Query 031443
Match_columns 159
No_of_seqs 106 out of 431
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wjj_A Hypothetical protein F2 100.0 1.6E-42 5.5E-47 267.6 10.2 133 26-158 7-145 (145)
2 2k75_A Uncharacterized protein 99.9 4.9E-26 1.7E-30 166.3 10.9 96 34-137 2-97 (106)
3 3e0e_A Replication protein A; 99.9 5.8E-25 2E-29 158.0 10.0 93 36-133 3-96 (97)
4 2kbn_A Conserved protein; nucl 99.9 2.2E-24 7.6E-29 158.0 12.7 102 32-143 2-104 (109)
5 1o7i_A SSB, SSO2364, single st 99.9 1.8E-23 6.1E-28 154.7 14.1 102 35-140 2-103 (119)
6 3dm3_A Replication factor A; p 99.9 4.5E-23 1.5E-27 150.6 9.7 96 34-134 4-101 (105)
7 2k50_A Replication factor A re 99.8 5.6E-18 1.9E-22 123.5 10.8 98 34-135 6-107 (115)
8 1ynx_A Replication factor-A pr 99.6 2.5E-15 8.7E-20 110.2 9.8 98 34-135 3-111 (114)
9 1jmc_A Protein (replication pr 99.5 4E-14 1.4E-18 114.4 11.4 102 31-136 4-116 (246)
10 4gop_C Putative uncharacterize 99.3 1.4E-11 4.6E-16 107.9 11.6 97 35-135 3-110 (444)
11 1jmc_A Protein (replication pr 99.1 4.5E-11 1.5E-15 96.4 6.4 98 33-134 124-227 (246)
12 4gop_C Putative uncharacterize 99.1 1.7E-10 5.7E-15 101.0 9.2 99 33-135 119-227 (444)
13 4gop_B Putative uncharacterize 97.8 0.00014 4.8E-09 54.0 9.8 74 45-135 36-116 (136)
14 3kdf_D Replication protein A 3 97.7 0.00023 8E-09 52.5 9.6 74 46-136 32-112 (132)
15 1xjv_A Protection of telomeres 97.7 0.00027 9.3E-09 58.6 10.4 86 32-126 3-94 (294)
16 2pi2_A Replication protein A 3 97.4 0.00097 3.3E-08 54.8 9.8 73 47-136 73-152 (270)
17 1qzg_A Protection of telomeres 97.3 0.0013 4.5E-08 52.2 9.0 92 31-127 25-128 (187)
18 4hik_A Protection of telomeres 97.2 0.00049 1.7E-08 52.4 5.0 91 33-126 3-110 (143)
19 1xjv_A Protection of telomeres 97.1 0.00027 9.3E-09 58.6 3.1 92 34-126 144-262 (294)
20 1jb7_A Telomere-binding protei 97.1 0.0027 9.4E-08 56.7 9.7 90 30-126 33-140 (495)
21 3kf6_A Protein STN1; OB fold, 96.2 0.0082 2.8E-07 46.2 5.9 73 46-135 48-128 (159)
22 1jb7_A Telomere-binding protei 92.5 0.59 2E-05 41.7 9.2 87 32-131 208-297 (495)
23 3m4p_A Ehasnrs, asparaginyl-tR 90.9 1.6 5.5E-05 38.3 10.1 99 23-133 7-122 (456)
24 2xvs_A Tetratricopeptide repea 88.9 2.5 8.4E-05 32.7 8.5 99 7-116 23-136 (166)
25 3nem_A Aspartyl-tRNA synthetas 87.5 2.2 7.5E-05 37.3 8.3 84 37-133 6-101 (438)
26 1txy_A Primosomal replication 87.2 2.1 7.1E-05 29.8 6.6 64 45-115 2-81 (104)
27 3rlo_A Gamma-interferon-induci 87.1 4.4 0.00015 32.2 9.1 76 50-134 12-88 (204)
28 3f2b_A DNA-directed DNA polyme 86.1 2.1 7.2E-05 41.5 8.1 86 33-126 5-97 (1041)
29 1n9w_A Aspartyl-tRNA synthetas 85.9 5.3 0.00018 34.6 9.9 88 38-141 5-97 (422)
30 3rn5_A Interferon-inducible pr 84.2 4.1 0.00014 32.5 7.6 78 49-134 14-92 (208)
31 3rn5_A Interferon-inducible pr 83.4 7.7 0.00026 30.9 8.9 85 36-133 111-198 (208)
32 3au7_A TIAS, putative uncharac 83.4 3.1 0.00011 36.2 7.2 76 36-128 276-357 (402)
33 2v31_A Ubiquitin-activating en 82.8 2.9 9.8E-05 30.1 5.8 60 82-148 26-85 (112)
34 3koj_A Uncharacterized protein 80.2 2.3 7.8E-05 30.3 4.4 64 44-113 10-84 (108)
35 2xgt_A Asparaginyl-tRNA synthe 79.6 9.6 0.00033 33.0 9.0 84 37-132 2-96 (435)
36 1wyd_A Hypothetical aspartyl-t 79.3 7.8 0.00027 33.6 8.4 83 38-133 7-98 (429)
37 1e1o_A Lysyl-tRNA synthetase, 79.2 8.1 0.00028 34.3 8.6 75 46-133 65-148 (504)
38 3i7f_A Aspartyl-tRNA synthetas 79.1 8.9 0.0003 34.6 8.9 97 32-141 47-162 (548)
39 2oq0_A Gamma-interferon-induci 78.8 23 0.00078 28.2 10.6 88 35-133 114-202 (206)
40 1nnx_A Protein YGIW; structura 78.5 7.1 0.00024 28.0 6.6 66 44-126 36-103 (109)
41 3en2_A Probable primosomal rep 76.4 16 0.00056 25.5 7.9 74 45-125 2-92 (101)
42 3bju_A Lysyl-tRNA synthetase; 75.7 10 0.00036 33.7 8.3 75 46-133 56-141 (521)
43 1eov_A ASPRS, aspartyl-tRNA sy 75.6 17 0.00057 32.0 9.5 88 33-133 21-130 (487)
44 1gm5_A RECG; helicase, replica 74.0 1.6 5.6E-05 40.6 2.7 70 35-114 156-229 (780)
45 1x54_A Asparaginyl-tRNA synthe 73.0 8.7 0.0003 33.3 6.9 84 37-133 6-101 (434)
46 1z9f_A Single-strand binding p 72.4 4.9 0.00017 30.1 4.6 66 42-114 13-95 (153)
47 1l0w_A Aspartyl-tRNA synthetas 72.0 14 0.00047 33.4 8.2 82 46-140 17-110 (580)
48 3k8a_A Putative primosomal rep 70.8 22 0.00076 24.7 7.5 74 46-126 8-97 (103)
49 3vdy_A SSB, single-stranded DN 70.4 6.7 0.00023 27.5 4.7 63 45-114 5-82 (116)
50 1qvc_A Single stranded DNA bin 69.9 5.1 0.00017 29.5 4.1 63 45-114 5-85 (145)
51 4ex5_A Lysine--tRNA ligase; st 69.4 12 0.00041 33.5 7.1 75 46-133 87-169 (529)
52 3afp_A Single-stranded DNA-bin 68.8 9.2 0.00032 28.9 5.5 64 44-114 3-85 (168)
53 3rlo_A Gamma-interferon-induci 67.8 20 0.00067 28.5 7.2 87 36-133 107-195 (204)
54 2vw9_A Single-stranded DNA bin 66.5 9.5 0.00032 27.7 4.9 63 45-114 2-81 (134)
55 3a74_A Lysyl-tRNA synthetase; 65.5 12 0.00041 33.1 6.3 75 46-133 57-139 (493)
56 3fhw_A Primosomal replication 64.7 17 0.00058 26.0 5.9 75 45-126 1-92 (115)
57 4gs3_A Single-stranded DNA-bin 63.3 37 0.0013 24.0 8.0 61 46-113 12-79 (107)
58 1c0a_A Aspartyl tRNA synthetas 62.7 21 0.00072 32.1 7.4 75 46-133 16-105 (585)
59 2hpi_A DNA polymerase III alph 61.6 7.2 0.00025 38.4 4.4 80 37-126 1028-1117(1220)
60 3ulp_A Single-strand binding p 61.5 6.2 0.00021 28.1 3.1 63 45-114 6-87 (124)
61 2vl6_A SSO MCM N-TER, minichro 59.6 11 0.00037 30.1 4.6 32 87-118 212-243 (268)
62 1l1o_C Replication protein A 7 58.0 5.2 0.00018 30.5 2.2 24 74-97 78-101 (181)
63 3ull_A DNA binding protein; DN 57.3 9.5 0.00032 27.5 3.5 64 44-114 13-100 (132)
64 2oq0_A Gamma-interferon-induci 57.2 57 0.002 25.9 8.2 78 50-134 18-96 (206)
65 2fxq_A Single-strand binding p 57.1 16 0.00055 29.2 5.2 64 44-114 127-203 (264)
66 3tqy_A Single-stranded DNA-bin 56.6 10 0.00035 28.4 3.7 64 44-114 7-88 (158)
67 1v1q_A Primosomal replication 55.0 27 0.00093 25.6 5.7 62 46-114 20-97 (134)
68 4dam_A Single-stranded DNA-bin 54.6 16 0.00056 26.3 4.4 62 45-114 15-95 (128)
69 1ltl_A DNA replication initiat 54.4 14 0.00048 29.8 4.4 31 87-117 199-229 (279)
70 3u50_C Telomerase-associated p 54.3 5.6 0.00019 30.6 1.8 25 74-98 74-98 (172)
71 3eiv_A Single-stranded DNA-bin 54.2 20 0.00068 28.1 5.1 63 45-114 4-85 (199)
72 1miu_A BRCA2, breast cancer ty 54.1 40 0.0014 31.6 7.8 82 41-134 607-691 (738)
73 1se8_A Single-strand binding p 54.0 12 0.00041 30.9 4.0 64 44-114 128-207 (301)
74 1eqq_A Single stranded DNA bin 53.3 5.6 0.00019 30.5 1.7 63 45-114 6-86 (178)
75 3k7u_C MP18 RNA editing comple 52.8 29 0.00099 25.8 5.6 62 44-114 5-85 (148)
76 3ebe_A Protein MCM10 homolog; 51.1 23 0.00079 27.7 5.0 81 47-134 57-146 (200)
77 1miu_A BRCA2, breast cancer ty 49.3 13 0.00045 34.8 3.8 48 87-134 526-581 (738)
78 2do3_A Transcription elongatio 47.8 35 0.0012 22.5 4.8 36 95-140 13-48 (69)
79 4abn_A Tetratricopeptide repea 45.8 55 0.0019 27.3 6.9 70 35-115 355-427 (474)
80 2fxq_A Single-strand binding p 45.1 28 0.00097 27.7 4.8 62 45-113 5-83 (264)
81 3lgj_A Single-stranded DNA-bin 44.9 16 0.00055 27.7 3.1 83 45-134 23-133 (169)
82 3u58_A Tetrahymena TEB1 AB; te 42.6 1.1E+02 0.0037 23.2 7.7 86 37-130 13-104 (213)
83 3pgz_A Single-stranded DNA-bin 37.3 28 0.00094 27.2 3.4 83 45-134 26-136 (193)
84 3e0j_A DNA polymerase subunit 36.5 68 0.0023 28.3 6.2 36 78-114 139-174 (476)
85 1uhe_A Aspartate 1-decarboxyla 35.0 92 0.0031 21.8 5.5 34 74-109 29-62 (97)
86 3plx_B Aspartate 1-decarboxyla 31.7 1.1E+02 0.0037 21.7 5.5 33 75-109 31-63 (102)
87 3u4v_A Telomerase-associated p 31.1 1.3E+02 0.0046 20.9 10.7 81 37-124 17-103 (117)
88 3cp0_A Membrane protein implic 31.0 32 0.0011 22.4 2.5 37 73-110 28-70 (82)
89 2qf4_A Cell shape determining 30.7 1.7E+02 0.0057 21.8 7.7 77 76-156 84-165 (172)
90 2k14_A YUAF protein; NFED-like 30.5 22 0.00075 23.5 1.6 28 83-110 34-70 (84)
91 3u5c_c S33, YS27, 40S ribosoma 28.5 1E+02 0.0035 20.2 4.5 50 50-111 8-59 (67)
92 3k81_C MP18 RNA editing comple 27.3 53 0.0018 25.0 3.5 65 40-113 17-100 (164)
93 2j5u_A MREC protein; bacterial 25.3 2.5E+02 0.0086 22.1 8.2 112 40-156 96-226 (255)
94 1wi5_A RRP5 protein homolog; S 23.1 1.6E+02 0.0054 20.2 5.2 75 36-126 14-94 (119)
95 1se8_A Single-strand binding p 22.3 74 0.0025 26.1 3.7 66 45-117 5-89 (301)
96 4ah6_A Aspartate--tRNA ligase, 22.3 1.3E+02 0.0045 27.3 5.6 64 78-141 41-121 (617)
97 3f9v_A Minichromosome maintena 22.1 59 0.002 28.9 3.2 31 87-117 206-236 (595)
98 2k52_A Uncharacterized protein 21.8 83 0.0028 20.1 3.2 28 98-125 44-71 (80)
99 4a1k_A Putative L, D-transpept 21.7 9.8 0.00034 28.5 -1.7 26 84-109 137-164 (165)
100 4dni_A Fusion protein of RNA-e 20.7 69 0.0024 25.9 3.1 72 34-114 130-225 (257)
101 3lwc_A Uncharacterized protein 20.6 44 0.0015 23.2 1.7 27 86-113 68-94 (119)
No 1
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=100.00 E-value=1.6e-42 Score=267.57 Aligned_cols=133 Identities=67% Similarity=1.009 Sum_probs=125.5
Q ss_pred cccccCCCceeecccCCCCCCCceEEEEEEecCccc---ccccCCCCC---CCcceEEEEEEeeCceeEEEEEecCCcCC
Q 031443 26 KVVEKRKPVFTKVDQLKPGTNGHNLTVNVLKSEPVL---PKNRAASPQ---LRQTRIAECLVGDDTGTILFTARNDQVDL 99 (159)
Q Consensus 26 ~~~~l~~~~~~kI~dL~P~~~~vnv~~kVL~i~~~~---~~~R~DG~~---~~~~~V~~~lVgDeTG~I~ltlWde~~~~ 99 (159)
.++++++|.|+||+||+|++++++++++||++++++ +++|+||++ .++++|++++||||||+|+||+|+++++.
T Consensus 7 ~~~~~~kp~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e~~~~ 86 (145)
T 1wjj_A 7 GSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDL 86 (145)
T ss_dssp CCCCCCCCSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTTHHHH
T ss_pred CCccccCccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecCCcCc
Confidence 467899999999999999999999999999999988 889999861 23699999999999999999999999889
Q ss_pred CCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCCCcEEEccCCCccccceeeeeeec
Q 031443 100 MKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLSLVEYELVNVVE 158 (159)
Q Consensus 100 i~~Gdvv~I~na~v~~~~G~~~L~vgk~g~I~~~~~~~~~vne~~N~S~ieye~v~~~~ 158 (159)
+++||+|+|+|||+++|+|+|+|++|+||+|+++++++|+||+.+|||++|||+++|++
T Consensus 87 l~~Gd~v~i~na~v~~~~G~~~L~vgk~g~Ie~~~e~~~~v~e~~n~S~~e~e~~~~~~ 145 (145)
T 1wjj_A 87 MKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYESGPSSG 145 (145)
T ss_dssp TCTTCEEEEEEEEEEEETTEEEEEECTTCCBCCCSCCCSCCCTTSBTTTSCCSSCCSCC
T ss_pred CCCCCEEEEeccEEEeECCEEEEEECCCEEEEECCCCcEEEecCCCcCcceEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999875
No 2
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=99.93 E-value=4.9e-26 Score=166.27 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=87.2
Q ss_pred ceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCCCCCCCEEEEeceEE
Q 031443 34 VFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKI 113 (159)
Q Consensus 34 ~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~i~~Gdvv~I~na~v 113 (159)
.++||+||+|++++++++++|+++++++ . +++|+ ++++++++|||+||+|+|++|+++ +++||+|+|+||++
T Consensus 2 ~~~kI~dl~pg~~~v~v~~~V~~~~~~~-~-~k~G~---~~~v~~~~l~DeTG~I~~tlW~~~---l~~Gdvv~i~ng~v 73 (106)
T 2k75_A 2 DLVKIRDVSLSTPYVSVIGKITGIHKKE-Y-ESDGT---TKSVYQGYIEDDTARIRISSFGKQ---LQDSDVVRIDNARV 73 (106)
T ss_dssp CBCCSTTCCTTCSEEEEEEEEEEEEEEE-E-EETTE---EEEEEEEEEECSSCEEEEEEESSC---CCTTEEEEEEEEEE
T ss_pred CcEEHHHcCCCCceEEEEEEEEEccccc-c-ccCCC---eeEEEEEEEEcCCCeEEEEEEcCc---cCCCCEEEEEeeEE
Confidence 4789999999999999999999999886 3 34663 478999999999999999999987 99999999999999
Q ss_pred ceeCCeEEEEeCCceeEEEcCCCc
Q 031443 114 DMFKGSMRIAVDKWGRIEATEPAK 137 (159)
Q Consensus 114 ~~~~G~~~L~vgk~g~I~~~~~~~ 137 (159)
++|+|.|+|+++++|.|++++++.
T Consensus 74 ~~~~g~~~L~v~~~~~I~~~~~~~ 97 (106)
T 2k75_A 74 AQFNGYLSLSVGDSSRIESVNVNI 97 (106)
T ss_dssp EEETTEEEEEECTTSEEEECCSCC
T ss_pred eEECCEEEEEECCcEEEEECCCCC
Confidence 999999999999999999997553
No 3
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=99.92 E-value=5.8e-25 Score=158.02 Aligned_cols=93 Identities=24% Similarity=0.338 Sum_probs=81.8
Q ss_pred eecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCC-CCCCCEEEEeceEEc
Q 031443 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDL-MKPGTTVILRNAKID 114 (159)
Q Consensus 36 ~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~-i~~Gdvv~I~na~v~ 114 (159)
.||+||+|+ .+++++++|++++++++|.|+||+. ++++++.|+|+||+|++++|+++++. +++||+|+| +|+++
T Consensus 3 ~kI~dl~~g-~~v~i~~~V~~~~~~r~~~~~~G~~---~~v~~~~l~DeTG~I~~tlW~~~~~~~i~~Gdvv~i-~g~v~ 77 (97)
T 3e0e_A 3 YKISELMPN-LSGTINAEVVTAYPKKEFSRKDGTK---GQLKSLFLKDDTGSIRGTLWNELADFEVKKGDIAEV-SGYVK 77 (97)
T ss_dssp ECGGGCCTT-EEEEEEEEEEEECCCEEEC----CC---EEEEEEEEEETTEEEEEEEEGGGGGCCCCTTCEEEE-EEEEE
T ss_pred eEHHHCCCC-CcEEEEEEEEECCCceEEEcCCCCe---eEEEEEEEECCCCcEEEEEECCccccccCCCCEEEE-EEEEE
Confidence 589999999 7899999999999999999999854 89999999999999999999999885 999999999 99999
Q ss_pred eeCCeEEEEeCCceeEEEc
Q 031443 115 MFKGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 115 ~~~G~~~L~vgk~g~I~~~ 133 (159)
+|.|.++|++|++|.|++.
T Consensus 78 ~~~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 78 QGYSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EC--CEEEEEEEEEEEECC
T ss_pred EcCCeEEEEECCCcEEEEC
Confidence 9999999999999999863
No 4
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=99.92 E-value=2.2e-24 Score=158.05 Aligned_cols=102 Identities=24% Similarity=0.319 Sum_probs=89.9
Q ss_pred CCceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEec-CCcCCCCCCCEEEEec
Q 031443 32 KPVFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARN-DQVDLMKPGTTVILRN 110 (159)
Q Consensus 32 ~~~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWd-e~~~~i~~Gdvv~I~n 110 (159)
.|.+.||+||+|+..+++++++|+++++++ .| .....++|||+||+|+|++|+ ++++.+++|++|+|+|
T Consensus 2 ~~~~~kI~dl~~~~~~v~v~~~V~~~~~~~-----~~-----~~~~~~~l~DeTG~I~~t~W~~~~~~~~~~G~~V~i~n 71 (109)
T 2kbn_A 2 EPQLTKIVDIVENGQWANLKAKVIQLWENT-----HE-----SISQVGLLGDETGIIKFTIWKNAELPLLEQGESYLLRS 71 (109)
T ss_dssp CCCBCCTTTCCSTTCEEEEEEEEEEEEECC-----CS-----SEEEEEEEECTTCCEEEEEEGGGCCCCCCTTCEEEEEE
T ss_pred CCCceEHHHCCCCCCcEEEEEEEEEeEcCC-----CC-----eEEEEEEEECCCCeEEEEEECcccccccCCCCEEEEEE
Confidence 356889999999999999999999999743 12 456779999999999999999 7888899999999999
Q ss_pred eEEceeCCeEEEEeCCceeEEEcCCCcEEEccC
Q 031443 111 AKIDMFKGSMRIAVDKWGRIEATEPAKFVVKED 143 (159)
Q Consensus 111 a~v~~~~G~~~L~vgk~g~I~~~~~~~~~vne~ 143 (159)
|++++|+|+++|+++++|.|+..+++.+.+.+.
T Consensus 72 ~~v~~~~G~~~L~v~~~~~I~~~~~~~~~~~~~ 104 (109)
T 2kbn_A 72 VVVGEYNDRFQVQVNKNSSIEKLSEPIEVGLEH 104 (109)
T ss_dssp EEEEEETTEEEEEECSSSEEEECSSCCCCCCSS
T ss_pred EEEEEECCEEEEEECCceEEEECCCcccccccc
Confidence 999999999999999999999998766555554
No 5
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=99.91 E-value=1.8e-23 Score=154.68 Aligned_cols=102 Identities=27% Similarity=0.388 Sum_probs=94.1
Q ss_pred eeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCCCCCCCEEEEeceEEc
Q 031443 35 FTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKID 114 (159)
Q Consensus 35 ~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~i~~Gdvv~I~na~v~ 114 (159)
|++|+||.|++.++++.++|+++++++++.+++|+ +.+++++|+|+||+|++++|++.++.+++|++|+|.||+++
T Consensus 2 f~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~----~~~~~~~l~D~TG~I~~tlW~~~~~~~~~G~vv~i~~g~v~ 77 (119)
T 1o7i_A 2 EEKVGNLKPNMESVNVTVRVLEASEARQIQTKNGV----RTISEAIVGDETGRVKLTLWGKHAGSIKEGQVVKIENAWTT 77 (119)
T ss_dssp BCCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCC----EEEEEEEEEETTEEEEEEEEGGGTTCCCTTCEEEEEEEEEE
T ss_pred cEEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCC----EEEEEEEEEeCCCEEEEEEECChhhcCCCCCEEEEEeEEEE
Confidence 67899999999999999999999998877777762 68999999999999999999998888999999999999999
Q ss_pred eeCCeEEEEeCCceeEEEcCCCcEEE
Q 031443 115 MFKGSMRIAVDKWGRIEATEPAKFVV 140 (159)
Q Consensus 115 ~~~G~~~L~vgk~g~I~~~~~~~~~v 140 (159)
+|+|.++|+++++|.|++.++++|..
