Query 031437
Match_columns 159
No_of_seqs 109 out of 699
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 22:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2elu_A Zinc finger protein 406 32.2 14 0.00047 20.3 0.6 18 76-93 19-36 (37)
2 2b2h_A AMT-1, ammonium transpo 24.4 2.4E+02 0.0083 23.5 7.4 61 80-142 234-297 (399)
3 1cii_A Colicin IA; bacteriocin 20.0 45 0.0015 29.1 1.9 68 63-132 511-591 (602)
4 1ixm_A SPO0B, protein (sporula 19.6 59 0.002 24.2 2.4 24 77-100 16-42 (192)
5 2ot8_C HnRNP M, heterogeneous 18.1 45 0.0016 17.7 1.0 12 143-154 18-30 (30)
6 2imj_A Hypothetical protein DU 14.3 64 0.0022 23.8 1.3 17 80-96 17-33 (166)
7 1u7g_A Probable ammonium trans 14.2 4.7E+02 0.016 21.6 6.8 60 81-142 246-310 (385)
8 2lbg_A Major prion protein; co 13.8 1.6E+02 0.0055 15.2 3.5 20 20-39 4-23 (27)
9 2jm6_A NOXA; apoptosis, BCL-2, 12.1 1.1E+02 0.0037 15.6 1.4 14 79-94 6-19 (27)
10 1jgn_B PAIP2, polyadenylate-bi 10.4 1.4E+02 0.0047 15.0 1.4 13 137-149 4-16 (26)
No 1
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=32.16 E-value=14 Score=20.31 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhcchh
Q 031437 76 YIGVEQLVQHYRMKRDFV 93 (159)
Q Consensus 76 ys~~~c~~~~~Rgk~D~~ 93 (159)
|+-++..++.+|..||+.
T Consensus 19 ysdvknlikhire~hd~~ 36 (37)
T 2elu_A 19 YSDVKNLIKHIRDAHDPQ 36 (37)
T ss_dssp CSSHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 556777888999988863
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=24.43 E-value=2.4e+02 Score=23.55 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcch---hHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 031437 80 EQLVQHYRMKRDF---VNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQTTRIDN 142 (159)
Q Consensus 80 ~c~~~~~Rgk~D~---~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~~~~~~~ 142 (159)
-..++.+|+|-|. .|..++|.++=.. +...-+|..++.-++.-|+++....++-.|+..||
T Consensus 234 ~~~~~~~~gk~~~~~~~nG~lAGLVaITa--~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~iDD 297 (399)
T 2b2h_A 234 WMVIGWIKGKPGSLGIVSGAIAGLAAITP--AAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDE 297 (399)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTT--TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhhcc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3456777766665 3555555553211 12222466666555555555433333333455554
No 3
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=19.99 E-value=45 Score=29.11 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=34.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh--hcchhHHH-----------HHHHhhhhhhhcccCCchHHHHHHHHHHHHHHH
Q 031437 63 GNYGMTFAAIGGVYIGVEQLVQHYRM--KRDFVNGA-----------VGGFVAGATVLGYKGKSISSAISAGAALAVTSS 129 (159)
Q Consensus 63 g~~~~~fa~~g~~ys~~~c~~~~~Rg--k~D~~N~~-----------~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~ 129 (159)
+.+++.|++.+-+..+.+...+-.-+ .+|| .++ ++..++..+ +++--+.|...++.++..|.+++
T Consensus 511 ~kfSKaFg~tgKvIka~DV~eK~kkG~ETGNW-rPLfLELES~aaG~aASaVaAfa-FS~~lGtPLGIlGiALImAvVgS 588 (602)
T 1cii_A 511 NRFSRGLGYAGKFTSLADWITEFGKAVRTENW-RPLFVKTETIIAGNAATALVALV-FSILTGSALGIIGYGLLMAVTGA 588 (602)
T ss_dssp HHHHHHHTCCSCBCCHHHHHHHHHHHHHSTTC-HHHHHHHTTTBTTCBHHHHHHHH-HHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHhhhHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555555555666655555444 3444 443 122222222 45555545455555677777776
Q ss_pred HHH
Q 031437 130 LID 132 (159)
Q Consensus 130 ~~~ 132 (159)
.||
T Consensus 589 lID 591 (602)
T 1cii_A 589 LID 591 (602)
T ss_dssp HHC
T ss_pred Hhc
Confidence 663
No 4
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=19.57 E-value=59 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHh-hcchhHHH--HHHH
Q 031437 77 IGVEQLVQHYRM-KRDFVNGA--VGGF 100 (159)
Q Consensus 77 s~~~c~~~~~Rg-k~D~~N~~--~gG~ 100 (159)
++++-.++.+|. +|||.|-+ +.|.
