Query 031438
Match_columns 159
No_of_seqs 158 out of 706
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 22:45:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kw0_A CCMH protein; oxidoredu 100.0 3.9E-39 1.3E-43 235.1 8.9 80 5-84 4-83 (90)
2 2hl7_A Cytochrome C-type bioge 100.0 1.1E-38 3.9E-43 230.0 8.0 77 6-82 8-84 (84)
3 2qsr_A Transcription-repair co 78.6 2.6 8.7E-05 32.7 4.6 31 44-74 27-60 (173)
4 3hot_A Transposable element ma 72.0 7.2 0.00025 31.3 5.8 34 41-74 6-39 (345)
5 2l2t_A Receptor tyrosine-prote 57.8 7.9 0.00027 24.2 2.7 11 100-110 28-38 (44)
6 2ks1_B Epidermal growth factor 57.7 8.1 0.00028 24.1 2.7 11 100-110 29-39 (44)
7 3omd_A Uncharacterized protein 57.5 8.3 0.00028 29.6 3.3 23 48-70 63-85 (145)
8 2bx2_L Ribonuclease E, RNAse E 56.7 13 0.00045 33.7 5.0 33 26-58 410-442 (517)
9 2jwa_A Receptor tyrosine-prote 55.3 8.4 0.00029 24.1 2.5 6 104-109 33-38 (44)
10 3vhs_A ATPase wrnip1; zinc fin 53.2 3.7 0.00013 23.4 0.5 10 24-33 6-15 (29)
11 3l11_A E3 ubiquitin-protein li 50.5 4.6 0.00016 28.0 0.8 55 24-79 50-114 (115)
12 1tc3_C Protein (TC3 transposas 50.3 25 0.00084 19.3 3.9 25 43-67 7-31 (51)
13 2xv9_A ABA-1A1 repeat UNIT; li 49.0 21 0.0007 27.0 4.2 32 42-73 21-52 (134)
14 3ga8_A HTH-type transcriptiona 48.1 7.3 0.00025 26.0 1.5 40 25-64 37-77 (78)
15 2ahq_A Sigma-54, RNA polymeras 47.7 14 0.00049 25.2 2.9 30 41-70 16-50 (76)
16 4ddj_A Saposin-A, protein A; s 47.2 24 0.00083 23.1 4.0 33 41-74 7-39 (83)
17 2jvw_A Uncharacterized protein 45.4 12 0.00042 26.6 2.3 22 56-77 13-34 (88)
18 1qjc_A Phosphopantetheine aden 45.3 19 0.00065 25.8 3.5 25 48-72 129-158 (158)
19 2blf_B SORB, sulfite\:cytochro 44.0 28 0.00095 23.0 3.9 54 17-71 20-81 (81)
20 1od6_A PPAT, phosphopantethein 43.4 21 0.00071 25.7 3.4 24 49-72 131-159 (160)
21 1b0n_B Protein (SINI protein); 42.4 33 0.0011 22.3 3.9 31 41-71 10-40 (57)
22 2ooa_A E3 ubiquitin-protein li 41.6 28 0.00096 22.5 3.4 28 47-74 12-39 (52)
23 2bwb_A Ubiquitin-like protein 39.7 38 0.0013 20.6 3.7 31 44-74 5-36 (46)
24 3nau_A Zinc fingers and homeob 38.9 42 0.0014 22.4 4.1 26 43-70 30-55 (66)
25 1use_A VAsp, vasodilator-stimu 38.9 47 0.0016 20.9 4.0 25 41-71 15-39 (45)
26 2vxg_A LD41624, GE-1, CG6181-P 36.7 25 0.00085 26.4 3.0 35 45-79 2-47 (139)
27 3bqp_A Proactivator polypeptid 36.6 40 0.0014 21.4 3.7 31 40-70 5-35 (80)
28 3d3m_A Eukaryotic translation 36.2 51 0.0017 24.8 4.7 31 45-75 3-33 (168)
29 3g2b_A Coenzyme PQQ synthesis 36.1 23 0.00077 24.7 2.5 27 48-74 46-72 (95)
30 2oo9_A E3 ubiquitin-protein li 36.1 45 0.0016 21.0 3.6 26 45-70 3-28 (46)
31 2d9s_A CBL E3 ubiquitin protei 34.1 44 0.0015 21.6 3.4 26 49-74 12-37 (53)
32 2knz_A Ubiquilin-4; cytoplasm, 33.8 61 0.0021 20.1 4.1 32 43-74 8-40 (53)
33 1wr1_B Ubiquitin-like protein 33.5 63 0.0021 20.7 4.2 36 39-74 10-46 (58)
34 3u5c_N S27A, YS15, 40S ribosom 33.1 52 0.0018 25.5 4.3 31 42-72 29-59 (151)
35 1ify_A HHR23A, UV excision rep 32.8 64 0.0022 19.7 4.0 28 46-73 8-35 (49)
36 2xzm_O RPS13E; ribosome, trans 32.4 55 0.0019 25.4 4.4 31 42-72 31-61 (153)
37 1ef4_A Subunit N, DNA-directed 32.3 49 0.0017 21.5 3.5 34 25-67 4-37 (55)
38 1z96_A DNA-damage, UBA-domain 32.3 67 0.0023 18.0 3.8 26 48-73 6-31 (40)
39 3j20_Q 30S ribosomal protein S 31.9 53 0.0018 25.6 4.2 31 42-72 29-59 (158)
40 2gmg_A Hypothetical protein PF 31.8 17 0.0006 26.5 1.4 16 22-37 82-97 (105)
41 3l6a_A Eukaryotic translation 31.6 23 0.00078 30.2 2.3 36 44-79 198-233 (364)
42 4ev6_A Magnesium transport pro 31.6 92 0.0032 25.5 6.0 20 65-84 293-312 (339)
43 2gtg_A Proactivator polypeptid 31.4 74 0.0025 20.5 4.4 32 40-71 7-38 (83)
44 3lm3_A Uncharacterized protein 30.5 23 0.00078 31.3 2.1 21 61-81 89-112 (449)
45 2rdd_B UPF0092 membrane protei 29.1 37 0.0013 19.8 2.3 8 89-96 5-12 (37)
46 3v7d_A Suppressor of kinetocho 29.0 36 0.0012 25.8 2.8 17 50-67 129-145 (169)
47 1l9l_A Granulysin; saposin fol 28.9 56 0.0019 21.7 3.5 26 41-67 5-30 (74)
48 2jy5_A Ubiquilin-1; UBA, alter 28.7 41 0.0014 20.9 2.6 31 44-74 10-41 (52)
49 1nkl_A NK-lysin; saposin fold, 28.5 69 0.0024 20.9 3.9 28 41-68 5-32 (78)
50 3qho_A Endoglucanase, 458AA lo 28.3 12 0.00042 32.7 0.0 20 90-109 438-457 (458)
51 1vg5_A RSGI RUH-014, rhomboid 28.0 62 0.0021 21.8 3.6 29 46-74 29-57 (73)
52 3rfi_A Asp; PSI, saposin, hydr 27.4 23 0.00079 25.0 1.3 33 37-69 70-102 (108)
53 1l8d_A DNA double-strand break 27.1 35 0.0012 23.6 2.3 13 24-37 47-59 (112)
54 3ulq_B Transcriptional regulat 25.5 61 0.0021 21.8 3.2 20 48-67 35-54 (90)
55 1j1j_A Translin; testis/brain 24.9 83 0.0029 25.3 4.4 42 40-81 157-200 (240)
56 2ys9_A Homeobox and leucine zi 24.8 72 0.0025 21.7 3.4 22 55-76 42-63 (70)
57 1fs1_B SKP1, cyclin A/CDK2-ass 24.3 41 0.0014 24.5 2.3 18 49-67 116-133 (141)
58 2g3q_A Protein YBL047C; endocy 24.2 94 0.0032 18.0 3.5 26 48-73 6-31 (43)
59 3p8b_A DNA-directed RNA polyme 24.2 40 0.0014 23.6 2.0 22 26-47 37-69 (81)
60 1oeg_A Apolipoprotein E; siali 24.1 21 0.00071 20.0 0.5 15 41-55 1-15 (26)
61 3flo_B DNA polymerase alpha ca 23.9 45 0.0015 26.6 2.6 29 24-55 49-77 (206)
62 1vlh_A Phosphopantetheine aden 23.8 67 0.0023 23.9 3.4 25 49-73 141-170 (173)
63 3o9x_A Uncharacterized HTH-typ 23.7 82 0.0028 21.8 3.7 48 24-72 36-84 (133)
64 1pft_A TFIIB, PFTFIIBN; N-term 23.5 26 0.00088 21.2 0.9 15 24-38 5-20 (50)
65 2ga1_A Protein of unknown func 23.3 50 0.0017 23.8 2.5 19 49-67 56-74 (106)
66 2x48_A CAG38821; archeal virus 23.2 1.2E+02 0.004 17.6 3.9 23 45-67 19-41 (55)
67 4ayb_N DNA-directed RNA polyme 23.2 73 0.0025 21.4 3.1 34 25-67 5-38 (66)
68 1vej_A Riken cDNA 4931431F19; 22.5 84 0.0029 21.2 3.4 33 42-74 25-58 (74)
69 3bld_A Queuine tRNA-ribosyltra 22.5 24 0.00083 30.7 0.8 49 23-71 316-382 (386)
70 1xkp_A Putative membrane-bound 22.3 1.1E+02 0.0037 24.9 4.6 33 42-74 163-195 (246)
71 1cch_A Cytochrome C551; electr 22.3 1.2E+02 0.0042 18.5 4.1 17 19-35 4-20 (82)
72 2qtr_A Nicotinate (nicotinamid 22.1 80 0.0027 23.2 3.5 22 49-70 158-184 (189)
73 1of9_A Pore-forming peptide am 21.9 72 0.0025 20.8 2.9 34 40-75 5-38 (77)
74 1dl6_A Transcription factor II 21.9 28 0.00097 22.2 0.8 17 22-38 9-26 (58)
75 1ldf_A Glycerol uptake facilit 21.8 86 0.0029 25.6 4.0 19 84-102 232-250 (281)
76 3kor_A Possible Trp repressor; 21.8 68 0.0023 23.7 3.0 25 43-67 61-85 (119)
77 2dna_A Unnamed protein product 21.6 98 0.0034 20.6 3.5 36 39-74 12-48 (67)
