Query 031444
Match_columns 159
No_of_seqs 177 out of 496
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 14:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0724 Zuotin and related mol 99.4 4.2E-13 9E-18 114.9 9.1 143 5-157 32-187 (335)
2 PF00249 Myb_DNA-binding: Myb- 99.2 4.1E-11 8.9E-16 76.9 5.4 45 5-59 2-47 (48)
3 smart00717 SANT SANT SWI3, AD 99.0 9.4E-10 2E-14 67.3 5.5 46 5-60 2-47 (49)
4 cd00167 SANT 'SWI3, ADA2, N-Co 98.9 1.8E-09 3.8E-14 65.3 5.1 44 6-59 1-44 (45)
5 PLN03212 Transcription repress 98.5 2.4E-07 5.3E-12 79.2 6.7 46 5-60 26-72 (249)
6 PF13921 Myb_DNA-bind_6: Myb-l 98.4 8E-07 1.7E-11 58.7 5.1 41 7-58 1-41 (60)
7 PLN03091 hypothetical protein; 98.3 1.1E-06 2.5E-11 80.3 6.6 46 5-60 15-61 (459)
8 TIGR01557 myb_SHAQKYF myb-like 98.1 2E-06 4.4E-11 58.4 3.0 24 131-155 1-24 (57)
9 PLN03212 Transcription repress 97.7 6.5E-05 1.4E-09 64.5 6.0 56 5-72 79-134 (249)
10 PLN03091 hypothetical protein; 97.5 0.00023 4.9E-09 65.5 6.1 47 5-62 68-114 (459)
11 PF00249 Myb_DNA-binding: Myb- 97.4 5.8E-05 1.3E-09 48.2 1.3 24 135-159 3-27 (48)
12 COG5259 RSC8 RSC chromatin rem 97.4 0.0002 4.4E-09 66.4 4.8 45 4-59 279-323 (531)
13 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00067 1.4E-08 46.1 5.6 46 5-60 4-54 (57)
14 KOG0457 Histone acetyltransfer 97.3 0.00029 6.2E-09 64.6 5.0 58 4-76 72-129 (438)
15 KOG4167 Predicted DNA-binding 97.3 0.00046 9.9E-09 67.0 5.9 46 3-59 618-663 (907)
16 KOG0048 Transcription factor, 97.1 0.00093 2E-08 55.7 5.2 44 5-59 63-106 (238)
17 KOG1279 Chromatin remodeling f 96.8 0.002 4.4E-08 60.1 5.0 46 3-59 252-297 (506)
18 cd00167 SANT 'SWI3, ADA2, N-Co 96.8 0.00083 1.8E-08 40.1 1.7 24 135-159 1-25 (45)
19 smart00717 SANT SANT SWI3, AD 96.6 0.0014 3E-08 39.5 1.9 25 134-159 2-27 (49)
20 COG5114 Histone acetyltransfer 96.5 0.0036 7.8E-08 56.4 4.7 58 5-77 64-121 (432)
21 KOG0049 Transcription factor, 95.8 0.013 2.8E-07 57.0 5.0 54 5-68 361-426 (939)
22 PLN03142 Probable chromatin-re 94.6 0.097 2.1E-06 52.7 7.1 55 5-69 825-889 (1033)
23 PF13837 Myb_DNA-bind_4: Myb/S 94.6 0.052 1.1E-06 37.6 3.7 62 5-68 2-72 (90)
24 PF13873 Myb_DNA-bind_5: Myb/S 94.3 0.2 4.3E-06 34.4 6.1 60 4-65 2-74 (78)
25 KOG0048 Transcription factor, 94.2 0.049 1.1E-06 45.4 3.4 44 5-58 10-54 (238)
26 KOG1194 Predicted DNA-binding 92.2 0.24 5.1E-06 46.5 4.9 43 5-58 188-230 (534)
27 KOG0050 mRNA splicing protein 91.7 0.23 4.9E-06 47.3 4.3 47 4-60 7-53 (617)