T Consensus 78 ~~~g~~qL~i~~~~~i~~~~~~~~~~ 103 (119)
T 1o7i_A 78 AFKGQVQLNAGSKTKIAEASEDGFPE 103 (119)
T ss_dssp EETTEEEEEECTTCEEEECCCTTCCC
T ss_pred EeCCEEEEEECCCEEEEEcCCcCCCc
Confidence 99999999999999999998877653
No 6
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=4.5e-23 Score=150.60 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=89.2
Q ss_pred ceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcC-CCCCCCEEEEeceE
Q 031443 34 VFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVD-LMKPGTTVILRNAK 112 (159)
Q Consensus 34 ~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~-~i~~Gdvv~I~na~ 112 (159)
.++||+||.|+ .++++.++|++++++++|.|+||+. ++++++.|+|+||+|++|||+++++ .+++||+|.| +||
T Consensus 4 ~~~~I~dL~~~-~~v~v~g~V~~~~~~r~~~~~~G~~---~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i-~g~ 78 (105)
T 3dm3_A 4 DTYNIGELSPG-MTATFEGEVISALPIKEFKRADGSI---GKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRV-RGY 78 (105)
T ss_dssp CEECGGGCCSS-EEEEEEEEEEEEEEEEEEECTTSCE---EEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEE-EEE
T ss_pred cceEHHHCCCC-CeEEEEEEEEECCCceEEEcCCCCe---eEEEEEEEECCCCcEEEEEECcccccccCCCCEEEE-EEE
Confidence 58999999999 7899999999999999999999854 9999999999999999999999887 5999999999 999
Q ss_pred Ecee-CCeEEEEeCCceeEEEcC
Q 031443 113 IDMF-KGSMRIAVDKWGRIEATE 134 (159)
Q Consensus 113 v~~~-~G~~~L~vgk~g~I~~~~ 134 (159)
++++ .|.++|++|+.|.|++.+
T Consensus 79 vk~~~~g~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 79 IREGYYGGLECTANYVEILKKGE 101 (105)
T ss_dssp EEECTTSSEEEEEEEEEEEECCC
T ss_pred EEEccCCCEEEEeCCceEEEecc
Confidence 9998 469999999999999885
No 7
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=99.76 E-value=5.6e-18 Score=123.51 Aligned_cols=98 Identities=16% Similarity=0.320 Sum_probs=87.0
Q ss_pred ceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcC---CCCCCCEEEEec
Q 031443 34 VFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVD---LMKPGTTVILRN 110 (159)
Q Consensus 34 ~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~---~i~~Gdvv~I~n 110 (159)
.+++|++|.|+.. +++.++|+++++++++.+++|+ ++.++++.|+|+||.|++++|++.++ .+++|++|.|.|
T Consensus 6 ~~~~I~~L~~g~~-v~i~~~V~~~~~~~~~~~k~G~---~~~~~~~~l~D~TG~I~~t~w~~~~~~~~~l~~G~vv~i~g 81 (115)
T 2k50_A 6 RMDTISKLEEGAE-TPVTGRVMKISSPRTFTTRKGR---EGKLANVIIADDTGELRAVFWTENIKLLKKFREGDVIRIKD 81 (115)
T ss_dssp CCCCTTTCCTTCE-EEEEEEEEEECCCEECCCTTSS---CCEEEEEEEEETTEEEEEEEETTGGGGGGTCCTTSEEEEEE
T ss_pred ceEEHHHCCCCCE-eEEEEEEEECCCceEEEcCCCC---EEEEEEEEEEeCCCeEEEEEeCchhhhhhcCCCCCEEEEEe
Confidence 4688999999876 6999999999988877666663 37899999999999999999997654 689999999999
Q ss_pred eEEce-eCCeEEEEeCCceeEEEcCC
Q 031443 111 AKIDM-FKGSMRIAVDKWGRIEATEP 135 (159)
Q Consensus 111 a~v~~-~~G~~~L~vgk~g~I~~~~~ 135 (159)
++++. |+|.++|++++++.|++.++
T Consensus 82 ~~v~~~f~g~~qL~~~~~~~i~~~~~ 107 (115)
T 2k50_A 82 VNIRGGFGGRKEAHLMPRSTVEVLDP 107 (115)
T ss_dssp EEECCCSSSSCEEEECTTCCEEEESS
T ss_pred eEEccccCCeEEEEECCCceEEECCc
Confidence 99987 99999999999999999864
No 8
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.5e-15 Score=110.21 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=87.6
Q ss_pred ceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCC----CCCCCEEEEe
Q 031443 34 VFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDL----MKPGTTVILR 109 (159)
Q Consensus 34 ~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~----i~~Gdvv~I~ 109 (159)
.+++|++|.|++.+.+|+|+|+.++++++|.+.+| ++++.++.|.|++|.|+.++|+++++. |++|+++.|.
T Consensus 3 ~~~~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~----~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is 78 (114)
T 1ynx_A 3 PIFAIEQLSPYQNVWTIKARVSYKGEIKTWHNQRG----DGKLFNVNFLDTSGEIRATAFNDFATKFNEILQEGKVYYVS 78 (114)
T ss_dssp CBCCGGGCCTTTCCCEEEEEEEEEEEEEEEECSSC----EEEEEEEEEEETTEEEEEEECHHHHHHHHHHSCSSSEEEEE
T ss_pred ceEEHHHCCCCCCceEEEEEEEEeccceEEecCCC----CceEEEEEEECCCCeEEEEECHHHHHHHHhhcccCcEEEEC
Confidence 57899999999999999999999999999886554 589999999999999999999986644 7999999999
Q ss_pred ceEEcee-------CCeEEEEeCCceeEEEcCC
Q 031443 110 NAKIDMF-------KGSMRIAVDKWGRIEATEP 135 (159)
Q Consensus 110 na~v~~~-------~G~~~L~vgk~g~I~~~~~ 135 (159)
++.++.- ....+|.+++++.|++.+|
T Consensus 79 ~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~d 111 (114)
T 1ynx_A 79 KAKLQPAKPQFTNLTHPYELNLDRDTVIEECFD 111 (114)
T ss_dssp SCEEEECCTTTSSSSSCEEEEECSSCEEEESCC
T ss_pred CcEEEECCCCcccCCCCEEEEECCCCEEEECCC
Confidence 9999872 4688999999999999865
No 9
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.54 E-value=4e-14 Score=114.40 Aligned_cols=102 Identities=14% Similarity=0.198 Sum_probs=88.8
Q ss_pred CCCceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCc----CCCCCCCEE
Q 031443 31 RKPVFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQV----DLMKPGTTV 106 (159)
Q Consensus 31 ~~~~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~----~~i~~Gdvv 106 (159)
....+++|++|.|++.+.+|+|+|+.++++++|.+.+| ++++.+++++|++|.|++++|++++ +.|++|+++
T Consensus 4 ~~~~~~~I~~L~p~~~~w~I~~rV~~k~~~r~~~~~~~----~g~~~~~~L~De~G~I~at~~~~~~~~~~~~l~~G~vy 79 (246)
T 1jmc_A 4 MQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRG----EGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNKVY 79 (246)
T ss_dssp ---CBCCGGGCCTTCCCCEEEEEEEEECCCEEEECSSC----EEEEEEEEEECSSCEEEEEEEHHHHHHHGGGCCTTCEE
T ss_pred cccceEEHHHCCCCCCceEEEEEEEEecccceeeCCCC----CceEEEEEEECCCCeEEEEEChHHHHHhhhhcccCCEE
Confidence 44578999999999999999999999999998876553 5899999999999999999999765 558999999
Q ss_pred EEeceEEcee-------CCeEEEEeCCceeEEEcCCC
Q 031443 107 ILRNAKIDMF-------KGSMRIAVDKWGRIEATEPA 136 (159)
Q Consensus 107 ~I~na~v~~~-------~G~~~L~vgk~g~I~~~~~~ 136 (159)
.|.|+.++.. .+.++|.++.++.|++.++.
T Consensus 80 ~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~~~~ 116 (246)
T 1jmc_A 80 YFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCEDD 116 (246)
T ss_dssp EEECCEEEECCGGGCCCCCSEEEECCTTCEEEECCSC
T ss_pred EECCCEEEEcccCcccCCCCEEEEEcCCcEEEEccCc
Confidence 9999999875 57899999999999998643
No 10
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.30 E-value=1.4e-11 Score=107.93 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=86.6
Q ss_pred eeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCc----CCCCCCCEEEEec
Q 031443 35 FTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQV----DLMKPGTTVILRN 110 (159)
Q Consensus 35 ~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~----~~i~~Gdvv~I~n 110 (159)
+++|++|.|++.+..|+|+|+.++++++|.+.+| ++++.+++|+|++|.|+.++|++.+ +.|++|+++.|.|
T Consensus 3 ~~~I~~L~p~~~~w~I~~rV~~k~~ir~~~~~~~----~g~~~~~~L~De~G~I~at~~~~~~~~f~~~l~eG~vy~Is~ 78 (444)
T 4gop_C 3 IYPIEGLSPYQNRWTIKARVTSKSDIRHWSNQRG----EGKLFSVNLLDDSGEIKATGFNDAVDRFYPLLQENHVYLISK 78 (444)
T ss_dssp CCCSTTCCTTCCSCEEEEECCEECCCEEEECSSC----EEEEEEEEEECSSCEEEEEEETHHHHHHTTTCCTTCEEEEES
T ss_pred ceeHHHCCCCCcceEEEEEEEEccCcceecCCCC----CceEEEEEEEcCCCEEEEEEeHHHHHHHHHheecCCEEEEcC
Confidence 7899999999999999999999999999887554 4789999999999999999999744 5689999999999
Q ss_pred eEEceeC-------CeEEEEeCCceeEEEcCC
Q 031443 111 AKIDMFK-------GSMRIAVDKWGRIEATEP 135 (159)
Q Consensus 111 a~v~~~~-------G~~~L~vgk~g~I~~~~~ 135 (159)
+.++..+ ...+|.++.++.|++.++
T Consensus 79 ~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~~d 110 (444)
T 4gop_C 79 ARVNIAKKQFSNLQNEYEITFENSTEIEECTD 110 (444)
T ss_dssp CEEEECCGGGCSCCCSEEEEECTTCEEEECSC
T ss_pred CEEEecCCccccCCCCEEEEEcCCcEEEEccC
Confidence 9998754 478999999999999864
No 11
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=99.15 E-value=4.5e-11 Score=96.39 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=81.6
Q ss_pred CceeecccCCC--CCCCceEEEEEEecCcccccccC-CCCCCCcceEEEEEEeeCce-eEEEEEecCCcCC--CCCCCEE
Q 031443 33 PVFTKVDQLKP--GTNGHNLTVNVLKSEPVLPKNRA-ASPQLRQTRIAECLVGDDTG-TILFTARNDQVDL--MKPGTTV 106 (159)
Q Consensus 33 ~~~~kI~dL~P--~~~~vnv~~kVL~i~~~~~~~R~-DG~~~~~~~V~~~lVgDeTG-~I~ltlWde~~~~--i~~Gdvv 106 (159)
-.|++|.+|.+ ....+++.+.|++++++.++.++ +|+ ....+++.|.|+|| +|+++||++++.. ..+|++|
T Consensus 124 ~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~~~~k~~g~---~~~~r~~~l~D~sg~~i~~tLWg~~a~~~~~~~~~vv 200 (246)
T 1jmc_A 124 FDFTGIDDLENKSKDSLVDIIGICKSYEDATKITVRSNNR---EVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVL 200 (246)
T ss_dssp CCBCCGGGGGGSCTTCEEEEEEEEEEECCCEEEEETTTTE---EEEEEEEEEECTTCCEEEEEEEHHHHHHCCCTTCCEE
T ss_pred eeeEEHHHHhcccCCCceeEEEEEEEecCeEEEEEecCCC---ccEEEEEEEECCCCCEEEEEEEchhhhhcccCCCCEE
Confidence 35888999874 23458999999999998887765 664 48899999999999 5999999987653 5789999
Q ss_pred EEeceEEceeCCeEEEEeCCceeEEEcC
Q 031443 107 ILRNAKIDMFKGSMRIAVDKWGRIEATE 134 (159)
Q Consensus 107 ~I~na~v~~~~G~~~L~vgk~g~I~~~~ 134 (159)
.|.+++++.| |.++|+++..+.|...|
T Consensus 201 ~i~~~~v~~f-~g~~ls~~~~s~i~inp 227 (246)
T 1jmc_A 201 AIKGARVSDF-GGRSLSVLSSSTIIANP 227 (246)
T ss_dssp EEEEEEEECT-TSSEEECCSSCEEESSC
T ss_pred EEEEEEEEec-CCeEEEecCcceEEECC
Confidence 9999999999 45899999999997554
No 12
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=99.12 E-value=1.7e-10 Score=100.99 Aligned_cols=99 Identities=8% Similarity=0.108 Sum_probs=84.5
Q ss_pred CceeecccCCC--CCCCceEEEEEEecCcccccccC-CCCCCCcceEEEEEEeeCce-eEEEEEecCCcCC------CCC
Q 031443 33 PVFTKVDQLKP--GTNGHNLTVNVLKSEPVLPKNRA-ASPQLRQTRIAECLVGDDTG-TILFTARNDQVDL------MKP 102 (159)
Q Consensus 33 ~~~~kI~dL~P--~~~~vnv~~kVL~i~~~~~~~R~-DG~~~~~~~V~~~lVgDeTG-~I~ltlWde~~~~------i~~ 102 (159)
-.|++|.+|.. ....++|.+.|++++++.++.++ +|. ....+++.|.|+|| +|+++||++++.. ...
T Consensus 119 ~~f~~i~~i~~~~~~~~vDViG~V~~v~~~~~i~~k~~g~---~~~kr~i~L~D~sg~~i~~tLWg~~A~~f~~~~~~~~ 195 (444)
T 4gop_C 119 YEFVRINELESVEANQQCDVIGILDSYGELSEIVSKASQR---PVQKRELTLVDQGNRSVKLTLWGKTAETFPTNAGVDE 195 (444)
T ss_dssp CCBCCGGGGGGSCSSCCCBEEEEEEEECCCEEECCTTTCS---CEEEEEEEEECTTCBEEEEEEEHHHHHTSTTSTTSSS
T ss_pred ecccCHHHHhccCCCCceEEEEEEEEcCCcEEEEEccCCc---eeeEEEEEEEeCCCCEEEEEEEhhhhhhhhhhhccCC
Confidence 35889999985 34458999999999998887765 664 48999999999999 9999999987654 568
Q ss_pred CCEEEEeceEEceeCCeEEEEeCCceeEEEcCC
Q 031443 103 GTTVILRNAKIDMFKGSMRIAVDKWGRIEATEP 135 (159)
Q Consensus 103 Gdvv~I~na~v~~~~G~~~L~vgk~g~I~~~~~ 135 (159)
|++|.|.+++++.|+|. .|+++..++|...|+
T Consensus 196 ~~VV~i~~~kV~~f~G~-~ls~~~~s~i~inPd 227 (444)
T 4gop_C 196 KPVLAFKGVKVGDFGGR-SLSMFSSSTMLINPD 227 (444)
T ss_dssp CCEEEEESCEEECTTSS-EEECCTTCEEEESCS
T ss_pred CCEEEEEeEEEeecCCe-EEeccccceEEECCC
Confidence 99999999999999996 999999999987764
No 13
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=97.84 E-value=0.00014 Score=53.99 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=60.1
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC-------cCCCCCCCEEEEeceEEceeC
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ-------VDLMKPGTTVILRNAKIDMFK 117 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~-------~~~i~~Gdvv~I~na~v~~~~ 117 (159)
-+.|.+.++|.++.+. ..-....|.|.||.|...+|++. ...+++|+.|++.+.. +.|+
T Consensus 36 i~~V~iVG~V~~~~~~-------------~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v-~~f~ 101 (136)
T 4gop_B 36 LGQLTFVAVVRNISRN-------------ATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTL-KSFQ 101 (136)
T ss_dssp CCEEEEEEEEEEEEEC-------------SSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEE-EEET
T ss_pred EEEEEEEEEEEEEEec-------------CCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEE-EEeC
Confidence 3558999999998753 23677889999999999999742 4568999999999885 7899
Q ss_pred CeEEEEeCCceeEEEcCC
Q 031443 118 GSMRIAVDKWGRIEATEP 135 (159)
Q Consensus 118 G~~~L~vgk~g~I~~~~~ 135 (159)
|.+.|.+-. |.++.|
T Consensus 102 g~~qi~~~~---ir~v~d 116 (136)
T 4gop_B 102 NRRSISSGH---MRPVID 116 (136)
T ss_dssp TEEEEEESE---EEECSS
T ss_pred CEEEEEEEE---EEECCC
Confidence 999998876 777754
No 14
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=97.74 E-value=0.00023 Score=52.54 Aligned_cols=74 Identities=15% Similarity=0.085 Sum_probs=58.9
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCce-eEEEEEecCC------cCCCCCCCEEEEeceEEceeCC
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTG-TILFTARNDQ------VDLMKPGTTVILRNAKIDMFKG 118 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG-~I~ltlWde~------~~~i~~Gdvv~I~na~v~~~~G 118 (159)
+.+.+.|.|.++.+. ..-....|.|.|| .|....|.+. ...+++|+.|++.+.. +.|+|
T Consensus 32 ~~V~iVG~V~~~~~~-------------~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l-~~f~g 97 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKA-------------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHL-RSFQN 97 (132)
T ss_dssp CEEEEEEEEEEEEEC-------------SSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEE-EEETT
T ss_pred EEEEEEEEEEEEEEc-------------CCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEE-EeECC
Confidence 558999999998752 3467889999999 9999999742 3568999999999884 67999
Q ss_pred eEEEEeCCceeEEEcCCC
Q 031443 119 SMRIAVDKWGRIEATEPA 136 (159)
Q Consensus 119 ~~~L~vgk~g~I~~~~~~ 136 (159)
...|.+-. |.+++|+
T Consensus 98 ~~qi~~~~---ir~v~d~ 112 (132)
T 3kdf_D 98 KKSLVAFK---IMPLEDM 112 (132)
T ss_dssp EEEEEEEE---EEECSST
T ss_pred EEEEEEEE---EEEcCCc
Confidence 99998865 7777654
No 15
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.69 E-value=0.00027 Score=58.64 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeC--ceeEEEEEecC---CcCCC-CCCCE
Q 031443 32 KPVFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDD--TGTILFTARND---QVDLM-KPGTT 105 (159)
Q Consensus 32 ~~~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDe--TG~I~ltlWde---~~~~i-~~Gdv 105 (159)
+-.+++|++|+.+ ..+|+.+.|+++..+... | | +..+....|.|+ .| +++.+|.+ ....+ ++||+
T Consensus 3 ~y~y~~l~~l~~~-~~vnvigVV~~~~~p~~s-~--G----~d~~~tl~I~D~S~~g-l~v~iF~~~~~~LP~v~~~GDI 73 (294)
T 1xjv_A 3 NYIYTPLNQLKGG-TIVNVYGVVKFFKPPYLS-K--G----TDYCSVVTIVDQTNVK-LTCLLFSGNYEALPIIYKNGDI 73 (294)
T ss_dssp CCCCCCGGGCCSS-EEEEEEEEEEEEEEEEEC-S--S----SSEEEEEEEECTTCCE-EEEEEEESSGGGSCCCCSTTCE
T ss_pred cceEEEHHHhhCC-CeeEEEEEEEEcCCCccC-C--C----CeEEEEEEEEcCCCCC-EEEEEECCChHHCCCCCCCCCE
Confidence 3468899999764 448999999999877432 2 3 368899999995 55 88888864 45556 99999
Q ss_pred EEEeceEEceeCCeEEEEeCC
Q 031443 106 VILRNAKIDMFKGSMRIAVDK 126 (159)
Q Consensus 106 v~I~na~v~~~~G~~~L~vgk 126 (159)
|+|++..++.|+|.+.+..+.
T Consensus 74 I~l~~vki~~~~g~~~~v~~~ 94 (294)
T 1xjv_A 74 VRFHRLKIQVYKKETQGITSS 94 (294)
T ss_dssp EEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEEEECCeEEEEccC
Confidence 999999999999999886543
No 16
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=97.40 E-value=0.00097 Score=54.85 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=57.0
Q ss_pred CceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCce-eEEEEEecCC------cCCCCCCCEEEEeceEEceeCCe
Q 031443 47 GHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTG-TILFTARNDQ------VDLMKPGTTVILRNAKIDMFKGS 119 (159)
Q Consensus 47 ~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG-~I~ltlWde~------~~~i~~Gdvv~I~na~v~~~~G~ 119 (159)
.|.+.++|.++..- .......|.|.|| +|...+|++. ...+++|+.|+|.+ .++.|+|.
T Consensus 73 ~V~ivG~V~~i~~~-------------~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G-~v~~f~g~ 138 (270)
T 2pi2_A 73 QVTIVGIIRHAEKA-------------PTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAG-HLRSFQNK 138 (270)
T ss_dssp EEEEEEEEEEEEEC-------------SSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEE-EEEEETTE
T ss_pred EEEEEEEEEEEEec-------------cceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEE-EEEecCCe
Confidence 47788888887542 3467889999999 8999999642 35589999999996 55689999
Q ss_pred EEEEeCCceeEEEcCCC
Q 031443 120 MRIAVDKWGRIEATEPA 136 (159)
Q Consensus 120 ~~L~vgk~g~I~~~~~~ 136 (159)
+.|.+-+ |.++.++
T Consensus 139 ~qi~i~~---ir~v~d~ 152 (270)
T 2pi2_A 139 KSLVAFK---IMPLEDM 152 (270)
T ss_dssp EEEEEEE---EEECSCT
T ss_pred eEEEEEE---EEecCCH
Confidence 9998876 7777543
No 17
>1qzg_A Protection of telomeres protein 1; protrein-DNA complex, single-stranded telomeric DNA, DNA binding protein/DNA complex; HET: TMP; 1.90A {Schizosaccharomyces pombe} SCOP: b.40.4.3 PDB: 1qzh_A
Probab=97.29 E-value=0.0013 Score=52.15 Aligned_cols=92 Identities=10% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCCceeecccCC---CCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCc---e--eEEEEEec---CCcCC
Q 031443 31 RKPVFTKVDQLK---PGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDT---G--TILFTARN---DQVDL 99 (159)
Q Consensus 31 ~~~~~~kI~dL~---P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeT---G--~I~ltlWd---e~~~~ 99 (159)
....|+.+.++. ....-||+.+.|++...+....| |++ .-++...|.|++ . .+.+.++. +....
