
No 14
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.01 E-value=0.44 Score=41.73 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhh
Q 031437 64 NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGAT 105 (159)
Q Consensus 64 ~~~~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~ 105 (159)
+.+.-.+.+-++|..+.|.+.++|-+||..|++++|.+|+..
T Consensus 301 qlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~S 342 (460)
T KOG1398|consen 301 QLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASLS 342 (460)
T ss_pred hhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhhe
Confidence 455667788899999999999999999999999999999976
No 15
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=88.07 E-value=7.8 Score=27.77 Aligned_cols=114 Identities=23% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhh---hcCcchhhccchhHHHHHHh----hhhhhhhHHHHHHHHHHHHHHHHH
Q 031437 12 EDTPMMKTIKGATFGLVSGTIFGTVVATW---QDVPRVERRVALPGLIRTLK----MMGNYGMTFAAIGGVYIGVEQLVQ 84 (159)
Q Consensus 12 ~~~c~~k~~~~~~~G~~~G~~~G~~~~~~---~~~p~~~~~~~~~~~~~~~~----~~g~~~~~fa~~g~~ys~~~c~~~ 84 (159)
.+.+...++.+++.|+++|.+.+...... .+.|...+ ....++...+ .....+..-++..++=..++..-+
T Consensus 3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 3 PERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPR--LRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHH--HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35688899999999999999999986532 33343221 1222333322 333444444556666666666654
Q ss_pred HHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHH
Q 031437 85 HYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSS 129 (159)
Q Consensus 85 ~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~ 129 (159)
+--..|-..-.+++|++-+.- -+.+. -...++.+++..+++-.
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~-~g~~~-~~~~~~~~a~~~~~~~~ 123 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLR-SGPRG-MASGAALGAAFAAAVEY 123 (128)
T ss_pred ccccchhHHHHHHHHHHHHhc-cChHH-HHHHHHHHHHHHHHHHH
Confidence 433467777888888887765 55555 35566665555555543
No 16
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=74.18 E-value=7.1 Score=26.41 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=41.7
Q ss_pred CChhhhcccCCCCChHHHHHHHHHHHHH-HHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHH
Q 031437 1 MDPSELRYLEDEDTPMMKTIKGATFGLV-SGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVY 76 (159)
Q Consensus 1 ~~~~~~~~~~~~~~c~~k~~~~~~~G~~-~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~y 76 (159)
|||+++.....+---+.|.+.-+..++. .++..|++....+-. .-|.+...++..+-.....++++.+|
T Consensus 1 ~~~~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~-------a~~~l~~~l~nlaI~igava~~~~L~ 70 (75)
T PF11998_consen 1 MDPEQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI-------AGPDLNEALPNLAIQIGAVALFAFLF 70 (75)
T ss_pred CCHHHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCccHHHHhhhHhHHHHHHHHHHHHH
Confidence 7898888888888889999888877643 556666655542100 11234444444454445555555554
No 17
>KOG1398 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.74 E-value=11 Score=33.24 Aligned_cols=94 Identities=7% Similarity=-0.003 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 031437 11 DEDTPMMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPG-LIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMK 89 (159)
Q Consensus 11 ~~~~c~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~-~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~~Rgk 89 (159)
-..+|..-..++...+..+=.-.++...++..... ++-..+-. ..+..-.+..++..+..-.+.|-...|.+.++|||
T Consensus 27 w~~~c~ga~~~~ll~~~~~~l~~y~~~ya~~l~~~-~r~~s~~d~~~k~~~~~cqs~lflvtn~~~f~al~C~lRkwlgk 105 (460)
T KOG1398|consen 27 WVANCIGALCQSLLLSYGVRLGIYILLYAFKLARG-QRYSSLLDLDLKVREEACQSGLFLVTNTGSFHALRCCLRKWLGK 105 (460)
T ss_pred cccchhHHHHHHHHhhcceehhhHHHHHHHHHHHh-ccCchhhHHHHHHHHHHHhhceeeeechHHHHHHHHHHHHHhcc
Confidence 34567766666666665533333333333211111 11001112 22232234566777777888899999999999999
Q ss_pred cchhHHHHHHHhhhhh
Q 031437 90 RDFVNGAVGGFVAGAT 105 (159)
Q Consensus 90 ~D~~N~~~gG~~aGa~ 105 (159)
.-+||..++|++.+..