28 KOG0050 mRNA splicing protein 91.6 0.21 4.5E-06 47.6 3.8 53 5-69 60-112 (617)
29 KOG4329 DNA-binding protein [G 90.7 0.14 3E-06 47.0 1.8 29 130-159 274-302 (445)
30 PF12776 Myb_DNA-bind_3: Myb/S 90.2 1.7 3.7E-05 30.3 6.7 59 6-68 1-70 (96)
31 KOG0049 Transcription factor, 89.8 0.75 1.6E-05 45.2 6.0 50 5-64 254-304 (939)
32 KOG4329 DNA-binding protein [G 88.9 0.59 1.3E-05 43.0 4.3 45 4-58 277-321 (445)
33 KOG4468 Polycomb-group transcr 88.7 0.95 2.1E-05 44.0 5.7 60 4-74 88-158 (782)
34 PF13921 Myb_DNA-bind_6: Myb-l 86.8 0.36 7.8E-06 31.4 1.3 23 136-159 1-23 (60)
35 COG5147 REB1 Myb superfamily p 86.1 1 2.2E-05 42.5 4.3 50 5-65 73-122 (512)
36 PF09111 SLIDE: SLIDE; InterP 85.9 3.3 7.1E-05 31.9 6.3 54 3-63 48-113 (118)
37 KOG3554 Histone deacetylase co 80.6 1.8 3.8E-05 41.3 3.5 64 5-78 286-361 (693)
38 COG5118 BDP1 Transcription ini 80.1 4.2 9.1E-05 37.9 5.6 45 3-58 364-408 (507)
39 smart00595 MADF subfamily of S 79.9 2.6 5.7E-05 29.1 3.4 29 34-63 27-55 (89)
40 KOG3554 Histone deacetylase co 73.9 1.7 3.6E-05 41.5 1.3 25 134-159 286-310 (693)
41 KOG0051 RNA polymerase I termi 71.4 6.1 0.00013 38.2 4.4 46 4-61 384-429 (607)
42 PRK13923 putative spore coat p 68.0 12 0.00026 30.8 4.9 57 5-66 6-67 (170)
43 PF08914 Myb_DNA-bind_2: Rap1 67.1 12 0.00027 25.8 4.2 53 5-59 3-56 (65)
44 PF01466 Skp1: Skp1 family, di 64.3 16 0.00035 25.4 4.4 45 10-57 12-56 (78)
45 PF10545 MADF_DNA_bdg: Alcohol 62.7 18 0.0004 23.9 4.3 32 34-65 26-58 (85)
46 TIGR02894 DNA_bind_RsfA transc 59.7 21 0.00045 29.3 4.8 52 5-61 5-56 (161)
47 PF13404 HTH_AsnC-type: AsnC-t 57.3 31 0.00067 21.6 4.4 38 12-60 5-42 (42)
48 KOG4282 Transcription factor G 56.7 38 0.00082 29.4 6.3 65 4-69 54-122 (345)
49 PF04282 DUF438: Family of unk 56.3 7.6 0.00016 27.6 1.6 23 45-67 11-33 (71)
50 PF08930 DUF1912: Domain of un 55.0 9 0.0002 28.2 1.8 17 143-159 56-74 (84)
51 PF01388 ARID: ARID/BRIGHT DNA 54.7 21 0.00045 25.0 3.6 30 34-63 57-91 (92)
52 PF11035 SnAPC_2_like: Small n 53.8 63 0.0014 29.4 7.3 55 4-65 21-75 (344)
53 KOG1724 SCF ubiquitin ligase, 52.7 30 0.00065 28.0 4.7 45 10-57 96-140 (162)
54 KOG0051 RNA polymerase I termi 50.1 23 0.0005 34.4 4.2 55 4-61 436-508 (607)
55 smart00426 TEA TEA domain. 49.1 24 0.00051 25.2 3.1 22 4-27 3-24 (68)
56 cd08308 Death_Tube Death domai 49.0 5.8 0.00012 31.1 0.0 31 35-68 23-55 (125)