78 3fm3_A Methionine aminopeptida 21.5 47 0.0016 28.0 2.4 26 40-65 52-77 (358)
79 2dah_A Ubiquilin-3; UBA domain 21.4 98 0.0033 19.4 3.4 29 46-74 9-38 (54)
80 2jpc_A SSRB; DNA binding prote 21.3 62 0.0021 19.2 2.4 20 48-67 4-23 (61)
81 3g0m_A Cysteine desulfuration 21.3 68 0.0023 24.0 3.0 29 36-65 74-102 (141)
82 2ash_A Queuine tRNA-ribosyltra 21.3 23 0.00078 30.9 0.4 51 23-73 309-377 (381)
83 3axj_A GM27569P, translin; tra 21.1 1.1E+02 0.0036 24.9 4.3 41 41-81 161-203 (249)
84 2vw8_A PA1000, PQSE; quinolone 21.0 73 0.0025 24.9 3.3 29 46-74 243-274 (303)
85 3gx8_A Monothiol glutaredoxin- 21.0 2E+02 0.0068 20.0 5.4 63 11-73 2-72 (121)
86 3llk_A Sulfhydryl oxidase 1; d 20.9 70 0.0024 26.4 3.3 33 24-74 221-253 (261)
87 2e19_A Transcription factor 8; 20.8 1.7E+02 0.0057 18.5 4.5 33 46-80 32-64 (64)
88 2kse_A Sensor protein QSEC; me 20.7 94 0.0032 21.4 3.5 20 87-106 164-183 (186)
89 2juj_A E3 ubiquitin-protein li 20.6 90 0.0031 20.4 3.1 25 46-70 7-31 (56)
90 2kpi_A Uncharacterized protein 20.4 34 0.0012 21.9 1.0 13 21-33 7-19 (56)
91 1ni7_A ER75, hypothetical prot 20.4 67 0.0023 24.5 2.8 43 36-79 81-127 (155)
No 1
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=100.00 E-value=3.9e-39 Score=235.08 Aligned_cols=80 Identities=29% Similarity=0.478 Sum_probs=76.6
Q ss_pred chHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCCch
Q 031438 5 DDELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFDLQ 84 (159)
Q Consensus 5 ~~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~~~ 84 (159)
..+.|+||++|+|+++|+++||||+||||||+||||++|.|||.+||+||++|+||+||++|||+||||||||+||+++.
T Consensus 4 ~~~~~~~~~~e~r~~~L~~~LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd~eI~~~mv~RYGdfVly~Pp~~~~ 83 (90)
T 2kw0_A 4 DVLQFKDEAQEQQFRQLTEELRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPL 83 (90)
T ss_dssp SSCCCSSHHHHHHHHHHHHSSBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCBCSCCSCC-
T ss_pred ccccCCCHHHHHHHHHHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeEEeeCCCCch
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-38 Score=229.97 Aligned_cols=77 Identities=34% Similarity=0.544 Sum_probs=73.3
Q ss_pred hHhhhcHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccCCCC
Q 031438 6 DELKKKQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPKFD 82 (159)
Q Consensus 6 ~~~~~d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp~~ 82 (159)
.+.|+||++|+|+++|+++||||+||||||+||||++|+|||.+||+||++|+||+||++|||+||||||||+||++
T Consensus 8 ~~~~~~~~~e~r~~~l~~~LRCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd~eI~~~~v~RYG~fVly~Pp~~ 84 (84)
T 2hl7_A 8 TYEFASDAERERFRNLTQELRCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSDGEIVDYMVARYGDFVRYKPPVN 84 (84)
T ss_dssp GSCCSSHHHHHHHHHHHHHEECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTCEECCC--
T ss_pred cccCCCHHHHHHHHHHHHcCcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCeeeeeCCCC
Confidence 44789999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=78.64 E-value=2.6 Score=32.71 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCChHH---HHHHHHHhhccc
Q 031438 44 ILLRKLIRDEIQAGKTDKE---VYKKLEDDFGET 74 (159)
Q Consensus 44 ~dmR~~Ir~~l~~G~Sd~e---I~~~~v~RYGd~ 74 (159)
...|-.+|++|+.=.|++| |.+.|++|||+.
T Consensus 27 ~~~RL~lYkria~~~~~eel~~l~~EL~DRFG~l 60 (173)
T 2qsr_A 27 QRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEY 60 (173)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCC
Confidence 3679999999999999988 567799999984
No 4
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=72.02 E-value=7.2 Score=31.30 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 41 DIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
+...++|..|.....+|+|..+|...|.++||+.
T Consensus 6 ~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~ 39 (345)
T 3hot_A 6 PNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQ 39 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSC
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCC
Confidence 3467899999999999999999999999999975
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.78 E-value=7.9 Score=24.20 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=5.1
Q ss_pred HHHHHHHHhhc
Q 031438 100 AGIWAYNRHRQ 110 (159)
Q Consensus 100 ~~~~~~~rrr~ 110 (159)
++++++.|||+
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 33445555543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=57.74 E-value=8.1 Score=24.08 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=5.2
Q ss_pred HHHHHHHHhhc
Q 031438 100 AGIWAYNRHRQ 110 (159)
Q Consensus 100 ~~~~~~~rrr~ 110 (159)
++++++.|||+
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 34445555543
No 7
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=57.48 E-value=8.3 Score=29.61 Aligned_cols=23 Identities=4% Similarity=0.241 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh
Q 031438 48 KLIRDEIQAGKTDKEVYKKLEDD 70 (159)
Q Consensus 48 ~~Ir~~l~~G~Sd~eI~~~~v~R 70 (159)
.++.+.|..|.||+||.+++.++
T Consensus 63 ~~~~~~V~~~~sD~eil~wv~~~ 85 (145)
T 3omd_A 63 EKFAEAVKSRPQDQDMLAWVHSQ 85 (145)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 45677788999999999999998
No 8
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=56.71 E-value=13 Score=33.68 Aligned_cols=33 Identities=15% Similarity=0.412 Sum_probs=27.2
Q ss_pred cCCCCCCCCccccCcHHHHHHHHHHHHHHHcCC
Q 031438 26 RCTDCGSQSIEDSQADIAILLRKLIRDEIQAGK 58 (159)
Q Consensus 26 RCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~ 58 (159)
-||.|.|.-.--|...+|.++.++|.+......
T Consensus 410 ~Cp~C~G~G~v~s~~~~~~~i~R~i~~~~~~~~ 442 (517)
T 2bx2_L 410 VCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 442 (517)
T ss_dssp CCSSSSSSSCCCCHHHHHHHHHHHHHHHHHSTT
T ss_pred cCCCcCCceeECCHHHHHHHHHHHHHHHHhhcC
Confidence 699999988777888899999999888766543
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=55.29 E-value=8.4 Score=24.12 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.3
Q ss_pred HHHHhh
Q 031438 104 AYNRHR 109 (159)
Q Consensus 104 ~~~rrr 109 (159)
++.|||
T Consensus 33 ~~~RRR 38 (44)
T 2jwa_A 33 ILIKRR 38 (44)
T ss_dssp HHHHHH
T ss_pred hheehh
Confidence 333333
No 10
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=53.15 E-value=3.7 Score=23.43 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=8.0
Q ss_pred cccCCCCCCC
Q 031438 24 NVRCTDCGSQ 33 (159)
Q Consensus 24 ~LRCpvCqnq 33 (159)
++.|||||..