T Consensus 25 ~~~~~~~~r~~l~~~~~g~~VNviGVVvd~~~P~~S~r--Gtk---D~~~TltI~D~S~~~~~~gL~v~iF~~~~e~LP~ 99 (187)
T 1qzg_A 25 GELTFQSIRSSQELQKKNTIVNLFGIVKDFTPSRQSLH--GTK---DWVTTVYLWDPTCDTSSIGLQIHLFSKQGNDLPV 99 (187)
T ss_dssp TTEEEECHHHHTSCCSSCEEEEEEEEEEEEEEEEECSS--TTC---CEEEEEEEECTTSCTTSCCEEEEEEESSSSCSCC
T ss_pred cceeEEEHHHHHhhccCCCEEEEEEEEEEccCceecCC--CCc---cEEEEEEEEeCCCCCCCCceEEEEECCChhhCCC
Confidence 344566665533 22334899999999998754323 331 678999999987 1 36666664 34555
Q ss_pred C-CCCCEEEEeceEEceeCCeEEEEeCCc
Q 031443 100 M-KPGTTVILRNAKIDMFKGSMRIAVDKW 127 (159)
Q Consensus 100 i-~~Gdvv~I~na~v~~~~G~~~L~vgk~ 127 (159)
+ .+||+|+|++..++.|+|.+.+...+.
T Consensus 100 V~~~GDIIlL~rvkiq~~~g~~~~v~~~~ 128 (187)
T 1qzg_A 100 IKQVGQPLLLHQITLRSYRDRTQGLSKDQ 128 (187)
T ss_dssp CCSTTCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEECCeEEEEEcCc
Confidence 6 889999999999999999999865553
No 18
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=97.16 E-value=0.00049 Score=52.42 Aligned_cols=91 Identities=13% Similarity=0.212 Sum_probs=60.6
Q ss_pred CceeecccCCCCCCCceEEEEEEecCcc---cccccCCCCCCCcceEEEEEE-eeCc------e--eEEEEEecCCc---
Q 031443 33 PVFTKVDQLKPGTNGHNLTVNVLKSEPV---LPKNRAASPQLRQTRIAECLV-GDDT------G--TILFTARNDQV--- 97 (159)
Q Consensus 33 ~~~~kI~dL~P~~~~vnv~~kVL~i~~~---~~~~R~DG~~~~~~~V~~~lV-gDeT------G--~I~ltlWde~~--- 97 (159)
.+|.=|+|+.|+.- ++++|.|+.+..- -.-.-.|++. +.......+ +|++ | ++.++||++++
T Consensus 3 ~kf~llkdv~~~~F-~Dl~~qVv~~~~~~~~~~LyVTDYT~--N~~~~~~~~~~~~~~W~Gp~G~~tlqVtlwd~ha~~a 79 (143)
T 4hik_A 3 DSFSLLSQITPHQR-CSFYAQVIKTWYSDKNFTLYVTDYTE--NELFFPMSPYTSSSRWRGPFGRFSIRCILWDEHDFYC 79 (143)
T ss_dssp -CCCCGGGCCSSCE-EEEEEEEEEEEECSSCEEEEEECSCC--CTTSCCBCTTCTTCSCCCCCBSCCEEEEECHHHHHHH
T ss_pred chhhhHHhCCCCCe-EEEEEEEEEEEcCCCeEEEEEecCCC--CCcccccccCCCCccccCCCCcEEEEEEEECcHHHHH
Confidence 35667899999665 8999999997631 1223345554 122222111 1211 3 88999999755
Q ss_pred -CCCCCCCEEEEeceEEceeC-CeEEEEeCC
Q 031443 98 -DLMKPGTTVILRNAKIDMFK-GSMRIAVDK 126 (159)
Q Consensus 98 -~~i~~Gdvv~I~na~v~~~~-G~~~L~vgk 126 (159)
+.+++||.|+|+|..+++.+ |.++-.+..
T Consensus 80 r~~lk~Gd~v~L~Nv~iK~~~~g~LEG~l~~ 110 (143)
T 4hik_A 80 RNYIKEGDYVVMKNVRTKIDHLGYLECILHG 110 (143)
T ss_dssp TTTCCTTCEEEEEEEEEEECTTSCEEEEECC
T ss_pred HhhCCCCCEEEEEeEEEeecCCceEEEEEcC
Confidence 45899999999999999874 678777744
No 19
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=97.07 E-value=0.00027 Score=58.65 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=64.5
Q ss_pred ceeecccCCCCCCCceEEEEEEecCcc----cccccCCCCCCCcceEEE-----EEEee-------CceeEEEEEecCCc
Q 031443 34 VFTKVDQLKPGTNGHNLTVNVLKSEPV----LPKNRAASPQLRQTRIAE-----CLVGD-------DTGTILFTARNDQV 97 (159)
Q Consensus 34 ~~~kI~dL~P~~~~vnv~~kVL~i~~~----~~~~R~DG~~~~~~~V~~-----~lVgD-------eTG~I~ltlWde~~ 97 (159)
.+..|+||+++. -++|.|+||.+... -...-.||+......... ..-|| ...++.+++|++++
T Consensus 144 ~~~~L~di~~~~-f~DLv~qVv~v~~~~~~~~~LyVwDgT~~~~~~~~~~~~~~~~~gd~~~~~~~~~lt~~V~~~d~h~ 222 (294)
T 1xjv_A 144 TLLKLCDVQPMQ-YFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHV 222 (294)
T ss_dssp CCCCGGGCCSSC-EEEEEEEEEEEEECSSSEEEEEEECSSCCSSCBCCCCCCSSCCEECHHHHHHHGGGSEEEEEETTHH
T ss_pred ceeEHHHcccCC-eeeEEEEEEEEEecCCCeEEEEEECCCCCCCCccccccccccccCcccccccccCeeEEEEEEcchh
Confidence 578999999984 59999999987532 123445777622211110 12234 24578999999765
Q ss_pred ---CCCCCCCEEEEeceEEcee--------CCeEEEEeCC
Q 031443 98 ---DLMKPGTTVILRNAKIDMF--------KGSMRIAVDK 126 (159)
Q Consensus 98 ---~~i~~Gdvv~I~na~v~~~--------~G~~~L~vgk 126 (159)
..+++||.|+|.|..++.. .+.|+..+..
T Consensus 223 ~~~~~lk~Gd~V~l~Nv~~k~~~~~~~~~~~~~le~~lh~ 262 (294)
T 1xjv_A 223 HVARSLKVGSFLRIYSLHTKLQSMNSENQTMLSLEFHLHG 262 (294)
T ss_dssp HHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred HHHhcCCCCcEEEEeeeEEEecccccccCCCcceEEEEec
Confidence 4589999999999999988 5678877765
No 20
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=97.06 E-value=0.0027 Score=56.74 Aligned_cols=90 Identities=9% Similarity=0.176 Sum_probs=65.8
Q ss_pred cCCCceeecccCC-CCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCcee--------E-----EEEEec-
Q 031443 30 KRKPVFTKVDQLK-PGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGT--------I-----LFTARN- 94 (159)
Q Consensus 30 l~~~~~~kI~dL~-P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~--------I-----~ltlWd- 94 (159)
-....|++|+++. .....+||.|.|++...+.. .-| ..-+....|.|++=. + .+.+..
T Consensus 33 ~~~y~y~~L~~a~~~~~~~VnviGVVvd~~~P~~---T~G----~D~~~t~tI~D~S~~~~~~~~~Gl~~~~~~v~iF~~ 105 (495)
T 1jb7_A 33 GHKYEYVELAKASLTSAQPQHFYAVVIDATFPYK---TNQ----ERYICSLKIVDPTLYLKQQKGAGDASDYATLVLYAK 105 (495)
T ss_dssp ---CCBCCTTTSCSSCCSCEEEEEEEEEECCCEE---CSS----SCEEEEEEEEBTTBSBCCTTSSCSCBCCEEEEEEES
T ss_pred cCCCccEEHHHHHhccCCeEEEEEEEeecCCcee---cCC----CeEEEEEEEEeCCCCcccccccccccCceEEEEECC
Confidence 4445899999885 23445899999999998753 224 357899999995322 3 666664
Q ss_pred --CCcCCC-CCCCEEEEeceEEceeCCeEEEEeCC
Q 031443 95 --DQVDLM-KPGTTVILRNAKIDMFKGSMRIAVDK 126 (159)
Q Consensus 95 --e~~~~i-~~Gdvv~I~na~v~~~~G~~~L~vgk 126 (159)
+.+..+ .+||+|+|++..++.|+|.+.+..+.
T Consensus 106 ~~e~LP~V~~~GDII~LhrvkIq~~ng~~~~v~~~ 140 (495)
T 1jb7_A 106 RFEDLPIIHRAGDIIRVHRATLRLYNGQRQFNANV 140 (495)
T ss_dssp SGGGSCCCCEETCEEEEEEEEEEEETTEEEEEEET
T ss_pred ChHHCCCCCCCCCEEEEEEEEEEEECCcEEEEecC
Confidence 355557 68999999999999999999976654
No 21
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.23 E-value=0.0082 Score=46.18 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCce-eEEEEEecCC-c------CCCCCCCEEEEeceEEceeC
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTG-TILFTARNDQ-V------DLMKPGTTVILRNAKIDMFK 117 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG-~I~ltlWde~-~------~~i~~Gdvv~I~na~v~~~~ 117 (159)
+.|.|.|.|+++.+.. .-....|-|.|| +|...+|-+. . ..+.+|+.|++.|.. +.|+
T Consensus 48 ~~V~IvGiVv~~~~~~-------------~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v-~~fr 113 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-------------GKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKI-NSFR 113 (159)
T ss_dssp CEEEEEEEEEEEEEET-------------TEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEE-ECSS
T ss_pred EEEEEEEEEEEEEEeC-------------CEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEE-EeeC
Confidence 4578999999987531 235678899999 5999999643 1 237999999999876 6789
Q ss_pred CeEEEEeCCceeEEEcCC
Q 031443 118 GSMRIAVDKWGRIEATEP 135 (159)
Q Consensus 118 G~~~L~vgk~g~I~~~~~ 135 (159)
|..+|.+.+ |.++++
T Consensus 114 ~~rqI~~~~---i~~v~d 128 (159)
T 3kf6_A 114 SEVELIAQS---FEELRD 128 (159)
T ss_dssp SSCEEEEEE---EEEECS
T ss_pred CEEEEEEEE---EEECCC
Confidence 999998877 555543
No 22
>1jb7_A Telomere-binding protein alpha subunit; DNA-protein interactions, DNA HYDR sodium ION, quadruplex DNA, DNA-binding protein-DNA complex; 1.86A {Sterkiella nova} SCOP: b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1kix_A 1otc_A* 2i0q_A 1ph6_A 1ph1_A 1phj_A* 1ph3_A 1pa6_A 1ph4_A 1ph7_A 1ph8_A 1ph9_A 1ph5_A* 1ph2_A* 1k8g_A
Probab=92.53 E-value=0.59 Score=41.65 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=65.6
Q ss_pred CCceeecc-cCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEec-CCcCCCCCCCEEEEe
Q 031443 32 KPVFTKVD-QLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARN-DQVDLMKPGTTVILR 109 (159)
Q Consensus 32 ~~~~~kI~-dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWd-e~~~~i~~Gdvv~I~ 109 (159)
...|..|+ ||+++.- ++|+|+||.+.... ..-....|-|.||.-.++++- .....+.+|++++|.
T Consensus 208 ~~~f~~L~~di~~~~f-~DLv~qVv~~~~~d------------~~~~~L~VwDgT~~~~~~~~~~~~fP~~~~G~Vlri~ 274 (495)
T 1jb7_A 208 SDMYTALNKAQAQKGD-FDVVAKILQVHELD------------EYTNELKLKDASGQVFYTLSLKLKFPHVRTGEVVRIR 274 (495)
T ss_dssp GGGSCCGGGGGGCSSC-EEEEEEEEEEEECS------------SSEEEEEEEETTCCEEEEEEETTTCTTCCTTCEEEEE
T ss_pred ccchhhhhhhhccCCc-eeEEEEEeEEeccC------------CCeEEEEEEeCCCCCcceeeccccCCceeeEEEEEEe
Confidence 34567899 9999764 89999999997641 124678899999999998775 345667889999999
Q ss_pred ceEEceeCC-eEEEEeCCceeEE
Q 031443 110 NAKIDMFKG-SMRIAVDKWGRIE 131 (159)
Q Consensus 110 na~v~~~~G-~~~L~vgk~g~I~ 131 (159)
+....+.-+ ...+..+.|-.|.
T Consensus 275 ~~~~de~~~~l~~~~~~~w~ni~ 297 (495)
T 1jb7_A 275 SATYDETSTQKKVLILSHYSNII 297 (495)
T ss_dssp EEEECTTCCSSCEEEEEEEEEEE
T ss_pred cCccchhhhhhhhhcccccccee
Confidence 998875332 4567777776665
No 23
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=90.94 E-value=1.6 Score=38.33 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=63.5
Q ss_pred ccccccccCCCceeecccCCCC-CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC-----
Q 031443 23 TNAKVVEKRKPVFTKVDQLKPG-TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ----- 96 (159)
Q Consensus 23 ~~~~~~~l~~~~~~kI~dL~P~-~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~----- 96 (159)
|.+...+|..+..++|++|... ...|.|.+.|-++-. -| +.++=+.|-|.+|.|.+.+=.+.
T Consensus 7 ~~~~~~~~~~~~~~~i~~~~~~~g~~V~v~Gwv~~~R~-------~G-----k~~~Fi~LrD~sg~iQvv~~~~~~~~~~ 74 (456)
T 3m4p_A 7 TEATTTPVETPIVCNIRDAAGLEGKLVTFKGWAYHIRK-------AR-----KTLIFVELRDGSGYCQCVIFGKELCEPE 74 (456)
T ss_dssp ---------CCCCEECCSTTCCCSSEEEEEEEEEEEEC-------CS-----SSEEEEEEECSSCEEEEEEESTTTTCHH
T ss_pred chhcccCCCcceEEEhhhhhhcCCCEEEEEEEEEEEec-------CC-----CceEEEEEEeCCccEEEEEecccchhhH
Confidence 4455667778888999999543 234778888877532 12 24778889999999988775422
Q ss_pred -cCCCCCCCEEEEeceEEceeC----------CeEEEEeCCceeEEEc
Q 031443 97 -VDLMKPGTTVILRNAKIDMFK----------GSMRIAVDKWGRIEAT 133 (159)
Q Consensus 97 -~~~i~~Gdvv~I~na~v~~~~----------G~~~L~vgk~g~I~~~ 133 (159)
+..+..|++|.|.+-.++.-. |.++|.+.+.--+.+.
T Consensus 75 ~~~~l~~g~~V~V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a 122 (456)
T 3m4p_A 75 KVKLLTRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGES 122 (456)
T ss_dssp HHTTCCTTCEEEEEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECC
T ss_pred HhhcCCCccEEEEEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecC
Confidence 235899999999998875433 7788888775444443
No 24
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=88.87 E-value=2.5 Score=32.69 Aligned_cols=99 Identities=19% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHhhHHHHhhcCCCCccccccc------------ccCCCceeecccCCCCC-CCceEEEEEEecCcccccccCCCCCCCc
Q 031443 7 KQQQKAQKQQQGSSSDTNAKVV------------EKRKPVFTKVDQLKPGT-NGHNLTVNVLKSEPVLPKNRAASPQLRQ 73 (159)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~kI~dL~P~~-~~vnv~~kVL~i~~~~~~~R~DG~~~~~ 73 (159)
|=+-|+.+-++|-+|=..++.. +..+-...++.+|.||. +++-+.+||+-.-...+
T Consensus 23 KGklK~KRL~~~~ssL~~~~lgp~~~g~~~~~~g~~~~l~~~~l~~L~~G~N~g~vv~gKVv~~i~~e~----------- 91 (166)
T 2xvs_A 23 KGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVILGKVVFSLTTEE----------- 91 (166)
T ss_dssp GGGCCHHHHHHHHHTCCGGGGGGGTTSCEECTTSCEECCEECCGGGCCSEECTTEEEEEEEEEEECCTT-----------
T ss_pred cCCccHHHHHHHHHhcchhhcCcccCcccccccCCcceeeeeeHHHcccccCCCcEEEEEEEEEecCCC-----------
Confidence 4455666666776666655542 22334578899999985 66789999987543210
Q ss_pred ceEEEEEEeeCcee-EEEEEecC-CcCCCCCCCEEEEeceEEcee
Q 031443 74 TRIAECLVGDDTGT-ILFTARND-QVDLMKPGTTVILRNAKIDMF 116 (159)
Q Consensus 74 ~~V~~~lVgDeTG~-I~ltlWde-~~~~i~~Gdvv~I~na~v~~~ 116 (159)
..=...++.|..|+ +-+++.+- +...+..||+|.|-..+++..
T Consensus 92 ~vP~~f~~vD~~g~c~avsVYNl~~~~G~~iGDsV~IpeP~v~~v 136 (166)
T 2xvs_A 92 KVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRLH 136 (166)
T ss_dssp CCSEEEEEESSSSCCEEEEECCCCSSCCCCTTCEEEEESCEEEEE
T ss_pred CCceEEEEECCCCCEEEEEEEeccCCcceEecCEEEeCCCcEEEE
Confidence 11245677777665 56777873 433489999999999998754
No 25
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=87.47 E-value=2.2 Score=37.26 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=60.4
Q ss_pred ecccCCCC--CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC--------cCCCCCCCEE
Q 031443 37 KVDQLKPG--TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ--------VDLMKPGTTV 106 (159)
Q Consensus 37 kI~dL~P~--~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~--------~~~i~~Gdvv 106 (159)
.+++|.+. .+.|.|.+.|-++-. .+.++=+.|-|.+|.|.+.+=.+. +..+..||+|
T Consensus 6 ~~~~l~~~~~g~~V~v~Gwv~~~R~-------------~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V 72 (438)
T 3nem_A 6 YSSEITEELNGQKVKVAGWVWEVKD-------------LGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVV 72 (438)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEEEE-------------ETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEE
T ss_pred EHHHcchhcCCCEEEEEEEEEEEec-------------CCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEE
Confidence 35566543 345788888877532 145888899999999988876443 3458999999
Q ss_pred EEeceEEceeC--CeEEEEeCCceeEEEc
Q 031443 107 ILRNAKIDMFK--GSMRIAVDKWGRIEAT 133 (159)
Q Consensus 107 ~I~na~v~~~~--G~~~L~vgk~g~I~~~ 133 (159)
.|.+-..+--+ |.++|.+.+.--+.+.
T Consensus 73 ~V~G~v~~~~~~~~~~el~~~~i~vl~~~ 101 (438)
T 3nem_A 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRA 101 (438)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECB
T ss_pred EEEEEEEeCCCCCCcEEEEEEEEEEEecC
Confidence 99988776544 7899998876555544
No 26
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=87.18 E-value=2.1 Score=29.82 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=46.1
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe-----eCcee-------EEEEEecCCc----CCCCCCCEEEE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG-----DDTGT-------ILFTARNDQV----DLMKPGTTVIL 108 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg-----DeTG~-------I~ltlWde~~----~~i~~Gdvv~I 108 (159)
++.+.|.+++..-.+.+.++ .| ..|++..|| ++++- +++++|+..+ ..+..|+.|.|
T Consensus 2 ~N~v~L~G~l~~dpelR~t~--~G-----~~v~~f~lA~~~~~~~~~~~r~~~~~~~vv~~g~~Ae~~~~~l~KG~~V~V 74 (104)
T 1txy_A 2 TNRLVLSGTVCRAPLRKVSP--SG-----IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITV 74 (104)
T ss_dssp CEEEEEEEEEEEEEEEEECT--TS-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSTTHHHHTTCCTTCEEEE
T ss_pred cEEEEEEEEECCCceEEECC--CC-----CEEEEEEEEEeCccccCCceeceeEEEEEEEEhHHHHHHHhhCCCCCEEEE
Confidence 34578888888877765433 34 457777775 45677 9999998765 44799999999
Q ss_pred eceEEce
Q 031443 109 RNAKIDM 115 (159)
Q Consensus 109 ~na~v~~ 115 (159)
.+-....
T Consensus 75 ~G~L~~~ 81 (104)
T 1txy_A 75 QGFISCH 81 (104)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9877643
No 27
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=87.11 E-value=4.4 Score=32.21 Aligned_cols=76 Identities=12% Similarity=0.128 Sum_probs=61.5
Q ss_pred EEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC-CcCCCCCCCEEEEeceEEceeCCeEEEEeCCce
Q 031443 50 LTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND-QVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWG 128 (159)
Q Consensus 50 v~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde-~~~~i~~Gdvv~I~na~v~~~~G~~~L~vgk~g 128 (159)
+.+.||...+|-++.... ..+|..+.||-||--.++-..+- +-+.+.+..+|.|.|-+ .++|.+++ .+.+
T Consensus 12 ~~VmVLkaTepF~Ye~~E-----~k~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISdY~--~~~gfLEi--~~~S 82 (204)
T 3rlo_A 12 KEVMVLNATESFVYEPKE-----QKKMFHATVATENEVFRVKVFNIDLKEKFTPKKIIAIANYV--CRNGFLEV--YPFT 82 (204)
T ss_dssp EEEEEEEECCCEEEETTT-----TEEEEEEEEECSSCEEEEEECCGGGTTTTCTTCEEEEESCE--EETTEEEE--CTTS
T ss_pred eEEEEEeccCCceecccc-----cceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEecc--cccceEEE--eccc
Confidence 789999999887665433 26899999999999999999995 44668999999999988 45887775 4667
Q ss_pred eEEEcC
Q 031443 129 RIEATE 134 (159)
Q Consensus 129 ~I~~~~ 134 (159)
.|..++
T Consensus 83 sVse~~ 88 (204)
T 3rlo_A 83 LVADVN 88 (204)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 887775
No 28
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=86.15 E-value=2.1 Score=41.49 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=64.1
Q ss_pred CceeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC------cCCCCCCCEE
Q 031443 33 PVFTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ------VDLMKPGTTV 106 (159)
Q Consensus 33 ~~~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~------~~~i~~Gdvv 106 (159)
...++|.+|.....+|.+.+.|.++... +. | .| ..+...-|-|-|++|.+-.|-.. .+.+++|+.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~-~~-~-~~-----~~~~~~~~td~~~~~~~k~f~~~~~~~~~~~~~~~g~~~ 76 (1041)
T 3f2b_A 5 EPVRRLETIVEEERRVVVQGYVFDAEVS-EL-K-SG-----RTLLTMKITDYTNSILVKMFSRDKEDAELMSGVKKGMWV 76 (1041)
T ss_dssp --CBCGGGCCSCEEEEEEEEEEEEEEEE-EC-T-TS-----CEEEEEEEECSSCEEEEEEECSSHHHHHHHHTCCTTCEE
T ss_pred cCcccHHHhhcccceEEEEEEEEEEEEE-Ec-c-CC-----CEEEEEEEEeCCCCEEEEEeecccchHHHHhcCCCCCEE
Confidence 3568899999999999999999997642 22 2 23 46889999999999999888421 2468999999
Q ss_pred EEeceEE-ceeCCeEEEEeCC
Q 031443 107 ILRNAKI-DMFKGSMRIAVDK 126 (159)
Q Consensus 107 ~I~na~v-~~~~G~~~L~vgk 126 (159)
++++-.. ..|.+.+.+.+..