57 COG3404 Methenyl tetrahydrofol 49.0 60 0.0013 27.7 6.0 53 10-63 79-133 (208)
58 PLN03162 golden-2 like transcr 46.5 21 0.00045 33.4 3.2 27 126-153 230-256 (526)
59 COG5147 REB1 Myb superfamily p 44.2 13 0.00027 35.4 1.5 42 5-56 21-62 (512)
60 PF03732 Retrotrans_gag: Retro 44.0 40 0.00086 22.4 3.6 48 14-64 31-78 (96)
61 PF05524 PEP-utilisers_N: PEP- 43.4 36 0.00077 25.0 3.5 47 9-63 34-80 (123)
62 PF13325 MCRS_N: N-terminal re 42.2 1.3E+02 0.0029 25.2 7.1 51 3-61 72-127 (199)
63 PF06461 DUF1086: Domain of Un 41.4 83 0.0018 25.4 5.5 49 7-63 41-89 (145)
64 smart00501 BRIGHT BRIGHT, ARID 41.0 48 0.001 23.4 3.8 31 35-65 54-89 (93)
65 COG4281 ACB Acyl-CoA-binding p 40.3 52 0.0011 24.4 3.9 30 35-65 54-83 (87)
66 cd00086 homeodomain Homeodomai 40.0 90 0.002 19.2 6.2 46 5-58 5-50 (59)
67 KOG2656 DNA methyltransferase 39.2 22 0.00047 33.2 2.1 52 4-63 130-184 (445)
68 PF00887 ACBP: Acyl CoA bindin 38.8 33 0.00071 24.2 2.6 30 34-64 54-83 (87)
69 smart00386 HAT HAT (Half-A-TPR 37.8 64 0.0014 16.9 3.3 24 12-43 7-30 (33)
70 PF14775 NYD-SP28_assoc: Sperm 37.6 56 0.0012 22.2 3.5 32 36-67 2-39 (60)
71 PF13325 MCRS_N: N-terminal re 37.4 58 0.0013 27.4 4.3 45 6-62 1-48 (199)
72 cd08307 Death_Pelle Death doma 37.3 26 0.00055 26.2 1.9 14 35-48 22-35 (97)
73 PF07030 DUF1320: Protein of u 36.1 73 0.0016 24.1 4.3 28 49-76 84-111 (130)
74 cd00435 ACBP Acyl CoA binding 36.1 51 0.0011 23.6 3.3 29 35-64 53-81 (85)
75 PF10124 Mu-like_gpT: Mu-like 34.7 12 0.00026 33.2 -0.2 30 12-52 9-38 (291)
76 PF00046 Homeobox: Homeobox do 34.6 1.2E+02 0.0025 19.0 5.3 46 5-58 5-50 (57)
77 PTZ00458 acyl CoA binding prot 34.2 57 0.0012 23.9 3.3 27 37-64 57-83 (90)
78 PF05263 DUF722: Protein of un 34.0 1.1E+02 0.0025 23.9 5.2 29 35-64 100-128 (130)
79 KOG3841 TEF-1 and related tran 30.7 1.1E+02 0.0023 28.7 5.2 66 4-71 76-154 (455)
80 PF01285 TEA: TEA/ATTS domain 29.8 56 0.0012 30.3 3.3 54 4-59 49-112 (431)
81 TIGR02293 TAS_TIGR02293 putati 29.6 1.3E+02 0.0029 22.9 4.8 53 13-71 76-132 (133)
82 PF13560 HTH_31: Helix-turn-he 29.1 63 0.0014 21.0 2.6 32 45-76 13-44 (64)
83 COG5269 ZUO1 Ribosome-associat 28.5 83 0.0018 28.5 4.0 58 4-69 245-307 (379)
84 COG5201 SKP1 SCF ubiquitin lig 28.3 1.5E+02 0.0033 24.0 5.1 45 10-57 91-135 (158)
85 COG1522 Lrp Transcriptional re 28.1 73 0.0016 23.6 3.2 27 35-62 23-49 (154)
86 PF13748 ABC_membrane_3: ABC t 28.0 57 0.0012 28.2 2.8 27 35-61 171-197 (237)