T Consensus 106 ftp~t~glv~s~las~ 121 (460)
T KOG1398|consen 106 FTPLTSGLVGSVLASS 121 (460)
T ss_pred cCcccHHHHHHHHhhh
Confidence 9999999999998865
No 18
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=63.16 E-value=69 Score=24.81 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHH---HHHHHHHHHhc
Q 031437 64 NYGMTFAAIGGVYIGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAA---LAVTSSLIDAG 134 (159)
Q Consensus 64 ~~~~~fa~~g~~ys~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~---faa~s~~~~~~ 134 (159)
+.+..-++..++.+.++..-++-=..+-.+-.++.|.+-++- -|.+.- ...++.+|++ +..++.++++.
T Consensus 65 ~FAv~G~~ys~~ec~~~~~R~K~D~~Nsi~AG~~TGa~l~~r-~G~~~~-~~~a~~Gg~~~~~ie~~~i~~~~~ 136 (164)
T PTZ00236 65 NFAIWGGLFSTFDCTLQYLRGKEDHWNAIASGFFTGGVLAIR-GGWRSA-VRNAIFGGILLGIIELVSIGMNRR 136 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHh-cChHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666678888888888877766678888888888887765 566653 7777887888 45566666654
No 19
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=54.28 E-value=43 Score=30.41 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHhhhhhhhcccCC----chHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 031437 77 IGVEQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGK----SISSAISAGAALAVTSSLIDAGGQTTRIDN 142 (159)
Q Consensus 77 s~~~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g----~~~~a~~~~~~faa~s~~~~~~g~~~~~~~ 142 (159)
..+.|.+.++|.++=-++-++-|+++|. +++..+ .|.+++..++.-+++..+..++-.++..||
T Consensus 272 glt~~~~d~~~~~kwsv~~~cnG~laGl--VaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~lkvDD 339 (500)
T KOG0682|consen 272 GLTWLIIDYLRHGKWSVIGLCNGILAGL--VAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKERLKVDD 339 (500)
T ss_pred hhhhhhhhhhhcCCcchhhhHHHHHHHH--HhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHHhcCCc
Confidence 4567888888887644566677777773 466655 477777777777788777777766677665
No 20
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=50.95 E-value=19 Score=26.11 Aligned_cols=43 Identities=28% Similarity=0.182 Sum_probs=21.6
Q ss_pred cchhHHHHHHHhhhhhhhcccCCc-hHHHHHHHHHHHHHHHHHHh
Q 031437 90 RDFVNGAVGGFVAGATVLGYKGKS-ISSAISAGAALAVTSSLIDA 133 (159)
Q Consensus 90 ~D~~N~~~gG~~aGa~vlg~~~g~-~~~a~~~~~~faa~s~~~~~ 133 (159)
++.....+.|++.|++ +|.-.++ ...++.+++.-+++.++...