T Consensus 77 ~~~g~~~~d~~~~~~~~~~~~ 97 (1041)
T 3f2b_A 77 KVRGSVQNDTFVRDLVIIAND 97 (1041)
T ss_dssp EEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEeccCCcceEEEeee
Confidence 9987643 4466766666654
No 29
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=85.95 E-value=5.3 Score=34.59 Aligned_cols=88 Identities=17% Similarity=0.207 Sum_probs=59.7
Q ss_pred cccCC-CCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCCCC-CCCEEEEeceEEce
Q 031443 38 VDQLK-PGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDLMK-PGTTVILRNAKIDM 115 (159)
Q Consensus 38 I~dL~-P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~i~-~Gdvv~I~na~v~~ 115 (159)
|++|. .....|.|.+.|.++-. .+.++=+.+-|.+|.|.+++-. ..+. .||+|.|.+-....
T Consensus 5 ~~~l~~~~~~~V~v~Gwv~~~R~-------------~g~~~F~~lrD~~g~iQ~v~~~---~~l~~~~~~v~v~G~v~~~ 68 (422)
T 1n9w_A 5 VRDLKAHVGQEVELLGFLHWRRD-------------LGRIQFLLLRDRSGVVQVVTGG---LKLPLPESALRVRGLVVEN 68 (422)
T ss_dssp GGGGGGCTTSEEEEEEEEEEEEE-------------CSSEEEEEEEETTEEEEEEEES---CCCCCTTCEEEEEEEEEEC
T ss_pred HHHHHhcCCCEEEEEEEEEEEec-------------CCCeEEEEEEECCEEEEEEEEc---cccCCCCCEEEEEEEEEec
Confidence 45553 12344788888887533 1457888999999999988754 5688 99999999988766
Q ss_pred eC--CeEEEEeCCceeEEEc-CCCcEEEc
Q 031443 116 FK--GSMRIAVDKWGRIEAT-EPAKFVVK 141 (159)
Q Consensus 116 ~~--G~~~L~vgk~g~I~~~-~~~~~~vn 141 (159)
-. |.++|.+.+.--+.+. .+.++..+
T Consensus 69 ~~~~~~~el~~~~~~vl~~~~~~~P~~~~ 97 (422)
T 1n9w_A 69 AKAPGGLEVQAKEVEVLSPALEPTPVEIP 97 (422)
T ss_dssp TTSTTSEEEEEEEEEEEECCCSCCC----
T ss_pred CCCCccEEEEEeEEEEeccCCcCCCCCcc
Confidence 54 4899999886555554 23444443
No 30
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=84.19 E-value=4.1 Score=32.47 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=62.2
Q ss_pred eEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC-CcCCCCCCCEEEEeceEEceeCCeEEEEeCCc
Q 031443 49 NLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND-QVDLMKPGTTVILRNAKIDMFKGSMRIAVDKW 127 (159)
Q Consensus 49 nv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde-~~~~i~~Gdvv~I~na~v~~~~G~~~L~vgk~ 127 (159)
-+.+.||...+|-++....| ..+|..+.||-||--.++-..+- +-+.+.+..+|.|.|-+- ++|.+++ .+.
T Consensus 14 P~~VmVLkaTepF~Ye~~E~----~~~MFHATVATetqfF~VKVfn~~LKeKF~pk~iI~ISdY~~--~~gfLEi--~~~ 85 (208)
T 3rn5_A 14 CLPVMVLKAKKPFTFETQEG----KQEMFHATVATEKEFFFVKVFNTLLKDKFIPKRIIIIARYYR--HSGFLEV--NSA 85 (208)
T ss_dssp CEEEEEEEECCCEEEEETTE----EEEEEEEEEECSSCEEEEEECCGGGGGTCCTTCEEEEESBEE--CSSCEEE--CTT
T ss_pred CeEEEEEeccCCeeeecccc----cceEEEEEEeeccceEEEEEecchhhhhcCCCcEEEEEeccc--ccceEEE--ecc
Confidence 37899999998876654432 35799999999999999999995 446689999999999884 4887775 466
Q ss_pred eeEEEcC
Q 031443 128 GRIEATE 134 (159)
Q Consensus 128 g~I~~~~ 134 (159)
+.|..++
T Consensus 86 SsVse~~ 92 (208)
T 3rn5_A 86 SRVLDAE 92 (208)
T ss_dssp SEEEECC
T ss_pred cEEEEcc
Confidence 7887775
No 31
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=83.42 E-value=7.7 Score=30.92 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=59.4
Q ss_pred eecccCCCCCCCc--eEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCC-CCCCCEEEEeceE
Q 031443 36 TKVDQLKPGTNGH--NLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDL-MKPGTTVILRNAK 112 (159)
Q Consensus 36 ~kI~dL~P~~~~v--nv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~-i~~Gdvv~I~na~ 112 (159)
-||.+|.....|. +=.+.|..+..- ....---|-|.||.+-+...+..... .++||-++|.==-
T Consensus 111 PKI~~L~~q~~Gt~V~G~F~v~KK~v~-------------~~~~~YeI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFe 177 (208)
T 3rn5_A 111 PKINTLQTQPLGTIVNGLFVVQKVTEK-------------KKNILFDLSDNTGKMEVLGVRNEDTMKCKEGDKVRLTFFT 177 (208)
T ss_dssp CCHHHHHTSCSSCEEEEEEEEEEEEEC-------------SSEEEEEEEETTEEEEEEEECSTGGGSCCTTCEEEEEEEE
T ss_pred cchhhhhcCCCCCEEeEEEEEEEEEec-------------cceEEEEEecCCCcEEEEEeccCcccccCCCCeeEEEEEE
Confidence 4577777766663 333333333321 12344567899999999877765444 5999999998777
Q ss_pred EceeCCeEEEEeCCceeEEEc
Q 031443 113 IDMFKGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 113 v~~~~G~~~L~vgk~g~I~~~ 133 (159)
.+...+.+.|..+..+-|...
T Consensus 178 L~~~~~~~qL~s~~HSfikVi 198 (208)
T 3rn5_A 178 LSKNGEKLQLTSGVHSTIKVI 198 (208)
T ss_dssp EEECSSSEEEECCTTCEEEEE
T ss_pred EeccCCeeeEEEecceeEEEE
Confidence 777788999999998877655
No 32
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=83.42 E-value=3.1 Score=36.25 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred eecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC------cCCCCCCCEEEEe
Q 031443 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ------VDLMKPGTTVILR 109 (159)
Q Consensus 36 ~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~------~~~i~~Gdvv~I~ 109 (159)
.+|.++.|... +-+.+.|.+.....+ | |.| -..+.|++|+|++.+|.+- +..+.+||.|.+.
T Consensus 276 ~~i~~~~~~~~-~~v~G~V~~~P~~~~-----G-----GHV-~f~l~d~~~~i~c~ayeptk~fr~~vr~L~~GD~V~v~ 343 (402)
T 3au7_A 276 EEVHRLENYRS-YRLRGRVTLEPYDIE-----G-----GHV-FFEIDTKFGSVKCAAFEPTKQFRNVIRLLRKGDVVEVY 343 (402)
T ss_dssp GGCSSCCTTCE-EEEEEEEEEEEEEET-----T-----TEE-EEEEEETTEEEEEEECGGGTTHHHHHTTCCTTCEEEEE
T ss_pred ccccccccCce-EEEEEEEecCcEecc-----C-----ceE-EEEEEcCCCEEEEEEEccchHHHHHHhcCCCCCEEEEE
Confidence 45889998655 789999998744321 2 223 2456689999999999832 2457999999999
Q ss_pred ceEEceeCCeEEEEeCCce
Q 031443 110 NAKIDMFKGSMRIAVDKWG 128 (159)
Q Consensus 110 na~v~~~~G~~~L~vgk~g 128 (159)
++... | .|++-+.-
T Consensus 344 G~v~~---g--tLnvEk~~ 357 (402)
T 3au7_A 344 GSMKK---D--TINLEKIQ 357 (402)
T ss_dssp EEEET---T--EEEEEEEE
T ss_pred EeecC---C--EEEEEEEE
Confidence 99544 4 77776643
No 33
>2v31_A Ubiquitin-activating enzyme E1 X; ligase, phosphorylation, catalytic domain, heteronuclear first catalytic cysteine half-domain, E1 protein; NMR {Mus musculus}
Probab=82.84 E-value=2.9 Score=30.14 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=45.0
Q ss_pred eeCceeEEEEEecCCcCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCCCcEEEccCCCccc
Q 031443 82 GDDTGTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVVKEDNNLSL 148 (159)
Q Consensus 82 gDeTG~I~ltlWde~~~~i~~Gdvv~I~na~v~~~~G~~~L~vgk~g~I~~~~~~~~~vne~~N~S~ 148 (159)
-|+.|.|.+ -++..-.++.||.|.+... +|..+||=..-=.|+..+++.|++.++..+|.
T Consensus 26 ~~~~g~Vt~--~~~~~H~l~dGD~V~FseV-----~GM~eLN~~~p~~i~v~~p~tf~I~dts~f~~ 85 (112)
T 2v31_A 26 KDNPGVVTC--LDEARHGFETGDFVSFSEV-----QGMIQLNGCQPMEIKVLGPYTFSICDTSNFSD 85 (112)
T ss_dssp CSSSEEEEE--CTTCCCCCCTTCEEEECSE-----ESCCTTGGGCCEEEEECSSSEEEESCCTTSCC
T ss_pred cCCCcEEEE--ecCCccCCcCCCEEEEEee-----EcchhhCCCcceEEEEcCCCEEEEeccccccc
Confidence 477887655 5666667999999998765 46666655444578888999999988888875
No 34
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=80.23 E-value=2.3 Score=30.31 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=45.7
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe-------eCceeEEEEEecCCcC----CCCCCCEEEEeceE
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG-------DDTGTILFTARNDQVD----LMKPGTTVILRNAK 112 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg-------DeTG~I~ltlWde~~~----~i~~Gdvv~I~na~ 112 (159)
-|+.+.|.+++..-.+.+.+. +| ...|++..|| |+|--+++++|+..++ .+..|+-|.|.+-.
T Consensus 10 ~~~~v~LiGrL~~DPelR~t~--~g----~~~va~f~lAv~~~~~~~~t~fi~vv~wgk~AE~~~~yl~KG~~V~VeGrL 83 (108)
T 3koj_A 10 HMNSCILQATVVEAPQLRYAQ--DN----QTPVAEMVVQFPGLSSKDAPARLKVVGWGAVAQELQDRCRLNDEVVLEGRL 83 (108)
T ss_dssp SCEEEEEEEEEEEEEEEEECT--TS----SSEEEEEEEEECC-----CCEEEEEEEETHHHHHHHHHCCTTCEEEEEEEE
T ss_pred ccceEEEEEEECCCCEEEEeC--CC----CEEEEEEEEEECCcccCCCcEEEEEEEEhHHHHHHHHhCCCCCEEEEEEEE
Confidence 356678888888876665432 22 1467887776 3577899999996654 37999999999876
Q ss_pred E
Q 031443 113 I 113 (159)
Q Consensus 113 v 113 (159)
.
T Consensus 84 ~ 84 (108)
T 3koj_A 84 R 84 (108)
T ss_dssp E
T ss_pred E
Confidence 4
No 35
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=79.56 E-value=9.6 Score=32.99 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=56.8
Q ss_pred ecccCCCC-CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcC-----CCCCCCEEEEec
Q 031443 37 KVDQLKPG-TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVD-----LMKPGTTVILRN 110 (159)
Q Consensus 37 kI~dL~P~-~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~-----~i~~Gdvv~I~n 110 (159)
+|+|+... ...|.|.+.|.++-. -| +.++=+.|-|.+|.|.+.+=++..+ .+..||+|.+.+
T Consensus 2 ~i~~~~~~~~~~V~v~Gwv~~~R~-------~G-----k~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLVKHRNERVCIKGWIHRMRR-------QG-----KSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYG 69 (435)
T ss_dssp CGGGGGGGTTSEEEEEEEEEEEEE-------CT-----TSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEE
T ss_pred chhhhhhcCCCEEEEEEEEEEecc-------cC-----CCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEE
Confidence 57777542 234788888887532 22 2477788999999999887533211 378999999999
Q ss_pred eEEc-----eeCCeEEEEeCCceeEEE
Q 031443 111 AKID-----MFKGSMRIAVDKWGRIEA 132 (159)
Q Consensus 111 a~v~-----~~~G~~~L~vgk~g~I~~ 132 (159)
-..+ .-.|.++|.+.+.--+.+
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~ 96 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGN 96 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEEC
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeec
Confidence 8776 335778888877555443
No 36
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=79.33 E-value=7.8 Score=33.57 Aligned_cols=83 Identities=7% Similarity=0.022 Sum_probs=59.2
Q ss_pred cccCCCC--CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC-----CcCCCCCCCEEEEec
Q 031443 38 VDQLKPG--TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND-----QVDLMKPGTTVILRN 110 (159)
Q Consensus 38 I~dL~P~--~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde-----~~~~i~~Gdvv~I~n 110 (159)
+++|.+. ...|.|.+.|.++-. .+.++=+.+-|.+|.|.+.+-.+ .+..+..||+|.|.+
T Consensus 7 ~~~l~~~~~~~~V~v~Gwv~~~R~-------------~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~l~~~~~v~v~G 73 (429)
T 1wyd_A 7 IADVTPEYDGKEVIWAGWVHLLRD-------------LGGKKFIILRDKTGLGQVVVDKNSSAFGISQELTQESVIQVRG 73 (429)
T ss_dssp TTTCCGGGTTCEEEEEEEEEEEEE-------------ETTEEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEE
T ss_pred HHHhhHHhCCCEEEEEEEEEEEec-------------CCCeEEEEEEECCeeEEEEEeCChHHHHHHHhCCCCCEEEEEE
Confidence 5555432 344788888887533 14578889999999999988532 124589999999999
Q ss_pred eEEceeCC--eEEEEeCCceeEEEc
Q 031443 111 AKIDMFKG--SMRIAVDKWGRIEAT 133 (159)
Q Consensus 111 a~v~~~~G--~~~L~vgk~g~I~~~ 133 (159)
-..+.-.+ .++|.+.+.--+.+.
T Consensus 74 ~v~~~~~~~~~~el~~~~~~vl~~~ 98 (429)
T 1wyd_A 74 IVKADKRAPRGIELHAEEITLLSKA 98 (429)
T ss_dssp EEEECSSSGGGEEEEEEEEEEEECC
T ss_pred EEEecCCCCccEEEEEeEEEEeccC
Confidence 88766544 899999886555544
No 37
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=79.24 E-value=8.1 Score=34.28 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=57.3
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC---------CcCCCCCCCEEEEeceEEcee
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND---------QVDLMKPGTTVILRNAKIDMF 116 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde---------~~~~i~~Gdvv~I~na~v~~~ 116 (159)
..|.|.+.|..+-. .++++=+.|-|.+|.|-+.+-.+ .+..+..||+|.|.+-..+.-
T Consensus 65 ~~V~v~Gwv~~~R~-------------~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~ 131 (504)
T 1e1o_A 65 IEVSVAGRMMTRRI-------------MGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQ 131 (504)
T ss_dssp CEEEEEEEEEEEEE-------------ETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECT
T ss_pred CEEEEEEEEEEEec-------------CCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecC
Confidence 34788888887532 24577789999999999988543 224578999999999998887
Q ss_pred CCeEEEEeCCceeEEEc
Q 031443 117 KGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 117 ~G~~~L~vgk~g~I~~~ 133 (159)
.|.++|.+.+.--+.+.
T Consensus 132 ~ge~ei~~~~i~vl~~a 148 (504)
T 1e1o_A 132 TGELSIHCTELRLLTKA 148 (504)
T ss_dssp TCCEEEEEEEEEEEECC
T ss_pred CceEEEEEEEEEEeccc
Confidence 89999999886555543
No 38
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=79.11 E-value=8.9 Score=34.56 Aligned_cols=97 Identities=8% Similarity=0.094 Sum_probs=69.0
Q ss_pred CCceeecccCCCCC--CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEec-CC--------cCCC
Q 031443 32 KPVFTKVDQLKPGT--NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARN-DQ--------VDLM 100 (159)
Q Consensus 32 ~~~~~kI~dL~P~~--~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWd-e~--------~~~i 100 (159)
...+++|.+|.+.. ..|.|.+.|-.+-. .+.++=+.|-|.+|.|-+.+-. +. +..+
T Consensus 47 ~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~-------------~gkl~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~~l 113 (548)
T 3i7f_A 47 GLKYTEIEELVPAMAEKTVTIRARVQAVRG-------------KGNMVFLFLRKGIYTCQALVMKSETISKEFVQFCQKI 113 (548)
T ss_dssp CCCBCCGGGCSGGGTTCEEEEEEEEEEEEE-------------CSSEEEEEEEETTEEEEEEEECSSSSCHHHHHHHHTC
T ss_pred CCceEEhhhcchhcCCCEEEEEEEEEEEec-------------CCCeEEEEEEECCeeEEEEEECCCccCHHHHHHHhCC
Confidence 35788999998543 44778888877532 2468888899999999988754 21 2358
Q ss_pred CCCCEEEEeceEEcee-------CCeEEEEeCCceeEEEc-CCCcEEEc
Q 031443 101 KPGTTVILRNAKIDMF-------KGSMRIAVDKWGRIEAT-EPAKFVVK 141 (159)
Q Consensus 101 ~~Gdvv~I~na~v~~~-------~G~~~L~vgk~g~I~~~-~~~~~~vn 141 (159)
..|++|.|.+-..+.- .|.++|.+.+.--+.+. .+..+.++
T Consensus 114 ~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~ 162 (548)
T 3i7f_A 114 SAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIE 162 (548)
T ss_dssp CTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSG
T ss_pred CCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCch
Confidence 9999999998877643 47899999887666655 24444443
No 39
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=78.81 E-value=23 Score=28.17 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=60.2
Q ss_pred eeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCC-CCCCCEEEEeceEE
Q 031443 35 FTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDL-MKPGTTVILRNAKI 113 (159)
Q Consensus 35 ~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~-i~~Gdvv~I~na~v 113 (159)
.-||.+|.-..++. +.--+..+..... + ..-.---|.|.||.+-+..-+..-.. .++||.+++.----
T Consensus 114 TpKI~~L~~qa~Gt-~V~GlF~v~kk~v--~--------~~~~~yeI~D~tG~MeVvv~G~~~~i~CeeGdkLrL~cF~L 182 (206)
T 2oq0_A 114 TLKIDILHKQASGN-IVYGVFMLHKKTV--N--------QKTTIYEIQDDRGKMDVVGTGQCHNIPCEEGDKLQLFCFRL 182 (206)
T ss_dssp CCCHHHHTTSCTTC-EEEEEEEEEEEEE--C--------SSEEEEEEEETTEEEEEEEEGGGSSCCCCTTCEEEEEEEEE
T ss_pred CccchhhhccCCcc-EEceEEEEEEEee--c--------cceEEEEEccCCCcEEEEEeCcccccccCCCCEEEEEEEEe
Confidence 34688888777763 3333333332111 1 22445568999999999777755343 59999999987777
Q ss_pred ceeCCeEEEEeCCceeEEEc
Q 031443 114 DMFKGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 114 ~~~~G~~~L~vgk~g~I~~~ 133 (159)
+...+...|..+..+.|...
T Consensus 183 ~~~~~~~~L~S~~hSfikvi 202 (206)
T 2oq0_A 183 RKKNQMSKLISEMHSFIQIK 202 (206)
T ss_dssp EEETTEEEEECCTTCEEEEC
T ss_pred eccCCcceEEEecceeEEEE
Confidence 77788999999988877654
No 40
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=78.46 E-value=7.1 Score=27.96 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC--cCCCCCCCEEEEeceEEceeCCeEE
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ--VDLMKPGTTVILRNAKIDMFKGSMR 121 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~--~~~i~~Gdvv~I~na~v~~~~G~~~ 121 (159)
+...|.|++.|++--.- -..++.|.||.|.+.+=++. .-.+.|++.|+|.+-+-+.|+ ..+
T Consensus 36 Dd~~V~L~G~Iv~~~~~----------------d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDkd~~-~~e 98 (109)
T 1nnx_A 36 DDTWVTLRGNIVERISD----------------DLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDKDWN-SVE 98 (109)
T ss_dssp SSEEEEEEEEEEEEEET----------------TEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEEETT-EEE
T ss_pred CCCeEEEEEEEEEEeCC----------------CeEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECCCCC-ceE
Confidence 45568999999873210 13678999999999864332 235799999999999988775 567
Q ss_pred EEeCC
Q 031443 122 IAVDK 126 (159)
Q Consensus 122 L~vgk 126 (159)
|.+.+
T Consensus 99 IdV~~ 103 (109)
T 1nnx_A 99 IDVKQ 103 (109)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76655
No 41
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=76.39 E-value=16 Score=25.55 Aligned_cols=74 Identities=16% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeC-----ce------e-EEEEEecCCc---CCCCCCCEEEEe
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDD-----TG------T-ILFTARNDQV---DLMKPGTTVILR 109 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDe-----TG------~-I~ltlWde~~---~~i~~Gdvv~I~ 109 (159)
|+.+.|.+++..-.+.+-++ .| ..|++..|+-+ .| . |++++|+..+ ..+..|+.|.|.
T Consensus 2 MN~v~L~GrLt~dPelRyTp--sG-----~~V~~f~LA~~s~~~e~g~~r~~~f~i~vv~wGk~AE~~~~~~kGs~V~Ve 74 (101)
T 3en2_A 2 INRLQLVATLVEREVMRYTP--AG-----VPIVNCLLSYSGQAMEAQAARQVEFSIEALGAGKMASVLDRIAPGTVLECV 74 (101)
T ss_dssp CCCEEEEEEEEEECCCEECT--TC-----CEEEEEEEEEEEEEECC--EEEEEEEEEEEEETHHHHHHTTSCTTCEEEEE
T ss_pred cCEEEEEEEECcCccEEECC--CC-----CEEEEEEEEEcceEecCCCcEeeeEEEEEEEEhHHHHHHhhcCCCCEEEEE
Confidence 67788999998877765432 34 45777777643 23 2 8889998543 447899999999
Q ss_pred ceEEce-e-CCeEEEEeC
Q 031443 110 NAKIDM-F-KGSMRIAVD 125 (159)
Q Consensus 110 na~v~~-~-~G~~~L~vg 125 (159)
+-.... + .-.+.|.|.