T Consensus 6 ~vqcpvcqq~ 15 (29)
T 3vhs_A 6 QVQCPVCQQM 15 (29)
T ss_dssp EEECTTTCCE
T ss_pred eeeChHHHHh
Confidence 5689999864
No 11
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=50.50 E-value=4.6 Score=28.04 Aligned_cols=55 Identities=15% Similarity=0.294 Sum_probs=22.5
Q ss_pred cccCCCCCCCCcc------ccCcHHHHHHHHHHHHH----HHcCCChHHHHHHHHHhhcccccccC
Q 031438 24 NVRCTDCGSQSIE------DSQADIAILLRKLIRDE----IQAGKTDKEVYKKLEDDFGETVLYAP 79 (159)
Q Consensus 24 ~LRCpvCqnqsia------dSna~~A~dmR~~Ir~~----l~~G~Sd~eI~~~~v~RYGd~VL~~P 79 (159)
...||.|....-. ..+..+-..|...|.+. .++-...+|.-+ +++.||+.-++.-
T Consensus 50 ~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~~~~~r~~~~e~e~-~~~~~~p~~~~s~ 114 (115)
T 3l11_A 50 SLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEE-VADDYQPVRLLSK 114 (115)
T ss_dssp TSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHHHHHHHHHC----------CCSCCCSCC
T ss_pred cCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCHHHHHHHhhhhHHH-HHHhhCCceeccC
Confidence 4689999765321 12222223333333332 333333334433 7899998766543
No 12
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=50.32 E-value=25 Score=19.33 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHH
Q 031438 43 AILLRKLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 43 A~dmR~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
..+.+..|..++.+|.|..||-..|
T Consensus 7 ~~~~~~~i~~~~~~g~s~~~IA~~l 31 (51)
T 1tc3_C 7 SDTERAQLDVMKLLNVSLHEMSRKI 31 (51)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3566778888889999988886554
No 13
>2xv9_A ABA-1A1 repeat UNIT; lipid binding protein, fatty acid binding, retinol binding,; NMR {Ascaris suum}
Probab=49.05 E-value=21 Score=27.04 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc
Q 031438 42 IAILLRKLIRDEIQAGKTDKEVYKKLEDDFGE 73 (159)
Q Consensus 42 ~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd 73 (159)
+..+-+.+|.+|..+|+|+.+|..-+-+-|..
T Consensus 21 Lt~eQk~EI~kMk~~gksk~~v~~KI~efye~ 52 (134)
T 2xv9_A 21 LSQEQKDELLKMKKDGKAKKELEAKILHYYDE 52 (134)
T ss_dssp SCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999998877777754
No 14
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=48.11 E-value=7.3 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=22.5
Q ss_pred ccCCCCCCCCccccCcHHHHHHHHHHHHHHHcC-CChHHHH
Q 031438 25 VRCTDCGSQSIEDSQADIAILLRKLIRDEIQAG-KTDKEVY 64 (159)
Q Consensus 25 LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G-~Sd~eI~ 64 (159)
..|+.|-..-+.+..+..-..+...+++++..| .+.+||+
T Consensus 37 ~~C~~CGE~~~~~e~~~~~~~~~~~f~~~vd~~l~~~~~I~ 77 (78)
T 3ga8_A 37 LYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIV 77 (78)
T ss_dssp EEETTTCCEECCHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EECCCCCCEEECHHHHHHHHHHHHHHHHHHhccCCChHHhh
Confidence 468888555555555555566777788888877 5667775
No 15
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=47.67 E-value=14 Score=25.25 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHcC-----CChHHHHHHHHHh
Q 031438 41 DIAILLRKLIRDEIQAG-----KTDKEVYKKLEDD 70 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G-----~Sd~eI~~~~v~R 70 (159)
--+..++..|+++|.+- .||++|.+.|.+.
T Consensus 16 ~S~~~Ik~~Ik~lI~~Ed~~kPlSD~~I~~~L~~~ 50 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENEDKRKPYSDQEIANILKEK 50 (76)
T ss_dssp CCHHHHHHHHHHHGGGCCSSSCCCHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 35678999999999876 8999999999544
No 16
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=47.20 E-value=24 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 41 DIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
.+...+-..+..++.++.|.++|++++.. .-+.
T Consensus 7 ~~C~~~v~~~~~~l~~n~t~~~I~~~l~~-~C~~ 39 (83)
T 4ddj_A 7 DICKDVVTAAGDMLKDNATEEEILVYLEK-TCDW 39 (83)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHH-HHTT
T ss_pred hHHHHHHHHHHHHHHcCccHHHHHHHHHH-HHHh
Confidence 45567778999999999999999999965 4443
No 17
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=45.41 E-value=12 Score=26.64 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=18.9
Q ss_pred cCCChHHHHHHHHHhhcccccc
Q 031438 56 AGKTDKEVYKKLEDDFGETVLY 77 (159)
Q Consensus 56 ~G~Sd~eI~~~~v~RYGd~VL~ 77 (159)
-|.+-+.|+..+|+.||=.+|+
T Consensus 13 HGvtLE~ilt~Lv~~YGW~~L~ 34 (88)
T 2jvw_A 13 HGITLQKLLTELVEHYGWEELS 34 (88)
T ss_dssp SSCCHHHHHHHHHHHTCHHHHH
T ss_pred cchhHHHHHHHHHHHhCHHHHH
Confidence 4889999999999999966654
No 18
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=45.29 E-value=19 Score=25.83 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=20.2
Q ss_pred HHHHHHHHcCCC-----hHHHHHHHHHhhc
Q 031438 48 KLIRDEIQAGKT-----DKEVYKKLEDDFG 72 (159)
Q Consensus 48 ~~Ir~~l~~G~S-----d~eI~~~~v~RYG 72 (159)
..||++|++|.+ .+.|.+|+.++||
T Consensus 129 T~IR~~i~~g~~~~~~vP~~V~~yI~~~~~ 158 (158)
T 1qjc_A 129 SLVKEVARHQGDVTHFLPENVHQALMAKLA 158 (158)
T ss_dssp HHHHHHHHTTCCCGGGSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChhHhCCHHHHHHHHHhhC
Confidence 368888899976 5789999988875
No 19
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=44.03 E-value=28 Score=22.95 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=33.1
Q ss_pred HHHHHHhcccCCCCCCCCccccCc--HHHHHHHHHHHHHHH---cCCChHH---HHHHHHHhh
Q 031438 17 RARNISRNVRCTDCGSQSIEDSQA--DIAILLRKLIRDEIQ---AGKTDKE---VYKKLEDDF 71 (159)
Q Consensus 17 r~~~l~~~LRCpvCqnqsiadSna--~~A~dmR~~Ir~~l~---~G~Sd~e---I~~~~v~RY 71 (159)
.-.+|.. -.|..|=......-+. --.......|..|+. ...|++| |++||.+.|
T Consensus 20 ~G~~l~~-~~C~~CH~~~~i~~~p~~~~~~~W~~~v~~M~~~~g~~ls~~e~~~I~~YL~~~y 81 (81)
T 2blf_B 20 PGFEAAQ-NNCAACHSVDYINTQPPGKGQAFWDAEVQKMIKVYHAPVDEADAKAIADYLAKTY 81 (81)
T ss_dssp THHHHHH-HHTTSSSCTHHHHTSCTTCCHHHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHC
T ss_pred chHHHHH-HHHHHhcCCcccccCcCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 3455555 3699997654222211 134667778888884 2356665 788888776
No 20
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=43.42 E-value=21 Score=25.72 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.1
Q ss_pred HHHHHHHcCCC-----hHHHHHHHHHhhc
Q 031438 49 LIRDEIQAGKT-----DKEVYKKLEDDFG 72 (159)
Q Consensus 49 ~Ir~~l~~G~S-----d~eI~~~~v~RYG 72 (159)
.||+.|++|.+ .+.|.+|+.++|+
T Consensus 131 ~IR~~l~~G~~~~~~vP~~V~~~I~~~~~ 159 (160)
T 1od6_A 131 MVKEIARYGGDVSKLVPPATLRALKAKLG 159 (160)
T ss_dssp HHHHHHHTTCCCTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChhHHCCHHHHHHHHHHhc
Confidence 68888888876 6789999999885
No 21
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=42.43 E-value=33 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 031438 41 DIAILLRKLIRDEIQAGKTDKEVYKKLEDDF 71 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RY 71 (159)
.+..+-...|.+....|.|-+||..|+.-.-
T Consensus 10 ~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~ 40 (57)
T 1b0n_B 10 ELDQEWVELMVEAKEANISPEEIRKYLLLNK 40 (57)
T ss_dssp CCCHHHHHHHHHHHHTTCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3456677899999999999999999996543
No 22
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=41.58 E-value=28 Score=22.52 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 47 RKLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 47 R~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
-..|..++..|.|.+++++.|..-=||.