T Consensus 50 ~~~~~ga~~GA~~GA~-~Ga~~G~~~~ga~~GAa~Ga~~G~~~g~ 93 (118)
T PF13436_consen 50 ENTAGGAAIGAAAGAA-IGAIIGGNGRGAAIGAAAGAAVGAAAGA 93 (118)
T ss_pred hhHHHHHHHHHHHHHH-HHhhcCCCccchHHHHHHHHHHHHHhhh
Confidence 4444555666666765 6655544 34444444444444444433
No 21
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=48.94 E-value=26 Score=28.37 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=15.5
Q ss_pred HHHHHhhhhhhhcccCCchHHH-HHHHHHHHHHHHHHH
Q 031437 96 AVGGFVAGATVLGYKGKSISSA-ISAGAALAVTSSLID 132 (159)
Q Consensus 96 ~~gG~~aGa~vlg~~~g~~~~a-~~~~~~faa~s~~~~ 132 (159)
+++|.++|+. ++...++...+ ++.++.-|+...+.+
T Consensus 90 a~~Ga~~G~~-~g~~~~~~~g~~~G~GlaGalig~~ad 126 (215)
T PF05818_consen 90 ALAGAATGAA-IGAYNSGSAGAAIGAGLAGALIGMIAD 126 (215)
T ss_pred HHHHhHHhhh-hccccCCccchhhhhhHHHhHHHHHHh
Confidence 3444444544 34333223333 333555555555553
No 22
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=43.43 E-value=1.6e+02 Score=22.95 Aligned_cols=135 Identities=14% Similarity=0.026 Sum_probs=76.5
Q ss_pred hhhcccCCCCChHHHHHHHHHHHHHHHHHHHHH---HHh-hhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHH
Q 031437 4 SELRYLEDEDTPMMKTIKGATFGLVSGTIFGTV---VAT-WQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGV 79 (159)
Q Consensus 4 ~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~---~~~-~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~ 79 (159)
+|++-+.-..-.......++..|.+.|.+++++ ..+ ..+.....-+ ...+|.-+..+..+..-++..++.+.+
T Consensus 2 ~~~~r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g~rl~g~l~---av~~rap~~g~~Fav~g~lys~~ec~i 78 (170)
T TIGR00980 2 EEYTREPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKGEKLVGAMR---AIKTRAPVLGGNFAVWGGLFSTIDCAV 78 (170)
T ss_pred cccccCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCccchhhHHHH---HHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777888888887777776 222 2111110000 011112112234455556677777777
Q ss_pred HHHHHHHHhhcchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCccccCCCc
Q 031437 80 EQLVQHYRMKRDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDNGK 144 (159)
Q Consensus 80 ~c~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~~~~~~~~ 144 (159)
+..-++-=..|-.+-.++.|.+-++- -+.+. -...++.++++++++-.+=-.+ .++..++-+
T Consensus 79 ~~~R~KeD~~NsiiAG~~TGa~l~~r-~G~~a-~~~~aa~gg~~la~ie~~g~~~-~~~~~~~~~ 140 (170)
T TIGR00980 79 VAIRKKEDPWNSIISGFLTGAALAVR-GGPRA-MRGSAILGACILAVIEGVGLVL-TRWAAAQMD 140 (170)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhc-cChHH-HHHHHHHHHHHHHHHHHHHHHH-HHhhccccc
Confidence 77766655567777777777777765 55555 3677777777777766432222 344554433
No 23
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=41.17 E-value=13 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=18.9
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 031437 9 LEDEDTPMMKTIKGATFGLVSGTIFGTV 36 (159)
Q Consensus 9 ~~~~~~c~~k~~~~~~~G~~~G~~~G~~ 36 (159)
.+-.+-|+..++.-+..|+.+|.+++++
T Consensus 19 ~~kwD~cl~~~l~k~~~G~~~G~~~s~l 46 (75)
T PF04418_consen 19 GEKWDRCLSDTLVKTGLGFGIGVVFSLL 46 (75)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3344557777777777777777777763
No 24
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=40.01 E-value=49 Score=21.60 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 031437 22 GATFGLVSGTIFGT 35 (159)
Q Consensus 22 ~~~~G~~~G~~~G~ 35 (159)
+++.|+++|+..|+
T Consensus 4 g~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 4 GFLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 25
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=39.59 E-value=75 Score=20.40 Aligned_cols=40 Identities=30% Similarity=0.453 Sum_probs=24.0
Q ss_pred cchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHH
Q 031437 90 RDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLI 131 (159)
Q Consensus 90 ~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~ 131 (159)
.+.+..+++++++|+. .+...+.+..++. ++..++...++
T Consensus 23 ~~~~~~~~~~~~~G~~-~G~~~g~~~g~~~-Ga~~G~~~G~i 62 (65)
T PF10439_consen 23 GNCVGGVGGGAAGGAA-AGAAGGPPVGAVA-GAIVGAAVGAI 62 (65)
T ss_pred HHHHHHHHHHHHHHHH-HhhhccchhHHHH-HHHHHHHHHhh
Confidence 4456677888888876 7888774434444 44444444343
No 26
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=38.51 E-value=86 Score=20.53 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 031437 25 FGLVSGTIFGTVVATW 40 (159)
Q Consensus 25 ~G~~~G~~~G~~~~~~ 40 (159)
.++++|++.|+|.+-.
