Query 031440
Match_columns 159
No_of_seqs 114 out of 1134
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10293 acyl-CoA esterase; Pr 100.0 2E-27 4.2E-32 174.1 16.6 117 33-154 18-136 (136)
2 KOG3328 HGG motif-containing t 100.0 1.3E-27 2.8E-32 174.4 13.3 124 34-159 21-145 (148)
3 PRK10254 thioesterase; Provisi 100.0 1.4E-26 3.1E-31 169.7 17.6 119 31-154 16-136 (137)
4 PLN02322 acyl-CoA thioesterase 99.9 7.9E-26 1.7E-30 168.4 16.9 119 33-154 10-134 (154)
5 TIGR02286 PaaD phenylacetic ac 99.9 1.5E-25 3.3E-30 158.8 16.6 111 41-153 3-113 (114)
6 TIGR00369 unchar_dom_1 unchara 99.9 9.8E-26 2.1E-30 160.2 15.6 111 41-153 5-117 (117)
7 PRK11688 hypothetical protein; 99.9 6.7E-26 1.4E-30 168.9 15.3 117 32-153 20-153 (154)
8 COG2050 PaaI HGG motif-contain 99.9 7.8E-25 1.7E-29 160.7 16.0 122 32-157 17-140 (141)
9 cd03443 PaaI_thioesterase PaaI 99.9 1.9E-20 4.1E-25 130.7 16.0 108 43-152 3-112 (113)
10 TIGR02447 yiiD_Cterm thioester 99.8 2E-19 4.3E-24 131.9 15.6 116 32-155 5-138 (138)
11 COG1607 Acyl-CoA hydrolase [Li 99.8 1.4E-17 3.1E-22 124.0 15.4 107 50-156 10-121 (157)
12 PRK10694 acyl-CoA esterase; Pr 99.8 1.9E-17 4E-22 120.8 15.5 106 50-155 8-121 (133)
13 cd03442 BFIT_BACH Brown fat-in 99.8 3.1E-17 6.8E-22 115.8 16.0 106 50-155 4-114 (123)
14 PF03061 4HBT: Thioesterase su 99.7 8.9E-16 1.9E-20 100.4 11.6 77 68-145 1-79 (79)
15 PF14539 DUF4442: Domain of un 99.6 8.3E-15 1.8E-19 106.6 13.4 115 33-153 13-132 (132)
16 cd00556 Thioesterase_II Thioes 99.6 1.5E-14 3.3E-19 98.6 11.7 84 68-152 14-98 (99)
17 PRK04424 fatty acid biosynthes 99.5 2.3E-12 5E-17 98.8 16.7 104 45-153 76-181 (185)
18 cd00586 4HBT 4-hydroxybenzoyl- 99.5 3.1E-12 6.7E-17 87.0 14.0 97 56-153 3-108 (110)
19 PLN02647 acyl-CoA thioesterase 99.4 4.3E-12 9.3E-17 108.4 15.6 112 45-156 79-211 (437)
20 PLN02647 acyl-CoA thioesterase 99.4 5.6E-12 1.2E-16 107.7 15.1 108 49-156 286-403 (437)
21 COG4109 Predicted transcriptio 99.3 1.3E-11 2.7E-16 101.9 8.8 116 33-153 315-430 (432)
22 cd03440 hot_dog The hotdog fol 99.3 4.2E-10 9.2E-15 72.2 13.9 95 56-151 3-99 (100)
23 KOG4781 Uncharacterized conser 99.2 6E-11 1.3E-15 92.6 9.6 96 43-138 116-212 (237)
24 PRK10800 acyl-CoA thioesterase 99.0 5.2E-08 1.1E-12 69.9 15.3 100 55-155 4-112 (130)
25 TIGR02799 thio_ybgC tol-pal sy 98.9 6.5E-08 1.4E-12 68.5 13.8 97 56-154 3-109 (126)
26 cd03445 Thioesterase_II_repeat 98.9 7.4E-08 1.6E-12 66.1 12.7 80 67-152 14-93 (94)
27 PF13622 4HBT_3: Thioesterase- 98.9 5.4E-08 1.2E-12 77.1 13.1 83 68-156 9-91 (255)
28 PF09500 YiiD_Cterm: Putative 98.9 1.4E-07 3E-12 69.7 14.2 109 41-154 17-143 (144)
29 TIGR00051 acyl-CoA thioester h 98.8 2E-07 4.3E-12 64.8 13.4 96 58-154 2-107 (117)
30 cd03449 R_hydratase (R)-hydrat 98.8 1.4E-07 3E-12 66.9 12.2 82 68-153 45-128 (128)
31 COG0824 FcbC Predicted thioest 98.6 3.5E-06 7.5E-11 61.6 14.7 100 53-154 5-113 (137)
32 PF13279 4HBT_2: Thioesterase- 98.6 3.6E-06 7.8E-11 59.2 14.2 93 61-154 2-104 (121)
33 PRK07531 bifunctional 3-hydrox 98.6 1.8E-06 4E-11 75.2 14.7 102 53-155 345-454 (495)
34 cd01288 FabZ FabZ is a 17kD be 98.6 1.5E-05 3.2E-10 56.7 16.8 107 45-153 12-130 (131)
35 PRK00006 fabZ (3R)-hydroxymyri 98.5 2.7E-05 5.8E-10 57.0 17.5 109 45-155 27-146 (147)
36 KOG2763 Acyl-CoA thioesterase 98.4 2E-06 4.4E-11 71.7 10.0 90 48-137 194-284 (357)
37 TIGR00189 tesB acyl-CoA thioes 98.3 1.6E-05 3.5E-10 63.7 11.8 78 69-152 21-98 (271)
38 cd03455 SAV4209 SAV4209 is a S 98.3 2.6E-05 5.6E-10 55.4 11.6 77 70-151 45-122 (123)
39 cd03441 R_hydratase_like (R)-h 98.2 3.7E-05 8.1E-10 54.0 11.5 81 67-150 41-125 (127)
40 cd03447 FAS_MaoC FAS_MaoC, the 98.1 0.00015 3.3E-09 52.1 12.7 81 69-151 43-123 (126)
41 cd03446 MaoC_like MoaC_like 98.1 5.1E-05 1.1E-09 54.7 10.0 79 70-152 52-139 (140)
42 COG5496 Predicted thioesterase 98.1 0.00039 8.5E-09 50.0 13.7 90 67-158 27-118 (130)
43 cd03451 FkbR2 FkbR2 is a Strep 98.1 4.8E-05 1E-09 55.2 9.5 84 69-156 54-145 (146)
44 cd03453 SAV4209_like SAV4209_l 98.1 0.00015 3.2E-09 51.8 11.9 77 69-150 45-125 (127)
45 cd00493 FabA_FabZ FabA/Z, beta 98.1 0.0013 2.9E-08 46.4 16.8 103 45-149 11-127 (131)
46 cd03454 YdeM YdeM is a Bacillu 97.9 0.00015 3.3E-09 52.4 10.3 52 101-153 81-139 (140)
47 TIGR01750 fabZ beta-hydroxyacy 97.9 0.0019 4.1E-08 46.7 16.0 106 45-152 20-139 (140)
48 cd01289 FabA_like Domain of un 97.9 0.0034 7.4E-08 45.7 17.2 108 45-154 18-137 (138)
49 PRK10526 acyl-CoA thioesterase 97.9 0.00019 4.2E-09 58.5 11.3 81 67-153 30-110 (286)
50 cd03444 Thioesterase_II_repeat 97.9 0.00044 9.5E-09 48.1 11.4 81 69-150 15-101 (104)
51 PRK13692 (3R)-hydroxyacyl-ACP 97.9 0.00026 5.7E-09 53.0 10.7 60 96-156 84-147 (159)
52 cd03452 MaoC_C MaoC_C The C-t 97.8 0.00037 8E-09 50.9 10.8 79 70-154 52-139 (142)
53 PRK13691 (3R)-hydroxyacyl-ACP 97.8 0.00082 1.8E-08 50.7 12.4 59 97-156 85-147 (166)
54 PLN02370 acyl-ACP thioesterase 97.7 0.0025 5.3E-08 54.8 15.4 102 54-155 140-256 (419)
55 PLN02868 acyl-CoA thioesterase 97.7 0.0003 6.5E-09 60.0 9.9 100 45-153 137-236 (413)
56 PRK08190 bifunctional enoyl-Co 97.7 0.00093 2E-08 58.0 13.1 82 70-155 60-143 (466)
57 PRK13188 bifunctional UDP-3-O- 97.6 0.0072 1.6E-07 52.6 17.2 109 45-155 341-461 (464)
58 PF07977 FabA: FabA-like domai 97.6 0.0079 1.7E-07 43.5 15.1 93 54-148 27-138 (138)
59 PF13622 4HBT_3: Thioesterase- 97.5 0.0016 3.6E-08 51.3 10.1 78 75-153 174-255 (255)
60 PF01643 Acyl-ACP_TE: Acyl-ACP 97.4 0.014 3.1E-07 46.8 14.8 101 55-156 5-121 (261)
61 TIGR00189 tesB acyl-CoA thioes 97.4 0.0033 7.3E-08 50.3 10.9 81 69-150 181-267 (271)
62 cd01287 FabA FabA, beta-hydrox 97.3 0.04 8.8E-07 40.8 15.3 97 52-150 27-143 (150)
63 PRK10526 acyl-CoA thioesterase 97.1 0.0098 2.1E-07 48.5 11.6 87 69-156 192-285 (286)
64 KOG2763 Acyl-CoA thioesterase 97.1 0.012 2.6E-07 49.4 11.6 96 60-155 15-126 (357)
65 COG0764 FabA 3-hydroxymyristoy 97.0 0.078 1.7E-06 39.3 15.6 102 52-156 33-146 (147)
66 PF01575 MaoC_dehydratas: MaoC 97.0 0.0057 1.2E-07 43.3 7.9 66 68-136 50-116 (122)
67 PRK13693 (3R)-hydroxyacyl-ACP 97.0 0.028 6.2E-07 41.1 11.7 80 68-152 54-140 (142)
68 KOG3016 Acyl-CoA thioesterase 96.8 0.027 5.9E-07 46.0 10.9 108 44-158 14-121 (294)
69 PF13452 MaoC_dehydrat_N: N-te 96.7 0.012 2.6E-07 41.9 7.4 51 95-146 74-131 (132)
70 COG2030 MaoC Acyl dehydratase 96.6 0.048 1E-06 40.6 10.9 54 101-155 99-156 (159)
71 cd03450 NodN NodN (nodulation 96.6 0.039 8.4E-07 40.8 10.2 79 70-150 58-144 (149)
72 cd03448 HDE_HSD HDE_HSD The R 96.6 0.041 9E-07 39.2 10.0 73 69-148 45-117 (122)
73 TIGR02278 PaaN-DH phenylacetic 96.1 0.037 8.1E-07 50.2 8.9 91 58-153 554-661 (663)
74 PLN02868 acyl-CoA thioesterase 96.0 0.052 1.1E-06 46.3 9.0 79 70-149 326-409 (413)
75 COG1946 TesB Acyl-CoA thioeste 96.0 0.036 7.8E-07 45.3 7.3 83 67-155 30-112 (289)
76 PLN02864 enoyl-CoA hydratase 95.8 0.22 4.7E-06 41.2 11.6 77 69-152 228-304 (310)
77 PRK11563 bifunctional aldehyde 95.8 0.077 1.7E-06 48.2 9.4 90 58-153 566-673 (675)
78 PF02551 Acyl_CoA_thio: Acyl-C 95.7 0.098 2.1E-06 38.0 8.1 78 70-148 45-127 (131)
79 PLN02864 enoyl-CoA hydratase 95.7 0.11 2.3E-06 43.1 9.3 61 96-156 94-158 (310)
80 COG1946 TesB Acyl-CoA thioeste 95.6 0.1 2.2E-06 42.7 8.7 85 70-155 193-284 (289)
81 PF03756 AfsA: A-factor biosyn 95.3 0.67 1.5E-05 33.0 14.9 100 51-152 19-131 (132)
82 TIGR01749 fabA beta-hydroxyacy 94.6 1.4 3.1E-05 33.2 15.8 93 53-148 51-156 (169)
83 PRK05174 3-hydroxydecanoyl-(ac 94.6 1.5 3.2E-05 33.2 16.1 102 45-148 39-159 (172)
84 PF14765 PS-DH: Polyketide syn 91.8 5.4 0.00012 31.6 13.3 95 52-152 182-286 (295)
85 KOG3016 Acyl-CoA thioesterase 91.2 0.98 2.1E-05 37.0 6.9 84 63-147 202-291 (294)
86 PF01643 Acyl-ACP_TE: Acyl-ACP 91.0 3.6 7.8E-05 32.9 10.0 96 51-151 163-259 (261)
87 COG3884 FatA Acyl-ACP thioeste 83.5 12 0.00026 29.9 8.6 58 96-155 56-113 (250)
88 PF11684 DUF3280: Protein of u 71.2 15 0.00033 26.9 5.6 41 111-151 79-119 (140)
89 PLN02370 acyl-ACP thioesterase 69.6 75 0.0016 27.6 10.3 94 54-152 302-401 (419)
90 TIGR02813 omega_3_PfaA polyket 66.3 22 0.00048 37.6 7.4 53 102-155 2522-2574(2582)
91 COG3884 FatA Acyl-ACP thioeste 54.9 71 0.0015 25.7 7.0 60 66-129 165-224 (250)
92 PF07210 DUF1416: Protein of u 40.6 1.1E+02 0.0024 20.5 5.6 45 111-156 4-54 (85)
93 COG3777 Uncharacterized conser 35.9 1.4E+02 0.003 24.3 6.0 87 52-149 184-271 (273)
94 KOG1206 Peroxisomal multifunct 35.3 35 0.00077 27.5 2.5 46 68-118 191-236 (272)
95 TIGR00074 hypC_hupF hydrogenas 32.6 90 0.002 20.4 3.8 24 96-119 23-46 (76)
96 PF04052 TolB_N: TolB amino-te 31.0 1.3E+02 0.0028 20.1 4.6 40 102-142 64-103 (105)
97 PF11138 DUF2911: Protein of u 25.1 1.8E+02 0.004 21.4 4.7 58 99-158 13-77 (145)
98 PF11141 DUF2914: Protein of u 25.0 1.6E+02 0.0034 18.5 3.8 23 127-150 42-64 (66)
99 PF11974 MG1: Alpha-2-macroglo 22.5 2.4E+02 0.0052 18.9 4.6 34 114-148 14-48 (97)
100 PF10648 Gmad2: Immunoglobulin 21.7 2.5E+02 0.0055 18.6 5.1 44 102-149 2-48 (88)
101 cd04316 ND_PkAspRS_like_N ND_P 21.7 1.8E+02 0.0039 19.6 3.9 34 106-142 6-41 (108)
No 1
>PRK10293 acyl-CoA esterase; Provisional
Probab=99.96 E-value=2e-27 Score=174.06 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=105.7
Q ss_pred ccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEecCCC
Q 031440 33 FSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTAK 110 (159)
Q Consensus 33 ~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~--~~~~vT~~l~i~fl~p~~ 110 (159)
.||.. +.|+++.+.++|+++++++++|+|+|++|.+|||++++|+|.+++.++.... ....+|+++++||++|++
T Consensus 18 ~~~~~---~LGi~i~~~~~g~~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~~~~~~~~~vTiel~infl~p~~ 94 (136)
T PRK10293 18 GNMVG---LLDIRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAR 94 (136)
T ss_pred ccHHH---hcCcEEEEEeCCEEEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHhcccCCceEEEEEEEeEEecccC
Confidence 56665 4599999999999999999999999999999999999999999988765532 345799999999999999
Q ss_pred CCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031440 111 VNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 154 (159)
Q Consensus 111 ~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~ 154 (159)
.| .|.++|++++.||++++++++++|+ +|+++|.+++++++.
T Consensus 95 ~g-~l~a~a~vv~~Gr~~~~~~~~v~d~-~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 95 EG-RVRGVCKPLHLGSRHQVWQIEIFDE-KGRLCCSSRLTTAIL 136 (136)
T ss_pred Cc-eEEEEEEEEecCCCEEEEEEEEEeC-CCCEEEEEEEEEEEC
Confidence 87 6999999999999999999999998 799999999999873
No 2
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=174.41 Aligned_cols=124 Identities=41% Similarity=0.590 Sum_probs=113.7
Q ss_pred cccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-cCCCeEEEEEEEEEEecCCCCC
Q 031440 34 SFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYV-EGLPMKVSVDMSISFVSTAKVN 112 (159)
Q Consensus 34 ~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~-~~~~~~vT~~l~i~fl~p~~~g 112 (159)
.|.+. +.++++.+.++|++.++|+++|+|+|+.|++|||++|+|+|..++.++.. .+.++.|+++|+++||+|+++|
T Consensus 21 ~Fd~~--~~~i~~~~~~~Grv~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~~~~~~~gvsvdLsvsyL~~AklG 98 (148)
T KOG3328|consen 21 GFDRV--LNNIRIVSAEPGRVSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLMTSGFKPGVSVDLSVSYLSSAKLG 98 (148)
T ss_pred chhhh--cCceEEeeccCceEEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHhccCCCCceEEEEEhhhccccCCC
Confidence 35543 48999999999999999999999999999999999999999999986544 4456789999999999999999
Q ss_pred CEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeecCCCC
Q 031440 113 DELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPSKM 159 (159)
Q Consensus 113 ~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~~~~~ 159 (159)
+.|+++++++++|+++++++|+++...+|+++|++++++|+.|.+++
T Consensus 99 e~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~~~~~~~ 145 (148)
T KOG3328|consen 99 EELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYFRPASKL 145 (148)
T ss_pred CeEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEEeecCCCC
Confidence 99999999999999999999999998889999999999999998874
No 3
>PRK10254 thioesterase; Provisional
Probab=99.95 E-value=1.4e-26 Score=169.69 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=107.2
Q ss_pred CCccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEEEEecC
Q 031440 31 TEFSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVE--GLPMKVSVDMSISFVST 108 (159)
Q Consensus 31 ~~~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~--~~~~~vT~~l~i~fl~p 108 (159)
.+++|.. ..|+++.+.++|++++++++.|+++|+.|.+|||++++|+|.++++++... .....+|+++++|||+|
T Consensus 16 ~~~~~~~---~LGi~i~ei~~g~~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~~~~~g~~~vTiel~in~Lrp 92 (137)
T PRK10254 16 SDNTMVA---HLGIVYTRLGDDVLEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFLMTRDGQCVVGTELNATHHRP 92 (137)
T ss_pred cccchHH---hhCcEEEEEeCCEEEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEeEEecc
Confidence 3466775 349999999999999999999999999999999999999999999887643 33468999999999999
Q ss_pred CCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031440 109 AKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 154 (159)
Q Consensus 109 ~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~ 154 (159)
++.| .|.++|++++.||++.+++++++++ +|+++|.++.+..+.
T Consensus 93 ~~~g-~l~a~a~vi~~Gr~~~v~~~~v~d~-~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 93 VSEG-KVRGVCQPLHLGRQNQSWEIVVFDE-QGRRCCTCRLGTAVL 136 (137)
T ss_pred CcCC-eEEEEEEEEecCcCEEEEEEEEEcC-CCCEEEEEEEEEEEe
Confidence 9877 6999999999999999999999997 799999999998875
No 4
>PLN02322 acyl-CoA thioesterase
Probab=99.94 E-value=7.9e-26 Score=168.43 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=105.0
Q ss_pred ccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEecCCCC
Q 031440 33 FSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG-LPMKVSVDMSISFVSTAKV 111 (159)
Q Consensus 33 ~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~-~~~~vT~~l~i~fl~p~~~ 111 (159)
.||+. ..|+++.+.++|++++++++.++|+|++|.+|||++++|+|.++++++.... ....+|++++++||+|++.
T Consensus 10 dpf~~---~LGi~l~ei~~G~~~~~m~v~~~~~N~~G~vHGGv~atLaDta~g~A~~~~~~~~~~vTiel~infLrpa~~ 86 (154)
T PLN02322 10 DPPLH---MLGFEFDELSPTRVTGRLPVSPMCCQPFKVLHGGVSALIAESLASLGAHMASGFKRVAGIQLSINHLKSADL 86 (154)
T ss_pred chHHH---HCCCEEEEEECCEEEEEEECCHHHcCCCCCccHHHHHHHHHHHHHHHHhhccCCCceEEEEEEEEEeccCCC
Confidence 45565 3599999999999999999999999999999999999999999988765432 3357999999999999999
Q ss_pred CCEEEEEEEEEeEcCcEEEEEEEEEEC----C-CCcEEEEEEEEEEee
Q 031440 112 NDELEITGRVLGQRGGYSGTIVLMRNK----A-TGEVIAEGRHSLFGR 154 (159)
Q Consensus 112 g~~l~~~a~v~~~gr~~~~v~~~i~~~----~-~g~lvA~a~~t~~i~ 154 (159)
|+.|.++|++++.||++.+++++|++. + +++++|.++.|+.+.