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnv 39 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNV 39 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 3699999999999999999999887774
No 23
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=39.71 E-value=38 Score=20.63 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCCCh-HHHHHHHHHhhccc
Q 031438 44 ILLRKLIRDEIQAGKTD-KEVYKKLEDDFGET 74 (159)
Q Consensus 44 ~dmR~~Ir~~l~~G~Sd-~eI~~~~v~RYGd~ 74 (159)
.....+|.++...|-++ +.++..|..-+||.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv 36 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSV 36 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCH
Confidence 34567899999999875 55899999999985
No 24
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=38.92 E-value=42 Score=22.35 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 031438 43 AILLRKLIRDEIQAGKTDKEVYKKLEDD 70 (159)
Q Consensus 43 A~dmR~~Ir~~l~~G~Sd~eI~~~~v~R 70 (159)
....|.+|...+ |.|+.||..||.+|
T Consensus 30 s~~er~eLA~~t--gLt~~qVkvWFqNR 55 (66)
T 3nau_A 30 DDAEVYRLIEVT--GLARSEIKKWFSDH 55 (66)
T ss_dssp CHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--CcCHHHhhHhcccc
Confidence 345677777777 99999999999886
No 25
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=38.88 E-value=47 Score=20.87 Aligned_cols=25 Identities=8% Similarity=0.279 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 031438 41 DIAILLRKLIRDEIQAGKTDKEVYKKLEDDF 71 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RY 71 (159)
.+-.+||++|..+ ++||++.+.+.+
T Consensus 15 EIL~E~RkElqK~------K~EIIeAi~~El 39 (45)
T 1use_A 15 ELLEEVKKELQKV------KEEIIEAFVQEL 39 (45)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3455666666655 789999988754
No 26
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=36.67 E-value=25 Score=26.44 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCC-----------ChHHHHHHHHHhhcccccccC
Q 031438 45 LLRKLIRDEIQAGK-----------TDKEVYKKLEDDFGETVLYAP 79 (159)
Q Consensus 45 dmR~~Ir~~l~~G~-----------Sd~eI~~~~v~RYGd~VL~~P 79 (159)
|++.+|.++|.+|+ ||.+++.|+-.+|....++.|
T Consensus 2 ~~~~~I~~Ll~~g~~eeAf~~aL~ssd~~lv~~lc~~~dp~~~~~~ 47 (139)
T 2vxg_A 2 AMGDSIKQLLMAGQINKAFHQALLANDLGLVEFTLRHTDSNQAFAP 47 (139)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHSCHHHHTC-
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHhCcHHHHHHHHHcCCHHHhcCC
Confidence 78999999999996 777888888899988865544
No 27
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=36.61 E-value=40 Score=21.43 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHcCCChHHHHHHHHHh
Q 031438 40 ADIAILLRKLIRDEIQAGKTDKEVYKKLEDD 70 (159)
Q Consensus 40 a~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~R 70 (159)
..+-+.+-..|..+|.++.|.++|++++-.-
T Consensus 5 C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~ 35 (80)
T 3bqp_A 5 CEVCKKLVGYLDRNLEKNSTKQEILAALEKG 35 (80)
T ss_dssp HHHHHHHHHHHHHHSCTTCCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3455667788999999999999999998654
No 28
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=36.17 E-value=51 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHhhcccc
Q 031438 45 LLRKLIRDEIQAGKTDKEVYKKLEDDFGETV 75 (159)
Q Consensus 45 dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~V 75 (159)
++..++.++|.+|.|.++|++++.+......
T Consensus 3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~ 33 (168)
T 3d3m_A 3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKL 33 (168)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCccc
Confidence 5778899999999999999999999877665
No 29
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=36.12 E-value=23 Score=24.74 Aligned_cols=27 Identities=7% Similarity=0.241 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 48 KLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 48 ~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
..|-+++....|-++|++.|.++|+.-
T Consensus 46 ~~Iw~l~DG~rtv~eIv~~L~~~y~~~ 72 (95)
T 3g2b_A 46 LVVAQRYDGTQSLAQIAQTLAAEFDAD 72 (95)
T ss_dssp HHHHHHCCSSSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHcCCc
Confidence 467788888999999999999999854
No 30
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=36.11 E-value=45 Score=21.04 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHh
Q 031438 45 LLRKLIRDEIQAGKTDKEVYKKLEDD 70 (159)
Q Consensus 45 dmR~~Ir~~l~~G~Sd~eI~~~~v~R 70 (159)
.+-..|..++.+|.|.+.++..|+--
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35678999999999999999988643
No 31
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=34.15 E-value=44 Score=21.64 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=23.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 49 LIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 49 ~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
.|..++..|.|.+++++.|..-=||.
T Consensus 12 ~I~~L~~lGF~r~~ai~AL~~a~nnv 37 (53)
T 2d9s_A 12 EIERLMSQGYSYQDIQKALVIAHNNI 37 (53)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCH
Confidence 39999999999999999999887774
No 32
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=33.84 E-value=61 Score=20.07 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHcCC-ChHHHHHHHHHhhccc
Q 031438 43 AILLRKLIRDEIQAGK-TDKEVYKKLEDDFGET 74 (159)
Q Consensus 43 A~dmR~~Ir~~l~~G~-Sd~eI~~~~v~RYGd~ 74 (159)
..+...+|..++..|- +.+.++..|..-+||.
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnv 40 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGDI 40 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCH
Confidence 4566788999999999 8888899999999973
No 33
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=33.46 E-value=63 Score=20.73 Aligned_cols=36 Identities=14% Similarity=-0.033 Sum_probs=29.1
Q ss_pred CcHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHhhccc
Q 031438 39 QADIAILLRKLIRDEIQAGKT-DKEVYKKLEDDFGET 74 (159)
Q Consensus 39 na~~A~dmR~~Ir~~l~~G~S-d~eI~~~~v~RYGd~ 74 (159)
+.|-......+|.++...|-+ ++.++..|..-+||.
T Consensus 10 ~~~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnv 46 (58)
T 1wr1_B 10 ILDPEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSV 46 (58)
T ss_dssp GGSHHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCH
T ss_pred CCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCH
Confidence 345566778899999999986 567799999999985
No 34
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=33.07 E-value=52 Score=25.46 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhc
Q 031438 42 IAILLRKLIRDEIQAGKTDKEVYKKLEDDFG 72 (159)
Q Consensus 42 ~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYG 72 (159)
.+.|.-+.|.++-.+|.|..||=-.|.+.||
T Consensus 29 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~G 59 (151)
T 3u5c_N 29 SSESVIEQIVKYARKGLTPSQIGVLLRDAHG 59 (151)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhccCC
Confidence 5788999999999999999999999999998
No 35
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.83 E-value=64 Score=19.65 Aligned_cols=28 Identities=11% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhcc
Q 031438 46 LRKLIRDEIQAGKTDKEVYKKLEDDFGE 73 (159)
Q Consensus 46 mR~~Ir~~l~~G~Sd~eI~~~~v~RYGd 73 (159)
....|..++..|-+.++++..|..-+||
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~~n 35 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASYNN 35 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 3456888999999999999999998886
No 36
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=32.42 E-value=55 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhc
Q 031438 42 IAILLRKLIRDEIQAGKTDKEVYKKLEDDFG 72 (159)
Q Consensus 42 ~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYG 72 (159)
.+.|.-+.|.++-.+|.|..||=-.|.+.||
T Consensus 31 ~~eeVe~~I~klakkG~tpSqIG~iLRD~~G 61 (153)
T 2xzm_O 31 TPSTVVDLSVKLAKKGLTPSQIGVILRDQHG 61 (153)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhhHHhhcCC
Confidence 4678899999999999999999999999999
No 37
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=32.33 E-value=49 Score=21.51 Aligned_cols=34 Identities=26% Similarity=0.575 Sum_probs=23.3
Q ss_pred ccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 031438 25 VRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 25 LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
.||..|.+- |. +.=++-.+++++|+++.+++|.|
T Consensus 4 VRCFTCGkv-i~--------~~we~y~~~~~~~~~~~~~LD~L 37 (55)
T 1ef4_A 4 VRCLSCGKP-VS--------AYFNEYQRRVADGEDPKDVLDDL 37 (55)
T ss_dssp SSCSCTTSC-CH--------HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred eecCCCCCC-hh--------HHHHHHHHHHHcCCCHHHHHHHc
Confidence 588888543 32 22334455788899999999876
No 38
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=32.27 E-value=67 Score=18.02 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcc
Q 031438 48 KLIRDEIQAGKTDKEVYKKLEDDFGE 73 (159)
Q Consensus 48 ~~Ir~~l~~G~Sd~eI~~~~v~RYGd 73 (159)
..|.+++..|-+.++.+..|..-.||
T Consensus 6 ~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 6 SKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 46888888899999999999988776
No 39
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.85 E-value=53 Score=25.56 Aligned_cols=31 Identities=16% Similarity=0.242 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhc
Q 031438 42 IAILLRKLIRDEIQAGKTDKEVYKKLEDDFG 72 (159)
Q Consensus 42 ~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYG 72 (159)
.+.+.-+.|.++-.+|.|..||=-.|.+.||
T Consensus 29 ~~eev~~~i~klakkG~~pSqIG~~LRD~~g 59 (158)
T 3j20_Q 29 TVEEIENLVVKLRKEGYSTAMIGTILRDQYG 59 (158)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCCCHHHhhHHHhccCC
Confidence 4788899999999999999999999999999
No 40
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.80 E-value=17 Score=26.53 Aligned_cols=16 Identities=38% Similarity=0.723 Sum_probs=12.4
Q ss_pred HhcccCCCCCCCCccc
Q 031438 22 SRNVRCTDCGSQSIED 37 (159)
Q Consensus 22 ~~~LRCpvCqnqsiad 37 (159)
...-|||.|..++|..
