BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031443
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49453|Y4844_ARATH Uncharacterized protein At4g28440 OS=Arabidopsis thaliana
GN=At4g28440 PE=1 SV=1
Length = 153
Score = 192 bits (487), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 94/133 (70%), Positives = 107/133 (80%), Gaps = 6/133 (4%)
Query: 30 KRKPVFTKVDQLKPGTNGHNLTVNVLKSEPVLP---KNRAASPQLRQT---RIAECLVGD 83
KRKPVF KV+QLKPGT GH LTV V+++ V+P K R AS R + RI ECL+GD
Sbjct: 17 KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76
Query: 84 DTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKED 143
+TG ILFTARNDQVDLMKPG TVILRN++IDMFKG+MR+ VDKWGRIEAT A F VKED
Sbjct: 77 ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136
Query: 144 NNLSLVEYELVNV 156
NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149
>sp|Q9BQ15|SOSB1_HUMAN SOSS complex subunit B1 OS=Homo sapiens GN=NABP2 PE=1 SV=1
Length = 211
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND 95
T V +KPG NL VL++ V K + + C V D TG+I + +D
Sbjct: 5 TFVKDIKPGLKNLNLIFIVLETGRVT-KTKDGH------EVRTCKVADKTGSINISVWDD 57
Query: 96 QVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLS 147
+L++PG + L +FKG + + + G ++ V E N S
Sbjct: 58 VGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFS 109
>sp|Q3SWT1|SOSB1_RAT SOSS complex subunit B1 OS=Rattus norvegicus GN=Nabp2 PE=2 SV=1
Length = 211
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND 95
T V +KPG NL VL++ V K + + C V D TG+I + +D
Sbjct: 5 TFVKDIKPGLKNLNLIFIVLETGRVT-KTKDGH------EVRTCKVADKTGSINISVWDD 57
Query: 96 QVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLS 147
+L++PG + L +FKG + + + G ++ V E N S
Sbjct: 58 VGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFS 109
>sp|A6QLK2|SOSB1_BOVIN SOSS complex subunit B1 OS=Bos taurus GN=NABP2 PE=2 SV=1
Length = 211
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Query: 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND 95
T V +KPG NL VL++ V K + + C V D TG+I + +D
Sbjct: 5 TFVKDIKPGLKNLNLIFIVLETGRVT-KTKDGH------EVRTCKVADKTGSINISVWDD 57
Query: 96 QVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLS 147
+L++PG + L +FKG + + + G ++ V E N S
Sbjct: 58 VGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFS 109
>sp|Q66K94|SOSB1_XENTR SOSS complex subunit B1 OS=Xenopus tropicalis GN=nabp2 PE=2 SV=1
Length = 203
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 79 CLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKF 138
C V D TG+I + +D + ++PG + L +FKG + + + G ++
Sbjct: 41 CKVADKTGSINISVWDDLGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCM 100
Query: 139 VVKEDNNLSLVEYELV 154
V E N S E +
Sbjct: 101 VYSEVPNFSEPNPEYI 116
>sp|Q8WW38|FOG2_HUMAN Zinc finger protein ZFPM2 OS=Homo sapiens GN=ZFPM2 PE=1 SV=3
Length = 1151
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 1 MATRTTKQQQKAQKQQQGSSSDTNAKVVEKRKPVF--TKVDQLKPGTNGHNLTVNVLKSE 58
+ TR+ Q + Q + +SSDT EK+ +F + +++P TN + + +KSE
Sbjct: 414 LLTRSELPQSQKAMQTKDASSDTELDKCEKKTQLFLTNQRPEIQPTTNKQSFSYTKIKSE 473
Query: 59 PVLPKNRAASP 69
P P+ A+SP
Sbjct: 474 PSSPR-LASSP 483
>sp|Q8R2Y9|SOSB1_MOUSE SOSS complex subunit B1 OS=Mus musculus GN=Nabp2 PE=2 SV=1
Length = 212
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 79 CLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKF 138
C V D TG+I + +D +L++PG + L +FKG + + + G ++
Sbjct: 41 CKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCM 100
Query: 139 VVKEDNNLS 147
V E N S
Sbjct: 101 VYSEVPNFS 109
>sp|Q96AH0|SOSB2_HUMAN SOSS complex subunit B2 OS=Homo sapiens GN=NABP1 PE=1 SV=1
Length = 204
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 76 IAECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEP 135
+ C V D TG+I + ++ L++PG + L M+KG + + + G ++
Sbjct: 42 VRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGE 101
Query: 136 AKFVVKEDNNLS 147
V E N S
Sbjct: 102 FCMVYSEVPNFS 113
>sp|A5D7P8|SOSB2_BOVIN SOSS complex subunit B2 OS=Bos taurus GN=NABP1 PE=2 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 32/72 (44%)
