Query 031437
Match_columns 159
No_of_seqs 109 out of 699
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 22:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031437.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031437hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 26.6 42 0.0031 18.2 3.6 28 108-135 6-33 (45)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 13.4 2.6E+02 0.019 21.1 7.1 58 83-142 246-308 (383)
3 d2imja1 d.17.4.23 (A:5-159) Hy 12.5 36 0.0026 23.2 1.3 16 80-95 13-28 (155)
4 d1ciia1 f.1.1.1 (A:451-624) Co 11.7 54 0.0039 22.8 2.1 26 107-132 138-163 (174)
5 d2o35a1 a.293.1.1 (A:2-80) Hyp 9.1 83 0.006 18.9 2.0 24 78-101 15-41 (79)
6 d1g3nc2 a.74.1.1 (C:148-253) V 7.9 2E+02 0.015 17.2 3.5 36 90-126 22-57 (106)
7 d1vpua_ g.34.1.1 (A:) HIV-1 VP 7.0 1.3E+02 0.0094 16.0 2.0 16 79-94 3-19 (45)
8 d1t5ja_ a.209.1.1 (A:) Hypothe 5.4 2.1E+02 0.015 19.9 3.1 34 77-111 239-273 (301)
9 d1rkda_ c.72.1.1 (A:) Ribokina 5.0 3.5E+02 0.025 17.7 4.0 35 96-136 254-288 (306)
10 d2jn4a1 b.173.1.1 (A:1-66) Unc 5.0 60 0.0043 18.9 -0.4 13 134-146 34-46 (66)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=26.57 E-value=42 Score=18.16 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=21.0
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHhcC
Q 031437 108 GYKGKSISSAISAGAALAVTSSLIDAGG 135 (159)
Q Consensus 108 g~~~g~~~~a~~~~~~faa~s~~~~~~g 135 (159)
.+++|-.+..-..+.+..++.+++.|.+
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv~ 33 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYIG 33 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhe
Confidence 4566666777777788888888998864
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=13.45 E-value=2.6e+02 Score=21.07 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=25.9
Q ss_pred HHHHH-hhcchh---HHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHH-HHHhcCCccccCC
Q 031437 83 VQHYR-MKRDFV---NGAVGGFVAGATVLGYKGKSISSAISAGAALAVTSS-LIDAGGQTTRIDN 142 (159)
Q Consensus 83 ~~~~R-gk~D~~---N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~-~~~~~g~~~~~~~ 142 (159)
+++++ +|-|.. |..++|.++-.. +..-=.|..++.-++.-++++. ..+++-.|+..||
T Consensus 246 ~~~~~~~k~~~~~~~nG~LaGLVaita--~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD 308 (383)
T d1u7ga_ 246 GEWALRGLPSLLGACSGAIAGLVGVTP--ACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDD 308 (383)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHTT--TTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHhcCCCCHHHHHHHhhhhhhhccc--CccccchhhHHHHHhhccHHHHHHHHHHHhhccccc
Confidence 33434 455543 666666665432 2222246655554444444443 2233323444554
No 3
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=12.54 E-value=36 Score=23.16 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.9
Q ss_pred HHHHHHHHhhcchhHH
Q 031437 80 EQLVQHYRMKRDFVNG 95 (159)
Q Consensus 80 ~c~~~~~Rgk~D~~N~ 95 (159)
+.+.+++|--+|.||+
T Consensus 13 etA~~KVr~AEdaWNs 28 (155)
T d2imja1 13 ESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 5678899999999997
No 4
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=11.73 E-value=54 Score=22.77 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=17.1
Q ss_pred hcccCCchHHHHHHHHHHHHHHHHHH
Q 031437 107 LGYKGKSISSAISAGAALAVTSSLID 132 (159)
Q Consensus 107 lg~~~g~~~~a~~~~~~faa~s~~~~ 132 (159)
++..-|++-..++.++..+.+++.||
T Consensus 138 fs~~~g~~lgi~g~ali~~~v~a~Id 163 (174)
T d1ciia1 138 FSILTGSALGIIGYGLLMAVTGALID 163 (174)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhC
Confidence 34455556666666777888877764
No 5
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=9.09 E-value=83 Score=18.90 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhcchhHHH---HHHHh
Q 031437 78 GVEQLVQHYRMKRDFVNGA---VGGFV 101 (159)
Q Consensus 78 ~~~c~~~~~Rgk~D~~N~~---~gG~~ 101 (159)
.++-.++.+|.+.|..|== ++||+
T Consensus 15 aFrrL~~HL~~r~dVQNIDLMnLaGFC 41 (79)
T d2o35a1 15 VFRRLLEHLRERSDVQNIDLMNLAGFC 41 (79)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 4577889999999988853 35554
No 6
>d1g3nc2 a.74.1.1 (C:148-253) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=7.93 E-value=2e+02 Score=17.16 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=19.7
Q ss_pred cchhHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHH
Q 031437 90 RDFVNGAVGGFVAGATVLGYKGKSISSAISAGAALAV 126 (159)
Q Consensus 90 ~D~~N~~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa 126 (159)
-|+|..-+--.++-+. +---.|++|+.+.++++++.