T Consensus 87 G~~L~Aea~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 87 GDLVFAEATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred CCEEEEEEEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 999999999999999999999999983 1 279999999998553
No 5
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=99.94 E-value=1.5e-25 Score=158.78 Aligned_cols=111 Identities=20% Similarity=0.267 Sum_probs=102.5
Q ss_pred ecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEE
Q 031440 41 LRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGR 120 (159)
Q Consensus 41 l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~ 120 (159)
+.|+++.+.++|.+.++++++|+|+|+.|++|||++++++|.+++.++...+ ...+|.+++++|++|++.|+.|.++++
T Consensus 3 ~lg~~i~~~~~g~~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~~~-~~~~t~~~~i~f~rp~~~G~~l~~~a~ 81 (114)
T TIGR02286 3 ALGIDILELGPGFARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNSYG-DAAVAAQCTIDFLRPGRAGERLEAEAV 81 (114)
T ss_pred ccCeEEEEecCCEEEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcCCC-CceEEEEEEEEEecCCCCCCEEEEEEE
Confidence 3599999999999999999999999999999999999999999887764433 346899999999999999999999999
Q ss_pred EEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 121 VLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 121 v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+++.|++..+++++++++ +|+++|++++++++
T Consensus 82 v~~~g~~~~~~~~~i~~~-~~~~va~~~~t~~~ 113 (114)
T TIGR02286 82 EVSRGGRTGTYDVEVVNQ-EGELVALFRGTSRR 113 (114)
T ss_pred EEEeCCcEEEEEEEEEcC-CCCEEEEEEEEEEE
Confidence 999999999999999996 79999999999986
No 6
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=99.94 E-value=9.8e-26 Score=160.22 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=101.5
Q ss_pred ecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEEEEecCCCCCCEEEEE
Q 031440 41 LRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVE--GLPMKVSVDMSISFVSTAKVNDELEIT 118 (159)
Q Consensus 41 l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~--~~~~~vT~~l~i~fl~p~~~g~~l~~~ 118 (159)
+.|+++.+.++|.+++++++.|+++|+.|++|||++++++|.+++.++... .....+|.+++++|++|++.| .|.++
T Consensus 5 ~lg~~~~~~~~g~~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~ 83 (117)
T TIGR00369 5 FLGIEIEELGDGFLEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYLCNSGGQAVVGLELNANHLRPAREG-KVRAI 83 (117)
T ss_pred ccCeEEEEecCCEEEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHhhcCCCceEEEEEEEeeeccccCCC-EEEEE
Confidence 359999999999999999999999999999999999999999997765442 234579999999999999999 89999
Q ss_pred EEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 119 GRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 119 a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+++++.||+..+++++++++ +|+++|+|+++|++
T Consensus 84 a~v~~~gr~~~~~~~~i~~~-~g~~va~~~~t~~~ 117 (117)
T TIGR00369 84 AQVVHLGRQTGVAEIEIVDE-QGRLCALSRGTTAV 117 (117)
T ss_pred EEEEecCceEEEEEEEEECC-CCCEEEEEEEEEcC
Confidence 99999999999999999997 79999999999874
No 7
>PRK11688 hypothetical protein; Provisional
Probab=99.94 E-value=6.7e-26 Score=168.87 Aligned_cols=117 Identities=25% Similarity=0.431 Sum_probs=103.8
Q ss_pred CccccchheecCeEEEEEcCCEEEEEEEcCCCCCC--CCCCccHHHHHHHHHHHHHHHHHhcCC---------------C
Q 031440 32 EFSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTD--RNGNLANGAIANLVDEVGGAVVYVEGL---------------P 94 (159)
Q Consensus 32 ~~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N--~~G~lHGG~latl~D~a~~~a~~~~~~---------------~ 94 (159)
.+||.+ +.|+++.+.++|.+.+++++.++|+| +.|.+|||+++||+|.+++.++..... .
T Consensus 20 ~~pf~~---~lG~~~~~~~~g~~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a~g~a~~~~~~~~~~~~~~~~~~~~~~ 96 (154)
T PRK11688 20 HMPFNR---LLGLELERLEPDFVELSFKMQPELVGNIAQSILHGGVIASVLDVAGGLVCVGGILARHEDISEEELRQRLS 96 (154)
T ss_pred cCCHHH---HhCcEEEEEeCCEEEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 356665 35999999999999999999999995 689999999999999999988765210 1
Q ss_pred eEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 95 MKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 95 ~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
..+|++|+++|++|++ |+.|.++|++++.||++++++++++++ +|+++|+++++|++
T Consensus 97 ~~vTi~l~i~fl~p~~-g~~l~a~a~v~~~g~r~~~~~~~i~~~-~g~lvA~a~~t~~v 153 (154)
T PRK11688 97 RLGTIDLRVDYLRPGR-GERFTATSSVLRAGNKVAVARMELHNE-QGVHIASGTATYLV 153 (154)
T ss_pred cceEEEEEEEeeccCC-CCeEEEEEEEEEccCCEEEEEEEEECC-CCCEEEEEEEEEEe
Confidence 3589999999999996 889999999999999999999999997 79999999999986
No 8
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.93 E-value=7.8e-25 Score=160.71 Aligned_cols=122 Identities=24% Similarity=0.360 Sum_probs=109.6
Q ss_pred CccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEEEEEecCC
Q 031440 32 EFSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGL--PMKVSVDMSISFVSTA 109 (159)
Q Consensus 32 ~~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~--~~~vT~~l~i~fl~p~ 109 (159)
+++|.+ ..|+++.+.++|++.+++++.+++.|++|++|||++++++|.++++++..... ...+|+++++||+||+
T Consensus 17 ~~~~~~---~lg~~~~~~~~g~~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~~~~~~~~~ti~l~i~flr~~ 93 (141)
T COG2050 17 RSPFLK---TLGIEIEEIEEGEAEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSLLGVVALAVTLELNINFLRPV 93 (141)
T ss_pred ccchhh---hcCcEEEEEecceEEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhccCccceeEEEEEEehhccCC
Confidence 356665 34889999999999999999999999999999999999999999999877543 3469999999999999
Q ss_pred CCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeecCC
Q 031440 110 KVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPS 157 (159)
Q Consensus 110 ~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~~~ 157 (159)
+.|+ +.++|++++.||+.+++++++++++.++++|++++++++.+..
T Consensus 94 ~~g~-v~a~a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 94 KEGD-VTAEARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred CCCe-EEEEEEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 9998 9999999999999999999999765679999999999998764
No 9
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=99.87 E-value=1.9e-20 Score=130.69 Aligned_cols=108 Identities=29% Similarity=0.438 Sum_probs=99.5
Q ss_pred CeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEecCCCCCCEEEEEEE
Q 031440 43 GIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTAKVNDELEITGR 120 (159)
Q Consensus 43 gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~--~~~~vT~~l~i~fl~p~~~g~~l~~~a~ 120 (159)
|+.+.+.+++.+.+++++.+.++|+.|++|||++++++|.+++..+.... ....++.+++++|++|++. +.+.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~-~~v~~~~~ 81 (113)
T cd03443 3 GIRVVEVGPGRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSALPPGALAVTVDLNVNYLRPARG-GDLTARAR 81 (113)
T ss_pred cEEEEEecCCeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhccCCCCceEEEEEEEeEEcCCCC-CeEEEEEE
Confidence 77888999999999999999999999999999999999999998776653 3457999999999999999 88999999
Q ss_pred EEeEcCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 031440 121 VLGQRGGYSGTIVLMRNKATGEVIAEGRHSLF 152 (159)
Q Consensus 121 v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~ 152 (159)
+.+.|++.+.++++++++ +|+++|+|+.++.
T Consensus 82 v~~~g~~~~~~~~~~~~~-~~~~~a~a~~~~~ 112 (113)
T cd03443 82 VVKLGRRLAVVEVEVTDE-DGKLVATARGTFA 112 (113)
T ss_pred EEecCceEEEEEEEEECC-CCCEEEEEEEEEe
Confidence 999999999999999987 6999999998875
No 10
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=99.84 E-value=2e-19 Score=131.91 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=96.1
Q ss_pred CccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHH----hcC-CCeEEEEEEEEEEe
Q 031440 32 EFSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVY----VEG-LPMKVSVDMSISFV 106 (159)
Q Consensus 32 ~~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~----~~~-~~~~vT~~l~i~fl 106 (159)
.-||.. ..|+++.+.++|++++++++.|+ .|+.|++|||+++|++|.++..++. ..+ ....||.+++|+|+
T Consensus 5 ~ip~~~---~lGi~v~e~~~g~~~v~~pl~~n-~N~~G~~hGG~l~tlad~a~~~~~~~~~~~~~~~~~~vt~~~~i~yl 80 (138)
T TIGR02447 5 AIPLSE---AMGIAVSSYTGGELRLSAPLAAN-INHHGTMFGGSLYTLATLSGWGLLWLRLQELGIDGDIVIADSHIRYL 80 (138)
T ss_pred hCCHHH---HcCCEEEEeeCCEEEEEeECCCC-cCCCCceehhHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeeeEEc
Confidence 456665 35999999999999999999996 8999999999999999987654332 122 23579999999999
Q ss_pred cCCCCCCEEEEEEEE-------------EeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 107 STAKVNDELEITGRV-------------LGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 107 ~p~~~g~~l~~~a~v-------------~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
+|+..+ +.+++++ .+.||+..++++++++ +|+++|+++++|++.+
T Consensus 81 ~P~~~~--~~a~~~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~~ 138 (138)
T TIGR02447 81 APVTGD--PVANCEAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVALP 138 (138)
T ss_pred CCcCCC--eEEEEEcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEeC
Confidence 999743 6777777 7889999999999996 4799999999998754
No 11
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=99.78 E-value=1.4e-17 Score=123.96 Aligned_cols=107 Identities=15% Similarity=0.123 Sum_probs=93.9
Q ss_pred cCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEecCCCCCCEEEEEEEEEeEcCcE
Q 031440 50 EPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRGGY 128 (159)
Q Consensus 50 ~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~ 128 (159)
+++.+.++..+.|.+.|++|++|||.+++++|.++++++....+..+||+++ +++|++|++.|+.|.+++++.+.||++
T Consensus 10 ~~~~~~~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~v~~~GrTS 89 (157)
T COG1607 10 PEGELVLRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRHAGGRVVTASVDSVDFKKPVRVGDIVCLYARVVYTGRTS 89 (157)
T ss_pred CCceeEEEEEecCCccCcccccccHHHHHHHHHHHHHHHHHHhCCeEEEEEeceEEEccccccCcEEEEEEEEeecCccc
Confidence 3577889999999999999999999999999999999888776666899998 799999999999999999999999999
Q ss_pred EEEEEEEEECC----CCcEEEEEEEEEEeecC
Q 031440 129 SGTIVLMRNKA----TGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 129 ~~v~~~i~~~~----~g~lvA~a~~t~~i~~~ 156 (159)
+.+.+++|.++ .....+++.++|...+.
T Consensus 90 m~V~Vev~~~~~~~~~~~~~t~~~ft~VAvd~ 121 (157)
T COG1607 90 MEVGVEVWAEDIRSGERRLATSAYFTFVAVDE 121 (157)
T ss_pred EEEEEEEEEecccCCcceEeeeEEEEEEEECC
Confidence 99999999752 23567788888776654
No 12
>PRK10694 acyl-CoA esterase; Provisional
Probab=99.78 E-value=1.9e-17 Score=120.85 Aligned_cols=106 Identities=15% Similarity=0.112 Sum_probs=91.4
Q ss_pred cCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEecCCCCCCEEEEEEEEEeEcCcE
Q 031440 50 EPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRGGY 128 (159)
Q Consensus 50 ~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~ 128 (159)
.++.....+.+.|+++|++|++|||.+++|+|+++++++....+..++|+++ .++|++|++.|+.|.++++|.+.|+++
T Consensus 8 ~~~~~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~~~~~~vtv~vd~i~F~~Pv~~Gd~l~~~a~V~~~g~sS 87 (133)
T PRK10694 8 PQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTGTTS 87 (133)
T ss_pred CCCceEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEECceEECCCcccCcEEEEEEEEEEccCce
Confidence 4567888899999999999999999999999999998887766566899999 789999999999999999999999999
Q ss_pred EEEEEEEEECC-------CCcEEEEEEEEEEeec
Q 031440 129 SGTIVLMRNKA-------TGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 129 ~~v~~~i~~~~-------~g~lvA~a~~t~~i~~ 155 (159)
+.++++++.+. +.++++++.+||...+
T Consensus 88 ~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd 121 (133)
T PRK10694 88 ISINIEVWVKKVASEPIGQRYKATEALFTYVAVD 121 (133)
T ss_pred EEEEEEEEEeecccCCCCcEEEEEEEEEEEEEEC
Confidence 99999998521 1246788888876544
No 13
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.77 E-value=3.1e-17 Score=115.77 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=92.5
Q ss_pred cCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEecCCCCCCEEEEEEEEEeEcCcE
Q 031440 50 EPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRGGY 128 (159)
Q Consensus 50 ~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~~ 128 (159)
+++.+..++++.++++|+.|.+|||++++++|.+++.++........++..+ +++|++|++.|+.|.+++++.+.|++.
T Consensus 4 ~~~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~f~~p~~~gd~l~i~~~v~~~g~~~ 83 (123)
T cd03442 4 EDTELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTGRTS 83 (123)
T ss_pred CccceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHHhCCcEEEEEECceEEcCccccCcEEEEEEEEEEecCCe
Confidence 5678899999999999999999999999999999987765443334677777 799999999999999999999999999
Q ss_pred EEEEEEEEECC----CCcEEEEEEEEEEeec
Q 031440 129 SGTIVLMRNKA----TGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 129 ~~v~~~i~~~~----~g~lvA~a~~t~~i~~ 155 (159)
+.+++++++++ +++++++|..++....
T Consensus 84 ~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~ 114 (123)
T cd03442 84 MEVGVEVEAEDPLTGERRLVTSAYFTFVALD 114 (123)
T ss_pred EEEEEEEEEecCCCCcEEEEEEEEEEEEEEC
Confidence 99999999863 2479999999887754
No 14
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=99.68 E-value=8.9e-16 Score=100.42 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEE
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEGL--PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIA 145 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~~--~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA 145 (159)
+|++|||.+++|+|.+...++...+. ...++.+++++|++|++.|+.|.+++++.+.|+++++++++++++ +++++|
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~~~~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~~~v~~~-~~~~~~ 79 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSHGGDGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVEVEVYSE-DGRLCA 79 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHHHSSTEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEEEEEEET-TSCEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHhccCCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEEEEEEEC-CCcEEC
Confidence 58999999999999999988876543 468999999999999999999999999999999999999999998 687776
No 15
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=99.64 E-value=8.3e-15 Score=106.56 Aligned_cols=115 Identities=23% Similarity=0.400 Sum_probs=85.4
Q ss_pred ccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh-cCCC-eEEEEEEEEEEecCCC
Q 031440 33 FSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYV-EGLP-MKVSVDMSISFVSTAK 110 (159)
Q Consensus 33 ~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~-~~~~-~~vT~~l~i~fl~p~~ 110 (159)
.||+. ..|+++.+.+++++.++++..+...|+.|++|||++++++|.++++.+.. .+.. ..+..+++++|++|+.
T Consensus 13 ~P~~~---~~g~~i~~~~~~~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~l~~~~~~~~k~~~i~f~kpa~ 89 (132)
T PF14539_consen 13 VPFFG---TAGIRIEEVDPGRVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSNLGDKYRVWDKSAEIDFLKPAR 89 (132)
T ss_dssp SHHHH---CCT-EEEEEETTEEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHHS-TTEEEEEEEEEEEE-S---
T ss_pred cCccc---cceeEEEEEcCCEEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHhCCCcEEEEEEeeEEEEEeccC
Confidence 34554 35999999999999999999999999999999999999999999976654 3333 4678899999999996
Q ss_pred CCCEEEEEEEEEeE---cCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 111 VNDELEITGRVLGQ---RGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 111 ~g~~l~~~a~v~~~---gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
| .|.+++++... .+....++++++|+ +|+.+|+++.++||
T Consensus 90 -g-~v~a~~~~~~e~~~~~~~~~~~v~i~D~-~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 90 -G-DVTATAELTEEQIGERGELTVPVEITDA-DGEVVAEATITWYV 132 (132)
T ss_dssp -S--EEEEEE-TCCHCCHEEEEEEEEEEEET-TC-EEEEEEEEEEE
T ss_pred -C-cEEEEEEcCHHHhCCCcEEEEEEEEEEC-CCCEEEEEEEEEEC
Confidence 5 38888888653 25567789999998 79999999999986
No 16
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=99.61 E-value=1.5e-14 Score=98.62 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=75.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEE
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEG-LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAE 146 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~-~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~ 146 (159)
.+.+|||++++++|.+++.++.... ....+|.+++++|++|++.++++++++++++.|++.++.+++++++ +|+++|+
T Consensus 14 ~~~~hgg~la~l~D~a~~~~~~~~~~~~~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~-~G~lva~ 92 (99)
T cd00556 14 DRRVFGGQLAAQSDLAALRTVPRPHGASGFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQR-DGKLVAS 92 (99)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhcccCCCCeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEECC-CCcEEEE
Confidence 7999999999999999988775532 2357999999999999999999999999999999999999999997 7999999
Q ss_pred EEEEEE
Q 031440 147 GRHSLF 152 (159)
Q Consensus 147 a~~t~~ 152 (159)
++.++.
T Consensus 93 ~~~~~~ 98 (99)
T cd00556 93 ATQSFL 98 (99)
T ss_pred EEEeEc
Confidence 998875
No 17
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=99.50 E-value=2.3e-12 Score=98.83 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=90.4
Q ss_pred EEEEEcCC-EEEEEEEcCCCCC-CCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEE
Q 031440 45 RVDRVEPG-LVSCTFKVPPRLT-DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVL 122 (159)
Q Consensus 45 ~~~~~~~g-~v~~~~~v~~~~~-N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~ 122 (159)
++.+.++| .+...+.+..++. |..+.+|||.+++++|.++..+ .+....++...+++|++|+.+||.|.++++++
T Consensus 76 ~i~eie~g~~a~~~k~Vt~ne~fn~~~i~hG~f~~aqa~~la~~~---~~~~~~~~~i~~irF~kPV~pGD~L~~ea~v~ 152 (185)
T PRK04424 76 ELIDLELGRSAISILEITEEMVFSKTGIARGHHLFAQANSLAVAV---IDAELALTGVANIRFKRPVKLGERVVAKAEVV 152 (185)
T ss_pred eEEEecCCcEEEEEEecChhhccCCCCeecHHHHHHHHHHHHHHh---cCCcEEEEEeeeEEEccCCCCCCEEEEEEEEE
Confidence 67788888 6899999999999 9999999999999999863322 24445677778999999999999999999999
Q ss_pred eEcCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 123 GQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 123 ~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+.+++...++++++. +|+++++|..++++
T Consensus 153 ~~~~~~~~v~~~~~v--~g~~V~ege~~~~~ 181 (185)
T PRK04424 153 RKKGNKYIVEVKSYV--GDELVFRGKFIMYR 181 (185)
T ss_pred EccCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 999999999999996 58999999999876
No 18
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.48 E-value=3.1e-12 Score=87.04 Aligned_cols=97 Identities=20% Similarity=0.195 Sum_probs=85.9
Q ss_pred EEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC---------CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcC
Q 031440 56 CTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRG 126 (159)
Q Consensus 56 ~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr 126 (159)
.++.+.+.++|..|.+|+|.+.+++|++....+...+ +...++.+.+++|++|++.|+.|.+++++.+.++
T Consensus 3 ~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~~~~~~~~~ 82 (110)
T cd00586 3 LEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLGR 82 (110)
T ss_pred EEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHcCCCHHHHHhCCceEEEEEeEeeEcCccCCCCEEEEEEEEEecCc
Confidence 4678999999999999999999999999987665432 2346889999999999999999999999999999
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 127 GYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 127 ~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+.+.++.+++++ +|+++|+|..++..