87 PRK11179 DNA-binding transcrip 27.1 1.4E+02 0.003 22.9 4.6 40 11-61 10-49 (153)
88 COG5259 RSC8 RSC chromatin rem 27.1 34 0.00073 32.7 1.4 25 134-159 280-304 (531)
89 PF09111 SLIDE: SLIDE; InterP 26.0 72 0.0016 24.4 2.8 21 133-154 49-69 (118)
90 PF13428 TPR_14: Tetratricopep 26.0 83 0.0018 18.8 2.6 23 12-42 21-43 (44)
91 KOG2009 Transcription initiati 25.9 72 0.0016 31.0 3.3 45 3-58 408-452 (584)
92 PF10743 Phage_Cox: Regulatory 25.8 85 0.0018 23.4 3.0 30 37-77 15-44 (87)
93 KOG4559 Uncharacterized conser 25.3 3.1E+02 0.0066 21.4 6.1 47 9-68 50-100 (120)
94 PLN03142 Probable chromatin-re 25.2 2.1E+02 0.0045 29.6 6.5 51 4-64 926-988 (1033)
95 PRK11169 leucine-responsive tr 24.5 1.2E+02 0.0025 23.6 3.8 27 35-62 29-55 (164)
96 PF00557 Peptidase_M24: Metall 24.3 2.1E+02 0.0045 22.2 5.2 42 8-63 101-142 (207)
97 PF13432 TPR_16: Tetratricopep 24.1 1.3E+02 0.0027 18.8 3.3 42 12-61 17-59 (65)
98 cd07216 Pat17_PNPLA8_PNPLA9_li 24.0 88 0.0019 26.6 3.2 26 39-64 54-81 (309)
99 smart00389 HOX Homeodomain. DN 22.6 2E+02 0.0042 17.6 6.1 46 5-58 5-50 (56)
100 PLN03162 golden-2 like transcr 22.5 2.6E+02 0.0057 26.4 6.1 55 5-66 238-293 (526)
101 PF11827 DUF3347: Protein of u 22.5 4E+02 0.0086 21.3 6.6 57 11-69 71-127 (174)
102 KOG4468 Polycomb-group transcr 22.2 42 0.00091 33.1 1.0 25 133-158 88-112 (782)
103 COG3053 CitC Citrate lyase syn 22.1 70 0.0015 29.1 2.3 30 35-64 316-345 (352)
104 cd06257 DnaJ DnaJ domain or J- 22.1 1E+02 0.0022 18.8 2.5 19 45-63 10-28 (55)
105 KOG1194 Predicted DNA-binding 21.6 48 0.001 31.6 1.3 24 135-159 189-212 (534)
106 PRK02220 4-oxalocrotonate taut 21.6 1.5E+02 0.0032 18.9 3.3 23 43-65 8-30 (61)
107 PF11626 Rap1_C: TRF2-interact 21.5 1.7E+02 0.0038 20.6 3.9 12 4-15 47-58 (87)
108 PF15508 NAAA-beta: beta subun 20.5 1.3E+02 0.0029 21.5 3.1 28 34-62 15-42 (95)
109 cd08796 Death_IRAK-M Death dom 20.0 76 0.0017 23.4 1.8 11 35-45 25-35 (89)
No 1
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.2e-13 Score=114.88 Aligned_cols=143 Identities=31% Similarity=0.463 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCC---ChHHHhHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDD---SKEEQQQQWQKIASMVPS-RSVEELKQHYQILLEDVNAIEAGNIPLPNYVGED 80 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~---~p~~~~drWekIA~~VPG-KT~~ev~~hY~~L~eDV~~IEsG~vplP~y~~~~ 80 (159)
..|+.++.|.|+.||+.| ..+. ++ ++|++++.+||+ ++..+++++|..++.||..|+++++|+|.|....