T Consensus 82 ~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 82 NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp SCCSSCSSSCCCCBCC
T ss_pred CCCCCCcCCCCCccCC
Confidence 4557899999998864
No 41
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.64 E-value=23 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhhcccccccC
Q 031438 44 ILLRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAP 79 (159)
Q Consensus 44 ~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~P 79 (159)
.++..++.++|++|.|+++|++|..+.-++...-.|
T Consensus 198 ~~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~ 233 (364)
T 3l6a_A 198 LKLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDK 233 (364)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCH
Confidence 589999999999999999999999999888766555
No 42
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.61 E-value=92 Score=25.54 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=12.2
Q ss_pred HHHHHhhcccccccCCCCch
Q 031438 65 KKLEDDFGETVLYAPKFDLQ 84 (159)
Q Consensus 65 ~~~v~RYGd~VL~~Pp~~~~ 84 (159)
.+++.-||==+-+-|..+..
T Consensus 293 T~IaGiyGMNf~~mPel~~~ 312 (339)
T 4ev6_A 293 MWITGIYGMNFSYLPLANNP 312 (339)
T ss_dssp HHHHHHTTCCCSCCTTSSCT
T ss_pred HHHHhhccCcCCCCCCccCc
Confidence 34567788656566766543
No 43
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=31.38 E-value=74 Score=20.54 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 031438 40 ADIAILLRKLIRDEIQAGKTDKEVYKKLEDDF 71 (159)
Q Consensus 40 a~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RY 71 (159)
..+-..+-..|..++.++.|.++|.+++..-=
T Consensus 7 C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C 38 (83)
T 2gtg_A 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMC 38 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35667788899999999999999999986533
No 44
>3lm3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.44A {Parabacteroides distasonis}
Probab=30.48 E-value=23 Score=31.26 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.4
Q ss_pred HHHHHHHH---HhhcccccccCCC
Q 031438 61 KEVYKKLE---DDFGETVLYAPKF 81 (159)
Q Consensus 61 ~eI~~~~v---~RYGd~VL~~Pp~ 81 (159)
.||++|++ +.|||.|-|-|-+
T Consensus 89 rqIr~Yv~~c~~kyGDEV~~~pGY 112 (449)
T 3lm3_A 89 REIRDYVVECQKKYGDEVTYFPGY 112 (449)
T ss_dssp HHHHHHHHHHHHHHCCEEEECCCS
T ss_pred HHHHHHHHHHHHHhCCceeecCCC
Confidence 68888888 6999999999974
No 45
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=29.09 E-value=37 Score=19.79 Aligned_cols=8 Identities=25% Similarity=0.189 Sum_probs=4.1
Q ss_pred HHHHHHHH
Q 031438 89 WLSPLLVA 96 (159)
Q Consensus 89 W~~P~l~~ 96 (159)
.++|++++
T Consensus 5 ~~l~~v~~ 12 (37)
T 2rdd_B 5 LILMLVVF 12 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34566544
No 46
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=28.99 E-value=36 Score=25.79 Aligned_cols=17 Identities=18% Similarity=0.542 Sum_probs=13.0
Q ss_pred HHHHHHcCCChHHHHHHH
Q 031438 50 IRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 50 Ir~~l~~G~Sd~eI~~~~ 67 (159)
|..|| .|+|.+||+.+|
T Consensus 129 vA~~i-kgktpeeiR~~f 145 (169)
T 3v7d_A 129 VAEMI-RGRSPEEIRRTF 145 (169)
T ss_dssp HHHHH-TTCCHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHc
Confidence 44444 599999999876
No 47
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=28.95 E-value=56 Score=21.66 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHH
Q 031438 41 DIAILLRKLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
++-.-+-.++.++| ...|.++|++++
T Consensus 5 ~~C~~~v~~le~~l-~n~Te~~I~~~L 30 (74)
T 1l9l_A 5 RTCLTIVQKLKKMV-DKPTQRSVSNAA 30 (74)
T ss_dssp HHHHHHHHHHHHHC-SSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHh-cccCHHHHHHHH
Confidence 45566778899999 999999999987
No 48
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=28.68 E-value=41 Score=20.85 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCC-ChHHHHHHHHHhhccc
Q 031438 44 ILLRKLIRDEIQAGK-TDKEVYKKLEDDFGET 74 (159)
Q Consensus 44 ~dmR~~Ir~~l~~G~-Sd~eI~~~~v~RYGd~ 74 (159)
.+....|.+++..|- +.+.++..|..-+||.
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~ 41 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIATGGDI 41 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCH
Confidence 344668899999999 8888899999999973
No 49
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=28.53 E-value=69 Score=20.94 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHH
Q 031438 41 DIAILLRKLIRDEIQAGKTDKEVYKKLE 68 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v 68 (159)
.+-..+-..+.+++.++.|.++|.++|-
T Consensus 5 ~~C~~iv~~ve~~l~~~~t~~~I~~~l~ 32 (78)
T 1nkl_A 5 ESCRKIIQKLEDMVGPQPNEDTVTQAAS 32 (78)
T ss_dssp HHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4556777889999999999999999984
No 50
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=28.27 E-value=12 Score=32.71 Aligned_cols=20 Identities=15% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031438 90 LSPLLVAGAAAGIWAYNRHR 109 (159)
Q Consensus 90 ~~P~l~~~~~~~~~~~~rrr 109 (159)
.+|.++++++++-++++|||
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~ 457 (458)
T 3qho_A 438 CGPAILIILAVFSLLLRRAP 457 (458)
T ss_dssp --------------------
T ss_pred eHHHHHHHHHHHHHHHHhcc
Confidence 56777666665544444443
No 51
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.01 E-value=62 Score=21.76 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 46 LRKLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 46 mR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
....|.+++..|.+.++++..|..-+||.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~~nv 57 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAADDDL 57 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHTSCH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhCCCH
Confidence 34568889999999999999999988863
No 52
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=27.36 E-value=23 Score=24.97 Aligned_cols=33 Identities=6% Similarity=0.152 Sum_probs=28.1
Q ss_pred ccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 031438 37 DSQADIAILLRKLIRDEIQAGKTDKEVYKKLED 69 (159)
Q Consensus 37 dSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~ 69 (159)
+...++.+-+-..|..+|.+.+|+++|++|+-.