T Consensus 22 ldfwhhevntlitkal-vdpltgslpasiisaagcal 57 (106)
T d1g3nc2 22 LDFWHHEVNTLITKAL-VDPLTGSLPASIISAAGCAL 57 (106)
T ss_dssp HHHHHHHHHHHHHHHH-TSTTGGGSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh-hCcccCCCcHHHHhhcceeE
Confidence 3555444444555554 34445566766666666654
No 7
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=7.01 E-value=1.3e+02 Score=16.03 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=11.0
Q ss_pred HHHHHHHHHhh-cchhH
Q 031437 79 VEQLVQHYRMK-RDFVN 94 (159)
Q Consensus 79 ~~c~~~~~Rgk-~D~~N 94 (159)
.+..+++||.+ +|.-|
T Consensus 3 IdrLi~RIrERAEDSGN 19 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGN 19 (45)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcccCCC
Confidence 35678888875 66555
No 8
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.42 E-value=2.1e+02 Score=19.86 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcch-hHHHHHHHhhhhhhhcccC
Q 031437 77 IGVEQLVQHYRMKRDF-VNGAVGGFVAGATVLGYKG 111 (159)
Q Consensus 77 s~~~c~~~~~Rgk~D~-~N~~~gG~~aGa~vlg~~~ 111 (159)
+..+++...++.-.|. .|+.+.|++.|+. .|...
T Consensus 239 ~f~~ai~~av~~GgDtdt~aai~Gal~GA~-~G~~~ 273 (301)
T d1t5ja_ 239 NFKEGMLKCINAGGDTDSLASMYGAMAGAY-YGFKN 273 (301)
T ss_dssp SHHHHHHHHHTSCBSHHHHHHHHHHHHHHH-HCGGG
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHHHHHH-hChhc
Confidence 3455666777754444 4777888888876 67654
No 9
>d1rkda_ c.72.1.1 (A:) Ribokinase {Escherichia coli [TaxId: 562]}
Probab=5.02 E-value=3.5e+02 Score=17.70 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHhhhhhhhcccCCchHHHHHHHHHHHHHHHHHHhcCC
Q 031437 96 AVGGFVAGATVLGYKGKSISSAISAGAALAVTSSLIDAGGQ 136 (159)
Q Consensus 96 ~~gG~~aGa~vlg~~~g~~~~a~~~~~~faa~s~~~~~~g~ 136 (159)
++||++.|. +...++..++..+..+|++ .+.+.|-
T Consensus 254 f~Ag~l~~l----~~g~~~~~a~~~a~~~aa~--~v~~~G~ 288 (306)
T d1rkda_ 254 FNGALITAL----LEEKPLPEAIRFAHAAAAI--AVTRKGA 288 (306)
T ss_dssp HHHHHHHHH----HTTCCHHHHHHHHHHHHHH--HHTSSSS
T ss_pred HHHHHHHHH----HcCCCHHHHHHHHHHHHHH--HhCCCCC
Confidence 456666552 2233577666655554443 3444544
No 10
>d2jn4a1 b.173.1.1 (A:1-66) Uncharacterized protein FixU (NifT) {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=4.95 E-value=60 Score=18.94 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=10.4
Q ss_pred cCCccccCCCccc
Q 031437 134 GGQTTRIDNGKEY 146 (159)
Q Consensus 134 ~g~~~~~~~~~~~ 146 (159)
.|+.+...|||+|
T Consensus 34 wGG~vtL~NGw~l 46 (66)
T d2jn4a1 34 WGGKVTLANGWQL 46 (66)
T ss_dssp CSSEEEETTSCEE
T ss_pred cCCEEEeCCccEE
Confidence 4677778999888
Done!