T Consensus 32 ~~~~~~~~k~i~ka~~i~--~~~~~~~t~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~ 105 (335)
T KOG0724|consen 32 SLWTEEEFKKIEKALAIL--DDDEPRRTP----DSWDKFAEALPLEKRLEDKIEEYIGLVFDVNIRESGQKPFPKYGKSD 105 (335)
T ss_pred hhhHHHHHHHHHHHHHHH--hccccccch----hhhhHHHhcCccccccchhHHhhhhhHHHHhhhhccCCCccccCccc
Confidence 569999999999999999 5421 66 999999999999 9999999999999999999999999999998542
Q ss_pred CCCCCCCCCCCCCCccccCCCCcCCCC------CC-CCCCC--CCCCCCCCCCcchhhhcCCCCCCHHHHHHHHHHHHHH
Q 031444 81 RATSSTKDFHGPSTAADNRSNGVYGSG------FS-GLSHD--PSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEK 151 (159)
Q Consensus 81 ~~~~~~~~~~~~~~t~~~~~~~~~~~G------~~-~~~~~--~~~~~~k~~~~~~~~rkkg~pWteeEHr~fl~g~l~k 151 (159)
........+.. +-........+.+- +. ..... ..+. .........++++|++||+.+|++|+++ +.+
T Consensus 106 ~~~~~~~~~~~--~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (335)
T KOG0724|consen 106 TSLAEVEEFYN--FWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGT-QRGKSNAEELRRKGTPVTERERKLVLLA-LKK 181 (335)
T ss_pred cccccccccCC--ccccccccccCCCCCCcccccccchhhhhhcccc-cccccchhhhhhccchhHHHHHHHHHhh-hcc
Confidence 11110000000 00000000111110 00 00000 0000 1112345778999999999999999999 999
Q ss_pred hhcccc
Q 031444 152 HFKKFC 157 (159)
Q Consensus 152 ~gk~~~ 157 (159)
||++.+
T Consensus 182 ~~~~~~ 187 (335)
T KOG0724|consen 182 DGKIDW 187 (335)
T ss_pred cccccc
Confidence 999864
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.19 E-value=4.1e-11 Score=76.95 Aligned_cols=45 Identities=33% Similarity=0.676 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L 59 (159)
..||.+|+.+|..|+.+| + . ++|.+||..|| +||..||+.||..|
T Consensus 2 ~~Wt~eE~~~l~~~v~~~--g----~----~~W~~Ia~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKY--G----K----DNWKKIAKRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp -SS-HHHHHHHHHHHHHS--T----T----THHHHHHHHHSSSSTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--C----C----cHHHHHHHHcCCCCCHHHHHHHHHhh
Confidence 369999999999999999 5 3 58999999999 99999999999987
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.00 E-value=9.4e-10 Score=67.31 Aligned_cols=46 Identities=28% Similarity=0.629 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+|+++|..+++.| +. .+|..||..+|+||..+|+.+|..++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~--g~--------~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKY--GK--------NNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHH--Cc--------CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 579999999999999999 52 47999999999999999999999875
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.95 E-value=1.8e-09 Score=65.34 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 6 TWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 6 ~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
.||.+|+++|.++++.| +. ..|..||..||+||..+|+.||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~--g~--------~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKY--GK--------NNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHH--Cc--------CCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 49999999999999999 52 4799999999999999999999876
No 5
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.51 E-value=2.4e-07 Score=79.20 Aligned_cols=46 Identities=17% Similarity=0.358 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC-CCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV-PSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V-PGKT~~ev~~hY~~L~ 60 (159)
..||.|||.++-.+++.| . + .+|..||..+ |+||..||++||...+
T Consensus 26 g~WT~EEDe~L~~lV~ky--G----~----~nW~~IAk~~g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 26 GPWTVEEDEILVSFIKKE--G----E----GRWRSLPKRAGLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCCCHHHHHHHHHHHHHh--C----c----ccHHHHHHhhhcCCCcchHHHHHHHhh
Confidence 469999999999999999 4 3 6899999988 6999999999999866
No 6
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.37 E-value=8e-07 Score=58.66 Aligned_cols=41 Identities=22% Similarity=0.545 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 7 WSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 7 WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
||.+|+.++..++..| + +.|.+||..||.||..+|+.||..