T Consensus 75 GrL~trs~~s~~lvlhi~ 92 (101)
T 3en2_A 75 GFLARKHRSSKALVFHIS 92 (101)
T ss_dssp EEEEECC----CEEEEEE
T ss_pred EEEEeCcCCCCeeEEEEe
Confidence 988743 2 245666654
No 42
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=75.70 E-value=10 Score=33.68 Aligned_cols=75 Identities=7% Similarity=0.041 Sum_probs=57.6
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcc-eEEEEEEeeCceeEEEEEecCCc----------CCCCCCCEEEEeceEEc
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQT-RIAECLVGDDTGTILFTARNDQV----------DLMKPGTTVILRNAKID 114 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~-~V~~~lVgDeTG~I~ltlWde~~----------~~i~~Gdvv~I~na~v~ 114 (159)
..|.|.++|.++-. .+ +++=+.|-|.+|.|.+.+-.+.. ..+..||+|.|.|-..+
T Consensus 56 ~~V~v~Grv~~~R~-------------~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~ 122 (521)
T 3bju_A 56 ITLKVAGRIHAKRA-------------SGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGK 122 (521)
T ss_dssp CCEEEEEEEEEEEE-------------SSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred cEEEEEEEEEEEec-------------CCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 44888999988532 13 68888999999999998864321 24789999999999888
Q ss_pred eeCCeEEEEeCCceeEEEc
Q 031443 115 MFKGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 115 ~~~G~~~L~vgk~g~I~~~ 133 (159)
.-.|.++|.+.++--+.+.
T Consensus 123 t~~ge~ei~~~~i~~l~~~ 141 (521)
T 3bju_A 123 TKKGELSIIPYEITLLSPC 141 (521)
T ss_dssp CTTCCEEEEEEEEEEEECC
T ss_pred cCCCCEEEEEeEEEEeecC
Confidence 7789999999886555543
No 43
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=75.62 E-value=17 Score=32.02 Aligned_cols=88 Identities=13% Similarity=0.056 Sum_probs=61.6
Q ss_pred CceeecccCCCC---CCCceEEEEEEecCcccccccCCCCCCCcceE-EEEEEeeCceeEEEEEecC--C---------c
Q 031443 33 PVFTKVDQLKPG---TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRI-AECLVGDDTGTILFTARND--Q---------V 97 (159)
Q Consensus 33 ~~~~kI~dL~P~---~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V-~~~lVgDeTG~I~ltlWde--~---------~ 97 (159)
..++.|++|.+. ...|.|.+.|.++-. - +.+ +=+.|-|.+|.|.+.+=.+ . +
T Consensus 21 ~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~-------~------g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~ 87 (487)
T 1eov_A 21 QKRVKFVDLDEAKDSDKEVLFRARVHNTRQ-------Q------GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWA 87 (487)
T ss_dssp CCCCCGGGCCTTTTTTCEEEEEEEEEEEEE-------C------SSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHH
T ss_pred cceeEHHHhcccccCCCEEEEEEEEEEeec-------c------CCccEEEEEEECCccEEEEEeccccccccHHHHHHH
Confidence 455678888754 344788888877532 1 334 7788899999999887432 1 2
Q ss_pred CCCCCCCEEEEeceEEcee-------CCeEEEEeCCceeEEEc
Q 031443 98 DLMKPGTTVILRNAKIDMF-------KGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 98 ~~i~~Gdvv~I~na~v~~~-------~G~~~L~vgk~g~I~~~ 133 (159)
..+..||+|.|.+-..+.- .|.++|.+.+.--+.+.
T Consensus 88 ~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a 130 (487)
T 1eov_A 88 GSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISET 130 (487)
T ss_dssp TTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECC
T ss_pred hcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecc
Confidence 3589999999999876654 26789988876555544
No 44
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=74.04 E-value=1.6 Score=40.63 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=50.7
Q ss_pred eeecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC--CcCCCCC--CCEEEEec
Q 031443 35 FTKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND--QVDLMKP--GTTVILRN 110 (159)
Q Consensus 35 ~~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde--~~~~i~~--Gdvv~I~n 110 (159)
..+|.++.+|.. +.+.++|.+..... + | ...+..+.+.|+||.+.++.++. ....+++ |..+.+.+
T Consensus 156 ~~~~~~~~~~~~-~~~~~~v~~~~~~~---~--~----~~~~~~~~~~d~~~~~~~~~f~~~~~~~~~~~~~g~~~~~~G 225 (780)
T 1gm5_A 156 IFKLNDLLPGEK-VTTQGKIVSVETKK---F--Q----NMNILTAVLSDGLVHVPLKWFNQDYLQTYLKQLTGKEVFVTG 225 (780)
T ss_dssp CCCSSCCCSSCC-CEEEECCCCCEEEE---C--S----SCEEEEEEECCSSCCEEEEECSCCTTHHHHHTTCSSCEEEEE
T ss_pred CCcHHHcCCCCE-EEEEEEEEEEEeec---C--C----CCeEEEEEEEECCceEEEEEECcHHHHhhCccCCCCEEEEEE
Confidence 456788888764 78999998864321 1 1 14678899999999999988873 1234678 99999987
Q ss_pred eEEc
Q 031443 111 AKID 114 (159)
Q Consensus 111 a~v~ 114 (159)
-...
T Consensus 226 ~~~~ 229 (780)
T 1gm5_A 226 TVKS 229 (780)
T ss_dssp EECS
T ss_pred EEEE
Confidence 6643
No 45
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=72.95 E-value=8.7 Score=33.30 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=59.2
Q ss_pred ecccCCCC--CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC--------CcCCCCCCCEE
Q 031443 37 KVDQLKPG--TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND--------QVDLMKPGTTV 106 (159)
Q Consensus 37 kI~dL~P~--~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde--------~~~~i~~Gdvv 106 (159)
.|++|.+. ...|.|.+.|.++-. .+.++=+.|-|.+|.|.+.+-.+ .+..+..||+|
T Consensus 6 ~~~~l~~~~~~~~V~v~G~v~~~R~-------------~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v 72 (434)
T 1x54_A 6 YCQEVKPELDGKKVRLAGWVYTNMR-------------VGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSV 72 (434)
T ss_dssp CGGGCCGGGTTCEEEEEEEEEEEEE-------------ETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEE
T ss_pred EHHHhhHHhCCCEEEEEEEEEEEec-------------CCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEE
Confidence 35566532 344788888887532 14578889999999999988532 12458999999
Q ss_pred EEeceEEceeCC--eEEEEeCCceeEEEc
Q 031443 107 ILRNAKIDMFKG--SMRIAVDKWGRIEAT 133 (159)
Q Consensus 107 ~I~na~v~~~~G--~~~L~vgk~g~I~~~ 133 (159)
.|.+...+.-.+ .++|.+.+.--+.+.
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~ 101 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV 101 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC
Confidence 999988766543 799988876555444
No 46
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=72.36 E-value=4.9 Score=30.11 Aligned_cols=66 Identities=11% Similarity=0.034 Sum_probs=45.5
Q ss_pred CCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe-eC------------ceeEEEEEecCCcC----CCCCCC
Q 031443 42 KPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG-DD------------TGTILFTARNDQVD----LMKPGT 104 (159)
Q Consensus 42 ~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg-De------------TG~I~ltlWde~~~----~i~~Gd 104 (159)
.|.++.+.|.++|..-.+.+.+. .| ..|+...|| +. |--+++++|+..++ .++.|+
T Consensus 13 ~~~~N~V~LiGrL~~DPelr~t~--~G-----~~va~f~lAv~~r~~~~~~Ge~~~t~~~~v~~wg~~Ae~~~~~l~KG~ 85 (153)
T 1z9f_A 13 MSFFNKIILIGRLVRDPEERYTL--SG-----TPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFARTYLTKGR 85 (153)
T ss_dssp CSCCCCEEEEEEESSCCEEEECC---------CEEEEEEEEEEC-----------CEEEEEEEEEHHHHHHHHHHCCTTC
T ss_pred ccceeEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCCccccCCCCEeeeEEEEEEEECHHHHHHHhhCCCCC
Confidence 46778889999988766655432 23 457776665 11 44689999986553 379999
Q ss_pred EEEEeceEEc
Q 031443 105 TVILRNAKID 114 (159)
Q Consensus 105 vv~I~na~v~ 114 (159)
.|.|.+-...
T Consensus 86 ~V~VeGrL~~ 95 (153)
T 1z9f_A 86 LVLVEGEMRM 95 (153)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999988654
No 47
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=71.97 E-value=14 Score=33.36 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=57.8
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC-----CcCCCCCCCEEEEeceEEce-----
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND-----QVDLMKPGTTVILRNAKIDM----- 115 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde-----~~~~i~~Gdvv~I~na~v~~----- 115 (159)
..|.|.+.|..+-. .+.+.=+.|-|.+|.|.+.+-.+ .+..+..|++|.|.|-...-
T Consensus 17 ~~V~l~GwV~~~R~-------------~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~ 83 (580)
T 1l0w_A 17 EEVVLEGWVNRRRD-------------LGGLIFLDLRDREGLVQLVAHPASPAYATAERVRPEWVVRAKGLVRLRPEPNP 83 (580)
T ss_dssp CEEEEEEEEEEEEE-------------CSSCEEEEEEETTEEEEEEECTTSTTHHHHTTCCTTCEEEEEEEEEECSSCCT
T ss_pred CEEEEEEEEEEEec-------------CCCeEEEEEEECCeeEEEEEeCChhHHHHHhcCCCCcEEEEEEEEEcCCCcCc
Confidence 34788888877532 14577788999999999987432 23458999999999987754
Q ss_pred --eCCeEEEEeCCceeEEEcCCCcEEE
Q 031443 116 --FKGSMRIAVDKWGRIEATEPAKFVV 140 (159)
Q Consensus 116 --~~G~~~L~vgk~g~I~~~~~~~~~v 140 (159)
-.|.++|.+.+.--+.+..+.++.+
T Consensus 84 ~~~~ge~Ei~~~~i~vl~~a~~lP~~i 110 (580)
T 1l0w_A 84 RLATGRVEVELSALEVLAEAKTPPFPV 110 (580)
T ss_dssp TSTTTTEEEEEEEEEEEECCCCCSSCC
T ss_pred cCCCccEEEEEeEEEEeccCcCCCCCc
Confidence 3578999998865555543333444
No 48
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=70.76 E-value=22 Score=24.71 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=51.5
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee-----Cce------e-EEEEEecCC--cCCCCCCCEEEEece
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD-----DTG------T-ILFTARNDQ--VDLMKPGTTVILRNA 111 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD-----eTG------~-I~ltlWde~--~~~i~~Gdvv~I~na 111 (159)
+.+.|.+++..-.+.+-++ .| ..|++..||= ++| . +++++|+.. +..+..|+-|.|.+-
T Consensus 8 Nkv~LiG~L~~dPelRytp--~G-----~~v~~f~lA~~~~~~~~g~~~~~~~~i~vv~~gk~Ae~~~l~KG~~v~veGr 80 (103)
T 3k8a_A 8 NLVSLAALIEKAFPIRYTP--AG-----IPVLDIILKHESWQEENGQQCLVQLEIPARILGRQAEEWQYRQGDCATVEGF 80 (103)
T ss_dssp EEEEEEEEEEEECCCEECT--TS-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEHHHHHHSTTCTTCEEEEEEE
T ss_pred cEEEEEEEECCCCceEECC--CC-----CEEEEEEEEEcccCccCCCEEEeeEEEEEEEEhHHhhhhccCCCCEEEEEEE
Confidence 5578889888877765443 34 4688887774 233 3 899999843 456899999999998
Q ss_pred EEc-eeCC-eEEEEeCC
Q 031443 112 KID-MFKG-SMRIAVDK 126 (159)
Q Consensus 112 ~v~-~~~G-~~~L~vgk 126 (159)
... -|++ .+.|++..
T Consensus 81 L~~rs~~~~~lvlhi~~ 97 (103)
T 3k8a_A 81 LAQKSRRSLMPMLRIQN 97 (103)
T ss_dssp EEESSSSCCCEEEEEEE
T ss_pred EEECccCCccEEEEEEE
Confidence 773 3444 56666554
No 49
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=70.45 E-value=6.7 Score=27.50 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=42.1
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee-----------CceeEEEEEecCCcC----CCCCCCEEEEe
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD-----------DTGTILFTARNDQVD----LMKPGTTVILR 109 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD-----------eTG~I~ltlWde~~~----~i~~Gdvv~I~ 109 (159)
++.+.|.++|..-.+.+.+. .| ..++...||= +|--+++++|+..++ .+..|+.|.|.
T Consensus 5 mN~v~l~G~l~~dpe~r~t~--~G-----~~v~~f~la~~~~~~~~~g~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~V~ 77 (116)
T 3vdy_A 5 FNQVMLVGRLTKDPDLRYTS--AG-----AAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVS 77 (116)
T ss_dssp CCCEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEECSSCCSSSCCCEEEEEEEEEHHHHHHHHHHCCTTCEEEEE
T ss_pred EeEEEEEEEEccCcEEEECC--CC-----CEEEEEEEEEeccccCCCCccccEEEEEEEECHHHHHHHHhCCCCCEEEEE
Confidence 56677888877655544332 23 3466655542 344699999986553 37999999999
Q ss_pred ceEEc
Q 031443 110 NAKID 114 (159)
Q Consensus 110 na~v~ 114 (159)
+-...
T Consensus 78 G~l~~ 82 (116)
T 3vdy_A 78 GRIQT 82 (116)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
No 50
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=69.94 E-value=5.1 Score=29.54 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=42.1
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe--------------eCceeEEEEEecCCcC----CCCCCCEE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG--------------DDTGTILFTARNDQVD----LMKPGTTV 106 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg--------------DeTG~I~ltlWde~~~----~i~~Gdvv 106 (159)
++.|.|.++|..-.+.+.+. +| ..|+...|+ |+|=-+++++|+..++ .++.|+.|
T Consensus 5 mN~v~L~GrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~~~~~Ge~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V 77 (145)
T 1qvc_A 5 VNKVILVGNLGQDPEVRYMP--NG-----GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQV 77 (145)
T ss_dssp EEEEEEEEEESSCCEEECCS--SS-----CCEEEEEEEECCCCSCCSSSSCCCCCEEEEEEEETHHHHHHHHHCCTTCEE
T ss_pred eEEEEEEEEeCCCCEEEECC--CC-----CEEEEEEEEEcCCcccccCCcEecccEEEEEEEehHHHHHHHHhcCCCCEE
Confidence 44567777776655554332 23 346666664 2355799999986553 47999999
Q ss_pred EEeceEEc
Q 031443 107 ILRNAKID 114 (159)
Q Consensus 107 ~I~na~v~ 114 (159)
.|.+-...
T Consensus 78 ~V~G~L~~ 85 (145)
T 1qvc_A 78 YIEGQLRT 85 (145)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 99987654
No 51
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=69.43 E-value=12 Score=33.51 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCC--------cCCCCCCCEEEEeceEEceeC
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQ--------VDLMKPGTTVILRNAKIDMFK 117 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~--------~~~i~~Gdvv~I~na~v~~~~ 117 (159)
..|.|.+.|..+-. .++++=+.|-|.+|.|.+.+=.+. ...+..||+|.|.+-..+.-.
T Consensus 87 ~~V~v~GwV~~~R~-------------~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ 153 (529)
T 4ex5_A 87 LEVAIAGRMMLKRV-------------MGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNK 153 (529)
T ss_dssp CEEEEEEEEEEEEE-------------ETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTT
T ss_pred cEEEEEEEEEeeec-------------CCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCC
Confidence 34778888877532 145777889999999998775322 235899999999998888778
Q ss_pred CeEEEEeCCceeEEEc
Q 031443 118 GSMRIAVDKWGRIEAT 133 (159)
Q Consensus 118 G~~~L~vgk~g~I~~~ 133 (159)
|.++|.+.+.--+.+.
T Consensus 154 gelel~~~~i~vLs~a 169 (529)
T 4ex5_A 154 GELSVKCTQLRLLAKA 169 (529)
T ss_dssp SCEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEEEEecC
Confidence 9999998876555444
No 52
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=68.75 E-value=9.2 Score=28.92 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=44.1
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee---------------CceeEEEEEecCCc----CCCCCCC
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD---------------DTGTILFTARNDQV----DLMKPGT 104 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD---------------eTG~I~ltlWde~~----~~i~~Gd 104 (159)
+++.|.|.++|..-.+.+.+. +| ..|++..||= +|--+++++|..++ ..++.|+
T Consensus 3 ~~N~V~LiG~L~~dPelr~t~--~G-----~~va~f~lAv~~~~~~~~~Ge~~d~~t~~~~v~~wg~~Ae~~~~~l~KG~ 75 (168)
T 3afp_A 3 GDTTITIVGNLTADPELRFTS--SG-----AAVVNFTVASTPRIYDRQSGEWKDGEALFLRCNIWREAAENVAESLTRGA 75 (168)
T ss_dssp CCCEEEEEEEESSSCCCEECT--TS-----CEEEEEEEEECC--------CCCCCCCEEEEEEEEHHHHHHHHHHCCTTC
T ss_pred ccCEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEccccccccCCcEecCCcEEEEEEEehHHHHHHHHhCCCCC
Confidence 355678888887766655432 33 4577766661 24469999998654 3479999
Q ss_pred EEEEeceEEc
Q 031443 105 TVILRNAKID 114 (159)
Q Consensus 105 vv~I~na~v~ 114 (159)
.|.|.+-...
T Consensus 76 ~V~VeGrL~~ 85 (168)
T 3afp_A 76 RVIVTGRLKQ 85 (168)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999987653
No 53
>3rlo_A Gamma-interferon-inducible protein 16; HIN200/OB fold/DNA binding, DNA binding/cytosolic DNA sensor cytosol, DNA binding protein; 1.80A {Homo sapiens} PDB: 3rnu_A* 3b6y_A 3rln_A
Probab=67.77 E-value=20 Score=28.50 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=56.3
Q ss_pred eecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCcCC-CCCCCEEEEeceEEc
Q 031443 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQVDL-MKPGTTVILRNAKID 114 (159)
Q Consensus 36 ~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~~~-i~~Gdvv~I~na~v~ 114 (159)
-||.+|.....|. +.--+..+..... + ....---|-|.||.+-+...+...+. .++||-++|.==-.+
T Consensus 107 PKI~~L~~q~~Gt-~V~G~F~v~KK~v--~--------~~~~~YeI~DnTG~MeVvv~G~~~~i~CEeGDKLrL~cFeL~ 175 (204)
T 3rlo_A 107 PKINQLCSQTKGS-FVNGVFEVHKKNV--R--------GEFTYYEIQDNTGKMEVVVHGRLTTINCEEGDKLKLTCFELA 175 (204)
T ss_dssp CCHHHHHTCSSCE-EEEEEEEEEEEEE--E--------TTEEEEEEEETTEEEEEEECGGGGGCCCCTTCEEEEEEEEEE
T ss_pred cchhhhhcCCCCC-EEeEEEEEEEEEe--c--------cceEEEEEecCCCcEEEEEeccCcccccCCCCeeEEEEEEEe
Confidence 3688888777763 3323333332211 1 12444567899999999877765443 599999999765554
Q ss_pred ee-CCeEEEEeCCceeEEEc
Q 031443 115 MF-KGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 115 ~~-~G~~~L~vgk~g~I~~~ 133 (159)
.. .+.+.|..+..+-|..+
T Consensus 176 ~~~~~~~qL~s~~HSfikVi 195 (204)
T 3rlo_A 176 PKSGNTGELRSVIHSHIKVI 195 (204)
T ss_dssp CCTTTTCEEEEEEEEEEEEE
T ss_pred cccCCceeEEEecceeEEEE
Confidence 43 47888988888877655
No 54
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=66.54 E-value=9.5 Score=27.67 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=41.7
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe------e-------CceeEEEEEecCCcC----CCCCCCEEE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG------D-------DTGTILFTARNDQVD----LMKPGTTVI 107 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg------D-------eTG~I~ltlWde~~~----~i~~Gdvv~ 107 (159)
++.+.|.++|..-.+.+.+. .| ..|+...|| | +|=-+++++|+..++ .++.|+.|.
T Consensus 2 mN~V~L~GrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~wg~~Ae~~~~~l~KG~~V~ 74 (134)
T 2vw9_A 2 FNKVIMVGRLTRNVELKYLP--SG-----SAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVL 74 (134)
T ss_dssp CCCEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEHHHHHHHHHHCCTTCEEE
T ss_pred eeEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEeCCeECCCCCCccccEEEEEEEEcHHHHHHHHhCCCCCEEE
Confidence 45577888877655554332 23 346665553 2 344699999986553 379999999
Q ss_pred EeceEEc
Q 031443 108 LRNAKID 114 (159)
Q Consensus 108 I~na~v~ 114 (159)
|.+-...
T Consensus 75 V~G~L~~ 81 (134)
T 2vw9_A 75 IEGRLTY 81 (134)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9988764
No 55
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=65.55 E-value=12 Score=33.05 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=56.9
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC--------CcCCCCCCCEEEEeceEEceeC
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND--------QVDLMKPGTTVILRNAKIDMFK 117 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde--------~~~~i~~Gdvv~I~na~v~~~~ 117 (159)
..|.|.+.|..+-. .++++=+.|-|.+|.|.+.+-.+ .+..+..||+|.|.+-..+.-.
T Consensus 57 ~~V~v~Gwv~~~R~-------------~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ 123 (493)
T 3a74_A 57 IEVAVAGRIMTKRG-------------MGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKV 123 (493)
T ss_dssp CEEEEEEEEEEEEE-------------ETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTT
T ss_pred CEEEEEEEEEEEec-------------CCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCC
Confidence 34788888887532 24577889999999999988532 1234799999999999888778
Q ss_pred CeEEEEeCCceeEEEc
Q 031443 118 GSMRIAVDKWGRIEAT 133 (159)
Q Consensus 118 G~~~L~vgk~g~I~~~ 133 (159)
|.++|.+.+.--+.+.
T Consensus 124 ge~ei~~~~i~vl~~~ 139 (493)
T 3a74_A 124 GELSIKVSSYEFLTKA 139 (493)
T ss_dssp CCEEEEEEEEEEEECC
T ss_pred CcEEEEEEEEEEcccc
Confidence 9999999886555443
No 56
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=64.69 E-value=17 Score=26.01 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=50.2
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeC-----cee-------EEEEEecCCc---CCCCCCCEEEEe
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDD-----TGT-------ILFTARNDQV---DLMKPGTTVILR 109 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDe-----TG~-------I~ltlWde~~---~~i~~Gdvv~I~ 109 (159)
|+.+.|.+++..-.+.+-++ .| ..|++..||-+ .|. |++++|+..+ ..+..|+-|.|.
