BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031444
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CJJ|A Chain A, Crystal Structure Of The Myb Domain Of The Rad
          Transcription Factor From Antirrhinum Majus
          Length = 93

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 3  SAATWSREEDKAFENAIAMHCIXXXXXXXXXXXXXXXIASMVPSRSVEELKQHYQILLED 62
          S   WS +E+KAFE A+A++                 +A  V  R+ EE+K+HY+IL+ED
Sbjct: 7  SGRPWSAKENKAFERALAVY-------DKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59

Query: 63 VNAIEAGNIPLPNY 76
          +  IE+G +P PNY
Sbjct: 60 IKYIESGKVPFPNY 73


>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
 pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
 pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
 pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
           Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
           Family
          Length = 723

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 65  AIEAGNIP---LPNYVGEDRATSSTKDFHGPSTAADNRSNGVYGSGFSGLSHD 114
           AI    +P   LP Y G    T   K +H P   ++N S  ++  G +G +HD
Sbjct: 191 AINDSRVPIMELPTYTGSIYPT--VKPYHYPKAGSENPSISLHVIGLNGPTHD 241


>pdb|1DDW|A Chain A, Homer Evh1 Domain Unliganded
          Length = 120

 Score = 26.2 bits (56), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 96  ADNRSNGVYGSGFSGLSH 113
           AD+R+N VYG GFS   H
Sbjct: 78  ADSRANTVYGLGFSSEHH 95


>pdb|1I2H|A Chain A, Crystal Structure Analysis Of Psd-Zip45(Homer1cVESL-1l)
           Conserved Homer 1 Domain
          Length = 168

 Score = 26.2 bits (56), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 96  ADNRSNGVYGSGFSGLSH 113
           AD+R+N VYG GFS   H
Sbjct: 83  ADSRANTVYGLGFSSEHH 100


>pdb|1DDV|A Chain A, Crystal Structure Of The Homer Evh1 Domain With Bound
           Mglur Peptide
          Length = 111

 Score = 26.2 bits (56), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 96  ADNRSNGVYGSGFSGLSH 113
           AD+R+N VYG GFS   H
Sbjct: 78  ADSRANTVYGLGFSSEHH 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,140,553
Number of Sequences: 62578
Number of extensions: 132977
Number of successful extensions: 287
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 5
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)