T Consensus 1 WT~eEd~~L~~~~~~~--g---------~~W~~Ia~~l~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY--G---------NDWKKIAEHLGNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHH--T---------S-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--C---------cCHHHHHHHHCcCCHHHHHHHHHH
Confidence 9999999999999999 4 479999999966999999999999
No 7
>PLN03091 hypothetical protein; Provisional
Probab=98.32 E-value=1.1e-06 Score=80.34 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L~ 60 (159)
..||.+||+++-.++.+| + + ..|.+||..++ |||..+|++||...+
T Consensus 15 g~WTpEEDe~L~~~V~ky--G----~----~nWs~IAk~~g~gRT~KQCRERW~NyL 61 (459)
T PLN03091 15 GLWSPEEDEKLLRHITKY--G----H----GCWSSVPKQAGLQRCGKSCRLRWINYL 61 (459)
T ss_pred CCCCHHHHHHHHHHHHHh--C----c----CCHHHHhhhhccCcCcchHhHHHHhcc
Confidence 469999999999999999 5 3 58999999875 999999999996543
No 8
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=98.13 E-value=2e-06 Score=58.39 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=22.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcc
Q 031444 131 RKGIPWTEEEHRQIWKRRLEKHFKK 155 (159)
Q Consensus 131 kkg~pWteeEHr~fl~g~l~k~gk~ 155 (159)
|++++||+|||+.||.| |+.||.|
T Consensus 1 k~r~~WT~eeh~~Fl~a-i~~~G~g 24 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQA-VQKLGGP 24 (57)
T ss_pred CCCCCCCHHHHHHHHHH-HHHhCCC
Confidence 56789999999999999 9999984
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.73 E-value=6.5e-05 Score=64.49 Aligned_cols=56 Identities=20% Similarity=0.357 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIP 72 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vp 72 (159)
..||.+|+.++..+.+.| . .+|.+||..|||+|-.+|+.||..++.-. .+..|..|
T Consensus 79 gpWT~EED~lLlel~~~~--G---------nKWs~IAk~LpGRTDnqIKNRWns~LrK~-l~r~~i~p 134 (249)
T PLN03212 79 GGITSDEEDLILRLHRLL--G---------NRWSLIAGRIPGRTDNEIKNYWNTHLRKK-LLRQGIDP 134 (249)
T ss_pred CCCChHHHHHHHHHHHhc--c---------ccHHHHHhhcCCCCHHHHHHHHHHHHhHH-HHhcCCCC
Confidence 579999999999888888 3 68999999999999999999999877543 33344433
No 10
>PLN03091 hypothetical protein; Provisional
Probab=97.47 E-value=0.00023 Score=65.54 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
..||.+||+++-.+.+.| + .+|.+||..|||||..+|+.||..++.-
T Consensus 68 gpWT~EED~lLLeL~k~~--G---------nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 68 GTFSQQEENLIIELHAVL--G---------NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCHHHHHHHHHHHHHh--C---------cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999 4 5899999999999999999999987664
No 11
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.43 E-value=5.8e-05 Score=48.21 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcc-cccC
Q 031444 135 PWTEEEHRQIWKRRLEKHFKK-FCDI 159 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~gk~-~~~~ 159 (159)
|||+||+.+|+.+ +.+||++ |..|
T Consensus 3 ~Wt~eE~~~l~~~-v~~~g~~~W~~I 27 (48)
T PF00249_consen 3 PWTEEEDEKLLEA-VKKYGKDNWKKI 27 (48)
T ss_dssp SS-HHHHHHHHHH-HHHSTTTHHHHH
T ss_pred CCCHHHHHHHHHH-HHHhCCcHHHHH
Confidence 8999999999999 9999999 7654
No 12
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=97.40 E-value=0.0002 Score=66.39 Aligned_cols=45 Identities=29% Similarity=0.493 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
...||++|--++-.++.+| . |.|++||..|..||++||+-||..|
T Consensus 279 dk~WS~qE~~LLLEGIe~y--g---------DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMY--G---------DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred cccccHHHHHHHHHHHHHh--h---------hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 3479999999999999999 3 7899999999999999999999876
No 13
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.33 E-value=0.00067 Score=46.07 Aligned_cols=46 Identities=15% Similarity=0.402 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHH---HHHHHhCC-CC-CHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQW---QKIASMVP-SR-SVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drW---ekIA~~VP-GK-T~~ev~~hY~~L~ 60 (159)
-.||.||...|..||..| +.. .| .+|++++. .+ |..+|+.|++...
T Consensus 4 ~~WT~eeh~~Fl~ai~~~--G~g--------~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 4 VVWTEDLHDRFLQAVQKL--GGP--------DWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCHHHHHHHHHHHHHh--CCC--------cccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 469999999999999999 642 47 89988764 34 9999999999753
No 14
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.33 E-value=0.00029 Score=64.57 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNY 76 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y 76 (159)
...||.+|..+|-.|+..| .- ..|+-||..|..||.+||++||... -|++-..|+|..