T Consensus 1 MNkviL~GrL~~dPelRyTp--sG-----~~V~~f~LA~~~~~~~~g~~r~~~~~i~vv~~Gk~AE~~~~l~kGs~V~Ve 73 (115)
T 3fhw_A 1 MNTLELSARVLECGAMRHTP--AG-----LPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQ 73 (115)
T ss_dssp CEEEEEEEEEEEECCCEECT--TS-----CEEEEEEEEEEEECCCCC--CEEEEEEEEEEETHHHHHHTTCCTTCEEEEE
T ss_pred CCEEEEEEEECcCcceEECC--CC-----CEEEEEEEEEcceeecCCCeeeeeEEEEEEEEhHHHHhhhccCCCCEEEEE
Confidence 34567888888777665332 34 45788777643 333 8999998544 568999999999
Q ss_pred ceEEceeC--CeEEEEeCC
Q 031443 110 NAKIDMFK--GSMRIAVDK 126 (159)
Q Consensus 110 na~v~~~~--G~~~L~vgk 126 (159)
+-.....+ ..++|.+..
T Consensus 74 GrL~trs~~G~kl~l~a~~ 92 (115)
T 3fhw_A 74 GFLAPARKDSVKVKLHLQQ 92 (115)
T ss_dssp EEEEESSTTCSSEEEEEEE
T ss_pred EEEEECCCCCCEEEEEEEE
Confidence 98775332 256666555
No 57
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=63.28 E-value=37 Score=23.98 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=45.0
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe-----eCceeEEEEEecCCcCCC--CCCCEEEEeceEE
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG-----DDTGTILFTARNDQVDLM--KPGTTVILRNAKI 113 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg-----DeTG~I~ltlWde~~~~i--~~Gdvv~I~na~v 113 (159)
+.|.|.+++..-.+.+.+. .| ..++...|| +++--|++++|..+++.+ ..|+-|.|.+-.-
T Consensus 12 N~V~LiGrl~~dpelr~t~--~G-----~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G~lr 79 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHEL--YG-----EKFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEGQLR 79 (107)
T ss_dssp SCEEEEEEECSCCEEEEEE--TT-----EEEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEEEEE
T ss_pred CEEEEEEEECCCceEEEec--CC-----cEEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEEEEE
Confidence 4578888887765544332 34 457777776 788999999999777654 5899999998663
No 58
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=62.74 E-value=21 Score=32.14 Aligned_cols=75 Identities=9% Similarity=0.024 Sum_probs=54.7
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecC------CcCCCCCCCEEEEeceEEce----
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARND------QVDLMKPGTTVILRNAKIDM---- 115 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde------~~~~i~~Gdvv~I~na~v~~---- 115 (159)
..|.|.+.|-.+-. .+.+.=+.|-|.+|.|-+++=.+ .+..+..|++|.|.+-....
T Consensus 16 ~~V~l~GwV~~~R~-------------~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~ 82 (585)
T 1c0a_A 16 QQVTLCGWVNRRRD-------------LGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKN 82 (585)
T ss_dssp CEEEEEEEEEEEEE-------------CSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTT
T ss_pred CEEEEEEEEEEEec-------------CCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCccc
Confidence 34788888877532 14577788999999999887322 23468999999999987654
Q ss_pred -----eCCeEEEEeCCceeEEEc
Q 031443 116 -----FKGSMRIAVDKWGRIEAT 133 (159)
Q Consensus 116 -----~~G~~~L~vgk~g~I~~~ 133 (159)
-.|.++|.+.+.--+.+.
T Consensus 83 ~n~~~~~geiEl~~~~i~vl~~a 105 (585)
T 1c0a_A 83 INRDMATGEIEVLASSLTIINRA 105 (585)
T ss_dssp CCTTSTTTTEEEEEEEEEEEECC
T ss_pred ccccCCCccEEEEEeEEEEEecc
Confidence 357899999886555544
No 59
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=61.61 E-value=7.2 Score=38.42 Aligned_cols=80 Identities=14% Similarity=0.159 Sum_probs=39.7
Q ss_pred ecccCC------CCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCc----CCCCCCCEE
Q 031443 37 KVDQLK------PGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQV----DLMKPGTTV 106 (159)
Q Consensus 37 kI~dL~------P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~----~~i~~Gdvv 106 (159)
++.+|. +....+.+-+.|.++..+.+++ | ..|+-+.+.|+||.+.+++|.+.. ..+.+|..|
T Consensus 1028 ~~~~l~~~~~~~~~g~~v~v~G~v~~~~~~~Tk~---G-----~~maf~tleD~tg~~evvvf~~~~~~~~~~l~~~~~~ 1099 (1220)
T 2hpi_A 1028 TIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRS---G-----GMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPL 1099 (1220)
T ss_dssp CTTTHHHHHSSSSSSCEEEEEEEECCC--------------------CEEEEETTEEEEEC-------------CTTCEE
T ss_pred cHHHHhhhhhhccCCCeEEEEEEEEEEEEeecCC---C-----CeEEEEEEEECCCCEEEEEcHHHHHHHHHHhccCCEE
Confidence 556663 2233467888888887765432 3 468999999999999999997533 446888888
Q ss_pred EEeceEEceeCCeEEEEeCC
Q 031443 107 ILRNAKIDMFKGSMRIAVDK 126 (159)
Q Consensus 107 ~I~na~v~~~~G~~~L~vgk 126 (159)
.|.+-..+.. .++|.+.+
T Consensus 1100 ~v~G~v~~~~--~~~l~~~~ 1117 (1220)
T 2hpi_A 1100 LVLAEVEKGE--ELRVLAQA 1117 (1220)
T ss_dssp EEEEEEC-------CEEEEE
T ss_pred EEEEEEEECC--CcEEEEee
Confidence 8876553322 35555544
No 60
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=61.50 E-value=6.2 Score=28.11 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=41.4
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe--------------eCceeEEEEEec-CCcC----CCCCCCE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG--------------DDTGTILFTARN-DQVD----LMKPGTT 105 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg--------------DeTG~I~ltlWd-e~~~----~i~~Gdv 105 (159)
++.+.|.+++..-.+.+.+. +| ..++...|| |+|--+++++|+ ..++ .++.|+.
T Consensus 6 ~N~v~l~Grl~~dpelr~t~--~G-----~~v~~f~lA~~~~~~~~~~G~~~~~t~~~~v~~wg~~~Ae~~~~~l~KG~~ 78 (124)
T 3ulp_A 6 LNKIMLIGRVGCEPDIKILN--GG-----DKVATFSLATNEFWRDRNTNELKSKTDWHRIVVYDQNIVDLIDKYLRKGRR 78 (124)
T ss_dssp EEEEEEEEEECSCCEEEECT--TS-----CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred ceEEEEEEEECCCcEEEECC--CC-----CEEEEEEEEEccceecccCCcEecccEEEEEEEEEchHHHHHHhhcCCCCE
Confidence 44567777777655554432 33 346665554 234469999999 5553 3799999
Q ss_pred EEEeceEEc
Q 031443 106 VILRNAKID 114 (159)
Q Consensus 106 v~I~na~v~ 114 (159)
|.|.+-...
T Consensus 79 V~V~G~L~~ 87 (124)
T 3ulp_A 79 VYVQGSLHT 87 (124)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999988763
No 61
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=59.62 E-value=11 Score=30.12 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=27.2
Q ss_pred eEEEEEecCCcCCCCCCCEEEEeceEEceeCC
Q 031443 87 TILFTARNDQVDLMKPGTTVILRNAKIDMFKG 118 (159)
Q Consensus 87 ~I~ltlWde~~~~i~~Gdvv~I~na~v~~~~G 118 (159)
++.+.|-++..+.++|||.|.|.|-|...+..
T Consensus 212 si~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~ 243 (268)
T 2vl6_A 212 QLEIILEDDLVDSARPGDRVKVTGILDIKQDS 243 (268)
T ss_dssp EEEEEEEGGGTTSSCTTCEEEEEEEEEEECSS
T ss_pred EEEEEEccCccCcccCCCEEEEEEEEEEeecc
Confidence 56777778999999999999999999877653
No 62
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=58.00 E-value=5.2 Score=30.50 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.2
Q ss_pred ceEEEEEEeeCceeEEEEEecCCc
Q 031443 74 TRIAECLVGDDTGTILFTARNDQV 97 (159)
Q Consensus 74 ~~V~~~lVgDeTG~I~ltlWde~~ 97 (159)
..+.++.|+|.||.+.++++++.+
T Consensus 78 ry~l~~~i~D~Tg~~~~t~F~~~a 101 (181)
T 1l1o_C 78 RMILSVNIADFQENQWVTCFQESA 101 (181)
T ss_dssp EEEEEEEEECSSCEEEEEEEHHHH
T ss_pred EEEEEEEEEeCCCCEEEEEEhHHH
Confidence 457889999999999999999765
No 63
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=57.30 E-value=9.5 Score=27.45 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=41.1
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe-------------------eCceeEEEEEecC-CcC----C
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG-------------------DDTGTILFTARND-QVD----L 99 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg-------------------DeTG~I~ltlWde-~~~----~ 99 (159)
+++.|.|.++|..-.+.+.+. .| ..|+...|| +.|--+++++|++ .++ .
T Consensus 13 ~mN~V~L~GrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~~~~g~~~~~g~~~~~t~w~~v~~wg~~~Ae~~~~~ 85 (132)
T 3ull_A 13 SLNRVHLLGRVGQDPVLRQVE--GK-----NPVTIFSLATNEMWRSGDSEVYQLGDVSQKTTWHRISVFRPGLRDVAYQY 85 (132)
T ss_dssp CEEEEEEEEEECSCCEEECCT--TS-----CCEEEEEEEEEEEECC---------CCEEEEEEEEEEECSTTHHHHHHHH
T ss_pred cCcEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEecceeccccccccCCceecceEEEEEEEEchHHHHHHHhh
Confidence 456677777777755554332 23 235544443 2355688999994 543 3
Q ss_pred CCCCCEEEEeceEEc
Q 031443 100 MKPGTTVILRNAKID 114 (159)
Q Consensus 100 i~~Gdvv~I~na~v~ 114 (159)
+..|+.|.|.+-...
T Consensus 86 l~KG~~V~V~G~L~~ 100 (132)
T 3ull_A 86 VKKGSRIYLEGKIDY 100 (132)
T ss_dssp CCTTCEEEEEEEEEC
T ss_pred CCCCCEEEEEEEEEe
Confidence 799999999988764
No 64
>2oq0_A Gamma-interferon-inducible protein IFI-16; OB folds, beta-barrels, structural genomics, PSI-2, protein initiative; 2.00A {Homo sapiens} SCOP: b.40.16.1 b.40.16.1
Probab=57.21 E-value=57 Score=25.85 Aligned_cols=78 Identities=9% Similarity=0.168 Sum_probs=61.4
Q ss_pred EEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEEecCCc-CCCCCCCEEEEeceEEceeCCeEEEEeCCce
Q 031443 50 LTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTARNDQV-DLMKPGTTVILRNAKIDMFKGSMRIAVDKWG 128 (159)
Q Consensus 50 v~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltlWde~~-~~i~~Gdvv~I~na~v~~~~G~~~L~vgk~g 128 (159)
+.+.||...+|.++.+.. .+...|..+.||-+|--.++-..+-.. +.+.+..+|.|.|-+. ++|.+++ ...+
T Consensus 18 ~~VmVLkat~pF~ye~~E---~~k~~MFHATVATetqfF~VKVfn~~LkeKF~~k~iI~ISdY~~--~~g~lEv--~~~s 90 (206)
T 2oq0_A 18 VIVKVLSTTKPFEYETPE---MEKKIMFHATVATQTQFFHVKVLNTSLKEKFNGKKIIIISDYLE--YDSLLEV--NEES 90 (206)
T ss_dssp EEEEEEEECCCEEEECCC-----EEEEEEEEEECSSCEEEEEECCGGGGGGGSSSSEEEEESBEE--ETTEEEE--CTTC
T ss_pred eEEEEEecccceEEechh---cccceeEEEEEeecceeEEEEEeechhhhhcccCceEEEEeecc--ccceeee--eccc
Confidence 789999999887766533 123569999999999999999999544 5589999999999874 4786664 5778
Q ss_pred eEEEcC
Q 031443 129 RIEATE 134 (159)
Q Consensus 129 ~I~~~~ 134 (159)
.|..++
T Consensus 91 sVse~~ 96 (206)
T 2oq0_A 91 TVSEAG 96 (206)
T ss_dssp EEEECC
T ss_pred eEEecc
Confidence 887776
No 65
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=57.15 E-value=16 Score=29.18 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=44.2
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe----------eCceeEEEEEecCCc---CCCCCCCEEEEec
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG----------DDTGTILFTARNDQV---DLMKPGTTVILRN 110 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg----------DeTG~I~ltlWde~~---~~i~~Gdvv~I~n 110 (159)
+++.+.|.++|..-.+.+.+. +| ..++...|| |+|--+++++|+.++ ..++.|+.|.|.+
T Consensus 127 ~~N~v~l~G~l~~dpe~r~t~--~G-----~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~~Ae~~~~l~KG~~V~V~G 199 (264)
T 2fxq_A 127 ALNQVILMGNLTRDPDLRYTP--QG-----TAVVRLGLAVNERRRGQEEERTHFLEVQAWRELAEWASELRKGDGLLVIG 199 (264)
T ss_dssp CCEEEEEEEEESSCCCCEECT--TC-----CEEEEEEEEEECCC-------EEEEEEEEEHHHHHHHTTCCTTCEEEEEE
T ss_pred ceEEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCCcCCCCccccEEEEEEEEChHHHHhhhcCCCCEEEEEE
Confidence 456678888887766655432 34 457777765 245579999998533 2789999999998
Q ss_pred eEEc
Q 031443 111 AKID 114 (159)
Q Consensus 111 a~v~ 114 (159)
-...
T Consensus 200 ~l~~ 203 (264)
T 2fxq_A 200 RLVN 203 (264)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8654
No 66
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=56.58 E-value=10 Score=28.36 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=43.1
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe------eC--------ceeEEEEEecCCcC----CCCCCCE
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG------DD--------TGTILFTARNDQVD----LMKPGTT 105 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg------De--------TG~I~ltlWde~~~----~i~~Gdv 105 (159)
+++.|.|.++|..-.+.+.+. .| ..|+...|| |+ |--+++++|+..++ .++.|+.
T Consensus 7 ~mN~V~LiGrL~~dPelr~t~--~G-----~~v~~f~lA~~~~~~d~~~Ge~~e~t~~i~vv~wg~~Ae~~~~~l~KG~~ 79 (158)
T 3tqy_A 7 GVNKVILIGNLGQDPEVRYTP--NG-----NAVANVTLATSTTWRDKQTGELQERTEWHRIAFFNRLAEIVGEYLRKGSK 79 (158)
T ss_dssp CEEEEEEEEEESSSCEEEECT--TC-----CEEEEEEEEEEEEEECTTTCCEEEEEEEEEEEEETHHHHHHHHHCCTTCE
T ss_pred ccCEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCceeccCCCCEeeeeEEEEEEEEhHHHHHHHhhcCCCCE
Confidence 456678888887766655432 23 346665553 22 34579999986553 3799999
Q ss_pred EEEeceEEc
Q 031443 106 VILRNAKID 114 (159)
Q Consensus 106 v~I~na~v~ 114 (159)
|.|.+-...
T Consensus 80 V~VeG~L~~ 88 (158)
T 3tqy_A 80 IYIEGSLRT 88 (158)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999988764
No 67
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=54.96 E-value=27 Score=25.60 Aligned_cols=62 Identities=8% Similarity=0.062 Sum_probs=43.7
Q ss_pred CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeC-----ce-------eEEEEEecCCcC----CCCCCCEEEEe
Q 031443 46 NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDD-----TG-------TILFTARNDQVD----LMKPGTTVILR 109 (159)
Q Consensus 46 ~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDe-----TG-------~I~ltlWde~~~----~i~~Gdvv~I~ 109 (159)
+.|.|.+++..-.+.+-++ .| ..|++..||-+ +| -|++++|+..++ .+..|+-|.|.
T Consensus 20 NkViLiGrL~~DPElRyTp--sG-----~~Va~ftLA~~~~~~~~G~~~~~~~~i~vv~wGk~AE~~~~yl~KGs~V~Ve 92 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSP--SG-----IPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQ 92 (134)
T ss_dssp EEEEEEEEEEEEEEEEECT--TC-----CEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTGGGGGGTTCCTTCEEEEE
T ss_pred eEEEEEEEECcCCceEECC--CC-----CEEEEEEEEEeCcCcCCCCEecceEEEEEEEEhHHHHHHHHhcCCCCEEEEE
Confidence 5578888888776665433 34 45777777543 34 289999986554 47899999999
Q ss_pred ceEEc
Q 031443 110 NAKID 114 (159)
Q Consensus 110 na~v~ 114 (159)
+-...
T Consensus 93 GrL~t 97 (134)
T 1v1q_A 93 GFISC 97 (134)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87664
No 68
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=54.61 E-value=16 Score=26.34 Aligned_cols=62 Identities=11% Similarity=-0.034 Sum_probs=41.0
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe------e---------CceeEEEEEecCCcC----CCCCCCE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG------D---------DTGTILFTARNDQVD----LMKPGTT 105 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg------D---------eTG~I~ltlWde~~~----~i~~Gdv 105 (159)
.+.+.|.+.+-.-.+.+.+. + +.|+...|| | +|--+++++|+..++ .++.|+.
T Consensus 15 ~N~V~LiGrL~~dPelr~t~--~------G~v~~fslAv~~~~~d~~~Ge~~d~~t~w~~v~~wg~~Ae~~~~~l~KG~~ 86 (128)
T 4dam_A 15 EIMICAVGNVATTPVFRDLA--N------GPSVRFRLAVTARYWDREKNAWTDGHTNFFTVWANRQLATNASGSLAVGDP 86 (128)
T ss_dssp CCEEEEEEEECSCCEEEEET--T------EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEHHHHHHHHHHCCTTCE
T ss_pred eeEEEEEEEECCCCEEEEcC--C------CCEEEEEEEEcCceecccCCceecCCcEEEEEEEEcHHHHHHHHhcCCCCE
Confidence 34467777776655544332 1 256666664 1 455789999986553 3799999
Q ss_pred EEEeceEEc
Q 031443 106 VILRNAKID 114 (159)
Q Consensus 106 v~I~na~v~ 114 (159)
|.|.+-...
T Consensus 87 V~VeGrL~~ 95 (128)
T 4dam_A 87 VVVQGRLKV 95 (128)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999987653
No 69
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=54.43 E-value=14 Score=29.81 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=26.6
Q ss_pred eEEEEEecCCcCCCCCCCEEEEeceEEceeC
Q 031443 87 TILFTARNDQVDLMKPGTTVILRNAKIDMFK 117 (159)
Q Consensus 87 ~I~ltlWde~~~~i~~Gdvv~I~na~v~~~~ 117 (159)
++.+.|-++..+.++|||.|.|.|-|...++
T Consensus 199 si~V~l~~dLvd~~~PGDrV~vtGI~~~~~~ 229 (279)
T 1ltl_A 199 QITVVLEDDLVDTLTPGDIVRVTGTLRTVRD 229 (279)
T ss_dssp EEEEEEEGGGTTCCCTTCEEEEEEEEEEEEE
T ss_pred EEEEEEcccccCccCCCCEEEEEEEEEEeeC
Confidence 5677777899999999999999999987663
No 70
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=54.28 E-value=5.6 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEEeeCceeEEEEEecCCcC
Q 031443 74 TRIAECLVGDDTGTILFTARNDQVD 98 (159)
Q Consensus 74 ~~V~~~lVgDeTG~I~ltlWde~~~ 98 (159)
..+.++.|+|.||.+.++++++.+.
T Consensus 74 RYil~~~i~D~TG~~wvt~F~e~ae 98 (172)
T 3u50_C 74 HLMLRAFVQDSTGTIPVMIFDQQSS 98 (172)
T ss_dssp EECEEEEEEETTEEEEEEECHHHHH
T ss_pred EEEEEEEEEeCCCCEEEEEEhHHHH
Confidence 4568899999999999999986543
No 71
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=54.17 E-value=20 Score=28.12 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=42.0
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee---------------CceeEEEEEecCCcC----CCCCCCE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD---------------DTGTILFTARNDQVD----LMKPGTT 105 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD---------------eTG~I~ltlWde~~~----~i~~Gdv 105 (159)
++.|.|.++|..-.+.+.+. +| ..|++..|+= +|=-+++++|..+++ .+++|+.
T Consensus 4 ~N~V~LiGrL~~DPElR~T~--~G-----~~Va~FsLAvn~R~~d~~~Ge~~d~~T~wi~VvawgklAE~v~~~L~KG~~ 76 (199)
T 3eiv_A 4 ETVITVVGNLVDDPELRFTP--SG-----AAVAKFRVASTPRTFDRQTNEWKDGESLFLTCSVWRQAAENVAESLQRGMR 76 (199)
T ss_dssp CCEEEEEEEESSCCEEEECT--TC-----CEEEEEEEEECC-----------CCCCEEEEEEEETHHHHHHHHHCCTTCE
T ss_pred ccEEEEEEEECCCCeEEECC--CC-----CEEEEEEEEEcCcccccCCCcEecCccEEEEEEEEhHHHHHHHHhcCCCCE
Confidence 44567777777755554432 23 3566655542 355699999986553 3799999
Q ss_pred EEEeceEEc
Q 031443 106 VILRNAKID 114 (159)
Q Consensus 106 v~I~na~v~ 114 (159)
|.|.+-+..
T Consensus 77 V~VeGrL~~ 85 (199)
T 3eiv_A 77 VIVQGRLKQ 85 (199)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEe
Confidence 999987763
No 72
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=54.07 E-value=40 Score=31.58 Aligned_cols=82 Identities=11% Similarity=0.098 Sum_probs=59.4
Q ss_pred CCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCce-eEEEEEecCCcCCCCCCCEEEEeceEEcee--C
Q 031443 41 LKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTG-TILFTARNDQVDLMKPGTTVILRNAKIDMF--K 117 (159)
Q Consensus 41 L~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG-~I~ltlWde~~~~i~~Gdvv~I~na~v~~~--~ 117 (159)
..|.-.-|++.+.|+.+.... +.---+.++|+.. -+-+.+|....+.+++|..|-+.|-..+-. .