Query: 76 IAECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEP 135
+ C V D TG+I + ++ L++PG + L M+KG + + + G ++
Sbjct: 42 VRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGE 101
Query: 136 AKFVVKEDNNLS 147
V E N S
Sbjct: 102 FCMVYSELPNFS 113
>sp|Q6NRF9|SOB1B_XENLA SOSS complex subunit B1-B OS=Xenopus laevis GN=nabp2-b PE=2 SV=1
Length = 203
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 79 CLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKF 138
C V D TGTI + ++ + ++PG + L +FKG + + + G ++
Sbjct: 41 CKVADKTGTINISVWDEVGNFIQPGDIIRLTKGYASLFKGCLTLYTGRGGDLQKIGEFCM 100
Query: 139 VVKEDNNLS 147
V E N S
Sbjct: 101 VYSEVPNFS 109
>sp|Q6DE02|SOB1A_XENLA SOSS complex subunit B1-A OS=Xenopus laevis GN=nabp2-a PE=2 SV=1
Length = 203
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%)
Query: 79 CLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKF 138
C V D TG+I + ++ + ++PG + L +FKG + + + G ++
Sbjct: 41 CKVADKTGSINISVWDELGNFIQPGDIIRLSKGYASLFKGCLTLYTGRGGDLQKIGEFCM 100
Query: 139 VVKEDNNLSLVEYELV 154
V E N S E +
Sbjct: 101 VYSEVPNFSEPNPEYI 116
>sp|Q54X41|SOSSB_DICDI SOSS complex subunit B homolog OS=Dictyostelium discoideum
GN=DDB_G0279223 PE=3 SV=1
Length = 183
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 35 FTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARN 94
KV+++KP + N VL P K ++ I + LV D T +I T +
Sbjct: 3 LIKVNEIKPYSKNINCVFIVLDKGPPTKK--------KEGTIYQVLVADSTASINMTVWD 54
Query: 95 DQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLS 147
+ ++PG + L+ +++ + + V K G IE F E NLS
Sbjct: 55 ALGEQIQPGDILRLKGGYSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLS 107
>sp|C6Y4C0|YFMR_SCHPO Putative splicing factor C222.18 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC222.18 PE=2 SV=1
Length = 111
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 100 MKPGTTVILRNAKIDMFKGSMRIAVDKWGRI 130
KPG T+ +RN DM ++ A +KWGRI
Sbjct: 14 YKPGHTLYIRNFGTDMRARTLGQAFEKWGRI 44
>sp|Q5PRC7|SOSB2_DANRE SOSS complex subunit B2 OS=Danio rerio GN=nabp1 PE=2 SV=1
Length = 211
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 35/79 (44%)
Query: 76 IAECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEP 135
+ C V D +G+I + ++ L++PG + L ++KG + + + G ++
Sbjct: 43 VRSCRVADKSGSIAISVWDELGSLIQPGDIIRLTRGYASIWKGCLTLYTGRGGDLQKIGE 102
Query: 136 AKFVVKEDNNLSLVEYELV 154
V E N S EL+
Sbjct: 103 FCMVYSEVPNFSEPNPELL 121
>sp|B0D7T0|LCL3_LACBS Probable endonuclease LCL3 OS=Laccaria bicolor (strain S238N-H82 /
ATCC MYA-4686) GN=LCL3 PE=3 SV=1
Length = 281
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 89 LFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNL 146
LF RN ++L+K G I A + KG D++ RIEA AKFV K N+L
Sbjct: 198 LFRGRNVSLELLKAGWGTIYEQAGAEYAKGRK----DEYIRIEAE--AKFVTKIINSL 249
>sp|P10047|DCTB_RHILE C4-dicarboxylate transport sensor protein DctB OS=Rhizobium
leguminosarum GN=dctB PE=3 SV=1
Length = 622
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 49 NLTVNVLKSEPVLPKNRAASPQLRQ-TRIAECLVGDDTGTILFTARNDQVDLMKPGTTVI 107
++T+N VL K RA L Q T +A LVG+D GT F + +++++ GT
Sbjct: 63 DVTLNAALLRTVLEKYRALPFVLSQDTALAAALVGNDAGT--FERLSQKLEILAAGTKAA 120
Query: 108 LRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLSLVEY 151
+ ID K + ++ W EP FV N+ EY
Sbjct: 121 VIYV-ID--KDGIAVSASNW-----REPTSFV---GNDYRFREY 153
>sp|Q17R13|ACK1_BOVIN Activated CDC42 kinase 1 OS=Bos taurus GN=TNK2 PE=1 SV=1
Length = 1039
Score = 29.3 bits (64), Expect = 10.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 37 KVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDT 85
+V K G G +T+ EPV+P R +P L Q + C + D T
Sbjct: 554 RVPGTKAGRGGGEVTLIDFGEEPVVPAPRPCAPSLAQLAMDACSLLDKT 602
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,584,256
Number of Sequences: 539616
Number of extensions: 2116456
Number of successful extensions: 5748
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5721
Number of HSP's gapped (non-prelim): 35
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)