T Consensus 72 ~~~WtadEEilLLea~~t~--G~--------GNW~dIA~hIGtKtkeeck~hy~k~-----fv~s~~~~~~~i 129 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETY--GF--------GNWQDIADHIGTKTKEECKEHYLKH-----FVNSPIFPLPDI 129 (438)
T ss_pred CCCCChHHHHHHHHHHHHh--CC--------CcHHHHHHHHcccchHHHHHHHHHH-----HhcCcccccccc
Confidence 3679999999999999999 53 5899999999999999999999874 367777777744
No 15
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=97.28 E-value=0.00046 Score=67.01 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
.+..||..|.++|-.||.+| .+ .+.+|+.+|++||+.||.+.|-.-
T Consensus 618 gSd~WTp~E~~lF~kA~y~~--~K---------DF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 618 GSDKWTPLERKLFNKALYTY--SK---------DFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred CcccccHHHHHHHHHHHHHh--cc---------cHHHHHHHhccccHHHHHHHHHHH
Confidence 56789999999999999999 54 468999999999999999998543
No 16
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.09 E-value=0.00093 Score=55.72 Aligned_cols=44 Identities=27% Similarity=0.494 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
..||.||+.+.-.|=+.+ . +||..||..|||+|--+|+.|..--
T Consensus 63 g~fT~eEe~~Ii~lH~~~--G---------NrWs~IA~~LPGRTDNeIKN~Wnt~ 106 (238)
T KOG0048|consen 63 GNFSDEEEDLIIKLHALL--G---------NRWSLIAGRLPGRTDNEVKNHWNTH 106 (238)
T ss_pred CCCCHHHHHHHHHHHHHH--C---------cHHHHHHhhCCCcCHHHHHHHHHHH
Confidence 469999999999999999 4 7999999999999999999887543
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.76 E-value=0.002 Score=60.09 Aligned_cols=46 Identities=26% Similarity=0.467 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
....||.+|.-++-.||-+| . |.|.+||..|..||.+||+-||..|
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y--~---------ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMY--G---------DDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHh--c---------ccHHHHHhccCCCCHHHHHHHHHhc
Confidence 45789999999999999999 3 6899999999999999999999876
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.76 E-value=0.00083 Score=40.11 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 135 PWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
|||+||+++|+.+ +.+|| +.|..|
T Consensus 1 ~Wt~eE~~~l~~~-~~~~g~~~w~~I 25 (45)
T cd00167 1 PWTEEEDELLLEA-VKKYGKNNWEKI 25 (45)
T ss_pred CCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence 7999999999999 99999 777643
No 19
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=96.60 E-value=0.0014 Score=39.53 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
.+||+||..+|+.+ +.+|| +.|..|
T Consensus 2 ~~Wt~~E~~~l~~~-~~~~g~~~w~~I 27 (49)
T smart00717 2 GEWTEEEDELLIEL-VKKYGKNNWEKI 27 (49)
T ss_pred CCCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence 58999999999999 99999 887654
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.52 E-value=0.0036 Score=56.41 Aligned_cols=58 Identities=28% Similarity=0.528 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYV 77 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~ 77 (159)
..|+..|.-+|-.++... . - ..|+-||..|+.++.+||+.||-... |||..+|||...
T Consensus 64 e~WgadEEllli~~~~Tl--G----l----GNW~dIadyiGsr~kee~k~HylK~y-----~es~~ypl~~i~ 121 (432)
T COG5114 64 EGWGADEELLLIECLDTL--G----L----GNWEDIADYIGSRAKEEIKSHYLKMY-----DESKYYPLPDIT 121 (432)
T ss_pred CCcCchHHHHHHHHHHhc--C----C----CcHHHHHHHHhhhhhHHHHHHHHHHH-----hhcccccccccc
Confidence 579999999999999999 4 3 58999999999999999999998753 688888888775
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.84 E-value=0.013 Score=56.97 Aligned_cols=54 Identities=28% Similarity=0.524 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH------------HHHHHHHHHh
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI------------LLEDVNAIEA 68 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~------------L~eDV~~IEs 68 (159)
..||.+||.++-.|++.| . . ..|-+|-+.|||+|-.||+.||-. |++|-..|+.