T Consensus 83 ~~~~~~~~~~~~-~g~~~a~~~~~~~~ 108 (110)
T cd00586 83 KSFTFEQEIFRE-DGELLATAETVLVC 108 (110)
T ss_pred EEEEEEEEEECC-CCeEEEEEEEEEEE
Confidence 999999999987 79999999977654
No 19
>PLN02647 acyl-CoA thioesterase
Probab=99.44 E-value=4.3e-12 Score=108.42 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=92.3
Q ss_pred EEEEEcCCEEEEEEEcCC------CCCCCCCCccHHHHHHHHHHHHHHHHHhcCCC--------eEEEEEE-EEEEecCC
Q 031440 45 RVDRVEPGLVSCTFKVPP------RLTDRNGNLANGAIANLVDEVGGAVVYVEGLP--------MKVSVDM-SISFVSTA 109 (159)
Q Consensus 45 ~~~~~~~g~v~~~~~v~~------~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~--------~~vT~~l-~i~fl~p~ 109 (159)
......+..+.+..++.+ .+.|++|.+|||.++.++|.++++++..+... ..||+++ +|+|++|+
T Consensus 79 ~~k~~~~S~~~~~~~~~~d~~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh~~~~~~~~~p~~vVTAsVD~i~F~~Pi 158 (437)
T PLN02647 79 LTKTPSQSRTSILYKFSSDFILREQYRNPWNEVRIGKLLEDLDALAGTISVKHCSDDDSTTRPLLLVTASVDKIVLKKPI 158 (437)
T ss_pred cccccccceEEEEEecCCchhhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHHhCCCcccCCcceEEEEEECcEEEcCCC
Confidence 333445567777775444 45999999999999999999999988776543 5899998 79999999
Q ss_pred CCCCEEEEEEEEEeEcCcEEEEEEEEEECC------CCcEEEEEEEEEEeecC
Q 031440 110 KVNDELEITGRVLGQRGGYSGTIVLMRNKA------TGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 110 ~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~------~g~lvA~a~~t~~i~~~ 156 (159)
..|+.|.++|+|...|++++.+.++++.+. +..++++|.+||.....
T Consensus 159 ~~g~~v~l~g~Vt~vGrSSMEV~v~V~~~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 159 RVDVDLKIVGAVTWVGRSSMEIQLEVIQPTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred cCCcEEEEEEEEEEecCCeEEEEEEEEEccccCCCCcEEEEEEEEEEEEEEcC
Confidence 999999999999999999999999999752 12478999999877653
No 20
>PLN02647 acyl-CoA thioesterase
Probab=99.43 E-value=5.6e-12 Score=107.71 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=87.8
Q ss_pred EcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEecCCCCCCEEEEEEEEEeEcCc
Q 031440 49 VEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRGG 127 (159)
Q Consensus 49 ~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr~ 127 (159)
..+..+.....+.|++.|.+|++|||.++.++|+++++++....+..++|+++ .++|++|++.|+.|.++|+|+..+..
T Consensus 286 m~dT~~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r~a~~~~vt~svd~v~F~~PV~vGdil~l~A~V~yt~~~ 365 (437)
T PLN02647 286 IRDTRLENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYAFAGLRPYFLEVDHVDFLRPVDVGDFLRFKSCVLYTELE 365 (437)
T ss_pred ccccceEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHHHcCCceEEEEecceEecCccccCcEEEEEEEEEEEeEE
Confidence 34566778889999999999999999999999999998887776656789988 79999999999999999999887754
Q ss_pred -----EEEEEEE--EEECC--CCcEEEEEEEEEEeecC
Q 031440 128 -----YSGTIVL--MRNKA--TGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 128 -----~~~v~~~--i~~~~--~g~lvA~a~~t~~i~~~ 156 (159)
.+.+++. +.+++ +++++.++.+||.+.+.
T Consensus 366 s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~ 403 (437)
T PLN02647 366 NSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPE 403 (437)
T ss_pred ecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEecc
Confidence 4455544 44432 35688899999887654
No 21
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.29 E-value=1.3e-11 Score=101.88 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=95.8
Q ss_pred ccccchheecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCC
Q 031440 33 FSFYEDFALRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVN 112 (159)
Q Consensus 33 ~~~~~~~~l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g 112 (159)
..-|++.+..++.-.. .+..+ .+.+.|.|.|+.|++..|++++++-++.-..+....+...+..+++++||+|++.+
T Consensus 315 get~~d~I~~~l~e~~-~~~~~--t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k~~~~niiIE~i~iyflk~vqid 391 (432)
T COG4109 315 GETISDQIANNLSEKG-DEYGV--TVEVEPQMINSLGTISNGVFTELLTEVVQRVLRKKKKRNIIIENITIYFLKPVQID 391 (432)
T ss_pred cccHHHHHHhhhhhhc-cccce--EEEechhhccccccchHHHHHHHHHHHHHHHHHHhcCCceEEEeeeeeeecceecc
Confidence 4556666666653222 22222 38899999999999999999999999988877766555678899999999999999
Q ss_pred CEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 113 DELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 113 ~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+.|+++++++..||+.+.++++++++ |.++|+|-.+.-+
T Consensus 392 ~~l~I~prIl~~gR~~a~idvei~~~--~~ivaKAiv~~ql 430 (432)
T COG4109 392 SVLEIYPRILEEGRKFAKIDVEIYHD--GQIVAKAIVTVQL 430 (432)
T ss_pred cEEEEeeeeeccccccceeEEEEeeC--cchhhhheeeeec
Confidence 99999999999999999999999995 8889999766543
No 22
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.28 E-value=4.2e-10 Score=72.21 Aligned_cols=95 Identities=22% Similarity=0.334 Sum_probs=83.1
Q ss_pred EEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC--CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEE
Q 031440 56 CTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG--LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIV 133 (159)
Q Consensus 56 ~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~--~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~ 133 (159)
..+.+.+.+.+..+.+|||.+..++|.+....+.... ....++.+++++|++|++.|+.+.++.++.+.+++...+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~ 82 (100)
T cd03440 3 LRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLGAVTLSLDVRFLRPVRPGDTLTVEAEVVRVGRSSVTVEV 82 (100)
T ss_pred EEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeEEecCCCCCCEEEEEEEEEeccccEEEEEE
Confidence 4677888888999999999999999999997765543 33578899999999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEEEEEE
Q 031440 134 LMRNKATGEVIAEGRHSL 151 (159)
Q Consensus 134 ~i~~~~~g~lvA~a~~t~ 151 (159)
+++++ +|++++.+..++
T Consensus 83 ~~~~~-~~~~~~~~~~~~ 99 (100)
T cd03440 83 EVRNE-DGKLVATATATF 99 (100)
T ss_pred EEECC-CCCEEEEEEEEe
Confidence 99997 699999987553
No 23
>KOG4781 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=6e-11 Score=92.64 Aligned_cols=96 Identities=20% Similarity=0.190 Sum_probs=83.7
Q ss_pred CeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEecCCCCCCEEEEEEEE
Q 031440 43 GIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG-LPMKVSVDMSISFVSTAKVNDELEITGRV 121 (159)
Q Consensus 43 gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~-~~~~vT~~l~i~fl~p~~~g~~l~~~a~v 121 (159)
...+-..+.++.+.-+.+.+..+++.|.+|||+|||++|++.+.+.+... .+..+|++|+++|..|++....+.+++..
T Consensus 116 p~vFyd~s~~e~v~i~h~G~~L~gy~~~iHgG~IATllde~L~~c~fl~~pnk~~vTanLsisy~~pip~~~f~vi~t~~ 195 (237)
T KOG4781|consen 116 PVVFYDPSHREMVVIFHLGKDLTGYPGLVHGGAIATLLDEALAMCAFLALPNKIGVTANLSISYKRPIPTNHFVVIRTQL 195 (237)
T ss_pred cEEEEecCCCeEEEEEeccccccCCCCccchHHHHHHHHHHHHHhhcccCCchhheeeecccccCCCcccceEEEEecch
Confidence 33455556778899999999999999999999999999999999887644 34589999999999999999999999999
Q ss_pred EeEcCcEEEEEEEEEEC
Q 031440 122 LGQRGGYSGTIVLMRNK 138 (159)
Q Consensus 122 ~~~gr~~~~v~~~i~~~ 138 (159)
.+.-+|.+...+++...
T Consensus 196 ~~~~Grk~~~~g~l~~~ 212 (237)
T KOG4781|consen 196 DKVEGRKCKTFGELNVQ 212 (237)
T ss_pred hhhcCcccceeeEEEEe
Confidence 99999888888887764
No 24
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.00 E-value=5.2e-08 Score=69.89 Aligned_cols=100 Identities=15% Similarity=0.182 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC---------CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEc
Q 031440 55 SCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQR 125 (159)
Q Consensus 55 ~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g 125 (159)
..+.++....++..|.+|-+.+..+++.+........+ +...+..+.+++|++|+..|+.|.++.++.+.|
T Consensus 4 ~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v~t~v~~~~ 83 (130)
T PRK10800 4 RWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALLAERVAFVVRKMTVEYYAPARLDDMLEVQSEITSMR 83 (130)
T ss_pred EEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEEcCcccCCCEEEEEEEEEeeC
Confidence 35678888999999999999999999999775443322 124688899999999999999999999999999
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 126 GGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 126 r~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
+..+....+++++ +|+++|+|..++....
T Consensus 84 ~~s~~~~~~i~~~-~g~~~a~~~~~~v~~d 112 (130)
T PRK10800 84 GTSLTFTQRIVNA-EGTLLNEAEVLIVCVD 112 (130)
T ss_pred cEEEEEEEEEEcC-CCeEEEEEEEEEEEEE
Confidence 9998899999986 7999999998866654
No 25
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=98.94 E-value=6.5e-08 Score=68.54 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=82.0
Q ss_pred EEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC----------CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEc
Q 031440 56 CTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG----------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQR 125 (159)
Q Consensus 56 ~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~----------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g 125 (159)
.++++.+..+++.|.+|.+.+..+++.+....+...+ +...+..+.+++|++|++.|+.|.+++++.+.|
T Consensus 3 ~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v~~~v~~~~ 82 (126)
T TIGR02799 3 WPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRALGFEQSALLEETGLVFVVRSMELDYLKPARLDDLLTVTTRVVELK 82 (126)
T ss_pred ceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHcCCCHHHHhhcCCcEEEEEEEEEEEcCcccCCCEEEEEEEEEecC
Confidence 4677888999999999999999999988775443221 123588899999999999999999999999999
Q ss_pred CcEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031440 126 GGYSGTIVLMRNKATGEVIAEGRHSLFGR 154 (159)
Q Consensus 126 r~~~~v~~~i~~~~~g~lvA~a~~t~~i~ 154 (159)
++.+....++++ +|+++|.|..++...
T Consensus 83 ~~~~~~~~~i~~--~g~~~a~~~~~~v~v 109 (126)
T TIGR02799 83 GASLVFAQEVRR--GDTLLCEATVEVACV 109 (126)
T ss_pred ceEEEEEEEEEe--CCEEEEEEEEEEEEE
Confidence 999999999996 589999998876544
No 26
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=98.91 E-value=7.4e-08 Score=66.10 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=67.5
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEE
Q 031440 67 RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAE 146 (159)
Q Consensus 67 ~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~ 146 (159)
..+.+|||.+++++-.++...+ ... ....+++.+|++|+..+.+++++.++++.||+..+.+++++++ |+++..
T Consensus 14 ~~~~~~GG~l~a~a~~Aa~~~~---~~~-~~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~Q~--g~~~~~ 87 (94)
T cd03445 14 QGRGVFGGQVLAQALVAAARTV---PDD-RVPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAVQN--GKVIFT 87 (94)
T ss_pred CCCceEHHHHHHHHHHHHHhhC---CCC-CCeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEEEC--CEEEEE
Confidence 5789999999999888776544 221 3466889999999998889999999999999999999999984 899999
Q ss_pred EEEEEE
Q 031440 147 GRHSLF 152 (159)
Q Consensus 147 a~~t~~ 152 (159)
++.+|-
T Consensus 88 a~~sf~ 93 (94)
T cd03445 88 ATASFQ 93 (94)
T ss_pred EEEEEe
Confidence 987763
No 27
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=98.89 E-value=5.4e-08 Score=77.06 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEE
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEG 147 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a 147 (159)
.+.+|||++++++-.++.... .... ....+++++|++|++.| .+.+++++++.||+...+++++++ +|++++.+
T Consensus 9 g~~~~GG~~a~~~~~A~~~~~--~~~~-~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~q--~~~~~~~a 82 (255)
T PF13622_consen 9 GRVVHGGYLAQLLAAAARTHA--PPPG-FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELSQ--DGKVVATA 82 (255)
T ss_dssp TTCE-HHHHHHHHHHHHHHCH--TTTS-SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEEE--TTEEEEEE
T ss_pred CCcChhHHHHHHHHHHHHHhc--cCCC-CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEEE--CCcCEEEE
Confidence 678999988877766555433 1222 47889999999999999 999999999999999999999999 48999999
Q ss_pred EEEEEeecC
Q 031440 148 RHSLFGRQP 156 (159)
Q Consensus 148 ~~t~~i~~~ 156 (159)
+.+|.....
T Consensus 83 ~~~f~~~~~ 91 (255)
T PF13622_consen 83 TASFGRPEP 91 (255)
T ss_dssp EEEEE--TT
T ss_pred EEEEccCcC
Confidence 988776653
No 28
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=98.88 E-value=1.4e-07 Score=69.65 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=75.7
Q ss_pred ecCeEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----cCC-CeEEEEEEEEEEecCCCCCCEE
Q 031440 41 LRGIRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYV----EGL-PMKVSVDMSISFVSTAKVNDEL 115 (159)
Q Consensus 41 l~gl~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~----~~~-~~~vT~~l~i~fl~p~~~g~~l 115 (159)
..|+++.+.+++.+.+..+..| ..|++|+++||-+++++--++=..++. .+. ...|..+-+|+|++|+. ++ +
T Consensus 17 ~Mgi~v~~~~~~~l~~~APL~p-N~N~~~T~FgGSl~slatLaGW~lv~l~l~e~~~~~~IVi~~~~i~Y~~Pv~-~d-~ 93 (144)
T PF09500_consen 17 AMGIKVTSYTGQRLELSAPLAP-NINHHGTMFGGSLYSLATLAGWGLVWLQLKEAGLNGDIVIADSNIRYLKPVT-GD-F 93 (144)
T ss_dssp HTT-EEEEEETTEEEEE--SGG-GB-TTSSB-HHHHHHHHHHHHHHHHHHHHHHHT---EEEEEEEEEEE-S----S---
T ss_pred hcCcEEEEEcCCEEEEeccCCC-CcCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeCceEEcCCCC-CC-c
Confidence 3599999999999999999999 599999999999999997765433322 232 35799999999999996 43 6
Q ss_pred EEEEEEE-------------eEcCcEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031440 116 EITGRVL-------------GQRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 154 (159)
Q Consensus 116 ~~~a~v~-------------~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~ 154 (159)
.++++.- +.||-.+.+++++++ +|+++|+-++.|.+.
T Consensus 94 ~A~~~~~~~~~~~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 94 TARCSLPEPEDWERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp EEEEE-------S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred EEEEeccccchhHHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 7777765 567778889999998 489999999988764
No 29
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=98.85 E-value=2e-07 Score=64.84 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=77.8
Q ss_pred EEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC---------CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcE
Q 031440 58 FKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGY 128 (159)
Q Consensus 58 ~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~ 128 (159)
+++...++++.|.+|.+.+..+++++........+ +...+..+.+++|++|++.|+.|.++.++.+.|++.
T Consensus 2 ~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~~~~~~~s 81 (117)
T TIGR00051 2 VRVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPQSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIEELNGFS 81 (117)
T ss_pred EEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHcCCCHHHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEEEecCcEE
Confidence 46777889999999999999999999775543221 123588899999999999999999999999999999
Q ss_pred EEEEEEEEECCCCcEEEEEEEEE-Eee
Q 031440 129 SGTIVLMRNKATGEVIAEGRHSL-FGR 154 (159)
Q Consensus 129 ~~v~~~i~~~~~g~lvA~a~~t~-~i~ 154 (159)
+..+-+++++ ++.+++.+..+. ++.
T Consensus 82 ~~~~~~i~~~-~~~~~~~~~~~~v~~d 107 (117)
T TIGR00051 82 FVFSQEIFNE-DEALLKAATVIVVCVD 107 (117)
T ss_pred EEEEEEEEeC-CCcEEEeeEEEEEEEE
Confidence 9999999986 566666665533 443
No 30
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=98.83 E-value=1.4e-07 Score=66.88 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=65.8
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcC--cEEEEEEEEEECCCCcEEE
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRG--GYSGTIVLMRNKATGEVIA 145 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr--~~~~v~~~i~~~~~g~lvA 145 (159)
.-.+||..++++++.+... .......+..+.+++|++|+..|+.|.+++++..... +.+.++++++++ +|++++
T Consensus 45 ~~i~~g~~~~~~~~~~~~~---~~~g~~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~~-~g~~v~ 120 (128)
T cd03449 45 GRIAHGMLTASLISAVLGT---LLPGPGTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTNQ-NGEVVI 120 (128)
T ss_pred CceecHHHHHHHHHHHHhc---cCCCceEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEeC-CCCEEE
Confidence 4589999999998765432 1122234667789999999999999999999997766 788899999997 699999
Q ss_pred EEEEEEEe
Q 031440 146 EGRHSLFG 153 (159)
Q Consensus 146 ~a~~t~~i 153 (159)
+|+.+.++
T Consensus 121 ~g~~~~~~ 128 (128)
T cd03449 121 EGEAVVLA 128 (128)
T ss_pred EEEEEEeC
Confidence 99987653
No 31
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=98.63 E-value=3.5e-06 Score=61.56 Aligned_cols=100 Identities=22% Similarity=0.216 Sum_probs=85.1
Q ss_pred EEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC---------CCeEEEEEEEEEEecCCCCCCEEEEEEEEEe
Q 031440 53 LVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG---------LPMKVSVDMSISFVSTAKVNDELEITGRVLG 123 (159)
Q Consensus 53 ~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~---------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~ 123 (159)
....+++|.-..++..|.+|-+....+++.+-.-.+...+ +...++++++++|++|+..|+.+.++.++.+
T Consensus 5 ~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~g~~~~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~v~~~v~~ 84 (137)
T COG0824 5 PFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRALGFDYADLEEGGIAFVVVEAEIDYLRPARLGDVLTVRTRVEE 84 (137)
T ss_pred ceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHcCCCHHHHhhCCcEEEEEEEEeEECCCccCCCEEEEEEEEEe
Confidence 3456778888899999999999999999999776554422 1236999999999999999999999999999
Q ss_pred EcCcEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031440 124 QRGGYSGTIVLMRNKATGEVIAEGRHSLFGR 154 (159)
Q Consensus 124 ~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~ 154 (159)
.|+......-+|+++ ++++|+|+.+....
T Consensus 85 ~~~~s~~~~~~i~~~--~~l~a~~~~~~V~v 113 (137)
T COG0824 85 LGGKSLTLGYEIVNE--DELLATGETTLVCV 113 (137)
T ss_pred ecCeEEEEEEEEEeC--CEEEEEEEEEEEEE
Confidence 999999999999996 49999999775444
No 32
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=98.62 E-value=3.6e-06 Score=59.19 Aligned_cols=93 Identities=22% Similarity=0.169 Sum_probs=70.5
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHhc-------C-CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEE
Q 031440 61 PPRLTDRNGNLANGAIANLVDEVGGAVVYVE-------G-LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTI 132 (159)
Q Consensus 61 ~~~~~N~~G~lHGG~latl~D~a~~~a~~~~-------~-~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~ 132 (159)
.+..++ .|.+|-+....++|.+-...+... . +...++.+.+++|++|++.|+.+.++.++.+.|++.+.+.
T Consensus 2 r~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~g~~~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~~~~s~~~~ 80 (121)
T PF13279_consen 2 RWSDTD-NGHVNNARYLRYFEEAREEFLEELGLYDELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEIGGKSFRFE 80 (121)
T ss_dssp -GGGB--TSSB-HHHHHHHHHHHHHHHHHHHTSCHHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEEESSEEEEE
T ss_pred CHHHcc-CCeEcHHHHHHHHHHHHHHHHHhcchhhHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEECCcEEEEE
Confidence 456688 999999999999999866444211 1 1257899999999999999999999999999999999999
Q ss_pred EEEEECCCCc--EEEEEEEEEEee
Q 031440 133 VLMRNKATGE--VIAEGRHSLFGR 154 (159)
Q Consensus 133 ~~i~~~~~g~--lvA~a~~t~~i~ 154 (159)
-+++++++|+ ++|+|..+....