T Consensus 607 f~p~~~EvDivG~Vv~v~~~~------------~~~~~vylsD~~~nll~Ikf~~~l~eD~~~~~~va~sNL~~r~~~~~ 674 (738)
T 1miu_A 607 FQPPCSEVDVVGVVVSVVKPI------------GLAPLVYLSDECLNLLVVKFGIDLNEDIKPRVLIAASNLQCQPESTS 674 (738)
T ss_dssp CCTTTTEEEEEEEEEEEECCT------------TSCCEEEEECSSSCEEEEEESSCCCSCCCSSCEEEEEEEECCSCCSS
T ss_pred ccCCCCceeEEEEEEEEcccC------------cccceEEEEcCCCcEEEEEEecCchhhCccccEEEEeeeEeeccccc
Confidence 345566799999999997632 1122455789873 455667887555599999999999987643 3
Q ss_pred CeEEEEeCCceeEEEcC
Q 031443 118 GSMRIAVDKWGRIEATE 134 (159)
Q Consensus 118 G~~~L~vgk~g~I~~~~ 134 (159)
+-+.|..+.++.+...|
T Consensus 675 ~ip~~~a~~~t~fs~~p 691 (738)
T 1miu_A 675 GVPTLFAGHFSIFSASP 691 (738)
T ss_dssp SCCCEEECTTCEEESSC
T ss_pred cCceEEeccceEEecCc
Confidence 66888888888887765
No 73
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=54.05 E-value=12 Score=30.94 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=43.4
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe------e-------CceeEEEEEecCCc---CCCCCCCEEE
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG------D-------DTGTILFTARNDQV---DLMKPGTTVI 107 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg------D-------eTG~I~ltlWde~~---~~i~~Gdvv~ 107 (159)
.++.+.|.++|..-.+.+.+. .| ..|+...|+ | +|--+++++|+..+ ..++.|+.|.
T Consensus 128 mmN~V~L~GrL~~dPelr~t~--~G-----~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~~Ae~~~~l~KG~~V~ 200 (301)
T 1se8_A 128 AMNEVLVLGNVTRDPEIRYTP--AG-----DAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRDLAENMKELRKGDPVM 200 (301)
T ss_dssp CEEEEEEEEEECSCCEEEECT--TC-----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTCCTTCEEE
T ss_pred ceeEEEEEEEECcCCEEEECC--CC-----CEEEEEEEEEcCceEcCCCCcccccEEEEEEECCHHHHHHHhcCCCCEEE
Confidence 355577888887766655432 33 457776665 2 23369999998533 2289999999
Q ss_pred EeceEEc
Q 031443 108 LRNAKID 114 (159)
Q Consensus 108 I~na~v~ 114 (159)
|.+-...
T Consensus 201 V~GrL~~ 207 (301)
T 1se8_A 201 IMGRLVN 207 (301)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9988764
No 74
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=53.31 E-value=5.6 Score=30.53 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=41.0
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe------e--------CceeEEEEEecCCcC----CCCCCCEE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG------D--------DTGTILFTARNDQVD----LMKPGTTV 106 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg------D--------eTG~I~ltlWde~~~----~i~~Gdvv 106 (159)
++.|.|.++|..-.+.+.+. .| ..|++..|+ | +|=-+++++|+..++ .++.|+.|
T Consensus 6 ~N~V~LiGrL~~dPelr~t~--~G-----~~v~~f~LAv~~~~~d~~~Ge~~~~t~~i~vv~wg~~Ae~~~~~l~KG~~V 78 (178)
T 1eqq_A 6 VNKVILVGNLGQDPEVRYMP--NG-----GAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQV 78 (178)
T ss_dssp EEEEEEEEEESSSCCCCEET--TT-----EECCCCEEEEEECCCCSSSSSCCCEEEEEEEEECHHHHHHHHHHCCTTCEE
T ss_pred eeEEEEEEEECCCCEEEECC--CC-----CEEEEEEEEEcCCeecCCCCceecccEEEEEEEccHHHHHHHHhcCCCCEE
Confidence 34567777777655554432 23 345555554 1 244689999986543 47999999
Q ss_pred EEeceEEc
Q 031443 107 ILRNAKID 114 (159)
Q Consensus 107 ~I~na~v~ 114 (159)
.|.+-...
T Consensus 79 ~VeGrL~~ 86 (178)
T 1eqq_A 79 YIEGQLRT 86 (178)
T ss_dssp EECCEEEE
T ss_pred EEEEEEEe
Confidence 99988764
No 75
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=52.77 E-value=29 Score=25.78 Aligned_cols=62 Identities=10% Similarity=-0.025 Sum_probs=43.6
Q ss_pred CCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe--------------eCceeEEEEEecCC-cC----CCCCCC
Q 031443 44 GTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG--------------DDTGTILFTARNDQ-VD----LMKPGT 104 (159)
Q Consensus 44 ~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg--------------DeTG~I~ltlWde~-~~----~i~~Gd 104 (159)
+++.|.|.++|-.-.+ +.+ .| ..|+...|| ++|--+++++|+.. ++ .++.|+
T Consensus 5 ~~NkV~LiGrLg~DPe-r~t---~G-----~~va~FslAv~~~~~~~~Ge~~~~~t~w~~vv~wgk~lAe~~~~yl~KG~ 75 (148)
T 3k7u_C 5 SVNSVTLVGVVHDIQS-GFV---YE-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKVKEGN 75 (148)
T ss_dssp CCCCEEEEEEEEEEEE-EES---SS-----SEEEEEEEEEECC-----------CEEEEEEEEESHHHHHHHHHHCCTTC
T ss_pred cCcEEEEEEEeccCCE-eee---CC-----cEEEEEEEEECCceecCCCCEEccccEEEEEEEECcHHHHHHHhhCCCCC
Confidence 4567888888887655 432 33 456665554 34667999999976 53 479999
Q ss_pred EEEEeceEEc
Q 031443 105 TVILRNAKID 114 (159)
Q Consensus 105 vv~I~na~v~ 114 (159)
.|.|.+-...
T Consensus 76 ~V~VeGrL~~ 85 (148)
T 3k7u_C 76 VVCVNGRLRL 85 (148)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEe
Confidence 9999987763
No 76
>3ebe_A Protein MCM10 homolog; OB-fold, zinc finger, CCCH, DNA replication, metal-binding, zinc-finger, replication; 2.30A {Xenopus laevis} PDB: 3h15_A
Probab=51.11 E-value=23 Score=27.70 Aligned_cols=81 Identities=16% Similarity=-0.015 Sum_probs=52.2
Q ss_pred CceEEEEEEecCcccccccCCCCCCCcceEEEEEE---eeCceeEEEEEecCCc---CCCCCCCEEEEeceEEceeC---
Q 031443 47 GHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLV---GDDTGTILFTARNDQV---DLMKPGTTVILRNAKIDMFK--- 117 (159)
Q Consensus 47 ~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lV---gDeTG~I~ltlWde~~---~~i~~Gdvv~I~na~v~~~~--- 117 (159)
+.-+.+.|++..+++... .|. ...-..+ .|....|.|-|+++.. -.+.+|++|-|-|+..-..+
T Consensus 57 dwv~~GVV~~Ks~pk~~~--~gk-----~y~~w~l~DL~~~~~~V~lfLFg~a~~~~~k~~~G~ViaiLNP~i~~~~~~~ 129 (200)
T 3ebe_A 57 DWVTFGVIVKKITPQSSN--NGK-----TFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGT 129 (200)
T ss_dssp CEEEEEEEEEEECC--------------CCEEEEEECSSSTTCCEEEEECHHHHHHHTTCCTTEEEEEESCEECCCCTTC
T ss_pred CEEEEEEEEecCCccCcC--CCC-----eEEEEEEEecCCCCcEEEEEEechHHHHhcCcCCceEEEEECCEEccCCCCC
Confidence 455778899988876532 232 2334444 4555679999998532 24799999999999874332
Q ss_pred CeEEEEeCCceeEEEcC
Q 031443 118 GSMRIAVDKWGRIEATE 134 (159)
Q Consensus 118 G~~~L~vgk~g~I~~~~ 134 (159)
+...|.++....|-.++
T Consensus 130 ~~~sLsv~~~~~Il~IG 146 (200)
T 3ebe_A 130 DEVCLSVDNPQKVLLMG 146 (200)
T ss_dssp CCEEEECSSGGGEEEEE
T ss_pred cceEEEECCcccEEEEE
Confidence 36788888777776665
No 77
>1miu_A BRCA2, breast cancer type 2 susceptibility protein; tumor suppressor, breast cancer susceptibility, DNA-binding; 3.10A {Mus musculus} SCOP: a.170.1.1 a.171.1.1 b.40.4.3 b.40.4.3 b.40.4.3 PDB: 1iyj_B 1mje_A
Probab=49.26 E-value=13 Score=34.76 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=40.4
Q ss_pred eEEEEEecC---CcCCCCCCCEEEEeceEEceeC-----CeEEEEeCCceeEEEcC
Q 031443 87 TILFTARND---QVDLMKPGTTVILRNAKIDMFK-----GSMRIAVDKWGRIEATE 134 (159)
Q Consensus 87 ~I~ltlWde---~~~~i~~Gdvv~I~na~v~~~~-----G~~~L~vgk~g~I~~~~ 134 (159)
.+.|++|+. ....++||..++|.|-...-.+ +.++|+.++.+++.+++
T Consensus 526 ~~iLSIW~P~edl~s~L~EG~~y~iy~L~~s~s~~~~~~~~lqLtAtk~T~~~~L~ 581 (738)
T 1miu_A 526 SALLSIWRPSSDLSSLLTEGKRYRIYHLAVSKSKSKFERPSIQLTATKRTQYQQLP 581 (738)
T ss_dssp CEEEEEESCCHHHHHHCCSSCEEEEEEECCCCCCCSSSCCSCEEEEEEEEEEEEEC
T ss_pred eEEEEEeCCChHHHhhccCCcEEEEEEeeccCCCccCccceEEEeecccceeEECC
Confidence 789999984 3345899999999999887665 46899999999999986
No 78
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=47.79 E-value=35 Score=22.48 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCcCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCCCcEEE
Q 031443 95 DQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEPAKFVV 140 (159)
Q Consensus 95 e~~~~i~~Gdvv~I~na~v~~~~G~~~L~vgk~g~I~~~~~~~~~v 140 (159)
+....+++||.|++.+| .|.| ..|-|.++++....+
T Consensus 13 ~LrK~F~~GDHVkVi~G---~~~g-------etGlVV~v~~d~v~v 48 (69)
T 2do3_A 13 ELRKYFKMGDHVKVIAG---RFEG-------DTGLIVRVEENFVIL 48 (69)
T ss_dssp CCCSSCCTTCEEEESSS---TTTT-------CEEEEEEECSSCEEE
T ss_pred HceeeccCCCeEEEecc---EEcC-------ceEEEEEEeCCEEEE
Confidence 34467899999999998 4444 345555554444333
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=45.81 E-value=55 Score=27.33 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=46.4
Q ss_pred eeecccCCCCCC-CceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeE-EEEEecCCcC-CCCCCCEEEEece
Q 031443 35 FTKVDQLKPGTN-GHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTI-LFTARNDQVD-LMKPGTTVILRNA 111 (159)
Q Consensus 35 ~~kI~dL~P~~~-~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I-~ltlWde~~~-~i~~Gdvv~I~na 111 (159)
...+.+|.|+.+ +.-+.++|+......+ ..-...++.|..|.. .+++|+-.-+ .+..||+|.|-..
T Consensus 355 ~~~l~~l~~~~~~~~~~~~kv~~~~~~~~-----------~~p~~~~~~d~~~~~~~~~~y~~~~~~~~~~gd~~~~~~p 423 (474)
T 4abn_A 355 LKPLSTLQPGVNSGTVVLGKVVFSLTTEE-----------KVPFTFGLVDSDGPCYAVMVYNVVQSWGVLIGDSVAIPEP 423 (474)
T ss_dssp ECCGGGCCSEECTTEEEEEEEEEEECCTT-----------CCSEEEEEESSSSCCEEEEECSBCTTCCCCTTCEEEEESC
T ss_pred eccHhhcccccCCCeEEEEEEEEEecCCC-----------CCceEEEEEcCCCCEEEEEEecccCCCceecCceEeecCC
Confidence 346788998764 4556777877554321 112456667776665 5778874333 4899999999998
Q ss_pred EEce
Q 031443 112 KIDM 115 (159)
Q Consensus 112 ~v~~ 115 (159)
+++.
T Consensus 424 ~~~~ 427 (474)
T 4abn_A 424 NLRH 427 (474)
T ss_dssp EEEE
T ss_pred cceE
Confidence 8864
No 80
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=45.14 E-value=28 Score=27.71 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=41.3
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe------eCce-------eEEEEEecCCc----CCCCCCCEEE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG------DDTG-------TILFTARNDQV----DLMKPGTTVI 107 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg------DeTG-------~I~ltlWde~~----~~i~~Gdvv~ 107 (159)
++.+.|.++|..-.+.+.+. .| ..|+...|| |+.| -+++++|+..+ ..++.|+.|.
T Consensus 5 ~N~v~L~G~l~~dpelr~t~--~G-----~~v~~f~lA~~~~~~~~~G~~~~~t~~~~v~~~g~~Ae~~~~~l~KG~~V~ 77 (264)
T 2fxq_A 5 LNQVFLIGTLTARPDMRYTP--GG-----LAILDLNLAGQDAFTDESGQEREVPWYHRVRLLGRQAEMWGDLLEKGQLIF 77 (264)
T ss_dssp EEEEEEEEEESSCCCCEECT--TC-----CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETHHHHHHTTTCCTTCEEE
T ss_pred eeEEEEEEEeccCCeEEECC--CC-----CEEEEEEEEECCcEECCCCCEecccEEEEEEEEchHHHHHHHhCCCCCEEE
Confidence 45577888877765554432 23 456666664 2233 48999998543 3579999999
Q ss_pred EeceEE
Q 031443 108 LRNAKI 113 (159)
Q Consensus 108 I~na~v 113 (159)
|.+-..
T Consensus 78 V~G~L~ 83 (264)
T 2fxq_A 78 VEGRLE 83 (264)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 998765
No 81
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=44.88 E-value=16 Score=27.68 Aligned_cols=83 Identities=11% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEe--------------eCceeEEEEEecC-CcCC----CCCCCE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVG--------------DDTGTILFTARND-QVDL----MKPGTT 105 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVg--------------DeTG~I~ltlWde-~~~~----i~~Gdv 105 (159)
++.|.|.++|..-.+.+.+. .| ..|+...|| |+|--+++++|+. .++. ++.|+.
T Consensus 23 mNkV~LiGrL~~DPelr~t~--~G-----~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg~~lAe~~~~~l~KG~~ 95 (169)
T 3lgj_A 23 LNKVMLIGYLGDDPESKTMT--SG-----AEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFNPHFAKIALQYLHKGSK 95 (169)
T ss_dssp EEEEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEC------------CEEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred eeEEEEEEEECCCCeEEECC--CC-----CEEEEEEEEEcCceecccCCccccccEEEEEEEeCHHHHHHHHHhCCCCCE
Confidence 55678888887765554432 23 345555543 2455789999997 6543 799999
Q ss_pred EEEeceEEc-eeC---C----eEEEEeCCc-eeEEEcC
Q 031443 106 VILRNAKID-MFK---G----SMRIAVDKW-GRIEATE 134 (159)
Q Consensus 106 v~I~na~v~-~~~---G----~~~L~vgk~-g~I~~~~ 134 (159)
|.|.+-... .|. | .++|.+... ..|+.++
T Consensus 96 V~VeGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~ 133 (169)
T 3lgj_A 96 VYIEGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLD 133 (169)
T ss_dssp EEEEEEEEEECC--------CEEEEEECTTCCEEEEEC
T ss_pred EEEEEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEcc
Confidence 999988763 342 3 455665543 3555554
No 82
>3u58_A Tetrahymena TEB1 AB; tetrahymena, telomerase, TEB1, processivity factor, DNA BIND protein-DNA complex; HET: DNA; 2.61A {Tetrahymena thermophila}
Probab=42.57 E-value=1.1e+02 Score=23.24 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=57.2
Q ss_pred ecccCCCCCCCc--eEEEEEEecCcccccccCCCCCCCcceEEEEEEeeC-ceeEEEEEecC--Cc-CCCCCCCEEEEec
Q 031443 37 KVDQLKPGTNGH--NLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDD-TGTILFTARND--QV-DLMKPGTTVILRN 110 (159)
Q Consensus 37 kI~dL~P~~~~v--nv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDe-TG~I~ltlWde--~~-~~i~~Gdvv~I~n 110 (159)
-|..|.-|.+.+ .+.++|+-... +|....- .+..-+..-|. .-.|.|++|.. +. ..++.|.-+.+.+
T Consensus 13 lisqlqvgknrfsfkfegrvvykss--tfqnqqd-----skyffitaqdannqeinlsfwqkvdqsyqtlkvgqyyyfig 85 (213)
T 3u58_A 13 LISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQD-----SKYFFITAQDANNQEINLSFWQKVDQSYQTLKVGQYYYFIG 85 (213)
T ss_dssp CGGGCCTTSCTTSEEEEEEEEEECC--CBCCSTT-----CCBEEEEEECTTSCEEEEEECSSHHHHHHHCCTTCEEEEES
T ss_pred hhhhhhhccceeeEEeeeEEEEeec--ccccccc-----ccEEEEEeecCCCceechHHHHHhhhhhheeeeceEEEEEc
Confidence 377888776665 55667765543 4443221 33333444444 45899999963 21 3489999999999
Q ss_pred eEEceeCCeEEEEeCCceeE
Q 031443 111 AKIDMFKGSMRIAVDKWGRI 130 (159)
Q Consensus 111 a~v~~~~G~~~L~vgk~g~I 130 (159)
+-++-|++.++|... +|..
T Consensus 86 gevkqfknnlelkfk-fgdy 104 (213)
T 3u58_A 86 GEVKQFKNNLELKFK-FGDY 104 (213)
T ss_dssp CEEEECSSSEEEEEC-SSCC
T ss_pred ccHhhhccceEEEEe-cCce
Confidence 999999999998763 4443
No 83
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=37.34 E-value=28 Score=27.20 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee--------------CceeEEEEEecC-Cc----CCCCCCCE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD--------------DTGTILFTARND-QV----DLMKPGTT 105 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD--------------eTG~I~ltlWde-~~----~~i~~Gdv 105 (159)
++.|.|.++|..-.+.+.+. .| ..|+...||= +|--+++++|.. .+ ..++.|+.
T Consensus 26 mNkV~LiGrLg~DPElR~t~--~G-----~~Va~FsLAvnr~~kd~~~Ge~~e~Tdwi~Vvawgk~lAe~~~~yL~KGs~ 98 (193)
T 3pgz_A 26 LNKVILIGNLGADPEIRRLN--SG-----DQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLVKVVEQYLKKGSK 98 (193)
T ss_dssp EEEEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEEEECCC-----EEEEEEEEEEECCHHHHHHHHHHCCTTCE
T ss_pred cCEEEEEEEECCCCeEEECC--CC-----CEEEEEEEEEcCceeccCCCceeeeeEEEEEEEECHHHHHHHHhhcCCCCE
Confidence 45577777777655554432 23 3466655541 244599999985 44 33789999
Q ss_pred EEEeceEEc-eeC---C----eEEEEeCCce-eEEEcC
Q 031443 106 VILRNAKID-MFK---G----SMRIAVDKWG-RIEATE 134 (159)
Q Consensus 106 v~I~na~v~-~~~---G----~~~L~vgk~g-~I~~~~ 134 (159)
|.|.+-... .|. | .++|.+.+.+ .|+.++
T Consensus 99 V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~ 136 (193)
T 3pgz_A 99 IYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD 136 (193)
T ss_dssp EEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC
T ss_pred EEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECc
Confidence 999987763 342 3 4556666543 555553
No 84
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=36.49 E-value=68 Score=28.31 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=29.9
Q ss_pred EEEEeeCceeEEEEEecCCcCCCCCCCEEEEeceEEc
Q 031443 78 ECLVGDDTGTILFTARNDQVDLMKPGTTVILRNAKID 114 (159)
Q Consensus 78 ~~lVgDeTG~I~ltlWde~~~~i~~Gdvv~I~na~v~ 114 (159)
.+.+-||||+|+|.. .-+...+-.|-+|-+.+....
T Consensus 139 ~l~LEDesGRv~L~g-~~~~~~lVTG~VvaV~G~~~~ 174 (476)
T 3e0j_A 139 ELVLEDELQRIKLKG-TIDVSKLVTGTVLAVFGSVRD 174 (476)
T ss_dssp EEEEECSSCEEEEEE-SCCTTTCCTTCEEEEEEEECT
T ss_pred eEEEECCCCEEEEEE-EcccccccCCcEEEEEEEEcC
Confidence 589999999999997 435566889999999987654
No 85
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=34.96 E-value=92 Score=21.81 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=25.8
Q ss_pred ceEEEEEEeeCceeEEEEEecCCcCCCCCCCEEEEe
Q 031443 74 TRIAECLVGDDTGTILFTARNDQVDLMKPGTTVILR 109 (159)
Q Consensus 74 ~~V~~~lVgDeTG~I~ltlWde~~~~i~~Gdvv~I~ 109 (159)
..-+.++-|..+|.|.|. +..+-.+.+||.|.|.
T Consensus 29 RfeTYvI~GerSG~I~lN--GAAArl~~~GD~vII~ 62 (97)
T 1uhe_A 29 RFSTYVILGKKRGEICVN--GAAARKVAIGDVVIIL 62 (97)
T ss_dssp EEEEECEEECSTTCEEEE--GGGGGGCCTTCEEEEE
T ss_pred eEEEEEEeeccCCeEEEc--hHHHccCCCCCEEEEE
Confidence 344667778889999885 5555668999998875
No 86
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=31.66 E-value=1.1e+02 Score=21.65 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=24.0
Q ss_pred eEEEEEEeeCceeEEEEEecCCcCCCCCCCEEEEe
Q 031443 75 RIAECLVGDDTGTILFTARNDQVDLMKPGTTVILR 109 (159)
Q Consensus 75 ~V~~~lVgDeTG~I~ltlWde~~~~i~~Gdvv~I~ 109 (159)
.-+.++-|..+|.|.|. +..+-.+.+||.|.|.