T Consensus 70 ~~~C~~Ce~~V~~ie~~L~~N~Te~eI~~~l~k 102 (108)
T 3rfi_A 70 APLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQ 102 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred CCcChhHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 334577788889999999999999999999864
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.12 E-value=35 Score=23.62 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=8.9
Q ss_pred cccCCCCCCCCccc
Q 031438 24 NVRCTDCGSQSIED 37 (159)
Q Consensus 24 ~LRCpvCqnqsiad 37 (159)
.-.||+| |+.|.+
T Consensus 47 g~~CPvC-gs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVC-GRELTD 59 (112)
T ss_dssp SEECTTT-CCEECH
T ss_pred CCCCCCC-CCcCCH
Confidence 4579999 555554
No 54
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=25.51 E-value=61 Score=21.75 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 031438 48 KLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 48 ~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
.+|..++.+|+|..||-+.|
T Consensus 35 ~~Vl~l~~~G~s~~eIA~~L 54 (90)
T 3ulq_B 35 CLILQEVEKGFTNQEIADAL 54 (90)
T ss_dssp HHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 46777788999999997765
No 55
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=24.94 E-value=83 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHhhcccccccCCC
Q 031438 40 ADIAILLRKLIRDEIQAGKT--DKEVYKKLEDDFGETVLYAPKF 81 (159)
Q Consensus 40 a~~A~dmR~~Ir~~l~~G~S--d~eI~~~~v~RYGd~VL~~Pp~ 81 (159)
++++.+|++..-..+..|.. ..+|.+||.+-|..|.+++.+-
T Consensus 157 ~DltGEL~R~avn~v~~Gd~~~~~~i~~fm~~Ly~~f~~Lnl~n 200 (240)
T 1j1j_A 157 LILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKN 200 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHHhcCCCC
Confidence 37899999999999998876 4789999999999999999764
No 56
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=72 Score=21.67 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=18.8
Q ss_pred HcCCChHHHHHHHHHhhccccc
Q 031438 55 QAGKTDKEVYKKLEDDFGETVL 76 (159)
Q Consensus 55 ~~G~Sd~eI~~~~v~RYGd~VL 76 (159)
+.++|-+||+++|.+|-++-.-
T Consensus 42 kskms~qqvkdwFa~k~~E~t~ 63 (70)
T 2ys9_A 42 ASRLSTQQVLDWFDSRLPQPAE 63 (70)
T ss_dssp HTTCCHHHHHHHHHHHSCCSSC
T ss_pred HhCCCHHHHHHHHHhcccccce
Confidence 6789999999999999887543
No 57
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=24.32 E-value=41 Score=24.50 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=13.5
Q ss_pred HHHHHHHcCCChHHHHHHH
Q 031438 49 LIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 49 ~Ir~~l~~G~Sd~eI~~~~ 67 (159)
.|..|| .|||.+||+.+|
T Consensus 116 ~vA~~i-kgkt~eeiR~~f 133 (141)
T 1fs1_B 116 TVANMI-KGKTPEEIRKTF 133 (141)
T ss_dssp HHHHHH-TTCCHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHc
Confidence 444555 589999999876
No 58
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.20 E-value=94 Score=18.01 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhhcc
Q 031438 48 KLIRDEIQAGKTDKEVYKKLEDDFGE 73 (159)
Q Consensus 48 ~~Ir~~l~~G~Sd~eI~~~~v~RYGd 73 (159)
..|.+++..|-+.++.+..|..-.||
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~~~n 31 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcC
Confidence 45888999999999999999988775
No 59
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=24.19 E-value=40 Score=23.58 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=16.0
Q ss_pred cCCCCCCCCc-----------cccCcHHHHHHH
Q 031438 26 RCTDCGSQSI-----------EDSQADIAILLR 47 (159)
Q Consensus 26 RCpvCqnqsi-----------adSna~~A~dmR 47 (159)
.||.|.+.++ ...+|.+|+.|+
T Consensus 37 ~CPnCgs~~~T~~w~G~ViI~dPe~S~IAk~l~ 69 (81)
T 3p8b_A 37 RCPVCGSRDLSEEWFDLVIIVDVENSEIAKKIG 69 (81)
T ss_dssp SCTTTCCCCEESCEEEEEEESCTTTCHHHHHHT
T ss_pred CCCCCCCCccCCccceEEEEeCChHhHHHHHhC
Confidence 6999998873 335677887765
No 60
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=24.11 E-value=21 Score=20.05 Aligned_cols=15 Identities=0% Similarity=0.016 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHH
Q 031438 41 DIAILLRKLIRDEIQ 55 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~ 55 (159)
|.+.|||+++..++.
T Consensus 1 P~~e~mr~Q~~~lve 15 (26)
T 1oeg_A 1 PLVEDMQRQWAGLVE 15 (26)
T ss_dssp CHHHHTTTHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 578899988877664
No 61
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=23.91 E-value=45 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=16.5
Q ss_pred cccCCCCCCCCccccCcHHHHHHHHHHHHHHH
Q 031438 24 NVRCTDCGSQSIEDSQADIAILLRKLIRDEIQ 55 (159)
Q Consensus 24 ~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~ 55 (159)
.+.|+.|... + +.+-|+..|...||+.|.
T Consensus 49 g~~C~~C~~~-~--~~~~i~nQl~l~iR~~i~ 77 (206)
T 3flo_B 49 GLQCKHCEQL-F--TPLQLTSQIEHSIRAHIS 77 (206)
T ss_dssp EEEETTTCCB-C--CHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCc-C--CHHHHHHHHHHHHHHHHH
Confidence 4555555442 2 345677777777766554
No 62
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=23.76 E-value=67 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.1
Q ss_pred HHHHHHHcCCC-----hHHHHHHHHHhhcc
Q 031438 49 LIRDEIQAGKT-----DKEVYKKLEDDFGE 73 (159)
Q Consensus 49 ~Ir~~l~~G~S-----d~eI~~~~v~RYGd 73 (159)
.||+.+..|.+ .+.|.+|+.++|.+
T Consensus 141 ~IR~~i~~g~~i~~lvP~~V~~yI~~~~~~ 170 (173)
T 1vlh_A 141 LVKEVALYGGDVTEWVPPEVARALNEKLKE 170 (173)
T ss_dssp HHHHHHHTTCCCTTTSCHHHHHHHHHHTC-
T ss_pred HHHHHHHcCCChhHcCCHHHHHHHHHHHhc
Confidence 56777777765 67999999999875
No 63
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=23.73 E-value=82 Score=21.83 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=23.6
Q ss_pred cccCCCCCCCCccccCcHHHHHHHHHHHHHHHcC-CChHHHHHHHHHhhc
Q 031438 24 NVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAG-KTDKEVYKKLEDDFG 72 (159)
Q Consensus 24 ~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G-~Sd~eI~~~~v~RYG 72 (159)
-..|+.|...-+..-............+..+..| .+-++|. .+...+|
T Consensus 36 ~~~C~~CGE~~~d~e~~~~~~~~~~e~~r~~~~~~~~~~~l~-~~R~~~g 84 (133)
T 3o9x_A 36 GLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIV-KVRKKLS 84 (133)
T ss_dssp EEEESSSSCEECCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH-HHHHHTT
T ss_pred eeECCCCCCEeecHHHHHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHcC
Confidence 4578888554443333333344445555556534 3444443 3344444
No 64
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.49 E-value=26 Score=21.22 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=9.7
Q ss_pred cccCCCCCCCC-cccc
Q 031438 24 NVRCTDCGSQS-IEDS 38 (159)
Q Consensus 24 ~LRCpvCqnqs-iadS 38 (159)
.+.||.|.+.. +.|.
T Consensus 5 ~~~CP~C~~~~l~~d~ 20 (50)
T 1pft_A 5 QKVCPACESAELIYDP 20 (50)
T ss_dssp CCSCTTTSCCCEEEET
T ss_pred cEeCcCCCCcceEEcC
Confidence 57899998733 3443
No 65
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=23.29 E-value=50 Score=23.76 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=15.4
Q ss_pred HHHHHHHcCCChHHHHHHH
Q 031438 49 LIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 49 ~Ir~~l~~G~Sd~eI~~~~ 67 (159)
.|-+.++.|.|.+||.+.|
T Consensus 56 ~Il~~l~~G~s~eeIl~~y 74 (106)
T 2ga1_A 56 TLVAYRQQGAPDKELLANY 74 (106)
T ss_dssp HHHHHHHTTCCHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHC
Confidence 3457899999999998754
No 66
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.24 E-value=1.2e+02 Score=17.63 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHH
Q 031438 45 LLRKLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 45 dmR~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
+....|..+..+|.|..||-+.|
T Consensus 19 ~~~~~i~~l~~~g~s~~eIA~~l 41 (55)
T 2x48_A 19 DLVSVAHELAKMGYTVQQIANAL 41 (55)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 44567777888999999986543
No 67
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=23.23 E-value=73 Score=21.42 Aligned_cols=34 Identities=32% Similarity=0.542 Sum_probs=23.8
Q ss_pred ccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHH
Q 031438 25 VRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 25 LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
.||-.|.+- | |. .=+.-.+++++|+++.+++|.|
T Consensus 5 VRCFTCGkv-i-------~~-k~~~y~~~~~~~~~~g~~LD~L 38 (66)
T 4ayb_N 5 IRCFTCGSL-I-------AD-KWQPFITRVNAGENPGKVLDDL 38 (66)
T ss_dssp SBCTTTCCB-C-------HH-HHHHHHHHHHTTCCHHHHHHHS
T ss_pred cccCCCcHh-H-------HH-HHHHHHHHHhcCCCHHHHHHHh
Confidence 578888543 3 33 3344567889999999999875
No 68
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.51 E-value=84 Score=21.22 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCC-hHHHHHHHHHhhccc
Q 031438 42 IAILLRKLIRDEIQAGKT-DKEVYKKLEDDFGET 74 (159)
Q Consensus 42 ~A~dmR~~Ir~~l~~G~S-d~eI~~~~v~RYGd~ 74 (159)
-......+|.+++..|-+ ++.++..|..-+||.