T Consensus 81 ~~i~~~~~g~~~~~a~~~~~~v~~ 104 (121)
T PF13279_consen 81 QEIFRPADGKGELAATGRTVMVFV 104 (121)
T ss_dssp EEEEECSTTEEEEEEEEEEEEEEE
T ss_pred EEEEEcCCCceEEEEEEEEEEEEE
Confidence 9999843454 499998775544
No 33
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.60 E-value=1.8e-06 Score=75.23 Aligned_cols=102 Identities=22% Similarity=0.288 Sum_probs=87.1
Q ss_pred EEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC--------CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeE
Q 031440 53 LVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG--------LPMKVSVDMSISFVSTAKVNDELEITGRVLGQ 124 (159)
Q Consensus 53 ~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~--------~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~ 124 (159)
..+++++|.+.+++..|.++-+.+..++|.+........+ +...+.++.+++|++|+..|+.|.++.++.+.
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~G~~~~~~~~~~~~vvv~~~i~y~rp~~~gD~v~I~t~v~~~ 424 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLIGVDAAYVAAGHSYYTVETHIRHLGEAKAGQALHVETQLLSG 424 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHcCCCHHHHhcCCcEEEEEEEEEEcccCCCCCEEEEEEEEEec
Confidence 3567999999999999999999999999998775443321 22357899999999999999999999999999
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 125 RGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 125 gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
+++.+..+.++++. +|+++|++..++....
T Consensus 425 ~~~s~~~~~~i~~~-~g~l~A~g~~~~v~vD 454 (495)
T PRK07531 425 DEKRLHLFHTLYDA-GGELIATAEHMLLHVD 454 (495)
T ss_pred CCcEEEEEEEEECC-CCcEEEEEEEEEEEEE
Confidence 99999999999985 7999999998865554
No 34
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=98.59 E-value=1.5e-05 Score=56.68 Aligned_cols=107 Identities=14% Similarity=0.007 Sum_probs=81.1
Q ss_pred EEEEEc-CCEEEEEEEcCCCC--C-CCC---CCccHHHHHHHHHHHHHHHHHhcC----CCeEEEE-EEEEEEecCCCCC
Q 031440 45 RVDRVE-PGLVSCTFKVPPRL--T-DRN---GNLANGAIANLVDEVGGAVVYVEG----LPMKVSV-DMSISFVSTAKVN 112 (159)
Q Consensus 45 ~~~~~~-~g~v~~~~~v~~~~--~-N~~---G~lHGG~latl~D~a~~~a~~~~~----~~~~vT~-~l~i~fl~p~~~g 112 (159)
++.+.+ ++.+..+..+.+++ . .+. ..++|=++.-++..+++....... ....... .-++.|++|+++|
T Consensus 12 ~i~~~~~~~~~~~~~~v~~d~~~~~~hf~~~pi~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~pv~pg 91 (131)
T cd01288 12 RVLELEPGKSIVAIKNVTINEPFFQGHFPGNPIMPGVLIIEALAQAAGILGLKSLEDFEGKLVYFAGIDKARFRKPVVPG 91 (131)
T ss_pred EEEEEcCCCEEEEEEEecCCChhhcCCCCCCCcCCchHHHHHHHHHHHHHhhhcccccCCcEEEEeeecccEEccccCCC
Confidence 455555 46777877777763 2 332 888998888888888776543321 2223333 3589999999999
Q ss_pred CEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 113 DELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 113 ~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+.|.+++++.+.+++...++++++. +|+++++|+.+++.
T Consensus 92 d~l~i~~~v~~~~~~~~~~~~~~~~--~g~~v~~~~~~~~~ 130 (131)
T cd01288 92 DQLILEVELLKLRRGIGKFKGKAYV--DGKLVAEAELMFAI 130 (131)
T ss_pred CEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEE
Confidence 9999999999999999999999976 58999999988765
No 35
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=98.54 E-value=2.7e-05 Score=57.03 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=80.3
Q ss_pred EEEEEcC-CEEEEEEEcCCCC--CC-C---CCCccHHHHHHHHHHHHHHHHHhcC---CCeEEEEEE-EEEEecCCCCCC
Q 031440 45 RVDRVEP-GLVSCTFKVPPRL--TD-R---NGNLANGAIANLVDEVGGAVVYVEG---LPMKVSVDM-SISFVSTAKVND 113 (159)
Q Consensus 45 ~~~~~~~-g~v~~~~~v~~~~--~N-~---~G~lHGG~latl~D~a~~~a~~~~~---~~~~vT~~l-~i~fl~p~~~g~ 113 (159)
++.+.++ +.++....+.+++ .. + ...++|=++.-++..++++.+.... ........+ ++.|++|+++|+
T Consensus 27 ~i~~~~~~~~~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~~~~~~~~~~l~gi~~~kF~~pv~pGd 106 (147)
T PRK00006 27 RVLELEPGKSIVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKSEENKGKLVYFAGIDKARFKRPVVPGD 106 (147)
T ss_pred EEEEEcCCCEEEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcCcCcCCcEEEEeeeeEEEEccccCCCC
Confidence 5556654 5788888777763 32 2 4568887777677777665432221 122233333 799999999999
Q ss_pred EEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 114 ELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 114 ~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
.|.+++++....++.+.++++++. +|+++++|+.++++..
T Consensus 107 ~l~i~~~i~~~~~~~v~~~~~~~~--~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 107 QLILEVELLKQRRGIWKFKGVATV--DGKLVAEAELMFAIRD 146 (147)
T ss_pred EEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEEEEEEEc
Confidence 999999999999999999999986 5999999999988754
No 36
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=98.43 E-value=2e-06 Score=71.68 Aligned_cols=90 Identities=13% Similarity=0.028 Sum_probs=74.1
Q ss_pred EEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEE-EEEEecCCCCCCEEEEEEEEEeEcC
Q 031440 48 RVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDM-SISFVSTAKVNDELEITGRVLGQRG 126 (159)
Q Consensus 48 ~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l-~i~fl~p~~~g~~l~~~a~v~~~gr 126 (159)
-..+..+.......|++.|.+|.+|||.++-++++.+...+...++....+.++ .|+|++|+..|..|.+.+.|.....
T Consensus 194 ~m~dT~v~sseI~~P~~~N~~G~iFGGflMrka~ElA~~~A~~f~~~~p~~rsVD~i~F~~pVdvG~~L~f~s~V~yT~~ 273 (357)
T KOG2763|consen 194 WMKDTKVSSSEICQPEHRNIHGTIFGGFLMRKALELAEITAKLFCKGRPATRSVDDIEFQKPVDVGCVLTFSSFVTYTDN 273 (357)
T ss_pred EeeccceeEEEeecCcccCccCceehHHHHHHHHHHHHHHHHHHcCCCceEEEechhhccCcceeeeEEEEeeEEEEecC
Confidence 345667778889999999999999999999999999998877765543455555 6999999999999999999999999
Q ss_pred cEEEEEEEEEE
Q 031440 127 GYSGTIVLMRN 137 (159)
Q Consensus 127 ~~~~v~~~i~~ 137 (159)
+..++++++.+
T Consensus 274 k~~~vqv~~~~ 284 (357)
T KOG2763|consen 274 KSIYVQVKAVA 284 (357)
T ss_pred CceeEEEEEec
Confidence 85555555543
No 37
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=98.28 E-value=1.6e-05 Score=63.72 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=64.2
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEE
Q 031440 69 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
+.++||.+++.+=.++..++ ... ..--+++.+|++|+..+.+++++.++++.||+....+++++. +|+++.+++
T Consensus 21 ~~~fGG~~~Aqal~Aa~~tv---~~~-~~~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~Q--~g~~~~~a~ 94 (271)
T TIGR00189 21 NRVFGGQVVGQALAAASKTV---PEE-FIPHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAVQ--HGKTIFTLQ 94 (271)
T ss_pred CceEccHHHHHHHHHHHhcC---CCC-CCcceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEEE--CCEEEEEEE
Confidence 68999999988655555444 222 123379999999999989999999999999999999999998 489999998
Q ss_pred EEEE
Q 031440 149 HSLF 152 (159)
Q Consensus 149 ~t~~ 152 (159)
..|-
T Consensus 95 asf~ 98 (271)
T TIGR00189 95 ASFQ 98 (271)
T ss_pred EEcc
Confidence 8776
No 38
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=98.28 E-value=2.6e-05 Score=55.43 Aligned_cols=77 Identities=18% Similarity=0.213 Sum_probs=59.4
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCc-EEEEEEEEEECCCCcEEEEEE
Q 031440 70 NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGG-YSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~-~~~v~~~i~~~~~g~lvA~a~ 148 (159)
.+||...++++..+..-. .+. .....+++++|++|+..|+.|.++++|...... .+.+++++.|+ +|+++.+|+
T Consensus 45 ia~G~~~~~~~~~~~~~~---~~~-~~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq-~G~~v~~g~ 119 (123)
T cd03455 45 YVNGPTLAGLVIRYVTDW---AGP-DARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARNS-EGDHVMAGT 119 (123)
T ss_pred EEEHHHHHHHHHHHHHHc---cCC-cceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEcC-CCCEEEeEE
Confidence 489999999988654321 121 235567899999999999999999999865333 77788888887 799999998
Q ss_pred EEE
Q 031440 149 HSL 151 (159)
Q Consensus 149 ~t~ 151 (159)
++.
T Consensus 120 a~v 122 (123)
T cd03455 120 ATV 122 (123)
T ss_pred EEE
Confidence 764
No 39
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=98.23 E-value=3.7e-05 Score=54.00 Aligned_cols=81 Identities=21% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcC----cEEEEEEEEEECCCCc
Q 031440 67 RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRG----GYSGTIVLMRNKATGE 142 (159)
Q Consensus 67 ~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr----~~~~v~~~i~~~~~g~ 142 (159)
+.-.+||..+++++..+....+. ..........+++|.+|+..|+.|.+++++..... ..+.+++++.++ +|+
T Consensus 41 ~~~i~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n~-~g~ 117 (127)
T cd03441 41 GGRIAHGMLTLSLASGLLVQWLP--GTDGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARNQ-GGE 117 (127)
T ss_pred CCceechHHHHHHHHhhhhhhcc--CcccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEeC-CCC
Confidence 35689999999998876654321 11235677889999999999999999999997754 578889999997 689
Q ss_pred EEEEEEEE
Q 031440 143 VIAEGRHS 150 (159)
Q Consensus 143 lvA~a~~t 150 (159)
++..|+.+
T Consensus 118 ~v~~g~~~ 125 (127)
T cd03441 118 VVLSGEAT 125 (127)
T ss_pred EEEEEEEE
Confidence 88887654
No 40
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=98.11 E-value=0.00015 Score=52.08 Aligned_cols=81 Identities=22% Similarity=0.208 Sum_probs=61.1
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEE
Q 031440 69 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
=.+||-..++++-.+.+. ...+........++++|++|+..|+.|.++.++.........++++++++++|+++.+|+
T Consensus 43 ~iahG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~nq~~g~~V~~g~ 120 (126)
T cd03447 43 TITHGMYTSAAVRALVET--WAADNDRSRVRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARNEETGELVLRGE 120 (126)
T ss_pred CeechhHHHHHHHHHHHH--hccCCCcceEEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEECCCCCEEEEEE
Confidence 458998888888655432 111222345566799999999999999999999987777788899999973389999987
Q ss_pred EEE
Q 031440 149 HSL 151 (159)
Q Consensus 149 ~t~ 151 (159)
++.
T Consensus 121 ~~v 123 (126)
T cd03447 121 AEV 123 (126)
T ss_pred EEE
Confidence 654
No 41
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.09 E-value=5.1e-05 Score=54.70 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=54.3
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCe---EEEEEEEEEEecCCCCCCEEEEEEEEEeEc------CcEEEEEEEEEECCC
Q 031440 70 NLANGAIANLVDEVGGAVVYVEGLPM---KVSVDMSISFVSTAKVNDELEITGRVLGQR------GGYSGTIVLMRNKAT 140 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~~~~~~~~---~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g------r~~~~v~~~i~~~~~ 140 (159)
.+||..+++++..+.. ...+... .....-+++|++|+..|+.|.++++|.... +..+.++.+++|+ +
T Consensus 52 ia~G~~~~a~~~~~~~---~~~~~~~~~~~~~g~~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~nq-~ 127 (140)
T cd03446 52 IAHGLLTLSIATGLLQ---RLGVFERTVVAFYGIDNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVNQ-R 127 (140)
T ss_pred eeccccHHHHHhhHhh---hcccccceeeEEeccceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEcC-C
Confidence 6777777666543321 1111111 111222899999999999999999998653 2367788888987 7
Q ss_pred CcEEEEEEEEEE
Q 031440 141 GEVIAEGRHSLF 152 (159)
Q Consensus 141 g~lvA~a~~t~~ 152 (159)
|+++++++.+..
T Consensus 128 g~~v~~~~~~~l 139 (140)
T cd03446 128 GEVVQSGEMSLL 139 (140)
T ss_pred CCEEEEEEEeee
Confidence 999999987754
No 42
>COG5496 Predicted thioesterase [General function prediction only]
Probab=98.07 E-value=0.00039 Score=50.00 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=76.8
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhc--CCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEE
Q 031440 67 RNGNLANGAIANLVDEVGGAVVYVE--GLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVI 144 (159)
Q Consensus 67 ~~G~lHGG~latl~D~a~~~a~~~~--~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lv 144 (159)
....+--+++..++..++.-++... .+..+|-.+..++.++|+++|..|.+.+++.+..++.+..+.++.+ .|..+
T Consensus 27 ~~~VlATp~mi~~~E~a~~el~~~~Ld~g~ttVG~ev~vrHla~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~~--~~~~I 104 (130)
T COG5496 27 MLNVLATPAMIGFMENASYELLQPYLDNGETTVGTEVLVRHLAATPPGLTVTIGARLEKVEGRKVKFRIIAME--GGDKI 104 (130)
T ss_pred ccceeehHHHHHHHHHHHHHHHHhhCcCCcceeeEEEEeeeccCCCCCCeEEEEEEEEEEeccEEEEEEEEee--CCcEE
Confidence 3567778999999999999777553 2345788899999999999999999999999999999999999985 59999
Q ss_pred EEEEEEEEeecCCC
Q 031440 145 AEGRHSLFGRQPSK 158 (159)
Q Consensus 145 A~a~~t~~i~~~~~ 158 (159)
.+|+++=+|.|.-|
T Consensus 105 g~g~h~R~iv~~~k 118 (130)
T COG5496 105 GEGTHTRVIVPREK 118 (130)
T ss_pred eeeEEEEEEecHHH
Confidence 99999988877543
No 43
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=98.07 E-value=4.8e-05 Score=55.22 Aligned_cols=84 Identities=15% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCe-EEEEEEEEEEecCCCCCCEEEEEEEEEeEcC-------cEEEEEEEEEECCC
Q 031440 69 GNLANGAIANLVDEVGGAVVYVEGLPM-KVSVDMSISFVSTAKVNDELEITGRVLGQRG-------GYSGTIVLMRNKAT 140 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~~~~~~-~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr-------~~~~v~~~i~~~~~ 140 (159)
-.+||..+.+++-. .......... ......+++|++|+..|+.|.++++|...-. ..+.+++++.++ +
T Consensus 54 ~ia~G~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~ 129 (146)
T cd03451 54 RLVNSLFTLSLALG---LSVNDTSLTAVANLGYDEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYNQ-D 129 (146)
T ss_pred ccccHHhHHHHHhh---heehhccccceeccCccEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEECC-C
Confidence 46788887766532 1111111111 1122238999999999999999999986542 488889999987 7
Q ss_pred CcEEEEEEEEEEeecC
Q 031440 141 GEVIAEGRHSLFGRQP 156 (159)
Q Consensus 141 g~lvA~a~~t~~i~~~ 156 (159)
|+++++++.+..+...
T Consensus 130 g~~V~~~~~~~~~~~~ 145 (146)
T cd03451 130 GEPVLSFERTALVPKR 145 (146)
T ss_pred CCEEEEEEehhEEEcC
Confidence 9999999988877643
No 44
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=98.06 E-value=0.00015 Score=51.84 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=57.7
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeE----cCcEEEEEEEEEECCCCcEE
Q 031440 69 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQ----RGGYSGTIVLMRNKATGEVI 144 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~----gr~~~~v~~~i~~~~~g~lv 144 (159)
=.+||-.+++++.....- ..... ....+++++|++|+..|+.|.++++|... ++..+.++.+++|+ +|+++
T Consensus 45 ~i~~G~~~~~~~~~~~~~---~~~~~-~~i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~nq-~g~~v 119 (127)
T cd03453 45 VIAHGMLTMGLLGRLVTD---WVGDP-GRVVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATDQ-AGGKK 119 (127)
T ss_pred cEecHHHHHHHHHHHHHH---HcCCc-cceEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEEc-CCCEE
Confidence 368898888888543322 12212 23367889999999999999999999743 44688899999998 79999
Q ss_pred EEEEEE
Q 031440 145 AEGRHS 150 (159)
Q Consensus 145 A~a~~t 150 (159)
.+|+++
T Consensus 120 ~~g~a~ 125 (127)
T cd03453 120 VLGRAI 125 (127)
T ss_pred EEEEEE
Confidence 988765
No 45
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=98.06 E-value=0.0013 Score=46.36 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=75.7
Q ss_pred EEEEEcC-CEEEEEEEcCCCCC---CCC---CCccHHHHHHHHHHHHHHHHHhcCC------CeEEEEE-EEEEEecCCC
Q 031440 45 RVDRVEP-GLVSCTFKVPPRLT---DRN---GNLANGAIANLVDEVGGAVVYVEGL------PMKVSVD-MSISFVSTAK 110 (159)
Q Consensus 45 ~~~~~~~-g~v~~~~~v~~~~~---N~~---G~lHGG~latl~D~a~~~a~~~~~~------~~~vT~~-l~i~fl~p~~ 110 (159)
++.+.++ +.++.+..+.+++. +++ +.+=|=++.-++-.+++..+...+. ....... -++.|++|+.
T Consensus 11 ~i~~~~~~~~~~~~~~i~~~~~~~~~hfp~~p~lPg~~~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kf~~~v~ 90 (131)
T cd00493 11 RVLEIDPGGRIVAEKNVTPNEPFFQGHFPGDPVMPGVLGIEAMAQAAAALAGLLGLGKGNPPRLGYLAGVRKVKFRGPVL 90 (131)
T ss_pred EEEEEcCCCEEEEEEecCCCChhhcccCCCCCCCCcHHHHHHHHHHHHHHHHhcccccccCCcEEEEEEcceeEECCCcC
Confidence 5667777 78888888888653 222 5666666666666666654433211 2233333 4899999999
Q ss_pred CCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEE
Q 031440 111 VNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRH 149 (159)
Q Consensus 111 ~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~ 149 (159)
.|+.|.++.++...+...+.++++++. +|+++++++.
T Consensus 91 pgd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~v~~~~~ 127 (131)
T cd00493 91 PGDTLTLEVELLKVRRGLGKFDGRAYV--DGKLVAEAEL 127 (131)
T ss_pred CCCEEEEEEEEEEeeCCEEEEEEEEEE--CCEEEEEEEE
Confidence 999999999999999899999999998 4999999983
No 46
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=97.95 E-value=0.00015 Score=52.37 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=44.4
Q ss_pred EEEEEecCCCCCCEEEEEEEEEeE-------cCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 101 MSISFVSTAKVNDELEITGRVLGQ-------RGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 101 l~i~fl~p~~~g~~l~~~a~v~~~-------gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
.+++|++|+..|+.|.++++|... ++..+.+++++.|+ +|+++++++.+..+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~nq-~g~~v~~~~~~~~~ 139 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLNQ-RGEVVLTFEATVLV 139 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEcC-CCCEEEEEEehhee
Confidence 489999999999999999999855 33478889999997 79999999887654
No 47
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=97.94 E-value=0.0019 Score=46.71 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=74.7
Q ss_pred EEEEEc-CCEEEEEEEcCCCCC---CC---CCCccHHHHHHHHHHHHHHHH-HhcC---C--CeEEEEEE-EEEEecCCC
Q 031440 45 RVDRVE-PGLVSCTFKVPPRLT---DR---NGNLANGAIANLVDEVGGAVV-YVEG---L--PMKVSVDM-SISFVSTAK 110 (159)
Q Consensus 45 ~~~~~~-~g~v~~~~~v~~~~~---N~---~G~lHGG~latl~D~a~~~a~-~~~~---~--~~~vT~~l-~i~fl~p~~ 110 (159)
++.+.+ ++.++.+..+++++- ++ ...+=|=++.-++-.+++..+ .... . .......+ ++.|++|+.