T Consensus 31 f~TYvI~GeGSG~I~lN--GAAArl~~~GD~vII~ 63 (102)
T 3plx_B 31 FETYTIATQEEGVVCLN--GAAARLAEVGDKVIIM 63 (102)
T ss_dssp EEEECEEESSTTCEEEE--GGGGGGCCTTCEEEEE
T ss_pred EEEEEEEcCCCCEEEeC--cHHHhccCCCCEEEEE
Confidence 34556667678888775 5566668999999886
No 87
>3u4v_A Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 1.80A {Tetrahymena thermophila}
Probab=31.08 E-value=1.3e+02 Score=20.85 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=55.9
Q ss_pred ecccCCCCCCCc--eEEEEEEecCcccccccCCCCCCCcceEEEEEEeeC-ceeEEEEEecC--C-cCCCCCCCEEEEec
Q 031443 37 KVDQLKPGTNGH--NLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDD-TGTILFTARND--Q-VDLMKPGTTVILRN 110 (159)
Q Consensus 37 kI~dL~P~~~~v--nv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDe-TG~I~ltlWde--~-~~~i~~Gdvv~I~n 110 (159)
-|..|.-|.+.+ .+.++|+-... +|.... ..+..-+..-|. .-.|.|++|.. + -..++.|.-+.+.+
T Consensus 17 lisqlqvgknrfsfkfegrvvykss--tfqnqq-----dskyffitaqdannqeinmsfwqkvdqsyqtlkvgqyyyfig 89 (117)
T 3u4v_A 17 LISQLQVGKNRFSFKFEGRVVYKSS--TFQNQQ-----DSKYFFITAQDANNQEINMSFWQKVDQSYQTLKVGQYYYFIG 89 (117)
T ss_dssp CGGGCCTTCCTTSCEEEEEEEEECC--CEECTT-----SCEEEEEEEECTTSCEEEEEEESSTHHHHTTCCTTCEEEEES
T ss_pred ehhhhhcccceeeEEeeeEEEEeec--cccccc-----cccEEEEEeecCCCceechHHHHHhhhhhheEeeceEEEEEc
Confidence 367777776554 56777876554 444321 134444444454 45899999963 2 24589999999999
Q ss_pred eEEceeCCeEEEEe
Q 031443 111 AKIDMFKGSMRIAV 124 (159)
Q Consensus 111 a~v~~~~G~~~L~v 124 (159)
+-++-|++.++|..
T Consensus 90 gevkqfknnlelkf 103 (117)
T 3u4v_A 90 GEVKQFKNNLELKF 103 (117)
T ss_dssp CEEEEETTEEEEEE
T ss_pred cchhhhccceEEEE
Confidence 99999999999865
No 88
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=31.03 E-value=32 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=24.7
Q ss_pred cceEEEEEEeeCceeEEEE--EecCCc----CCCCCCCEEEEec
Q 031443 73 QTRIAECLVGDDTGTILFT--ARNDQV----DLMKPGTTVILRN 110 (159)
Q Consensus 73 ~~~V~~~lVgDeTG~I~lt--lWde~~----~~i~~Gdvv~I~n 110 (159)
.+.+.+.+ .+.+|.|++. .|.... ..+.+|+.|+|..
T Consensus 28 ~~~v~~~i-~~~~G~V~~~G~~W~A~s~~~~~~i~~G~~V~Vv~ 70 (82)
T 3cp0_A 28 RAEVLEDV-GATSGQVRLDGSIWSARSMDPTHTFAEGEIVSVID 70 (82)
T ss_dssp EEEEEECB-CSSCCEEEETTEEEEEEESSTTCCBCTTCEEEEEE
T ss_pred EEEEEEEe-CCCCEEEEECCEEEEEEECCCCCccCCCCEEEEEE
Confidence 35555533 3457888884 787433 4589999999875
No 89
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=30.68 E-value=1.7e+02 Score=21.79 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=46.5
Q ss_pred EEEEEEeeCc--eeEEEEEecCCcCCCCCCCEEEEeceEEceeCCeEEEEeCCceeEEEcCC---CcEEEccCCCccccc
Q 031443 76 IAECLVGDDT--GTILFTARNDQVDLMKPGTTVILRNAKIDMFKGSMRIAVDKWGRIEATEP---AKFVVKEDNNLSLVE 150 (159)
Q Consensus 76 V~~~lVgDeT--G~I~ltlWde~~~~i~~Gdvv~I~na~v~~~~G~~~L~vgk~g~I~~~~~---~~~~vne~~N~S~ie 150 (159)
..-++-|+.. +.+.|...... ..+++||.|.=.+ +-..|- .=|-||+=..|+..+. ....++-..+++.++
T Consensus 84 ~~Gil~G~~~~~~~l~l~~i~~~-~~i~~GD~vvTSG-l~g~fP--~GipVG~V~~v~~~~~~~~~~i~v~p~ad~~~l~ 159 (172)
T 2qf4_A 84 IYGIIIGYDKENDVLKISQLNSN-SDISAGDKVTTGG-LGNFNV--ADIPVGEVVATTHSTDYLTREVTVKLSADTHNVD 159 (172)
T ss_dssp EEEEEEEEETTTTEEEEECCSCC-CCCCTTCEEEEEC-CSSSCC--EEEEEEEEEEEESTTCSSCCEEEEEESCCCTTCC
T ss_pred EEEEEEccCCCCCeEEEEECCCC-CCCCCCCEEEECC-CCCcCC--CCCEEEEEEEEecCCCCcEEEEEEEECCCcccCe
Confidence 4445556655 77777766543 4589999887554 323332 1255555444444321 135678889999999
Q ss_pred eeeeee
Q 031443 151 YELVNV 156 (159)
Q Consensus 151 ye~v~~ 156 (159)
|=+|..
T Consensus 160 ~V~Vi~ 165 (172)
T 2qf4_A 160 VIELVG 165 (172)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 877643
No 90
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=30.45 E-value=22 Score=23.45 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=18.0
Q ss_pred eCceeEEEE------EecCC---cCCCCCCCEEEEec
Q 031443 83 DDTGTILFT------ARNDQ---VDLMKPGTTVILRN 110 (159)
Q Consensus 83 DeTG~I~lt------lWde~---~~~i~~Gdvv~I~n 110 (159)
+.+|.|+|. .|... ...|.+|+.|+|..
T Consensus 34 ~~~G~V~i~g~gg~~~W~A~s~~~~~i~~G~~V~Vv~ 70 (84)
T 2k14_A 34 DGFGEVVIEGIGGTISKSAVSFDNQQISYGTTVLVVD 70 (84)
T ss_dssp TCEEEEEESCTTSCCCEEEEETTSCCBCSSCEEEEEE
T ss_pred CCcEEEEEeeECccEEEEEEeCCCCccCCCCEEEEEE
Confidence 345666662 46532 23489999999875
No 91
>3u5c_c S33, YS27, 40S ribosomal protein S28-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Y 3o30_R 3o2z_R 3u5g_c 3iz6_Y
Probab=28.54 E-value=1e+02 Score=20.20 Aligned_cols=50 Identities=12% Similarity=0.185 Sum_probs=30.5
Q ss_pred EEEEEEecCcccccccCCCCCCCcceEEEE--EEeeCceeEEEEEecCCcCCCCCCCEEEEece
Q 031443 50 LTVNVLKSEPVLPKNRAASPQLRQTRIAEC--LVGDDTGTILFTARNDQVDLMKPGTTVILRNA 111 (159)
Q Consensus 50 v~~kVL~i~~~~~~~R~DG~~~~~~~V~~~--lVgDeTG~I~ltlWde~~~~i~~Gdvv~I~na 111 (159)
..++|+++-- |. |+ .|.+.++ -+-|+.|.+.+--+. .-+.+||++.|...
T Consensus 8 ~~A~VikVlG-----Rt-Gs---~G~~tQVrv~~l~d~~r~i~RnVk---GPVR~GDIl~L~Et 59 (67)
T 3u5c_c 8 TLAKVIKVLG-----RT-GS---RGGVTQVRVEFLEDTSRTIVRNVK---GPVRENDILVLMES 59 (67)
T ss_dssp EEEEEEEEEE-----EE-SS---SCCEEEEEEEESSSCSCEEEEECS---SCCCTTCEEEESSS
T ss_pred EEEEEEEEec-----CC-cC---cccEEEEEEEEecCCCcEEEeccc---CCcccCCEEEEehh
Confidence 4567776532 21 33 3555553 344778887665554 34799999998753
No 92
>3k81_C MP18 RNA editing complex protein; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Trypanosoma brucei}
Probab=27.33 E-value=53 Score=24.96 Aligned_cols=65 Identities=9% Similarity=0.033 Sum_probs=44.0
Q ss_pred cCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee--------------CceeEEEEEecCC-cC----CC
Q 031443 40 QLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD--------------DTGTILFTARNDQ-VD----LM 100 (159)
Q Consensus 40 dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD--------------eTG~I~ltlWde~-~~----~i 100 (159)
-+..+++.|.|.+.+-.-.+.+.+. ..|++.-||= +|--+++++|+.. ++ .+
T Consensus 17 r~a~smNkViLiGrLg~DPElR~t~---------~~Va~fsLAt~~r~~~~~~ge~~~~Tdw~~Vv~wgk~lAE~~~~yL 87 (164)
T 3k81_C 17 RCCKSVNSVTLVGVVHDIQSGFVYE---------DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFGELFSAEVKQKV 87 (164)
T ss_dssp ---CCEEEEEEEEEEECCCCEESSS---------CEECCEEEEECCC--------CCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred HHhcCCcEEEEEEEeccCCEEEEcC---------ccEEEEEEEEcCceeeCCCCcCccceEEEEEEEECCHHHHHHHhhc
Confidence 3345667788888888766655432 3455555542 3557999999977 53 47
Q ss_pred CCCCEEEEeceEE
Q 031443 101 KPGTTVILRNAKI 113 (159)
Q Consensus 101 ~~Gdvv~I~na~v 113 (159)
+.|+-|.|.+-..
T Consensus 88 ~KGs~V~VeGrL~ 100 (164)
T 3k81_C 88 KEGNVVCVNGRLR 100 (164)
T ss_dssp CTTCEEEECCEEE
T ss_pred CCCCEEEEEEEEE
Confidence 9999999998875
No 93
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=25.26 E-value=2.5e+02 Score=22.14 Aligned_cols=112 Identities=14% Similarity=0.094 Sum_probs=63.0
Q ss_pred cCCCCCCC---ceEEEEEEecCccccc--ccCCCC--------CCCcceEEEEEEeeCc--eeEEEEEecCCcCCCCCCC
Q 031443 40 QLKPGTNG---HNLTVNVLKSEPVLPK--NRAASP--------QLRQTRIAECLVGDDT--GTILFTARNDQVDLMKPGT 104 (159)
Q Consensus 40 dL~P~~~~---vnv~~kVL~i~~~~~~--~R~DG~--------~~~~~~V~~~lVgDeT--G~I~ltlWde~~~~i~~Gd 104 (159)
-|+++|.= --|.++|.++++-... -=.|.. ..+++.+.-++-|+.. |.+.|...... ..|++||
T Consensus 96 GV~~gm~Vi~~~GlVG~V~~V~~~~S~V~litd~~~~s~v~v~v~~s~~~~Gil~G~~~~~~~l~l~~i~~~-~~i~~GD 174 (255)
T 2j5u_A 96 GVKPDMAVTTPSGLIGKVTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYD-MKFKKGQ 174 (255)
T ss_dssp TCCTTCEEEETTEEEEEEEEECSSCEEEEETTCCCTTCCEEEEECSSSCEEEEEEEEETTTTEEEEEEEETT-SCCCTTC
T ss_pred CCCCCCEEEECCccEEEEEEECCCeEEEEEEECCCCCeeEEEEEecCCcEEEEEEccCCCCCcEEEEECCCC-CCCCCCC
Confidence 45565521 1488999988753110 001211 0112235555667765 88888877644 3589999
Q ss_pred EEEEeceEEcee-CCeEEEEeCCceeEEEcCCC---cEEEccCCCccccceeeeee
Q 031443 105 TVILRNAKIDMF-KGSMRIAVDKWGRIEATEPA---KFVVKEDNNLSLVEYELVNV 156 (159)
Q Consensus 105 vv~I~na~v~~~-~G~~~L~vgk~g~I~~~~~~---~~~vne~~N~S~ieye~v~~ 156 (159)
.|.=.+ +-..| .| |-||+=..|+..+.. ...|+-..+++.++|=+|..
T Consensus 175 ~VvTSG-l~gifP~G---ipVG~V~~V~~~~~~~~~~i~v~P~ad~~~l~~V~Vi~ 226 (255)
T 2j5u_A 175 KVVTSG-LGGKFPAG---IFIGTIEKVETDKMGLSQTAFIKPGADMYDLNHVTVLK 226 (255)
T ss_dssp EEEECC-TTSSSCTT---CEEEEEEEEEECTTSSEEEEEEEESSCCSSCCEEEEEE
T ss_pred EEEECC-CCCcCCCC---CEEEEEEEEeeCCCCceEEEEEEECCCcccCeEEEEEe
Confidence 987554 33333 45 344444444444322 24577788999998877654
No 94
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.12 E-value=1.6e+02 Score=20.17 Aligned_cols=75 Identities=19% Similarity=0.145 Sum_probs=44.2
Q ss_pred eecccCCCCCCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEeeCceeEEEEE---ec---CCcCCCCCCCEEEEe
Q 031443 36 TKVDQLKPGTNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGDDTGTILFTA---RN---DQVDLMKPGTTVILR 109 (159)
Q Consensus 36 ~kI~dL~P~~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgDeTG~I~ltl---Wd---e~~~~i~~Gdvv~I~ 109 (159)
..+.++++|+ .+.++|.++.+- +-+.+.-.+...|.+.... |. +..+.++.||.|+++
T Consensus 14 ~~~~~l~~G~---i~~G~V~~v~~f-------------G~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vk 77 (119)
T 1wi5_A 14 LSAEALKPGM---LLTGTVSSLEDH-------------GYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCI 77 (119)
T ss_dssp CCTTTCCTTC---EEEEEEEEECSS-------------EEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEE
T ss_pred ccHhcCCCCC---EEEEEEEEEeCc-------------eEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEE
Confidence 3456777776 489999998653 2333321112223333332 31 233568999999987
Q ss_pred ceEEceeCCeEEEEeCC
Q 031443 110 NAKIDMFKGSMRIAVDK 126 (159)
Q Consensus 110 na~v~~~~G~~~L~vgk 126 (159)
=..+...++++.|++-.
T Consensus 78 V~~vd~~~~~i~Lslk~ 94 (119)
T 1wi5_A 78 VEKVKGNGGVVSLSVGH 94 (119)
T ss_dssp EEECCTTSCEEEEECCC
T ss_pred EEEEeCCCCEEEEEEch
Confidence 66666556777777643
No 95
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=22.29 E-value=74 Score=26.08 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=41.8
Q ss_pred CCCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee------Cce-------eEEEEEecCCc----CC-CCCCCEE
Q 031443 45 TNGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD------DTG-------TILFTARNDQV----DL-MKPGTTV 106 (159)
Q Consensus 45 ~~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD------eTG-------~I~ltlWde~~----~~-i~~Gdvv 106 (159)
++.|.|.++|..-.+.+.+. .| ..|+...||= ++| -+++++|+..+ .. ++.|+.|
T Consensus 5 mN~V~LiGrL~~dPelr~t~--~G-----~~v~~f~LAv~r~~~~~~G~~~~~t~~i~vv~~g~~Ae~~~~~~l~KG~~V 77 (301)
T 1se8_A 5 MNHVYLIGALARDPELRYTG--NG-----MAVFEATVAGEDRVIGNDGRERNLPWYHRVSILGKPAEWQAERNLKGGDAV 77 (301)
T ss_dssp EEEEEEEEEESSCCEEEECT--TS-----CEEEEEEEEEEEEC-------CEEEEEEEEEEESHHHHHHHHTCCCTTCEE
T ss_pred eeEEEEEEEECCCceEEECC--CC-----CEEEEEEEEEcCceECCCCCEecceEEEEEEEEcHHHHHHHhhCCCCCCEE
Confidence 45577788877655554432 23 3566655542 223 58999998644 44 7999999
Q ss_pred EEeceEEc-eeC
Q 031443 107 ILRNAKID-MFK 117 (159)
Q Consensus 107 ~I~na~v~-~~~ 117 (159)
.|.+-... .|.
T Consensus 78 ~VeG~L~~r~~~ 89 (301)
T 1se8_A 78 VVEGTLEYRQWE 89 (301)
T ss_dssp EEEEEEEEEEEC
T ss_pred EEEEEEEeeeEE
Confidence 99987663 343
No 96
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=22.27 E-value=1.3e+02 Score=27.31 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=43.4
Q ss_pred EEEEeeCceeEEEEEecCCc--------CCCCCCCEEEEeceEEc---------eeCCeEEEEeCCceeEEEcCCCcEEE
Q 031443 78 ECLVGDDTGTILFTARNDQV--------DLMKPGTTVILRNAKID---------MFKGSMRIAVDKWGRIEATEPAKFVV 140 (159)
Q Consensus 78 ~~lVgDeTG~I~ltlWde~~--------~~i~~Gdvv~I~na~v~---------~~~G~~~L~vgk~g~I~~~~~~~~~v 140 (159)
=+.+-|.+|.|.+.+=.+.. ..+..|++|.|.+-... .-.|.++|.+.+.--+.+..+.++.+
T Consensus 41 Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~ 120 (617)
T 4ah6_A 41 FLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACKKLPFEI 120 (617)
T ss_dssp EEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCT
T ss_pred EEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCCCCCccc
Confidence 45678999998887754322 24789999999988764 22478999988765555554344443
Q ss_pred c
Q 031443 141 K 141 (159)
Q Consensus 141 n 141 (159)
+
T Consensus 121 ~ 121 (617)
T 4ah6_A 121 K 121 (617)
T ss_dssp T
T ss_pred c
Confidence 3
No 97
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=22.05 E-value=59 Score=28.92 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=26.6
Q ss_pred eEEEEEecCCcCCCCCCCEEEEeceEEceeC
Q 031443 87 TILFTARNDQVDLMKPGTTVILRNAKIDMFK 117 (159)
Q Consensus 87 ~I~ltlWde~~~~i~~Gdvv~I~na~v~~~~ 117 (159)
++.+.|-++..+.+++||.|.|.|.+...+.
T Consensus 206 ~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~ 236 (595)
T 3f9v_A 206 QLEIILEDDLVDSARPGDRVKVTGILDIKQD 236 (595)
T ss_dssp EEEEEEEGGGTTCSCSSCEEEEEEECCCCCS
T ss_pred eEEEEEecccccccccCCEEEEEEEEEeccc
Confidence 4677788899999999999999999987664
No 98
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=21.80 E-value=83 Score=20.07 Aligned_cols=28 Identities=11% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCCCCCCEEEEeceEEceeCCeEEEEeC
Q 031443 98 DLMKPGTTVILRNAKIDMFKGSMRIAVD 125 (159)
Q Consensus 98 ~~i~~Gdvv~I~na~v~~~~G~~~L~vg 125 (159)
+.+++||.|.++=..++..+|++.|++-
T Consensus 44 ~~~~~Gd~V~v~V~~vd~~~~~i~lsl~ 71 (80)
T 2k52_A 44 ENLNVGDEIIVQAIDVRPEKREIDFKYI 71 (80)
T ss_dssp GGCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred eeeCCCCEEEEEEEEEECCCCEEEEEEe
Confidence 3689999999887777777788888764
No 99
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=21.65 E-value=9.8 Score=28.51 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=20.4
Q ss_pred CceeEEEEEec--CCcCCCCCCCEEEEe
Q 031443 84 DTGTILFTARN--DQVDLMKPGTTVILR 109 (159)
Q Consensus 84 eTG~I~ltlWd--e~~~~i~~Gdvv~I~ 109 (159)
.-|||||.-|| +..+.+..|+.|.|.
T Consensus 137 ShGCIrl~~~d~~~L~~~v~~Gt~V~I~ 164 (165)
T 4a1k_A 137 SKGCIRMHNKDVIELASIVPNGTRVTIN 164 (165)
T ss_dssp ESSSEECCHHHHHHHHHHCCTTCEEEEE
T ss_pred cCCCcCCCHHHHHHHHhcCCCCCEEEEE
Confidence 45999999887 344668999999875
No 100
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=20.75 E-value=69 Score=25.93 Aligned_cols=72 Identities=11% Similarity=-0.001 Sum_probs=47.4
Q ss_pred ceeecccCCCC--C---CCceEEEEEEecCcccccccCCCCCCCcceEEEEEEee--------------CceeEEEEEec
Q 031443 34 VFTKVDQLKPG--T---NGHNLTVNVLKSEPVLPKNRAASPQLRQTRIAECLVGD--------------DTGTILFTARN 94 (159)
Q Consensus 34 ~~~kI~dL~P~--~---~~vnv~~kVL~i~~~~~~~R~DG~~~~~~~V~~~lVgD--------------eTG~I~ltlWd 94 (159)
...++.+...+ | +.+.|.+++ .-.+.+.+. | ..|++..||= +|--+++++|+
T Consensus 130 ~~~~v~~~~g~~~M~~lNkV~LiGrL-~DPElR~t~---G-----~~Va~FslAv~~~~~~~~~~e~~~~Tdw~~Vv~wg 200 (257)
T 4dni_A 130 SVLKVKLASGAGHMKSVNSVTLVGVV-HDIQSGFVY---E-----DAVTQFTLTTTSIDTTHPTQEVVVEKDHHTIRCFG 200 (257)
T ss_dssp EEEEGGGSCSSCTTSCEEEEEEEEEE-EEEEEEEET---T-----EEEEEEEEEEEEEECCCTTCSCEEEEEEEEEEEES
T ss_pred cceeeecccccccccccCEEEEEEEc-CCCEEEEeC---C-----cEEEEEEEEECCCccCCCCceEccceEEEEEEEEC
Confidence 34456666543 3 446788888 544444332 4 5688877752 34469999998
Q ss_pred CC--c---CCCCCCCEEEEeceEEc
Q 031443 95 DQ--V---DLMKPGTTVILRNAKID 114 (159)
Q Consensus 95 e~--~---~~i~~Gdvv~I~na~v~ 114 (159)
.. + ..++.|+.|.|.+-...
T Consensus 201 k~~~AEi~~~L~KG~~V~VeGrL~t 225 (257)
T 4dni_A 201 ELFSAEVKQKVKEGNVVCVNGRLRL 225 (257)
T ss_dssp HHHHHHHHHHCCTTCEEEEEEEEEE
T ss_pred CccHHHHHhhCCCCCEEEEEEEEEe
Confidence 76 3 44799999999987653
No 101
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=20.64 E-value=44 Score=23.17 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=19.6
Q ss_pred eeEEEEEecCCcCCCCCCCEEEEeceEE
Q 031443 86 GTILFTARNDQVDLMKPGTTVILRNAKI 113 (159)
Q Consensus 86 G~I~ltlWde~~~~i~~Gdvv~I~na~v 113 (159)
|.+.|++ ++..-.+++||++.|--+..
T Consensus 68 G~~~~~~-~g~~~~l~~GD~v~ip~g~~ 94 (119)
T 3lwc_A 68 GRLSVST-DGETVTAGPGEIVYMPKGET 94 (119)
T ss_dssp EEEEEEE-TTEEEEECTTCEEEECTTCE
T ss_pred CEEEEEE-CCEEEEECCCCEEEECCCCE
Confidence 6777776 44444589999999987654
Done!