T Consensus 5 lali~G~~~Gff~ar~ 20 (64)
T PF03672_consen 5 LALIVGAVIGFFIARK 20 (64)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 27
>PF07019 Rab5ip: Rab5-interacting protein (Rab5ip)
Probab=38.23 E-value=64 Score=21.41 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=13.2
Q ss_pred HHHHHHHhhhhhhhcccC
Q 031437 94 NGAVGGFVAGATVLGYKG 111 (159)
Q Consensus 94 N~~~gG~~aGa~vlg~~~ 111 (159)
-+++.|+++| + ++++.
T Consensus 10 ~a~~~Gi~aG-I-LgLtg 25 (81)
T PF07019_consen 10 IALLAGIAAG-I-LGLTG 25 (81)
T ss_pred HHHHHHHHhh-h-ccccc
Confidence 3789999999 4 78887
No 28
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.73 E-value=39 Score=21.49 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=14.9
Q ss_pred HHHHHHHHHHh-hcchhHHH
Q 031437 78 GVEQLVQHYRM-KRDFVNGA 96 (159)
Q Consensus 78 ~~~c~~~~~Rg-k~D~~N~~ 96 (159)
-++-.++.+|. +||+.|-+
T Consensus 8 ~~~~~~~~lR~~RHD~~NhL 27 (62)
T PF14689_consen 8 ELEELIDSLRAQRHDFLNHL 27 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 45667788886 79999976
No 29
>PF08560 DUF1757: Protein of unknown function (DUF1757); InterPro: IPR013869 This entry shows proteins that are about 150 amino acids in length and have no known function.
Probab=29.74 E-value=2.5e+02 Score=21.36 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=25.7
Q ss_pred hhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 031437 3 PSELRYLEDEDTPMMKTIKGATFGLVSGTIFGTVV 37 (159)
Q Consensus 3 ~~~~~~~~~~~~c~~k~~~~~~~G~~~G~~~G~~~ 37 (159)
.+|+. +++.|...-++-...++.=+|.++|.+.
T Consensus 13 ~~~l~--~iP~P~~el~iHvt~k~~q~gs~lGsl~ 45 (155)
T PF08560_consen 13 DEELQ--DIPNPKTELTIHVTFKGAQAGSFLGSLI 45 (155)
T ss_pred HHHHh--cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 6788888888888888888888888877
No 30
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=27.10 E-value=1.1e+02 Score=24.14 Aligned_cols=31 Identities=6% Similarity=0.120 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh--hcchh
Q 031437 63 GNYGMTFAAIGGVYIGVEQLVQHYRM--KRDFV 93 (159)
Q Consensus 63 g~~~~~fa~~g~~ys~~~c~~~~~Rg--k~D~~ 93 (159)
...++.|++.+-+-.+.+..-+-.-+ .+||-
T Consensus 96 ~k~sK~fg~~~~~i~~~~~~~~~~~g~eTgnW~ 128 (187)
T PF01024_consen 96 AKFSKAFGITGKAIDAYDLREKFKKGIETGNWR 128 (187)
T ss_dssp HHHHGGGTSTTHHHHHHHHHHHHHHHHHHS--H
T ss_pred HHHHHHhcchHHHhhHHHHHHHHHHHHhcCCcH
Confidence 44555555555444444433333333 45553
No 31
>PLN02720 complex II
Probab=24.76 E-value=1.4e+02 Score=22.48 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=10.0
Q ss_pred HhhcchhHHHHHHHhhhhh
Q 031437 87 RMKRDFVNGAVGGFVAGAT 105 (159)
Q Consensus 87 Rgk~D~~N~~~gG~~aGa~ 105 (159)
|.-|...-++++|.+.|.+
T Consensus 89 k~phga~lsfl~G~~~G~~ 107 (140)
T PLN02720 89 KSPHGAALAFLGGGVFGWA 107 (140)
T ss_pred cCCchHHHHHhccchhhhh
Confidence 3345555555555555544
No 32
>PRK10666 ammonium transporter; Provisional