T Consensus 20 ~i~~~~~~~~~~~~~~v~~~~~~f~gHFp~~pv~Pg~l~iE~~aQ~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~ 99 (140)
T TIGR01750 20 RILELDPGKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 (140)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCeecCCCcCcCcChHHHHHHHHHHHHHHHheccccccCCCCcEEEEeecceeEECCccC
Confidence 566666 467888888888642 32 334555555555555554322 1111 1 22344443 899999999
Q ss_pred CCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 031440 111 VNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLF 152 (159)
Q Consensus 111 ~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~ 152 (159)
+|+.|++++++.+..++...++++++. +|+++++|+.++.
T Consensus 100 pGd~l~i~~~i~~~~~~~~~~~~~~~~--~g~~va~~~~~~~ 139 (140)
T TIGR01750 100 PGDQLILHAEFLKKRRKIGKFKGEATV--DGKVVAEAEITFA 139 (140)
T ss_pred CCCEEEEEEEEEEccCCEEEEEEEEEE--CCEEEEEEEEEEE
Confidence 999999999999999999999999976 5999999998764
No 48
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=97.93 E-value=0.0034 Score=45.71 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=76.3
Q ss_pred EEEEEcCCEEEEEEEcCCCC--CC-CCCCccHHHHHHHHHHHHHHHH-H-h--cCC--CeEEEEEE-EEEEecCCCC-CC
Q 031440 45 RVDRVEPGLVSCTFKVPPRL--TD-RNGNLANGAIANLVDEVGGAVV-Y-V--EGL--PMKVSVDM-SISFVSTAKV-ND 113 (159)
Q Consensus 45 ~~~~~~~g~v~~~~~v~~~~--~N-~~G~lHGG~latl~D~a~~~a~-~-~--~~~--~~~vT~~l-~i~fl~p~~~-g~ 113 (159)
++.+.+++.++....+..+. .. +.+.+-|=.+.-.+=.+++... . . .+. +...-..+ +++|.+|+.. |+
T Consensus 18 ~v~~~~~~~~~~~~~v~~~~~f~~~~~~~~P~~l~iE~mAQa~a~~~g~~~~~~~~~~~~g~l~~i~~~~f~~~v~p~Gd 97 (138)
T cd01289 18 RVISWDDDSIHCRATVHPDPLFPLRAHGRLPAWVGIEYMAQAIAAHGGLLARQQGNPPRPGFLLGSRKYEAHVDRFDLGS 97 (138)
T ss_pred EEEEEcCCEEEEEEEeCCCCcCccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEEEEEcceeCCCC
Confidence 55566677888777777653 22 3366777666666666655432 1 1 221 22334443 8999999755 99
Q ss_pred EEEEEEEEEeEcC-cEEEEEEEEEECCCCcEEEEEEEEEEee
Q 031440 114 ELEITGRVLGQRG-GYSGTIVLMRNKATGEVIAEGRHSLFGR 154 (159)
Q Consensus 114 ~l~~~a~v~~~gr-~~~~v~~~i~~~~~g~lvA~a~~t~~i~ 154 (159)
.+.++++..+..+ .....+++++. +|+++|+|+.+.|++
T Consensus 98 ~l~i~~~~~~~~~~~~~~~~~~~~v--~~~~va~a~l~~~~p 137 (138)
T cd01289 98 TLLIVVAELLQGDSGLGVFECTIED--QGGVLASGRLNVYQP 137 (138)
T ss_pred eeEEEeeeeeeCCCcEEEEEEEEEE--CCEEEEEEEEEEEcC
Confidence 9999999999885 99999999998 489999999888765
No 49
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.91 E-value=0.00019 Score=58.47 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=65.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEE
Q 031440 67 RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAE 146 (159)
Q Consensus 67 ~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~ 146 (159)
....++||.+++.+=.|+...+ ... -..-+++.+|++|+..+.+|+.+.+.++.||+.++.++++++ +|+++.+
T Consensus 30 ~~r~~fGGqv~AQal~AA~~tv---~~~-~~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~Q--~g~~if~ 103 (286)
T PRK10526 30 GLRQVFGGQVVGQALYAAKETV---PEE-RLVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAIQ--NGKPIFY 103 (286)
T ss_pred CCCceechHHHHHHHHHHHhcC---CCC-CCceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEEE--CCEEEEE
Confidence 3578999998887655444433 222 245678999999999999999999999999999999999999 4899999
Q ss_pred EEEEEEe
Q 031440 147 GRHSLFG 153 (159)
Q Consensus 147 a~~t~~i 153 (159)
++.+|-.
T Consensus 104 ~~~sF~~ 110 (286)
T PRK10526 104 MTASFQA 110 (286)
T ss_pred EEEEecc
Confidence 9888764
No 50
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=97.90 E-value=0.00044 Score=48.07 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=68.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHh-cCC-----CeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCc
Q 031440 69 GNLANGAIANLVDEVGGAVVYV-EGL-----PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGE 142 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~-~~~-----~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~ 142 (159)
-.+|-.+++-+.|......+.. .+. .+..|.+-+|+|.+|....+++..+.+..+.+......++++|++ +|+
T Consensus 15 ~~~~~a~lA~~SD~~~l~~~~~~~~~~~~~~~~~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~~-~G~ 93 (104)
T cd03444 15 PRLHAAALAYLSDSLLLGTALRPHGLPLFDASASASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFTR-DGE 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcccCcceEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEECC-CCC
Confidence 3688899999999988755443 332 246899999999999998899999999999999999999999998 799
Q ss_pred EEEEEEEE
Q 031440 143 VIAEGRHS 150 (159)
Q Consensus 143 lvA~a~~t 150 (159)
++|+..-.
T Consensus 94 LvAs~~Q~ 101 (104)
T cd03444 94 LVASVAQE 101 (104)
T ss_pred EEEEEEEe
Confidence 99998754
No 51
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=97.88 E-value=0.00026 Score=52.98 Aligned_cols=60 Identities=25% Similarity=0.225 Sum_probs=50.5
Q ss_pred EEEEEEEEEEecCCCCCCEEEEEEEEEeE----cCcEEEEEEEEEECCCCcEEEEEEEEEEeecC
Q 031440 96 KVSVDMSISFVSTAKVNDELEITGRVLGQ----RGGYSGTIVLMRNKATGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 96 ~vT~~l~i~fl~p~~~g~~l~~~a~v~~~----gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~~ 156 (159)
.+-.+.+++|++|+..||.|.++.+|... ++.++..+++++|+ +|++|.+++.++++...
T Consensus 84 ~~~~~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~Nq-~Ge~V~~~~~~~~~r~~ 147 (159)
T PRK13692 84 IVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNE-EGDVVQETYTTLAGRAG 147 (159)
T ss_pred eEeeeeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEcC-CCCEEEEEEEEEEEecC
Confidence 34455689999999999999999999733 44688999999997 79999999999988753
No 52
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=97.85 E-value=0.00037 Score=50.88 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=57.2
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCeEEEEE---EEEEEecCCCCCCEEEEEEEEEeEc--C----cEEEEEEEEEECCC
Q 031440 70 NLANGAIANLVDEVGGAVVYVEGLPMKVSVD---MSISFVSTAKVNDELEITGRVLGQR--G----GYSGTIVLMRNKAT 140 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~~~~~~~~~vT~~---l~i~fl~p~~~g~~l~~~a~v~~~g--r----~~~~v~~~i~~~~~ 140 (159)
.+||...++++..... ..... ....+ -+++|++|+..|+.|.++.+|.... + ..+.+++++.|+ +
T Consensus 52 ia~G~l~~s~~~~l~~----~~~~~-~~~~~~g~~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~nq-~ 125 (142)
T cd03452 52 VAHGYFVLSAAAGLFV----DPAPG-PVLANYGLENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTNQ-N 125 (142)
T ss_pred eecHHHHHHHHhhhCc----cCCcc-cEEEEeccceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEec-C
Confidence 6788877777765321 11111 22222 3999999999999999999998652 1 377889999987 7
Q ss_pred CcEEEEEEEEEEee
Q 031440 141 GEVIAEGRHSLFGR 154 (159)
Q Consensus 141 g~lvA~a~~t~~i~ 154 (159)
|+++.+++.+.++.
T Consensus 126 g~~V~~~~~~~~~~ 139 (142)
T cd03452 126 GELVASYDILTLVA 139 (142)
T ss_pred CCEEEEEEehHeeE
Confidence 99999999876654
No 53
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=97.80 E-value=0.00082 Score=50.68 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=49.0
Q ss_pred EEEEEEEEEecCCCCCCEEEEEEEEEeE----cCcEEEEEEEEEECCCCcEEEEEEEEEEeecC
Q 031440 97 VSVDMSISFVSTAKVNDELEITGRVLGQ----RGGYSGTIVLMRNKATGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 97 vT~~l~i~fl~p~~~g~~l~~~a~v~~~----gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~~ 156 (159)
+-.+-++.|++|+..||.|.++.+|... ++..+..+.++.|+ +|++++++..++++.+.
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~NQ-~Ge~V~~~~~~~~~~~~ 147 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTND-DGELVMEAYTTLMGQQG 147 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEECC-CCCEEEEEEEEEEEecC
Confidence 3344588899999999999999999854 44578889999998 79999999998887754
No 54
>PLN02370 acyl-ACP thioesterase
Probab=97.73 E-value=0.0025 Score=54.77 Aligned_cols=102 Identities=14% Similarity=0.071 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcC---------------CCeEEEEEEEEEEecCCCCCCEEEEE
Q 031440 54 VSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEG---------------LPMKVSVDMSISFVSTAKVNDELEIT 118 (159)
Q Consensus 54 v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~---------------~~~~vT~~l~i~fl~p~~~g~~l~~~ 118 (159)
..-.+.+....++..|.+.=..++.++-+++...+...+ +..-|...++|+|.+|+..|+.|+++
T Consensus 140 y~~~f~Ir~yEvD~~g~lsl~~L~n~lQd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~ 219 (419)
T PLN02370 140 FRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVD 219 (419)
T ss_pred EEEEEEEeeEEECCCCCCCHHHHHHHHHHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEE
Confidence 345778888889999999999999999998886653322 11348888999999999999999999
Q ss_pred EEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 119 GRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 119 a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
.++...++..+.-+.+|++.++|++++.|+.++....
T Consensus 220 Twv~~~~k~~~~Rdf~I~D~~~Ge~la~A~SvWV~mD 256 (419)
T PLN02370 220 TWVSASGKNGMRRDWLVRDCKTGETLTRASSVWVMMN 256 (419)
T ss_pred EEEeeCCCCEEEEEEEEEECCCCeEEEEEEEEEEEEE
Confidence 9999999999999999998657999999999877664
No 55
>PLN02868 acyl-CoA thioesterase family protein
Probab=97.72 E-value=0.0003 Score=59.99 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=70.9
Q ss_pred EEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeE
Q 031440 45 RVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQ 124 (159)
Q Consensus 45 ~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~ 124 (159)
.++..+++.- +-...|.. +..+.++||.+++.+=.++..++ ... ..-.+++.+|++|...+.+++.+.++++.
T Consensus 137 ~l~~~~~~~f--~~~~~~~~-~~~~~~fGG~~~aqal~Aa~~~~---~~~-~~~~s~~~~Fl~~~~~~~pv~~~V~~lr~ 209 (413)
T PLN02868 137 HLEPLEVDIF--RGITLPDA-PTFGKVFGGQLVGQALAAASKTV---DPL-KLVHSLHAYFLLVGDINLPIIYQVERIRD 209 (413)
T ss_pred CcEeccCCeE--ECCcCCCC-cccccccchHHHHHHHHHHHccC---CCC-CCceEeeeeecCCCCCCCCEEEEEEEEcC
Confidence 4444455442 22333332 23588999999987544443332 222 23457899999999988889999999999
Q ss_pred cCcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 125 RGGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 125 gr~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
||+.+..+++++. +|+++.++..+|-.
T Consensus 210 Grs~~~r~v~~~Q--~g~~~~~~~~sf~~ 236 (413)
T PLN02868 210 GHNFATRRVDAIQ--KGKVIFTLFASFQK 236 (413)
T ss_pred CCceEeeEEEEEE--CCeeEEEEeecccc
Confidence 9999999999998 48999888877654
No 56
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=97.72 E-value=0.00093 Score=58.05 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=61.9
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeE--cCcEEEEEEEEEECCCCcEEEEE
Q 031440 70 NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQ--RGGYSGTIVLMRNKATGEVIAEG 147 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~--gr~~~~v~~~i~~~~~g~lvA~a 147 (159)
.+||-.+++++..+.+. .......+....+++|.+|+..|++|.++.++... ++..+.++++++|+ +|+++.++
T Consensus 60 IahG~l~~s~~~~l~~~---~~~g~~~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~nq-~G~~V~~g 135 (466)
T PRK08190 60 VAHGMWGGALISAVLGT---RLPGPGTIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTNQ-DGEVVITG 135 (466)
T ss_pred eeCHHHHHHHHHHHHhh---hCCCcceEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEeC-CCCEEEEE
Confidence 68888888876543221 12222346667899999999999999999999744 55678888999997 79999999
Q ss_pred EEEEEeec
Q 031440 148 RHSLFGRQ 155 (159)
Q Consensus 148 ~~t~~i~~ 155 (159)
+.+..+..
T Consensus 136 ~~~~l~~~ 143 (466)
T PRK08190 136 TAEVIAPT 143 (466)
T ss_pred EEEeeccc
Confidence 98876654
No 57
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=97.64 E-value=0.0072 Score=52.55 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=78.0
Q ss_pred EEEEEcCCEEEEEEEcCCCC--C-C---CCCCccHHHHHHHHHHHHHHHHHhc-CC---CeEEEEEE-EEEEecCCCCCC
Q 031440 45 RVDRVEPGLVSCTFKVPPRL--T-D---RNGNLANGAIANLVDEVGGAVVYVE-GL---PMKVSVDM-SISFVSTAKVND 113 (159)
Q Consensus 45 ~~~~~~~g~v~~~~~v~~~~--~-N---~~G~lHGG~latl~D~a~~~a~~~~-~~---~~~vT~~l-~i~fl~p~~~g~ 113 (159)
++.+.+++.++....+.++. . + ....++|=++.-++=.++++.+... +. ....-..+ ++.|++|+.+|+
T Consensus 341 rIl~~e~~~i~a~k~Vs~De~ff~GHFPg~PI~PGVL~IEaMAQaagil~~~~~~~~~g~lg~LlgI~kvKF~~PV~PGD 420 (464)
T PRK13188 341 KIIELGDTKIVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAMAQTGGILVLNTVPDPENYSTYFMKIDKVKFRQKVVPGD 420 (464)
T ss_pred EEeEEeCCEEEEEEEcCCCcHHhhccCCCCCccccHHHHHHHHHHHHHHHhhccCCCCCceEEEEeccEEEEcCCCCCCC
Confidence 44555577788877777752 3 3 3567888777766666666544322 21 22334444 899999999999
Q ss_pred EEEEEEEEEe-EcCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 114 ELEITGRVLG-QRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 114 ~l~~~a~v~~-~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
.|.+++++++ ..+..+..+++++. +|+++++|+.++++..
T Consensus 421 tL~I~veI~~~~~~giv~f~g~~~v--dGelVaeael~~~v~~ 461 (464)
T PRK13188 421 TLIFKVELLSPIRRGICQMQGKAYV--NGKLVCEAELMAQIVK 461 (464)
T ss_pred EEEEEEEEEEEecCCEEEEEEEEEE--CCEEEEEEEEEEEEec
Confidence 9999999987 55678889999995 6999999998887753
No 58
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=97.64 E-value=0.0079 Score=43.45 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=61.8
Q ss_pred EEEEEEcCCCCC------CCCCCccHHHHHHHHHHHHHHHHHhcC----CC-----eEEEEEEEEEEecCCCCCC-EEEE
Q 031440 54 VSCTFKVPPRLT------DRNGNLANGAIANLVDEVGGAVVYVEG----LP-----MKVSVDMSISFVSTAKVND-ELEI 117 (159)
Q Consensus 54 v~~~~~v~~~~~------N~~G~lHGG~latl~D~a~~~a~~~~~----~~-----~~vT~~l~i~fl~p~~~g~-~l~~ 117 (159)
++.+..+.+++- .....+=|=++.-.+=.++++.+.... .. .....--++.|++|+.+|+ .|.+
T Consensus 27 ~~a~~~v~~~~~~f~gHFp~~Pv~PGvl~iE~~aQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~ 106 (138)
T PF07977_consen 27 IVARKNVTPDEPFFDGHFPGDPVMPGVLLIEAMAQAAGFLAGYSGLAEGTGEARKVPFLAGIRNVKFRGPVYPGDKTLRI 106 (138)
T ss_dssp EEEEEEE-TTSGGGGCSTTTS--B-HHHHHHHHHHHHHHHHHHHCCSSSCCCCCEEEEEEEEEEEEE-S-B-TTE-EEEE
T ss_pred EEEEEEeCCCCCEEEcCCCCCCCCCeEhHHHHHHHHHHhHhhhccccccCCCcceEEEeccccEEEECccEeCCCcEEEE
Confidence 888888887643 235667777666555555554443321 11 1223334899999999999 9999
Q ss_pred EEEEEe---EcCcEEEEEEEEEECCCCcEEEEEE
Q 031440 118 TGRVLG---QRGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 118 ~a~v~~---~gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
++++.+ ..+..+..+++++. +|+.++++.
T Consensus 107 ~v~i~~~~~~~~~~~~~~~~~~v--dg~~v~~~~ 138 (138)
T PF07977_consen 107 EVEIKKIRRREGGMAIFDGTAYV--DGELVAEAE 138 (138)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEE--TTEEEEEEE
T ss_pred EEEEEEeecccCCEEEEEEEEEE--CCEEEEEEC
Confidence 999999 89999999999999 599999874
No 59
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=97.45 E-value=0.0016 Score=51.34 Aligned_cols=78 Identities=18% Similarity=0.131 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHhcCC---CeEEEEEEEEEE-ecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEE
Q 031440 75 AIANLVDEVGGAVVYVEGL---PMKVSVDMSISF-VSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHS 150 (159)
Q Consensus 75 ~latl~D~a~~~a~~~~~~---~~~vT~~l~i~f-l~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t 150 (159)
.++.+.|............ ...+|++++|+| ..|...++++.++++....+...+..++++|++ +|++||+++..
T Consensus 174 ~l~~~~D~~~~~~~~~~~~~~~~~~~tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d~-~G~lvA~~~Q~ 252 (255)
T PF13622_consen 174 ALAFLSDAFPPATLRAFSGPEWWFPATLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWDE-DGRLVASSRQE 252 (255)
T ss_dssp HHHHHCTCCHHHHHHCHTSS--B-EEEEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEET-TS-EEEEEEEE
T ss_pred HHHHHHHhcchhhccccCCccccccccceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEECC-CCCEEEEEEEE
Confidence 3888888874444433333 345699999997 446666899999999999999999999999998 79999999876
Q ss_pred EEe
Q 031440 151 LFG 153 (159)
Q Consensus 151 ~~i 153 (159)
.+|
T Consensus 253 ~lv 255 (255)
T PF13622_consen 253 ALV 255 (255)
T ss_dssp EE-
T ss_pred eeC
Confidence 553
No 60
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=97.38 E-value=0.014 Score=46.78 Aligned_cols=101 Identities=17% Similarity=0.111 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCC---------------CeEEEEEEEEEEecCCCCCCEEEEEE
Q 031440 55 SCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGL---------------PMKVSVDMSISFVSTAKVNDELEITG 119 (159)
Q Consensus 55 ~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~---------------~~~vT~~l~i~fl~p~~~g~~l~~~a 119 (159)
.-.+.+....++..|.+.=-.++.++-++++..+...+. ..=|.....+++.++...|+.|.++.
T Consensus 5 ~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~lG~~~~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P~~~e~i~i~T 84 (261)
T PF01643_consen 5 EKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESLGFGMDYFGSTPELKKQGLAWVLSRYQIEIHRYPRWGEKITIET 84 (261)
T ss_dssp EEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHTT-SHHH------HHCTTEEEEEEEEEEEESS--BTT-EEEEEE
T ss_pred EEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHhCCCcccchhhhhHhhcCcEEEEEEEEEEEEecCCCCCEEEEEE
Confidence 346788888999999999999999999998866644331 12377778999999999999999999
Q ss_pred EEEeEcCcEEEEEEEEEE-CCCCcEEEEEEEEEEeecC
Q 031440 120 RVLGQRGGYSGTIVLMRN-KATGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 120 ~v~~~gr~~~~v~~~i~~-~~~g~lvA~a~~t~~i~~~ 156 (159)
++...++-.+.-+.++++ + +|+++++|++.+.+...