T Consensus 16 ~~~~~~~~~LR~qrHdf~NkLqvI~GL 42 (192)
T 1ixm_A 16 ALTNELIHLLGHSRHDWMNKLQLIKGN 42 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456778888995 79999965 4554
No 5
>2ot8_C HnRNP M, heterogeneous nuclear ribonucleoprotein M; heat repeat, nuclear import complex, karyopherin, transport protein; 3.10A {Homo sapiens}
Probab=18.10 E-value=45 Score=17.65 Aligned_cols=12 Identities=42% Similarity=0.949 Sum_probs=9.0
Q ss_pred CcccCCC-ccCCC
Q 031437 143 GKEYYPY-TTKKR 154 (159)
Q Consensus 143 ~~~~~~~-~~~~~ 154 (159)
+-.|+|| +|.||
T Consensus 18 gnrfepY~Np~kR 30 (30)
T 2ot8_C 18 GNRFEPYANPTKR 30 (30)
T ss_pred CcccccccCccCC
Confidence 4678888 77776
No 6
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=14.27 E-value=64 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHHHHHhhcchhHHH
Q 031437 80 EQLVQHYRMKRDFVNGA 96 (159)
Q Consensus 80 ~c~~~~~Rgk~D~~N~~ 96 (159)
|.+++++|--+|.||+=
T Consensus 17 EtA~~KVr~AEDaWNsr 33 (166)
T 2imj_A 17 ESAIEKIRLAEDGWNSR 33 (166)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhhccc
Confidence 56788999999999975
No 7
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=14.21 E-value=4.7e+02 Score=21.63 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=27.0
Q ss_pred HHHHHHH-hhcch---hHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHH-HHhcCCccccCC
Q 031437 81 QLVQHYR-MKRDF---VNGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSSL-IDAGGQTTRIDN 142 (159)
Q Consensus 81 c~~~~~R-gk~D~---~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~-~~~~g~~~~~~~ 142 (159)
..++.+| +|-|. .|..++|.++=-. +...-+|..++.-++.-|+++.. ++++-.|+..||
T Consensus 246 ~~~~~~~~gk~~~~~~~nG~lAGLVaITa--~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l~iDD 310 (385)
T 1u7g_A 246 IFGEWALRGLPSLLGACSGAIAGLVGVTP--ACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDD 310 (385)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHTT--TTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhhhhcc--CCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC
Confidence 3456665 45554 3555555543211 22222466665555555544432 222323455554
No 8
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=13.85 E-value=1.6e+02 Score=15.15 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031437 20 IKGATFGLVSGTIFGTVVAT 39 (159)
Q Consensus 20 ~~~~~~G~~~G~~~G~~~~~ 39 (159)
+.++..|.++|.+-|.+.++
T Consensus 4 ~ga~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 4 AGAAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHHHHH
Confidence 44566667777766665554
No 9
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=12.11 E-value=1.1e+02 Score=15.64 Aligned_cols=14 Identities=36% Similarity=0.164 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhcchhH
Q 031437 79 VEQLVQHYRMKRDFVN 94 (159)
Q Consensus 79 ~~c~~~~~Rgk~D~~N 94 (159)
+||+ ++|.--|.+|
T Consensus 6 veca--qlr~~gdkln 19 (27)
T 2jm6_A 6 DECA--QLRRIGDKVN 19 (27)
T ss_dssp HHHH--HHHHHHHHHH
T ss_pred HHHH--HHHHHhHHHH
Confidence 5677 7776666666
No 10
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=10.38 E-value=1.4e+02 Score=15.02 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=9.3
Q ss_pred ccccCCCcccCCC
Q 031437 137 TTRIDNGKEYYPY 149 (159)
Q Consensus 137 ~~~~~~~~~~~~~ 149 (159)
+..+++.+||.|.
T Consensus 4 s~lnp~akef~pg 16 (26)
T 1jgn_B 4 SNLNPNAKEFVPG 16 (26)
T ss_dssp CSSCTTCCCCCTT
T ss_pred ccCCcchhhcCCC
Confidence 3445778999885
Done!