Probab=24.26 E-value=4.5e+02 Score=23.40 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=26.8
Q ss_pred HHHHHHhhcchhHHHHHHHhhhhhhhcccCC----chHHHHHHHHHHHHHHHH-HHhcCCccccCC
Q 031437 82 LVQHYRMKRDFVNGAVGGFVAGATVLGYKGK----SISSAISAGAALAVTSSL-IDAGGQTTRIDN 142 (159)
Q Consensus 82 ~~~~~Rgk~D~~N~~~gG~~aGa~vlg~~~g----~~~~a~~~~~~faa~s~~-~~~~g~~~~~~~ 142 (159)
.+++++.++--...+.-|.++|.+ +.... +|..++.-++.-|+++.. +.++-.++..||
T Consensus 269 ~~~~~~~gk~~~~~~~nG~LaGLV--aITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD 332 (428)
T PRK10666 269 FGEWALRGKPSLLGACSGAIAGLV--GVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDD 332 (428)
T ss_pred HHHHHHhCCCCHHHHHHHHhhhhh--hcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344454433224455566666632 33322 355555544444444432 334433455655
No 33
>PRK04032 hypothetical protein; Provisional
Probab=23.85 E-value=2.8e+02 Score=21.29 Aligned_cols=65 Identities=12% Similarity=-0.037 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcchhhccchhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 031437 16 MMKTIKGATFGLVSGTIFGTVVATWQDVPRVERRVALPGLIRTLKMMGNYGMTFAAIGGVYIGVEQLVQHYRMKRD 91 (159)
Q Consensus 16 ~~k~~~~~~~G~~~G~~~G~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~fa~~g~~ys~~~c~~~~~Rgk~D 91 (159)
+.|++.+.+.|.+.+.+.+.+...+.+.+. . .+. +.--.+...++++-+--.+|..++|-.+-+|
T Consensus 35 P~KTwEG~iGGv~~~~l~~~~~~~~~~~~~--~-----~~~----~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD 99 (159)
T PRK04032 35 DGKTWRGLIGGILFGTLVGLIQNLLVPAYI--G-----ALG----VAIILAFLLSFGALLGDMLGSFIKRRLGLER 99 (159)
T ss_pred CCCcHHHhHHHHHHHHHHHHHHHHHHccch--h-----HHH----HHHHHHHHHHHHHHHhhHHHHHHhhccCCCC
Confidence 578999998888888888776654321110 0 010 0012235556666777788999999999777
No 34
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=23.46 E-value=1.3e+02 Score=24.86 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHhhcchhHHHHHHHhhhhhhhcc-----cCCchHHHHHHHHHHHHHHHHHH
Q 031437 86 YRMKRDFVNGAVGGFVAGATVLGY-----KGKSISSAISAGAALAVTSSLID 132 (159)
Q Consensus 86 ~Rgk~D~~N~~~gG~~aGa~vlg~-----~~g~~~~a~~~~~~faa~s~~~~ 132 (159)
.|..+-+++.-++|+++|++ +|. ..++-...++.++.-|++..+.|
T Consensus 106 ~~~a~~~L~~Gy~ga~~Gaa-~G~~~~~y~~~~ag~~~G~Glagglig~~ad 156 (243)
T PRK13731 106 LRESQGWLNRGYEGAAVGAA-LGAGITGYNSNSAGATLGVGLAAGLVGMAAD 156 (243)
T ss_pred HHHHHHHHhhchhhHHHHHH-hhhhhhcccCCcchhhHHHHHHHHHHHHHhh
Confidence 44444455555666666664 432 33333333443444444444443
No 35
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.43 E-value=2.1e+02 Score=18.80 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 031437 18 KTIKGATFGLVSGTIFGTVVA 38 (159)
Q Consensus 18 k~~~~~~~G~~~G~~~G~~~~ 38 (159)
+...-.+.|+++|+++|+...
T Consensus 57 ~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 57 KRALILALGLFLGLILGIGLA 77 (82)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666665443
Done!