T Consensus 85 w~~~~~~~~~~R~f~i~d~~-~G~~l~~a~s~WvliD~ 121 (261)
T PF01643_consen 85 WPSGFKRFFAYRDFEIYDAE-DGELLARATSIWVLIDL 121 (261)
T ss_dssp EEEEE-SSEEEEEEEEE--T-TS-EEEEEEEEEEEEET
T ss_pred EeccCCCcEEEEEEEEEECC-CCcEEEEEEEEEEEEEh
Confidence 999999999999999999 6 79999999998877643
No 61
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=97.36 E-value=0.0033 Score=50.30 Aligned_cols=81 Identities=21% Similarity=0.108 Sum_probs=64.5
Q ss_pred CCccHHHHHHHHHHHHH-HHHHhcCC-----CeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCc
Q 031440 69 GNLANGAIANLVDEVGG-AVVYVEGL-----PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGE 142 (159)
Q Consensus 69 G~lHGG~latl~D~a~~-~a~~~~~~-----~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~ 142 (159)
-.+|=-.++.+.|..+. .++..+.. ....+++.+|+|+++.+.++++..+.+....+......++++||+ +|+
T Consensus 181 ~~~~~~~la~~sD~~~l~~~l~~~~~~~~~~~~~aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d~-~G~ 259 (271)
T TIGR00189 181 PRLHQCALAYLSDLTLLPTALNPHNKAGFDGSMAASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFTR-DGV 259 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCcEEEeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEECC-CCC
Confidence 34577899999998432 33333322 235789999999999888999999999999998889999999997 799
Q ss_pred EEEEEEEE
Q 031440 143 VIAEGRHS 150 (159)
Q Consensus 143 lvA~a~~t 150 (159)
+||+..-.
T Consensus 260 lvAs~~Qe 267 (271)
T TIGR00189 260 LIASTVQE 267 (271)
T ss_pred EEEEEEee
Confidence 99998754
No 62
>cd01287 FabA FabA, beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase: Bacterial protein of the type II, fatty acid synthase system that binds ACP and catalyzes both dehydration and isomerization reactions, apparently in the same active site. The FabA structure is a homodimer with two independent active sites located at the dimer interface. Each active site is tunnel-shaped and completely inaccessible to solvent. No metal ions or cofactors are required for ligand binding or catalysis.
Probab=97.29 E-value=0.04 Score=40.83 Aligned_cols=97 Identities=8% Similarity=0.003 Sum_probs=70.2
Q ss_pred CEEEEEEEcCCC--CCC----CCCCccHHHHHHHHHHHHHHHHHhcCC-----C---eEEEEE-EEEEEecCCCCCC-EE
Q 031440 52 GLVSCTFKVPPR--LTD----RNGNLANGAIANLVDEVGGAVVYVEGL-----P---MKVSVD-MSISFVSTAKVND-EL 115 (159)
Q Consensus 52 g~v~~~~~v~~~--~~N----~~G~lHGG~latl~D~a~~~a~~~~~~-----~---~~vT~~-l~i~fl~p~~~g~-~l 115 (159)
|+++.+..++++ +.. ....+-|=.+.-.+=.++++.+...+. . ..+... -+..|.+|+.+|+ .|
T Consensus 27 g~i~a~k~v~~~e~ff~gHFp~~pvmPG~L~iEamaQ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~kfr~~v~Pgd~~l 106 (150)
T cd01287 27 GYLRAEKDIDPDDWFFPCHFHGDPVMPGSLGLEAMIQLLQFYLIWLGLGTGVDNPRFQGAPGGPGEWKYRGQITPHNKKV 106 (150)
T ss_pred cEEEEEEEcCCCCceEcCCCCCCCcCchHHHHHHHHHHHHHHHhhcccccccCcccceeEeccceEEEECccCcCCCEEE
Confidence 468888888875 333 356677777776776766655433221 1 122222 3799999999998 89
Q ss_pred EEEEEEEeEcC----cEEEEEEEEEECCCCcEEEEEEEE
Q 031440 116 EITGRVLGQRG----GYSGTIVLMRNKATGEVIAEGRHS 150 (159)
Q Consensus 116 ~~~a~v~~~gr----~~~~v~~~i~~~~~g~lvA~a~~t 150 (159)
.+++++.+.++ +.+.+++.++. +|+++++++..
T Consensus 107 ~~e~~i~~~~~~~~~~~~~~~~~~~v--dg~~v~~a~~~ 143 (150)
T cd01287 107 TYEVHIKEVGRDGPRPYIIADASLWV--DGLRIYEAKDI 143 (150)
T ss_pred EEEEEEEEEEccCCccEEEEEEEEEE--CCEEEEEEEcc
Confidence 99999999874 89999999998 59999999754
No 63
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=97.14 E-value=0.0098 Score=48.48 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=68.4
Q ss_pred CCccHHHHHHHHHHHHH-HHHHhcCC------CeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCC
Q 031440 69 GNLANGAIANLVDEVGG-AVVYVEGL------PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATG 141 (159)
Q Consensus 69 G~lHGG~latl~D~a~~-~a~~~~~~------~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g 141 (159)
..+|=-+++-+.|.-.. .++..++. ....+++-+|.|++|.+.++++..+.+....+....+.++++|++ +|
T Consensus 192 ~~~~~~~lay~sD~~~l~~al~~~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~L~~~~s~~a~~gr~~~~g~i~~~-~G 270 (286)
T PRK10526 192 LRVHQYLLGYASDLNFLPVALQPHGIGFLEPGMQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQ-DG 270 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccCCcceEEeeeEeEEEeCCCCCCceEEEEEECCcccCCceEEEEEEECC-CC
Confidence 35888888877775443 33333322 135688889999999999999999999999999999999999998 79
Q ss_pred cEEEEEEEEEEeecC
Q 031440 142 EVIAEGRHSLFGRQP 156 (159)
Q Consensus 142 ~lvA~a~~t~~i~~~ 156 (159)
+++|+..-.-.++..
T Consensus 271 ~LvAs~~Qegl~r~~ 285 (286)
T PRK10526 271 VLVASTVQEGVMRNH 285 (286)
T ss_pred CEEEEEEeeEEEEec
Confidence 999999877666543
No 64
>KOG2763 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=97.08 E-value=0.012 Score=49.42 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=76.7
Q ss_pred cCCCCCCCCCCccHH-HHHHHHHHHHHHHHHhcCC---------CeEEEEEE-EEEEecCCCCC-CEEEEEEEEEeEcCc
Q 031440 60 VPPRLTDRNGNLANG-AIANLVDEVGGAVVYVEGL---------PMKVSVDM-SISFVSTAKVN-DELEITGRVLGQRGG 127 (159)
Q Consensus 60 v~~~~~N~~G~lHGG-~latl~D~a~~~a~~~~~~---------~~~vT~~l-~i~fl~p~~~g-~~l~~~a~v~~~gr~ 127 (159)
+.|.+.|.-|..++| -+.-|+|++..+|.+.++. -..||++. .|+|.+|...| ..+.+.|.|...|++
T Consensus 15 ~lp~~a~~s~~~~~~prigk~lE~ld~~a~~~hc~~~~~~~~~p~~~VtAsV~~i~f~~~~~~~~~d~i~~a~Vt~a~~s 94 (357)
T KOG2763|consen 15 VLPPRANHSGNTFVGPRIGKILEDLDALAVYRHCSEAEEGATLPRTIVTASVDRIDFEKPSEVGQVDIIIVAKVTWAGKS 94 (357)
T ss_pred CCCCccccccceecchHHHHHHHHhhhhhheeecccccccCccceEEEEeeEEEEEeeccccccceeEEEEEEEEecccc
Confidence 667778899999999 6999999999877654321 13688887 79999987777 557788999999999
Q ss_pred EEEEEEEEEEC--C--CCcEEEEEEEEEEeec
Q 031440 128 YSGTIVLMRNK--A--TGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 128 ~~~v~~~i~~~--~--~g~lvA~a~~t~~i~~ 155 (159)
++.+.+.+..+ . .-.++.+|.++|...+
T Consensus 95 SMEv~i~V~q~~~~~~~~~~~~kA~f~fVard 126 (357)
T KOG2763|consen 95 SMEVSIYVMQEDLATGEKSLVLKATFTFVARD 126 (357)
T ss_pred ceEEEEEEEEehhccchhhheeeeEEEEEEec
Confidence 99999998872 1 2368999999888774
No 65
>COG0764 FabA 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]
Probab=97.03 E-value=0.078 Score=39.29 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=69.8
Q ss_pred CEEEEEEEcCCC--CCC---CCCCccHHHHHH-HHHHHHHHHHHhcCC----Ce-EEEEEEEEEEecCCCCCCEEEEEEE
Q 031440 52 GLVSCTFKVPPR--LTD---RNGNLANGAIAN-LVDEVGGAVVYVEGL----PM-KVSVDMSISFVSTAKVNDELEITGR 120 (159)
Q Consensus 52 g~v~~~~~v~~~--~~N---~~G~lHGG~lat-l~D~a~~~a~~~~~~----~~-~vT~~l~i~fl~p~~~g~~l~~~a~ 120 (159)
+.+.....++++ +-| +..-+-.|++-. .+=.+++..+..... .. ..+++ ++.|.+|+.+|+.+.++.+
T Consensus 33 ~~i~a~k~Vt~nepfF~gHFP~~PimPGVLileamaQ~~g~~~~~~~~~~~~~~~~~gid-~~kF~~~V~PGd~l~l~~~ 111 (147)
T COG0764 33 KRIVAIKNVTINEPFFTGHFPGDPIMPGVLILEAMAQAAGFLLGWLLGNKGKLGYFLGID-NAKFKRPVLPGDQLELEVK 111 (147)
T ss_pred cEEEEEEccCCCCCeeCCcCCCCCCcchhHHHHHHHHHHHHHHhccccCCccEEEEEEec-ceeecCccCCCCEEEEEEE
Confidence 467677777553 323 345566666532 222333333333222 11 34444 8999999999999999999
Q ss_pred EEeEc-CcEEEEEEEEEECCCCcEEEEEEEEEEeecC
Q 031440 121 VLGQR-GGYSGTIVLMRNKATGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 121 v~~~g-r~~~~v~~~i~~~~~g~lvA~a~~t~~i~~~ 156 (159)
+++.+ +......++... +|+++++|+..++...+
T Consensus 112 ~~~~~~~~~~~~~~~a~V--dg~~v~~a~~~~~~~~~ 146 (147)
T COG0764 112 LLKSRRLGIGKAKGVATV--DGKVVAEAELLFAGVEK 146 (147)
T ss_pred EEEecccceEEEEEEEEE--CCEEEEEEEEEEEEeec
Confidence 99999 888888999998 59999999988887543
No 66
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=96.99 E-value=0.0057 Score=43.27 Aligned_cols=66 Identities=17% Similarity=0.113 Sum_probs=43.7
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEE
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEGL-PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMR 136 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~~-~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~ 136 (159)
.-.+||-.+++++-....-.+ .. .......++++|++|+..|+.|.++.++.......-...+++.
T Consensus 50 ~~ivhG~~~~a~~~~~~~~~~---~~~~~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~~~~~~~~v~~~ 116 (122)
T PF01575_consen 50 GPIVHGMLTLALASGLLGDWL---GPNPPARLGRFNVRFRAPVFPGDTLTAEVEVTEKREGKERVRVTVT 116 (122)
T ss_dssp SSB-BHHHHHHHHHHHHHHHH---STTECEEEEEEEEEESS--BTTEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred CEEEccHHHHHHHHHHHHHhc---cCccceEEEEEEEEEeccccCCCEEEEEEEEEEEEEcCceEEEEEE
Confidence 458899999888765444332 32 2467888999999999999999999999854443333333333
No 67
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=96.97 E-value=0.028 Score=41.09 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=55.1
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCC-----CEEEEEEEEEeE--cCcEEEEEEEEEECCC
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVN-----DELEITGRVLGQ--RGGYSGTIVLMRNKAT 140 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g-----~~l~~~a~v~~~--gr~~~~v~~~i~~~~~ 140 (159)
.=.+||...++++-.+... ..+....+ .+++++|.+|+..| +.|.++++|... +++.+.+++.+.++ +
T Consensus 54 ~~iahG~~~~a~~~~~~~~---~~~~~~~~-~~~~~rF~~pv~~g~D~~~~~l~~~~~V~~~~~~~~~v~~~~~~~~~-~ 128 (142)
T PRK13693 54 TAIAHGMLTMGLGGGYVTS---WVGDPGAV-TEYNVRFTAVVPVPNDGKGAELVFNGRVKSVDPESKSVTIALTATTG-G 128 (142)
T ss_pred CcEecHHHHHHHHHHHHHH---hcCCCcce-EEEEEEecccEECCCCccceEEEEEEEEEEeccCCcEEEEEEEEEEC-C
Confidence 3468999988887764322 12222123 46899999999853 389999999854 66788888888876 4
Q ss_pred CcEEEEEEEEEE
Q 031440 141 GEVIAEGRHSLF 152 (159)
Q Consensus 141 g~lvA~a~~t~~ 152 (159)
++++..|.....
T Consensus 129 ~~~~~~~~~~~~ 140 (142)
T PRK13693 129 KKIFGRAIASAK 140 (142)
T ss_pred cEEEEEEEEEEE
Confidence 566777765543
No 68
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=96.76 E-value=0.027 Score=45.98 Aligned_cols=108 Identities=12% Similarity=0.047 Sum_probs=78.5
Q ss_pred eEEEEEcCCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEe
Q 031440 44 IRVDRVEPGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLG 123 (159)
Q Consensus 44 l~~~~~~~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~ 123 (159)
++++.++++.-+.+....+ ..++.+.+.||.+++-+ ...|..+.... -+--+|..+|++......+|.-..+-+|
T Consensus 14 l~l~~lD~n~f~~~~l~~g-~~~~~~~~fGG~i~sQa---LaAA~~TV~e~-f~p~SlH~YFI~~gd~~~pI~Y~V~rir 88 (294)
T KOG3016|consen 14 LNLERLDKNLYLTRHLPKG-REIPSNHAYGGQIASQA---LAAASKTVEEM-FIPHSLHCYFILVGDPNIPIIYDVKRIR 88 (294)
T ss_pred heeeecCCCceecccCCcc-ccccCcccccceehHHH---HHHHHhccccc-cccceeeeeeeecCCCCCceEEEeeeec
Confidence 3555566654433333222 24788899999877643 33333333333 3566789999999999999999999999
Q ss_pred EcCcEEEEEEEEEECCCCcEEEEEEEEEEeecCCC
Q 031440 124 QRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQPSK 158 (159)
Q Consensus 124 ~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~~~~ 158 (159)
-||+.+.-.++.++ +|++|-.+...|-+..+++
T Consensus 89 dGr~F~~R~V~AvQ--~~k~If~~qiSF~~~~ks~ 121 (294)
T KOG3016|consen 89 DGRNFATRSVDAVQ--KGKTIFTLQISFQQSEKSS 121 (294)
T ss_pred CCceeEEEEEEEEE--CCeEEEEEEEEEccccCCC
Confidence 99999999999999 4999999998887666654
No 69
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=96.65 E-value=0.012 Score=41.91 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=37.1
Q ss_pred eEEEEEEEEEEecCCCCCCEEEEEEEEEeE----c---CcEEEEEEEEEECCCCcEEEE
Q 031440 95 MKVSVDMSISFVSTAKVNDELEITGRVLGQ----R---GGYSGTIVLMRNKATGEVIAE 146 (159)
Q Consensus 95 ~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~----g---r~~~~v~~~i~~~~~g~lvA~ 146 (159)
..+=.+.++.|.+|++.|+.|.+++++... | ...+.++.+++|+ +|+++++
T Consensus 74 ~~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~~-~Ge~v~t 131 (132)
T PF13452_consen 74 RLVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTDQ-DGELVAT 131 (132)
T ss_dssp GEEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE-C-TTEEEEE
T ss_pred hEEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEECC-CCCEEEe
Confidence 367778899999999999999999999732 2 2234557888887 7999985
No 70
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=96.64 E-value=0.048 Score=40.61 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=44.3
Q ss_pred EEEEEecCCCCCCEEEEEEEEEeEc----CcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 101 MSISFVSTAKVNDELEITGRVLGQR----GGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 101 l~i~fl~p~~~g~~l~~~a~v~~~g----r~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
-+++|.+|+..|+.|.++.+++... +..+.++.+..+. +|+++.....+..+..
T Consensus 99 ~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~~~~~~~-~g~~v~~~~~~~~~~~ 156 (159)
T COG2030 99 DEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLRLETVNQ-EGELVLTLEATVLVLR 156 (159)
T ss_pred cceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEEEEEEcc-CCcEEEEEEEeEeEee
Confidence 3899999999999999999998543 2677788999987 6889888887766653
No 71
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=96.63 E-value=0.039 Score=40.79 Aligned_cols=79 Identities=9% Similarity=-0.088 Sum_probs=52.2
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCeE---EEEEEEEEEecCCCCCCEEEEEEEEEeE----cC-cEEEEEEEEEECCCC
Q 031440 70 NLANGAIANLVDEVGGAVVYVEGLPMK---VSVDMSISFVSTAKVNDELEITGRVLGQ----RG-GYSGTIVLMRNKATG 141 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~~~~~~~~~---vT~~l~i~fl~p~~~g~~l~~~a~v~~~----gr-~~~~v~~~i~~~~~g 141 (159)
.+||-.+++++.....-... ..... .....+++|++|+..|+.|.++.+|... +. ..++.+++++-..+.
T Consensus 58 Ia~G~~t~sl~~~l~~~~~~--~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (149)
T cd03450 58 IAHGFLTLSLLPALTPQLFR--VEGVKMGVNYGLDKVRFPAPVPVGSRVRGRFTLLSVEELKGGGVQVTLEVTVEIEGED 135 (149)
T ss_pred EECHHHHHHHHHHHHHhccc--CCCceEEEEeeccEEEeCcceeCCcEEEEEEEEEEEEEcCCCeEEEEEEEEEEEeCCC
Confidence 57888888777665433211 11111 2223489999999999999999999843 21 367777777765456
Q ss_pred cEEEEEEEE
Q 031440 142 EVIAEGRHS 150 (159)
Q Consensus 142 ~lvA~a~~t 150 (159)
+++..+.-.
T Consensus 136 ~p~~~~~~~ 144 (149)
T cd03450 136 KPACVAEWI 144 (149)
T ss_pred CceEEEEEE
Confidence 777777644
No 72
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=96.63 E-value=0.041 Score=39.22 Aligned_cols=73 Identities=7% Similarity=-0.121 Sum_probs=47.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEE
Q 031440 69 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
=.+||-..++++..+..-.. . .........++++|.+|+..|+.|.++.+. .++ .+.+++++.+ +|+++.++.
T Consensus 45 ~iahG~~t~a~~~~~~~~~~-~-~~~~~~~~~~~~rF~~PV~~gDtl~~~~~~--~~~-~v~~~~~~~~--~g~~v~~g~ 117 (122)
T cd03448 45 PILHGLCTYGFAARAVLEAF-A-DGDPARFKAIKVRFSSPVFPGETLRTEMWK--EGN-RVIFQTKVVE--RDVVVLSNG 117 (122)
T ss_pred ceehhHHHHHHHHHHHHHHh-c-CCCcceeEEEEEEEcCCccCCCEEEEEEEE--eCC-EEEEEEEEcc--CCcEEEECC
Confidence 45888888887765432211 1 122234556799999999999999988873 444 6566666654 577766653
No 73
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=96.10 E-value=0.037 Score=50.22 Aligned_cols=91 Identities=10% Similarity=-0.092 Sum_probs=61.3
Q ss_pred EEcCCCCCCC---------CCCccHHHHHHHHHHHHHHHHHhcCCCeE-E-EEEEEEEEecCCCCCCEEEEEEEEEeEc-
Q 031440 58 FKVPPRLTDR---------NGNLANGAIANLVDEVGGAVVYVEGLPMK-V-SVDMSISFVSTAKVNDELEITGRVLGQR- 125 (159)
Q Consensus 58 ~~v~~~~~N~---------~G~lHGG~latl~D~a~~~a~~~~~~~~~-v-T~~l~i~fl~p~~~g~~l~~~a~v~~~g- 125 (159)
.+..|-|.+. .=..||-..++++..... ....... . ...-+++|++|+..||.|.++++|+...