T Consensus 25 pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnv 58 (74)
T 1vej_A 25 TEGRYQQELEELKALGFANRDANLQALVATDGDI 58 (74)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCH
T ss_pred chHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCH
Confidence 345567889999999985 688899999999985
No 69
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ...
Probab=22.51 E-value=24 Score=30.68 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=30.4
Q ss_pred hcccCCCCCCCCccc------cC------------cHHHHHHHHHHHHHHHcCCChHHHHHHHHHhh
Q 031438 23 RNVRCTDCGSQSIED------SQ------------ADIAILLRKLIRDEIQAGKTDKEVYKKLEDDF 71 (159)
Q Consensus 23 ~~LRCpvCqnqsiad------Sn------------a~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RY 71 (159)
..=-|++|+|-|=+. ++ --.-..+-+.||+.|.+|.=.+-+.+|+...|
T Consensus 316 ~~C~C~tC~~ysRAYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR~aI~~g~f~e~~~~f~~~~~ 382 (386)
T 3bld_A 316 SECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF 382 (386)
T ss_dssp SSCCSHHHHHCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred CCCCCccccccCHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345688998865432 22 23345566889999999975555555444443
No 70
>1xkp_A Putative membrane-bound YOP targeting protein YOP; YOPN, type III secretion, SYCN, membrane PR chaperon complex; HET: MLY; 1.70A {Yersinia pestis} SCOP: a.243.1.3 PDB: 1xl3_A*
Probab=22.34 E-value=1.1e+02 Score=24.93 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 42 IAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 42 ~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
-+..||..-|+-|..=.|-.++++.+++|||..
T Consensus 163 s~~~LR~lYr~~v~~~~s~~~~~~~~~~~yg~~ 195 (246)
T 1xkp_A 163 PLQPLRDTYRDAVMGYQGIYAIWSDLQXRFPNG 195 (246)
T ss_dssp CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHhccccHHHHHHHHHHHhCch
Confidence 467789999999999999999999999999975
No 71
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=22.28 E-value=1.2e+02 Score=18.48 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=11.8
Q ss_pred HHHHhcccCCCCCCCCc
Q 031438 19 RNISRNVRCTDCGSQSI 35 (159)
Q Consensus 19 ~~l~~~LRCpvCqnqsi 35 (159)
++|..+..|..|=+.+-
T Consensus 4 ~~l~~~~~C~~CHg~~g 20 (82)
T 1cch_A 4 EALFKSKPCAACHSVDT 20 (82)
T ss_dssp HHHHHHSTHHHHSCSSS
T ss_pred HHHHHhCCChhhcCCCC
Confidence 45666667999987653
No 72
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=22.05 E-value=80 Score=23.17 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=17.0
Q ss_pred HHHHHHHcCCC-----hHHHHHHHHHh
Q 031438 49 LIRDEIQAGKT-----DKEVYKKLEDD 70 (159)
Q Consensus 49 ~Ir~~l~~G~S-----d~eI~~~~v~R 70 (159)
.||+.|++|.+ .+.|.+|+.++
T Consensus 158 ~IR~~l~~g~~~~~lvP~~V~~yI~~~ 184 (189)
T 2qtr_A 158 LLRERYKEKKTCKYLLPEKVQVYIERN 184 (189)
T ss_dssp HHHHHHHTTCCCTTTSCHHHHHHHHHT
T ss_pred HHHHHHHcCCCchhcCCHHHHHHHHHc
Confidence 68888888876 55788888765
No 73
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=21.90 E-value=72 Score=20.85 Aligned_cols=34 Identities=6% Similarity=0.116 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcccc
Q 031438 40 ADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGETV 75 (159)
Q Consensus 40 a~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~V 75 (159)
.++-..+-..|.+++..+ |.++|.+++- +.-++.
T Consensus 5 C~~C~~vv~~ve~~l~~n-t~~~I~~~l~-~~C~~l 38 (77)
T 1of9_A 5 CNLCTGLINTLENLLTTK-GADKVKDYIS-SLCNKA 38 (77)
T ss_dssp HHHHHHHHHHHHHHCSSS-CSHHHHHHHH-HHHTTC
T ss_pred chhHHHHHHHHHHHHHHC-cHHHHHHHHH-HHHHcC
Confidence 456677888999999999 9999999885 455553
No 74
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.87 E-value=28 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=11.3
Q ss_pred HhcccCCCCCC-CCcccc
Q 031438 22 SRNVRCTDCGS-QSIEDS 38 (159)
Q Consensus 22 ~~~LRCpvCqn-qsiadS 38 (159)
-..+.||.|.+ +-+.|.
T Consensus 9 l~~~~Cp~C~~~~lv~D~ 26 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDY 26 (58)
T ss_dssp CSCCSBTTBSSSCCEECS
T ss_pred cccccCcCCCCCceeEeC
Confidence 34578999988 444443
No 75
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=21.82 E-value=86 Score=25.61 Aligned_cols=19 Identities=16% Similarity=-0.029 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 031438 84 QTAALWLSPLLVAGAAAGI 102 (159)
Q Consensus 84 ~t~lLW~~P~l~~~~~~~~ 102 (159)
.-|+=|++|++-..+++++
T Consensus 232 ~~WVy~vgPi~Ga~la~~~ 250 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFA 250 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHHHHH
Confidence 4688899998744333333
No 76
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=21.77 E-value=68 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHH
Q 031438 43 AILLRKLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 43 A~dmR~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
+-.-|-+|.++|.+|+|-.||-+-+
T Consensus 61 aLs~R~eV~klL~~G~syreIA~~~ 85 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQES 85 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566799999999999999997753
No 77
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.60 E-value=98 Score=20.60 Aligned_cols=36 Identities=14% Similarity=0.031 Sum_probs=29.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCChH-HHHHHHHHhhccc
Q 031438 39 QADIAILLRKLIRDEIQAGKTDK-EVYKKLEDDFGET 74 (159)
Q Consensus 39 na~~A~dmR~~Ir~~l~~G~Sd~-eI~~~~v~RYGd~ 74 (159)
+.|-......+|..+...|-+|. .++..|..-+||.
T Consensus 12 ~~~pe~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnv 48 (67)
T 2dna_A 12 LQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDT 48 (67)
T ss_dssp SCCHHHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCH
T ss_pred CCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCH
Confidence 33556777889999999997666 5599999999985
No 78
>3fm3_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2, protein structure initiative; 2.18A {Encephalitozoon cuniculi} PDB: 3fmq_A* 3fmr_A*
Probab=21.49 E-value=47 Score=27.96 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHHHHcCCChHHHHH
Q 031438 40 ADIAILLRKLIRDEIQAGKTDKEVYK 65 (159)
Q Consensus 40 a~~A~dmR~~Ir~~l~~G~Sd~eI~~ 65 (159)
+.++.+.++.+.++|+-|.|..||-+
T Consensus 52 a~I~~~v~~~~~~~ikpG~t~~el~~ 77 (358)
T 3fm3_A 52 AEAHRRARYRVQSIVRPGITLLEIVR 77 (358)
T ss_dssp HHHHHHHHHHHHHHCCTTCBHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHH
Confidence 36888899999999999999988843
No 79
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.41 E-value=98 Score=19.38 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCChHH-HHHHHHHhhccc
Q 031438 46 LRKLIRDEIQAGKTDKE-VYKKLEDDFGET 74 (159)
Q Consensus 46 mR~~Ir~~l~~G~Sd~e-I~~~~v~RYGd~ 74 (159)
...+|.++...|-++++ ++..|..-.||.
