BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031443
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJJ|A Chain A, Solution Structure Of Hypothetical Protein F20o9.120 From
           Arabidopsis Thaliana
          Length = 145

 Score =  164 bits (416), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 94/120 (78%), Gaps = 6/120 (5%)

Query: 30  KRKPVFTKVDQLKPGTNGHNLTVNVLKSEPVLP---KNRAASPQLRQT---RIAECLVGD 83
           KRKPVF KV+QLKPGT GH LTV V+++  V+P   K R AS   R +   RI ECL+GD
Sbjct: 11  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 70

Query: 84  DTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKED 143
           +TG ILFTARNDQVDLMKPG TVILRN++IDMFKG+MR+ VDKWGRIEAT  A F VKED
Sbjct: 71  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 130


>pdb|1O7I|A Chain A, Crystal Structure Of A Single Stranded Dna Binding Protein
 pdb|1O7I|B Chain B, Crystal Structure Of A Single Stranded Dna Binding Protein
          Length = 119

 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 37  KVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTR-----IAECLVGDDTGTILFT 91
           KV  LKP     N+TV VL+         A+  +  QT+     I+E +VGD+TG +  T
Sbjct: 4   KVGNLKPNMESVNVTVRVLE---------ASEARQIQTKNGVRTISEAIVGDETGRVKLT 54

Query: 92  ARNDQVDLMKPGTTVILRNAKIDMFKGSMRI 122
                   +K G  V + NA    FKG +++
Sbjct: 55  LWGKHAGSIKEGQVVKIENAWTTAFKGQVQL 85


>pdb|2KEN|A Chain A, Solution Nmr Structure Of The Ob Domain (Residues 67-166)
           Of Mm0293 From Methanosarcina Mazei. Northeast
           Structural Genomics Consortium Target Mar214a.
 pdb|2KBN|A Chain A, Solution Nmr Structure Of The Ob Domain (Residues 67-166)
           Of Mm0293 From Methanosarcina Mazei. Northeast
           Structural Genomics Consortium Target Mar214a
          Length = 109

 Score = 34.3 bits (77), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 80  LVGDDTGTILFT-ARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIE-ATEPAK 137
           L+GD+TG I FT  +N ++ L++ G + +LR+  +  +    ++ V+K   IE  +EP +
Sbjct: 40  LLGDETGIIKFTIWKNAELPLLEQGESYLLRSVVVGEYNDRFQVQVNKNSSIEKLSEPIE 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,584,153
Number of Sequences: 62578
Number of extensions: 130810
Number of successful extensions: 361
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 6
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)