T Consensus 554 gD~nPiH~D~e~A~~s~fg~~Ia~G~l~~sl~~~l~~----~~~~~~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~e~~~ 629 (663)
T TIGR02278 554 GDHFYAHMDEIAARESFFGKRVAHGYFVLSAAAGLFV----DPAPGPVLANYGLENLRFLEPVGPGDTIQVRLTVKRKTP 629 (663)
T ss_pred CCCCcccCCHHHHhhCCCCCceeCHHHHHHHHHHHhh----ccCccchhhhcccceEEEcCCCCCCCEEEEEEEEEEEEe
Confidence 3555666653 126788888888754321 1111111 1 1223899999999999999999998542
Q ss_pred -C----cEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 126 -G----GYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 126 -r----~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+ ..+.+++++.++ +|+++.++....++
T Consensus 630 ~~~~~~g~v~~~~~v~nq-~G~~Vl~~~~~~lv 661 (663)
T TIGR02278 630 RDEKTYGVVEWAAEVVNQ-NGEPVATYDVLTLV 661 (663)
T ss_pred cCCCCceEEEEEEEEEcC-CCCEEEEEEEHHhc
Confidence 1 268889999987 79999999876554
No 74
>PLN02868 acyl-CoA thioesterase family protein
Probab=96.02 E-value=0.052 Score=46.35 Aligned_cols=79 Identities=18% Similarity=0.058 Sum_probs=63.6
Q ss_pred CccHHHHHHHHHHHHHHHHH-hcCC--Ce--EEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEE
Q 031440 70 NLANGAIANLVDEVGGAVVY-VEGL--PM--KVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVI 144 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~~-~~~~--~~--~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lv 144 (159)
.+|-.+++.+.|......+. .+.. .+ .++.+-+|+|++|...++++..+.+....+......++++|++ +|++|
T Consensus 326 ~~~~a~lay~sD~~~l~~~l~~~~~~~~~~~~aSLdhsi~Fh~~~~~d~W~l~~~~s~~a~~gr~~~~g~l~~~-~G~Lv 404 (413)
T PLN02868 326 ALHRCVAAYASDLIFLGTSLNPHRTKGLKFAALSLDHSMWFHRPFRADDWLLFVIVSPAAHNGRGFATGHMFNR-KGELV 404 (413)
T ss_pred HHHHHHHHHHhhhhhhHhhhccccCCCCceEEEEcceeEEEecCCCCCceEEEEEECCccCCCcceEEEEEECC-CCCEE
Confidence 57888899999976654332 2222 12 5677789999999999999999999999988888899999998 79999
Q ss_pred EEEEE
Q 031440 145 AEGRH 149 (159)
Q Consensus 145 A~a~~ 149 (159)
|+..-
T Consensus 405 As~~Q 409 (413)
T PLN02868 405 VSLTQ 409 (413)
T ss_pred EEEEe
Confidence 99863
No 75
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=95.96 E-value=0.036 Score=45.31 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=63.6
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEE
Q 031440 67 RNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAE 146 (159)
Q Consensus 67 ~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~ 146 (159)
..--++||.+.+-+=.|+ ....... -+-=++..+|++|....++|.-..+.+|-||+....+|+.+. +|+++..
T Consensus 30 g~~~vFGGqvvaQAL~Aa---~~TV~~~-r~vhSlh~yFl~pgd~~~pi~y~Ve~lRdG~sfs~rrV~aiQ--~g~~If~ 103 (289)
T COG1946 30 GLRRVFGGQVVAQALVAA---LRTVPED-RVVHSLHSYFLRPGDPEQPIIYDVERLRDGRSFSTRRVDAIQ--HGKLIFS 103 (289)
T ss_pred CCccccccchHHHHHHHH---HhhcCCC-CCcceehhhhcCCCCcCCceEEEEEeccCCCceEeEEEEEEE--CCEEEEE
Confidence 455678997766433322 2222322 244567789999999999999999999999999999999998 5999999
Q ss_pred EEEEEEeec
Q 031440 147 GRHSLFGRQ 155 (159)
Q Consensus 147 a~~t~~i~~ 155 (159)
+++.|.+..
T Consensus 104 ~~ASF~~~e 112 (289)
T COG1946 104 ATASFQVPE 112 (289)
T ss_pred EEeeccCCC
Confidence 998887654
No 76
>PLN02864 enoyl-CoA hydratase
Probab=95.82 E-value=0.22 Score=41.19 Aligned_cols=77 Identities=9% Similarity=-0.090 Sum_probs=49.5
Q ss_pred CCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEE
Q 031440 69 GNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 69 G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
=++||-+.++++-.+..-.. ....+....+++++|.+|+..|+.|.++.+. . +..+..++++ ++ +|+++.+|.
T Consensus 228 ~IaHGm~t~g~~~~~~~~~~--~~~~~~~~~~~~~rF~~PV~pGdtl~~~~~~--~-~~~v~~~~~~-~~-~g~~vl~G~ 300 (310)
T PLN02864 228 PILHGLCTLGFAVRAVIKCF--CNGDPTAVKTISGRFLLHVYPGETLVTEMWL--E-GLRVIYQTKV-KE-RNKAVLSGY 300 (310)
T ss_pred ceeccHHHHHHHHHHHHhhh--cCCCCceEEEEEEEEcCCccCCCEEEEEEEe--C-CCEEEEEEEE-ec-CCeEEEEEE
Confidence 45888777766544322111 1222234456899999999999999776653 3 3455566666 33 688888887
Q ss_pred EEEE
Q 031440 149 HSLF 152 (159)
Q Consensus 149 ~t~~ 152 (159)
.++-
T Consensus 301 a~~~ 304 (310)
T PLN02864 301 VDLR 304 (310)
T ss_pred EEEe
Confidence 7654
No 77
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=95.75 E-value=0.077 Score=48.24 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=59.9
Q ss_pred EEcCCCCCCC---------CCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEE---EEEEEecCCCCCCEEEEEEEEEeEc
Q 031440 58 FKVPPRLTDR---------NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVD---MSISFVSTAKVNDELEITGRVLGQR 125 (159)
Q Consensus 58 ~~v~~~~~N~---------~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~---l~i~fl~p~~~g~~l~~~a~v~~~g 125 (159)
....|-|.+. .=.+||-..++++-.... ..... ....+ -+++|++|+..||.|.++.+|....
T Consensus 566 gD~nPiH~D~e~A~~~~fg~~ia~G~l~~sl~~~l~~----~~~~~-~~~~~~g~~~~rF~~PV~~GDtl~~~~~V~~~~ 640 (675)
T PRK11563 566 GDTFYAHMDEIAAAANFFGGRVAHGYFVLSAAAGLFV----DPAPG-PVLANYGLENLRFLTPVKPGDTIQVRLTCKRKT 640 (675)
T ss_pred CCCCccccCHHHHhhCCCCCceeCHHHHHHHHHHHhh----ccCcc-chhhhcccceEEEcCCCCCCCEEEEEEEEEEEE
Confidence 3555666653 125777776666544321 11111 11111 2799999999999999999998652
Q ss_pred ------CcEEEEEEEEEECCCCcEEEEEEEEEEe
Q 031440 126 ------GGYSGTIVLMRNKATGEVIAEGRHSLFG 153 (159)
Q Consensus 126 ------r~~~~v~~~i~~~~~g~lvA~a~~t~~i 153 (159)
+..+.+++++.++ +|+++.++....++
T Consensus 641 ~~~~~~~~~v~~~~~~~nq-~G~~V~~~~~~~lv 673 (675)
T PRK11563 641 PRRQAPYGVVRWDVEVTNQ-DGELVATYDILTLV 673 (675)
T ss_pred ecCCCCceEEEEEEEEEEC-CCCEEEEEEEHHhc
Confidence 1368889999987 79999999876554
No 78
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=95.74 E-value=0.098 Score=38.02 Aligned_cols=78 Identities=21% Similarity=0.117 Sum_probs=53.6
Q ss_pred CccHHHHHHHHHHHHHHHH-HhcC---CCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEE-ECCCCcEE
Q 031440 70 NLANGAIANLVDEVGGAVV-YVEG---LPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMR-NKATGEVI 144 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~a~-~~~~---~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~-~~~~g~lv 144 (159)
.+|-=+++-+-|.....++ ..++ ....+|++=+|.|++|.+.+++|....+--........++++++ +. +|++|
T Consensus 45 ~~h~~~laY~SD~~~L~tal~~H~~~~~~~~vSlDHs~wFHrpfr~ddWlLY~~~sp~A~~~Rgl~~G~~f~~q-~G~Lv 123 (131)
T PF02551_consen 45 RIHSCALAYASDFTLLDTALQPHGFGFPKFQVSLDHSMWFHRPFRADDWLLYAIESPSASGGRGLVRGRFFDTQ-DGELV 123 (131)
T ss_dssp CCCCCHHHHHCCCCCGGGGGCCGCCCCCCEEEEEEEEEEE-S--BTTS-EEEEEEEEEEETTEEEEEECCEEEC-TTEEE
T ss_pred hHhHHHHHHHhHHhHHHhhhccccccccccEEecceeEEEcCCCCCCCCEEEEEEcCccccCcccccCceEecC-CCCEE
Confidence 3455556655555443322 2233 12346888899999999999999988888888888888999999 66 89999
Q ss_pred EEEE
Q 031440 145 AEGR 148 (159)
Q Consensus 145 A~a~ 148 (159)
|+..
T Consensus 124 as~~ 127 (131)
T PF02551_consen 124 ASVV 127 (131)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9875
No 79
>PLN02864 enoyl-CoA hydratase
Probab=95.70 E-value=0.11 Score=43.06 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=47.8
Q ss_pred EEEEEEEEEEecCCCCCCEEEEEEEEEeE---cCc-EEEEEEEEEECCCCcEEEEEEEEEEeecC
Q 031440 96 KVSVDMSISFVSTAKVNDELEITGRVLGQ---RGG-YSGTIVLMRNKATGEVIAEGRHSLFGRQP 156 (159)
Q Consensus 96 ~vT~~l~i~fl~p~~~g~~l~~~a~v~~~---gr~-~~~v~~~i~~~~~g~lvA~a~~t~~i~~~ 156 (159)
.+=.+-++.|.+|++.++.+.+++++... |+. ++.++.++.++.+|+++++...+++++..
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~Rg~ 158 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLRGA 158 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEeCC
Confidence 45555689999999999999999999744 332 35677777785579999999999888753
No 80
>COG1946 TesB Acyl-CoA thioesterase [Lipid metabolism]
Probab=95.61 E-value=0.1 Score=42.69 Aligned_cols=85 Identities=21% Similarity=0.141 Sum_probs=63.4
Q ss_pred CccHHHHHHHHHHHHHH-HHHhcCC------CeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCc
Q 031440 70 NLANGAIANLVDEVGGA-VVYVEGL------PMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGE 142 (159)
Q Consensus 70 ~lHGG~latl~D~a~~~-a~~~~~~------~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~ 142 (159)
.+|--.++-+-|..... +...++. -..+|++=++.|++|.+.+++|....+.-........+++++++. +|+
T Consensus 193 ~~~~~lLay~SD~~ll~tal~~Hg~~~~~~~~~~aSLDHs~wFhrp~~~ddWlLy~~~sp~A~~~rgl~~G~lf~r-~G~ 271 (289)
T COG1946 193 RLHQALLAYLSDFTLLDTALQPHGLGFLTPGIQVASLDHSMWFHRPFRLDDWLLYAQESPSASGGRGLVRGQLFDR-DGQ 271 (289)
T ss_pred HHHHHHHHHhccchhhhhhhccCCCccccCcceEeeccceEEEeccccCCCEEEEEeeCCcccCCcceeeeEEEcC-CCC
Confidence 45666666666665443 3333442 246888889999999999999998888776666677799999997 899
Q ss_pred EEEEEEEEEEeec
Q 031440 143 VIAEGRHSLFGRQ 155 (159)
Q Consensus 143 lvA~a~~t~~i~~ 155 (159)
|+|+..-.-.+..
T Consensus 272 LiA~~~QEG~~r~ 284 (289)
T COG1946 272 LIASVVQEGLIRY 284 (289)
T ss_pred EEEEEeeeEEEec
Confidence 9999876665553
No 81
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=95.33 E-value=0.67 Score=33.01 Aligned_cols=100 Identities=14% Similarity=0.108 Sum_probs=66.6
Q ss_pred CCEEEEEEEcCCCCC---CC-CCCccHHHHHHHHHHHHHHHHHhcCC----CeEEEEEEEEEEecCCCCCCEEEEEEEEE
Q 031440 51 PGLVSCTFKVPPRLT---DR-NGNLANGAIANLVDEVGGAVVYVEGL----PMKVSVDMSISFVSTAKVNDELEITGRVL 122 (159)
Q Consensus 51 ~g~v~~~~~v~~~~~---N~-~G~lHGG~latl~D~a~~~a~~~~~~----~~~vT~~l~i~fl~p~~~g~~l~~~a~v~ 122 (159)
++.......+++.|- .+ .+.+.|=+++-.+=.++........+ ...+..+++++|.+++....++.++.++.
T Consensus 19 ~~~~~~~~~~p~~h~~~~dh~~dh~~gmll~Ea~RQa~~~~~h~~~~vp~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~ 98 (132)
T PF03756_consen 19 DGRFRARLQWPRSHPFFFDHPGDHVPGMLLLEAARQAGIALAHRFYGVPLDHQFVLTSLDFTFSRFAELDVPADLTVRIT 98 (132)
T ss_pred CCEEEEEEEcCCCCccccCCCCCccChHHHHHHHHHHHHHhhccccCCCCCceEEEEEEEEEEccccccCCCEEEEEEEE
Confidence 555566666655543 22 34455555555555555544433321 22577789999999998888888888887
Q ss_pred eEcC-----cEEEEEEEEEECCCCcEEEEEEEEEE
Q 031440 123 GQRG-----GYSGTIVLMRNKATGEVIAEGRHSLF 152 (159)
Q Consensus 123 ~~gr-----~~~~v~~~i~~~~~g~lvA~a~~t~~ 152 (159)
.... +...++++++. +|+++|+++.++-
T Consensus 99 ~~~~~~~~~~~~~~~v~~~q--~g~~~a~~~~~~t 131 (132)
T PF03756_consen 99 CRDRRGGRPRGLRFRVTVSQ--GGRVVATASMTFT 131 (132)
T ss_pred eccccCCccceEEEEEEEEE--CCEEEEEEEEEEE
Confidence 4443 37778899998 5999999988763
No 82
>TIGR01749 fabA beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids.
Probab=94.64 E-value=1.4 Score=33.23 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=62.9
Q ss_pred EEEEEEEcCCCC--C-CC---CCCccHHHHHHHHHHHHHHHHHhcC-C-C-eEEEEEEEEEEecCCCCCCEE-EEEEEEE
Q 031440 53 LVSCTFKVPPRL--T-DR---NGNLANGAIANLVDEVGGAVVYVEG-L-P-MKVSVDMSISFVSTAKVNDEL-EITGRVL 122 (159)
Q Consensus 53 ~v~~~~~v~~~~--~-N~---~G~lHGG~latl~D~a~~~a~~~~~-~-~-~~vT~~l~i~fl~p~~~g~~l-~~~a~v~ 122 (159)
.++.+..++++. . ++ ...+=|=++.-.|=.++++.+.... . . ....++ +..|.+|+.+|+.+ .++.++.
T Consensus 51 ~i~a~k~Vs~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~gi~-~~kfr~~v~Pgd~~~~l~v~i~ 129 (169)
T TIGR01749 51 YVEAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVG-EVKFTGQVLPTAKKVTYRIHFK 129 (169)
T ss_pred EEEEEEEcCCCCcceeCCCCCCCcCchHHHHHHHHHHHHHHHhccccCCceEEeecc-EEEEccCEecCCeEEEEEEEEE
Confidence 788888888863 2 32 2346665566565555554432222 1 1 122223 89999999999886 7888887
Q ss_pred eE---cCcEEEEEEEEEECCCCcEEEEEE
Q 031440 123 GQ---RGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 123 ~~---gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
+. .+.....+++++. +|+++|+++
T Consensus 130 ~~~~~~~~~~~~~~~i~v--~g~~va~a~ 156 (169)
T TIGR01749 130 RVINRRLVMGIADGEVLV--DGRLIYTAS 156 (169)
T ss_pred EEeecCCcEEEEEEEEEE--CCEEEEEEE
Confidence 75 4568999999998 589999975
No 83
>PRK05174 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated
Probab=94.60 E-value=1.5 Score=33.24 Aligned_cols=102 Identities=9% Similarity=-0.030 Sum_probs=68.3
Q ss_pred EEEEEcCC-------EEEEEEEcCCCC---CCCC---CCccHHHHHHHHHHHHHHHHHhcCC--CeEEEEEEEEEEecCC
Q 031440 45 RVDRVEPG-------LVSCTFKVPPRL---TDRN---GNLANGAIANLVDEVGGAVVYVEGL--PMKVSVDMSISFVSTA 109 (159)
Q Consensus 45 ~~~~~~~g-------~v~~~~~v~~~~---~N~~---G~lHGG~latl~D~a~~~a~~~~~~--~~~vT~~l~i~fl~p~ 109 (159)
++.+.+++ .++.+..++++. .++. ..+-|=.+.-.+=.++++.+..... .......-+..|.+++
T Consensus 39 rV~~~~~~gg~~~~g~i~a~k~v~~~e~ff~gHFp~~PvmPG~L~iEamAQ~~~~~~~~~~~~~~g~l~g~~~~kfr~~v 118 (172)
T PRK05174 39 RITEISETGGEFGKGYIVAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQV 118 (172)
T ss_pred EEEEEcCCCCcccceEEEEEEECCCCCccccCCCCCCCcCchHHHHHHHHHHHHHHHhcccccCceEEeeccEEEECccC
Confidence 45555554 688888888863 2332 3355655555555555544322221 1122222379999999
Q ss_pred CCCCE-EEEEEEEEeE---cCcEEEEEEEEEECCCCcEEEEEE
Q 031440 110 KVNDE-LEITGRVLGQ---RGGYSGTIVLMRNKATGEVIAEGR 148 (159)
Q Consensus 110 ~~g~~-l~~~a~v~~~---gr~~~~v~~~i~~~~~g~lvA~a~ 148 (159)
.+|+. +.++.++.+. .+.....+++++. +|+++|+++
T Consensus 119 ~Pgd~~l~l~v~i~~~~~~~~~~~~~~~~i~v--~g~~va~a~ 159 (172)
T PRK05174 119 LPTAKKVTYEIDIKRVINRKLVMGIADGRVLV--DGEEIYTAK 159 (172)
T ss_pred cCCCEEEEEEEEEEEEecCCCCEEEEEEEEEE--CCEEEEEEE
Confidence 99988 8888888875 4668999999998 599999994
No 84
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=91.82 E-value=5.4 Score=31.59 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=63.5
Q ss_pred CEEEEEEEcCCCCCC--CCCCccHHHHHHHHHHHHHHH---HHh-c-CCCe--EEEEEEEEEEec-CCCCCCEEEEEEEE
Q 031440 52 GLVSCTFKVPPRLTD--RNGNLANGAIANLVDEVGGAV---VYV-E-GLPM--KVSVDMSISFVS-TAKVNDELEITGRV 121 (159)
Q Consensus 52 g~v~~~~~v~~~~~N--~~G~lHGG~latl~D~a~~~a---~~~-~-~~~~--~vT~~l~i~fl~-p~~~g~~l~~~a~v 121 (159)
+.+..++.+.+.... ..-.+|.+ ++|.++-.+ +.. . .... .+.++ ++.+.+ |.+.++.+.++++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~P~----llD~~lq~~~~~~~~~~~~~~~~lP~~i~-~~~~~~~~~~~~~~~~~~~~~ 256 (295)
T PF14765_consen 182 GEALAEVRLPDDPASDPDPFVLHPA----LLDAALQAAGLALWEDDDRGRVFLPVSIE-RIRIFRAPPPPGDRLYVYARL 256 (295)
T ss_dssp SEEEEEEECGTTTGGGGGGSSS-HH----HHHHHHHGHGCCHTSTTTTTSEEEEEEEE-EEEESSS--SSTSEEEEEEEE
T ss_pred ccceEEEEEEeeccCCCCceeECHH----HHHHHHHHHHHHhccccCCCCEEcccEeC-EEEEEeccCCCCCEEEEEEEE
Confidence 777777877765442 23455764 666665522 211 1 1122 34444 788884 67788999999999
Q ss_pred EeEcCcEEEEEEEEEECCCCcEEEEEEEEEE
Q 031440 122 LGQRGGYSGTIVLMRNKATGEVIAEGRHSLF 152 (159)
Q Consensus 122 ~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~ 152 (159)
...+......++.++|+ +|+++++-..-.+
T Consensus 257 ~~~~~~~~~~dv~v~d~-~G~~~~~~~gl~~ 286 (295)
T PF14765_consen 257 VKSDDDTITGDVTVFDE-DGRVVAELEGLTF 286 (295)
T ss_dssp ESTTTTEEEEEEEEEET-TSBEEEEEEEEEE
T ss_pred ecccceEEEEEEEEECC-CCCEEEEEccEEE
Confidence 99999999999999997 7999999875433
No 85
>KOG3016 consensus Acyl-CoA thioesterase [Lipid transport and metabolism]
Probab=91.22 E-value=0.98 Score=37.05 Aligned_cols=84 Identities=19% Similarity=0.075 Sum_probs=64.1
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHHH-HhcCC--C--eEEEEEEEEEEecC-CCCCCEEEEEEEEEeEcCcEEEEEEEEE
Q 031440 63 RLTDRNGNLANGAIANLVDEVGGAVV-YVEGL--P--MKVSVDMSISFVST-AKVNDELEITGRVLGQRGGYSGTIVLMR 136 (159)
Q Consensus 63 ~~~N~~G~lHGG~latl~D~a~~~a~-~~~~~--~--~~vT~~l~i~fl~p-~~~g~~l~~~a~v~~~gr~~~~v~~~i~ 136 (159)
..++---.+|--+++.+-|..+.-++ ..+.. . ..+|.+=+|.|+++ ...++++.-++.....+....++++++|
T Consensus 202 ~~~~~D~r~h~~~vaylSD~~ll~Ta~~~h~~~g~~s~~~SLdHsiwfH~~e~~iddwilye~~s~~a~~sr~~i~Grlw 281 (294)
T KOG3016|consen 202 ENLRCDERLHRWVVAYLSDLILLTTALNPHNREGMSSMALSLDHSIWFHRPEVRADDWLLYECVSPIATGSRGFIEGKLW 281 (294)
T ss_pred cccCchhhhceehHhhhhhHHHHHhcccchhhccceeeecccceeEEEecccccccceEEEEEEeccccCcceeEeeeEE
Confidence 33333556777788888898877543 33322 2 24555558999998 7899999999999999999999999999
Q ss_pred ECCCCcEEEEE
Q 031440 137 NKATGEVIAEG 147 (159)
Q Consensus 137 ~~~~g~lvA~a 147 (159)
+. +|++++.-
T Consensus 282 ~r-dG~l~~s~ 291 (294)
T KOG3016|consen 282 NR-DGRLICST 291 (294)
T ss_pred cc-CCcEEEEe
Confidence 97 89998764
No 86
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=90.97 E-value=3.6 Score=32.88 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=65.2
Q ss_pred CCEEEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEc-CcEE
Q 031440 51 PGLVSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQR-GGYS 129 (159)
Q Consensus 51 ~g~v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~g-r~~~ 129 (159)
+......+.|....+...|.+.--....|+-++....... .....++.|+|.+.+..|+.|.+...+.... ....