T Consensus 9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv 38 (54)
T 2dah_A 9 FQVQLEQLRSMGFLNREANLQALIATGGDV 38 (54)
T ss_dssp SHHHHHHHHHHTCCCHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHcCCCH
Confidence 35578888888998876 699999999985
No 80
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=21.35 E-value=62 Score=19.16 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 031438 48 KLIRDEIQAGKTDKEVYKKL 67 (159)
Q Consensus 48 ~~Ir~~l~~G~Sd~eI~~~~ 67 (159)
.+|..++.+|+|..||-+.|
T Consensus 4 ~~vl~l~~~g~s~~eIA~~l 23 (61)
T 2jpc_A 4 RQVLKLIDEGYTNHGISEKL 23 (61)
T ss_dssp HHHHHHHHTSCCSHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHh
Confidence 34556688999999887654
No 81
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=21.33 E-value=68 Score=23.96 Aligned_cols=29 Identities=21% Similarity=0.092 Sum_probs=24.3
Q ss_pred cccCcHHHHHHHHHHHHHHHcCCChHHHHH
Q 031438 36 EDSQADIAILLRKLIRDEIQAGKTDKEVYK 65 (159)
Q Consensus 36 adSna~~A~dmR~~Ir~~l~~G~Sd~eI~~ 65 (159)
+||+|.+.+-+-..+.+. -+|+|.+||.+
T Consensus 74 adSDA~IvkGl~alL~~~-~~G~tp~eIl~ 102 (141)
T 3g0m_A 74 GDSDAAIVKGLMAVVFIL-YHQMTAQDIVH 102 (141)
T ss_dssp EEESSHHHHHHHHHHHHH-HTTCBHHHHHH
T ss_pred ecCccHHHHHHHHHHHHH-HcCCCHHHHHh
Confidence 679999998888877654 57999999996
No 82
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima}
Probab=21.33 E-value=23 Score=30.92 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=31.1
Q ss_pred hcccCCCCCCCCcc------ccC------------cHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhcc
Q 031438 23 RNVRCTDCGSQSIE------DSQ------------ADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGE 73 (159)
Q Consensus 23 ~~LRCpvCqnqsia------dSn------------a~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd 73 (159)
..=-|++|+|-|-+ .++ --.-..+-+.||+.|.+|.=.+-+.+|+...|.+
T Consensus 309 ~~C~C~tC~~ysRAYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR~aI~~g~f~e~~~~f~~~~~~~ 377 (381)
T 2ash_A 309 ERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVVEVYSSG 377 (381)
T ss_dssp TTCCSHHHHHCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTC--
T ss_pred CCCCCccCcccCHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34568899886533 222 2334556788999999998665555555554443
No 83
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=21.14 E-value=1.1e+02 Score=24.86 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHcCCC--hHHHHHHHHHhhcccccccCCC
Q 031438 41 DIAILLRKLIRDEIQAGKT--DKEVYKKLEDDFGETVLYAPKF 81 (159)
Q Consensus 41 ~~A~dmR~~Ir~~l~~G~S--d~eI~~~~v~RYGd~VL~~Pp~ 81 (159)
+++.+|++..-..+..|.. ..+|.+||.+-|..|.+++.+-
T Consensus 161 DLtGEL~R~ain~v~~Gd~~~~~~i~~fm~~Ly~~f~~Ln~~n 203 (249)
T 3axj_A 161 QLASELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKN 203 (249)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6888999999999988876 4789999999999999999775
No 84
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A*
Probab=21.04 E-value=73 Score=24.89 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.7
Q ss_pred HHHHHHH-HHHcCC--ChHHHHHHHHHhhccc
Q 031438 46 LRKLIRD-EIQAGK--TDKEVYKKLEDDFGET 74 (159)
Q Consensus 46 mR~~Ir~-~l~~G~--Sd~eI~~~~v~RYGd~ 74 (159)
+++.+.+ .+++|+ +-++++..|...|++.
T Consensus 243 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~y~~~ 274 (303)
T 2vw8_A 243 CLRLCRRLLWRQSMGESLDELSEELHRAWGGQ 274 (303)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHhcCC
Confidence 5555656 788888 7888888999999764
No 85
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.99 E-value=2e+02 Score=19.97 Aligned_cols=63 Identities=6% Similarity=-0.099 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHhcccCCCCCCCCccccCcHHHHHHHHHHHHHHHc--------CCChHHHHHHHHHhhcc
Q 031438 11 KQMADARARNISRNVRCTDCGSQSIEDSQADIAILLRKLIRDEIQA--------GKTDKEVYKKLEDDFGE 73 (159)
Q Consensus 11 d~~~e~r~~~l~~~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~--------G~Sd~eI~~~~v~RYGd 73 (159)
+++..++++++.++-...+-...+-....+|.+...++.+.+.=.. =..+.++.++|.+..|-
T Consensus 2 ~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~ 72 (121)
T 3gx8_A 2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW 72 (121)
T ss_dssp CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC
Confidence 3566778888888877777766666666788888888888775111 12367899999998874
No 86
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=20.91 E-value=70 Score=26.43 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=23.7
Q ss_pred cccCCCCCCCCccccCcHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhccc
Q 031438 24 NVRCTDCGSQSIEDSQADIAILLRKLIRDEIQAGKTDKEVYKKLEDDFGET 74 (159)
Q Consensus 24 ~LRCpvCqnqsiadSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~ 74 (159)
.--||.|.+++-. ..--++++|+.||...||..
T Consensus 221 ~~~Cp~C~~~~~~------------------~~~W~~~~Vl~fLk~~y~~~ 253 (261)
T 3llk_A 221 RELCSACHNERLD------------------VPVWDVEATLNFLKAHFSPS 253 (261)
T ss_dssp TTTCSTTBCCCSS------------------SCSBCHHHHHHHHHHHTSGG
T ss_pred chhChHHHhccCC------------------CCCCCHHHHHHHHHHHcCcc
Confidence 3469999977511 12245899999999999864
No 87
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.76 E-value=1.7e+02 Score=18.46 Aligned_cols=33 Identities=15% Similarity=-0.009 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHhhcccccccCC
Q 031438 46 LRKLIRDEIQAGKTDKEVYKKLEDDFGETVLYAPK 80 (159)
Q Consensus 46 mR~~Ir~~l~~G~Sd~eI~~~~v~RYGd~VL~~Pp 80 (159)
.|.+|...+ |.++.+|.-||..|---.+...||
T Consensus 32 ~r~~LA~~l--~L~e~qVqvWFqNRRak~~~~~~~ 64 (64)
T 2e19_A 32 ELSKIADSV--NLPLDVVKKWFEKMQAGQISVQSS 64 (64)
T ss_dssp HHHHHHHHH--TCCHHHHHHHHHHHHHTCSCSSCC
T ss_pred HHHHHHHHh--CcChhhcCcchhcccCCCCCCCCC
Confidence 355666554 899999999999886666555543
No 88
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=20.65 E-value=94 Score=21.43 Aligned_cols=20 Identities=5% Similarity=-0.268 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031438 87 ALWLSPLLVAGAAAGIWAYN 106 (159)
Q Consensus 87 lLW~~P~l~~~~~~~~~~~~ 106 (159)
++|.+++++++++++.|+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v 183 (186)
T 2kse_A 164 QLIPWLVALPIMLIIMMVLL 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444333333334333
No 89
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=20.64 E-value=90 Score=20.40 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHh
Q 031438 46 LRKLIRDEIQAGKTDKEVYKKLEDD 70 (159)
Q Consensus 46 mR~~Ir~~l~~G~Sd~eI~~~~v~R 70 (159)
.-.+|..++.+|.|.+.++..|..-
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia 31 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIA 31 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3458999999999999999988754
No 90
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.40 E-value=34 Score=21.86 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=10.1
Q ss_pred HHhcccCCCCCCC
Q 031438 21 ISRNVRCTDCGSQ 33 (159)
Q Consensus 21 l~~~LRCpvCqnq 33 (159)
+-.-|.||+|.+.
T Consensus 7 lL~iL~CP~c~~~ 19 (56)
T 2kpi_A 7 LLEILACPACHAP 19 (56)
T ss_dssp CTTSCCCSSSCSC
T ss_pred HHhheeCCCCCCc
Confidence 3456899999885
No 91
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=20.37 E-value=67 Score=24.49 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=31.8
Q ss_pred cccCcHHHHHHHHHHHHHHHcCCChHHHHHH----HHHhhcccccccC
Q 031438 36 EDSQADIAILLRKLIRDEIQAGKTDKEVYKK----LEDDFGETVLYAP 79 (159)
Q Consensus 36 adSna~~A~dmR~~Ir~~l~~G~Sd~eI~~~----~v~RYGd~VL~~P 79 (159)
+||+|.+.+-+-..+.+. -+|+|.+||.++ |.++-|=.-.+.|
T Consensus 81 adSDA~IvkGL~AlL~~~-~~G~tp~eIl~~d~~~f~~~lGL~~~LSp 127 (155)
T 1ni7_A 81 GDSEGRIVRGLLAVLLTA-VEGKTAAELQAQSPLALFDELGLRAQLSA 127 (155)
T ss_dssp EEESSHHHHHHHHHHHHH-TTTCCHHHHHHSCTHHHHHHHTSSSSSCH
T ss_pred eCCccHHHHHHHHHHHHH-HcCCCHHHHHhCCHHHHHHHcCchhhcCc
Confidence 789999999988877654 589999999975 5666663333333
Done!