T Consensus 163 ~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~~----~~~~~~i~I~y~~E~~~gd~i~~~~~~~~~~~~~~~ 238 (261)
T PF01643_consen 163 EPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFLE----KYQIKSIDINYKKEIRYGDTITSYTEVEKDEEEDGL 238 (261)
T ss_dssp TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHHC----CEEEEEEEEEE-S--BTT-EEEEEEEEEEECCTTEE
T ss_pred hhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhhc----cCCcEEEEEEEccccCCCCEEEEEEEEcccccCCce
Confidence 3456678888888888889998888887776655443321 2356688999999999999999988876444 4466
Q ss_pred EEEEEEEECCCCcEEEEEEEEE
Q 031440 130 GTIVLMRNKATGEVIAEGRHSL 151 (159)
Q Consensus 130 ~v~~~i~~~~~g~lvA~a~~t~ 151 (159)
...-.+.++ +|+.+|.+...|
T Consensus 239 ~~~h~i~~~-~g~~~~~~~~~W 259 (261)
T PF01643_consen 239 STLHEIRNE-DGEEVARARTEW 259 (261)
T ss_dssp EEEEEEECT--TCEEEEEEEEE
T ss_pred EEEEEEEcC-CCceEEEEEEEE
Confidence 788889987 599999998654
No 87
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=83.53 E-value=12 Score=29.93 Aligned_cols=58 Identities=7% Similarity=-0.004 Sum_probs=50.0
Q ss_pred EEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 96 KVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 96 ~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
=+.....+++.+|...++.++++.++....++.++.++++.+. |..+....++|+...
T Consensus 56 WiV~~~~i~~ir~pef~e~iti~t~~~s~~~ffcyrrf~~~~~--gg~Lie~~a~wilmn 113 (250)
T COG3884 56 WIVRRTEIDVIRPPEFGEMITIETWCSSISNFFCYRRFRLDGR--GGGLIEIEAFWILMN 113 (250)
T ss_pred EEEEEEEEEEeeccccCCcceEEEeeccccceEEEEEEEEecC--CCcEEEEEEEEEEEc
Confidence 3667779999999999999999999999999999999999994 677777777776653
No 88
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=71.17 E-value=15 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEE
Q 031440 111 VNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSL 151 (159)
Q Consensus 111 ~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~ 151 (159)
.|..+.+.++|-|.+.-+..+.+.+.|-++|+++...+..+
T Consensus 79 ~GAd~~lvG~VqKvS~Lil~~~~~v~Dv~tg~~v~~~~~di 119 (140)
T PF11684_consen 79 LGADYVLVGEVQKVSNLILNMNVYVRDVETGKVVRGRSVDI 119 (140)
T ss_pred cCCCEEEEEEEechhhhheeeeEEEEECCCCCEEeeeeeeE
Confidence 45678899999999999999999999988999999887554
No 89
>PLN02370 acyl-ACP thioesterase
Probab=69.58 E-value=75 Score=27.58 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=60.7
Q ss_pred EEEEEEcCCCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEE-----eE-cCc
Q 031440 54 VSCTFKVPPRLTDRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVL-----GQ-RGG 127 (159)
Q Consensus 54 v~~~~~v~~~~~N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~-----~~-gr~ 127 (159)
....+++....+..+|.+.-.....|+=++.-.-... .....+++|+|.+.+..|+.|.+...+. .. ...
T Consensus 302 ~~~~~~VRysDLD~NgHVNNvkYi~Wild~lP~e~l~----~~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~ 377 (419)
T PLN02370 302 IRKGLTPRWSDLDVNQHVNNVKYIGWILESAPPPIME----SHELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAG 377 (419)
T ss_pred eeeeeeecHHHCcccCccccHHHHHHHHhhCchhhhh----cceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCC
Confidence 3445777777788888888888887776544432221 1345678999999999999988776542 11 111
Q ss_pred EEEEEEEEEECCCCcEEEEEEEEEE
Q 031440 128 YSGTIVLMRNKATGEVIAEGRHSLF 152 (159)
Q Consensus 128 ~~~v~~~i~~~~~g~lvA~a~~t~~ 152 (159)
...+...+..+ +|+.++.++..+.
T Consensus 378 ~~~~~h~~~~~-dG~e~a~a~t~Wr 401 (419)
T PLN02370 378 DVECQHLLRLE-DGAEIVRGRTEWR 401 (419)
T ss_pred cceEEEEEEcC-CCeEEEEEEEEEE
Confidence 11233333444 7999999987654
No 90
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=66.25 E-value=22 Score=37.62 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=45.7
Q ss_pred EEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEEEEEeec
Q 031440 102 SISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRHSLFGRQ 155 (159)
Q Consensus 102 ~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~t~~i~~ 155 (159)
++...+|.+.|+...+..+|.+...+.+.++++++|+ +|++++.-....++..
T Consensus 2522 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~-~g~~~~~~~~~~~~~~ 2574 (2582)
T TIGR02813 2522 EFVSYRPVSLGEKFYLKLDVVKSSGRSLVANIELYHQ-DGRLSSEMKSAKVTIS 2574 (2582)
T ss_pred eEEEecCCCCCCceEEEEEEEeccCCeEEEEEEEECC-CCcEEEEEeCCeEEEC
Confidence 5677788888999999999999999999999999998 7999998876665543
No 91
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=54.91 E-value=71 Score=25.66 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEE
Q 031440 66 DRNGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYS 129 (159)
Q Consensus 66 N~~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~ 129 (159)
..+|.+..-..-+++-+..+.-+.....+ ..+++.|.+|+.+|+.|++..++...+.+-.
T Consensus 165 D~f~HvNNskY~~wi~e~l~~~~~~~~~p----~r~~l~y~keva~G~~iti~~e~~~~~s~~~ 224 (250)
T COG3884 165 DMFGHVNNSKYWSWIEEVLGSEFLKLYGP----LRLTLEYVKEVAPGEKITIVYEVHPLESKHQ 224 (250)
T ss_pred ccccccccceehHHHHHHHhhhhHhhccc----ceeEEEEEcccCCCCeEEEEEEEcccCceee
Confidence 33444444445566666666444332222 3568899999999999999999987776653
No 92
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=40.65 E-value=1.1e+02 Score=20.50 Aligned_cols=45 Identities=31% Similarity=0.472 Sum_probs=32.0
Q ss_pred CCCEEEEEEEEEeEcCcEEEEEEEEEECCCCc----EEEE--EEEEEEeecC
Q 031440 111 VNDELEITGRVLGQRGGYSGTIVLMRNKATGE----VIAE--GRHSLFGRQP 156 (159)
Q Consensus 111 ~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~----lvA~--a~~t~~i~~~ 156 (159)
++....+.++|.+.|.-..-..+++.|. +|+ ++++ |.+.||..|.
T Consensus 4 ~~ke~VItG~V~~~G~Pv~gAyVRLLD~-sgEFtaEvvts~~G~FRFfaapG 54 (85)
T PF07210_consen 4 VEKETVITGRVTRDGEPVGGAYVRLLDS-SGEFTAEVVTSATGDFRFFAAPG 54 (85)
T ss_pred ccceEEEEEEEecCCcCCCCeEEEEEcC-CCCeEEEEEecCCccEEEEeCCC
Confidence 4556789999998888887788888886 565 3333 4566776665
No 93
>COG3777 Uncharacterized conserved protein [Function unknown]
Probab=35.90 E-value=1.4e+02 Score=24.26 Aligned_cols=87 Identities=17% Similarity=0.098 Sum_probs=58.2
Q ss_pred CEEEEEEEcCCCCCCCCC-CccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEEEEEEeEcCcEEE
Q 031440 52 GLVSCTFKVPPRLTDRNG-NLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEITGRVLGQRGGYSG 130 (159)
Q Consensus 52 g~v~~~~~v~~~~~N~~G-~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~a~v~~~gr~~~~ 130 (159)
.++....+......|+.| ++||-.+++++=.++--. ..++ ...+..+=|+|+..++.+.+.++....|+-.
T Consensus 184 HrIHyD~~Yat~vEgYpgLVvhGPl~atlll~~~~~~----~pq~--~~Rf~fR~L~p~f~~~~lti~~~l~~~g~~~-- 255 (273)
T COG3777 184 HRIHYDAPYATYVEGYPGLVVHGPLIATLLLRAFQPF----LPQP--IRRFRFRNLSPAFPNETLTICGSLSGSGGAE-- 255 (273)
T ss_pred eeeeccCcceeeccCCCCceecchHHHHHHHHHhhhh----cccc--chheeccccccccCCCCeeEeeEecCCCceE--
Confidence 345555566666667654 689999999887654432 2222 4456778899999999999999988877633
Q ss_pred EEEEEEECCCCcEEEEEEE
Q 031440 131 TIVLMRNKATGEVIAEGRH 149 (159)
Q Consensus 131 v~~~i~~~~~g~lvA~a~~ 149 (159)
....+. ++.+..+|+.
T Consensus 256 --~w~~~~-~~pv~mrarV 271 (273)
T COG3777 256 --LWTIRG-DGPVAMRARV 271 (273)
T ss_pred --EEEecC-Ccchhheeee
Confidence 222232 4667777754
No 94
>KOG1206 consensus Peroxisomal multifunctional beta-oxidation protein and related enzymes [Lipid transport and metabolism]
Probab=35.28 E-value=35 Score=27.47 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEecCCCCCCEEEEE
Q 031440 68 NGNLANGAIANLVDEVGGAVVYVEGLPMKVSVDMSISFVSTAKVNDELEIT 118 (159)
Q Consensus 68 ~G~lHGG~latl~D~a~~~a~~~~~~~~~vT~~l~i~fl~p~~~g~~l~~~ 118 (159)
.-.+||=+..++.--+.+... .+.+-.+.+++|-+|+-+|+.|...
T Consensus 191 tpilHGlc~lg~~~riv~a~~-----~~a~y~~~kvrF~spV~pGdtll~~ 236 (272)
T KOG1206|consen 191 TPILHGLCTLGFSARIVGAQF-----PPAVYKAQKVRFSSPVGPGDTLLVL 236 (272)
T ss_pred CchhhhHHHhhhhHHHHHHhc-----CchhhheeeeeecCCCCCchhHHHH
Confidence 456999887776554444322 1457778899999999999876543
No 95
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=32.62 E-value=90 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEEEEEEecCCCCCCEEEEEE
Q 031440 96 KVSVDMSISFVSTAKVNDELEITG 119 (159)
Q Consensus 96 ~vT~~l~i~fl~p~~~g~~l~~~a 119 (159)
.++...++.++.++++|++|.+.+
T Consensus 23 G~~~~v~l~lv~~~~vGD~VLVH~ 46 (76)
T TIGR00074 23 GIKRDVSLDLVGEVKVGDYVLVHV 46 (76)
T ss_pred CeEEEEEEEeeCCCCCCCEEEEec
Confidence 477778899998899999998765
No 96
>PF04052 TolB_N: TolB amino-terminal domain; InterPro: IPR007195 TolB is a periplasmic protein from Escherichia coli that is part of the Tol-dependent translocation system involving group A and E colicins that is used to penetrate and kill cells [, ]. TolB has two domains, an alpha-helical N-terminal domain that shares structural similarity with the C-terminal domain of transfer RNA ligases, and a beta-propeller C-terminal domain (IPR011042 from INTERPRO) that shares structural similarity with numerous members of the prolyl oligopeptidase family and, to a lesser extent, to class B metallo-beta-lactamases []. The function of the N-terminal domain is uncertain.; GO: 0015031 protein transport, 0042597 periplasmic space; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A.
Probab=30.99 E-value=1.3e+02 Score=20.10 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCEEEEEEEEEeEcCcEEEEEEEEEECCCCc
Q 031440 102 SISFVSTAKVNDELEITGRVLGQRGGYSGTIVLMRNKATGE 142 (159)
Q Consensus 102 ~i~fl~p~~~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~ 142 (159)
.++|-.=-..|....+.+++.+.|.. ..++++++|-.+++
T Consensus 64 ~~~~~~w~~~gad~lv~G~v~~~g~~-~~v~~~L~Dv~~~~ 103 (105)
T PF04052_consen 64 QVNFSDWRSLGADYLVTGSVTQSGNG-LRVEFRLYDVASGK 103 (105)
T ss_dssp G--HHHHHTTT-SEEEEEEEEE-TTS-EEEEEEEEE-----
T ss_pred CcCHHHHHHcCCCEEEEEEEEECCCE-EEEEEEEEeccccc
Confidence 45555444567778999999999988 89999999865444
No 97
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=25.05 E-value=1.8e+02 Score=21.38 Aligned_cols=58 Identities=14% Similarity=0.169 Sum_probs=39.3
Q ss_pred EEEEEEEecCCCCCCEE----EEEEEEEeEcCcEE---EEEEEEEECCCCcEEEEEEEEEEeecCCC
Q 031440 99 VDMSISFVSTAKVNDEL----EITGRVLGQRGGYS---GTIVLMRNKATGEVIAEGRHSLFGRQPSK 158 (159)
Q Consensus 99 ~~l~i~fl~p~~~g~~l----~~~a~v~~~gr~~~---~v~~~i~~~~~g~lvA~a~~t~~i~~~~~ 158 (159)
.+++|+|=||...|..| .-.++|=|.|-+.+ ...-.+.- .|+.+..|+=++|..|..+
T Consensus 13 ~~i~V~YsrP~~kGR~IFG~LvPygkvWRtGAN~aT~i~f~~dv~i--gGk~l~AG~Ysl~tiP~~~ 77 (145)
T PF11138_consen 13 TDITVDYSRPSVKGRKIFGGLVPYGKVWRTGANEATTITFSKDVTI--GGKKLKAGTYSLFTIPGED 77 (145)
T ss_pred eEEEEEECCCCcCCcccccccccCCCeecCCCCcceEEEECCCeEE--CCEEcCCeeEEEEEecCCC
Confidence 46799999999988654 33455556666543 22333333 4889999998888888654
No 98
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=25.04 E-value=1.6e+02 Score=18.47 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=18.8
Q ss_pred cEEEEEEEEEECCCCcEEEEEEEE
Q 031440 127 GYSGTIVLMRNKATGEVIAEGRHS 150 (159)
Q Consensus 127 ~~~~v~~~i~~~~~g~lvA~a~~t 150 (159)
..--.++++.++ +|++++...|+
T Consensus 42 ~~G~WrV~V~~~-~G~~l~~~~F~ 64 (66)
T PF11141_consen 42 QPGDWRVEVVDE-DGQVLGSLRFS 64 (66)
T ss_pred CCcCEEEEEEcC-CCCEEEEEEEE
Confidence 555689999998 79999988765
No 99
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=22.46 E-value=2.4e+02 Score=18.90 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=23.6
Q ss_pred EEEEEEEEEeEcCcEEEEEEEEEE-CCCCcEEEEEE
Q 031440 114 ELEITGRVLGQRGGYSGTIVLMRN-KATGEVIAEGR 148 (159)
Q Consensus 114 ~l~~~a~v~~~gr~~~~v~~~i~~-~~~g~lvA~a~ 148 (159)
.+.+-..=++.|.-+.-+++++++ . +|+++++++
T Consensus 14 ~~~v~v~~L~tg~Pv~ga~V~l~~~~-~~~~l~~g~ 48 (97)
T PF11974_consen 14 GLLVWVTSLSTGKPVAGAEVELYDSR-NGQVLASGK 48 (97)
T ss_pred CEEEEEeeCCCCCccCCCEEEEEECC-CCcEeeeee
Confidence 345666666777777777788887 5 577777775
No 100
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=21.74 E-value=2.5e+02 Score=18.59 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=24.5
Q ss_pred EEEEecCCC---CCCEEEEEEEEEeEcCcEEEEEEEEEECCCCcEEEEEEE
Q 031440 102 SISFVSTAK---VNDELEITGRVLGQRGGYSGTIVLMRNKATGEVIAEGRH 149 (159)
Q Consensus 102 ~i~fl~p~~---~g~~l~~~a~v~~~gr~~~~v~~~i~~~~~g~lvA~a~~ 149 (159)
+|.-..|.+ .++++++.++-. ---..+..+|.|. +|++++++..
T Consensus 2 ~I~V~~P~pg~~V~sp~~V~G~A~---~FEgtv~~rv~D~-~g~vl~e~~~ 48 (88)
T PF10648_consen 2 NIWVTAPAPGDTVSSPVKVSGKAR---VFEGTVNIRVRDG-HGEVLAEGFV 48 (88)
T ss_pred ceEEcCCCCcCCcCCCEEEEEEEE---EeeeEEEEEEEcC-CCcEEEEeeE
Confidence 455566664 223445555422 1133456777776 6888877643
No 101
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=21.67 E-value=1.8e+02 Score=19.63 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=21.0
Q ss_pred ecCCCCCCEEEEEEEEEeEc--CcEEEEEEEEEECCCCc
Q 031440 106 VSTAKVNDELEITGRVLGQR--GGYSGTIVLMRNKATGE 142 (159)
Q Consensus 106 l~p~~~g~~l~~~a~v~~~g--r~~~~v~~~i~~~~~g~ 142 (159)
+.+...|+.+.+.+|+.+.. ++.+|++ ++|. +|.
T Consensus 6 l~~~~~g~~V~v~Gwv~~~R~~g~~~Fi~--LrD~-~g~ 41 (108)
T cd04316 6 ITPELDGEEVTVAGWVHEIRDLGGIKFVI--LRDR-EGI 41 (108)
T ss_pred CchhhCCCEEEEEEEEEeeeccCCeEEEE--EecC-Cee
Confidence 44455788999999997443 3455544 4554 443
Done!