T Consensus 361 g~wt~~ED~~L~~AV~~Y--g----~----kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~ 426 (939)
T KOG0049|consen 361 GRWTDQEDVLLVCAVSRY--G----A----KDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYA 426 (939)
T ss_pred CCCCCHHHHHHHHHHHHh--C----c----cchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHH
Confidence 469999999999999999 4 3 689999999999999999999985 4566666654
No 22
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.62 E-value=0.097 Score=52.71 Aligned_cols=55 Identities=29% Similarity=0.449 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH----------HHHHHhC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED----------VNAIEAG 69 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD----------V~~IEsG 69 (159)
..||+.+=..|-+|.++| +. +.-++||..|.|||++||++.++..-+- +..||.|
T Consensus 825 ~~w~~~~f~~f~~~~~~~--gr--------~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~ 889 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKY--GR--------NDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERG 889 (1033)
T ss_pred CcccHHHHHHHHHHHHHh--CH--------hHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 569999999999999999 64 4669999999999999999655544332 5667777
No 23
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.56 E-value=0.052 Score=37.60 Aligned_cols=62 Identities=18% Similarity=0.391 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHhh--hc--ccC-CCChHHHhHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHh
Q 031444 5 ATWSREEDKAFENAIAM--HC--IEE-DDSKEEQQQQWQKIASMVP----SRSVEELKQHYQILLEDVNAIEA 68 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~--~~--~~~-~~~p~~~~drWekIA~~VP----GKT~~ev~~hY~~L~eDV~~IEs 68 (159)
..||.+|-++|-.+... +- +.. .... ....|+.||..|- .+|+.||+.+++.|..+.+.|-.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~--~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~ 72 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKR--NKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD 72 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS----HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhcccc--chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999888 30 111 1011 1247999999874 68999999999999999987754
No 24
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.30 E-value=0.2 Score=34.36 Aligned_cols=60 Identities=23% Similarity=0.423 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCC--------CChHHHhHHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEED--------DSKEEQQQQWQKIASMV-----PSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~--------~~p~~~~drWekIA~~V-----PGKT~~ev~~hY~~L~eDV~~ 65 (159)
...||.+|..+|...+..| +.- .+......-|+.||..| +-||+.+|+..|..|...++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~--~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKH--KDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCHHHHHHHHHHHHHh--HHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999998887 321 02223446799999877 259999999999999988764
No 25
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=94.20 E-value=0.049 Score=45.43 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQI 58 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~ 58 (159)
..||.|||..+-.-+..| .+ ..|..||..+| |++-+.|+.|.-.
T Consensus 10 GpWt~EED~~L~~~V~~~------G~----~~W~~i~k~~gl~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSF------GK----HNGTALPKLAGLRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHHHHHh------CC----CCcchhhhhcCCCccchHHHHHhhc
Confidence 579999999999999999 45 68999999999 9999999999763
No 26
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=92.21 E-value=0.24 Score=46.53 Aligned_cols=43 Identities=30% Similarity=0.526 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
..||.||--+||+|...| .+ +..+|-++||.||...+++.|-.
T Consensus 188 d~WT~Ed~vlFe~aF~~~--GK---------~F~kIrq~LP~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 188 DEWTAEDIVLFEQAFQFF--GK---------DFHKIRQALPHRSLASLVQYYYS 230 (534)
T ss_pred ccchHHHHHHHHHHHHHh--cc---------cHHHHHHHccCccHHHHHHHHHH
Confidence 579999999999999999 64 56899999999999999988853
No 27
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.70 E-value=0.23 Score=47.28 Aligned_cols=47 Identities=26% Similarity=0.560 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
...|+..||.++-.|...| + . +.|-+||+.++-||+.+|+.+|.+-+
T Consensus 7 ggvwrntEdeilkaav~ky--g----~----nqws~i~sll~~kt~rqC~~rw~e~l 53 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKY--G----K----NQWSRIASLLNRKTARQCKARWEEWL 53 (617)
T ss_pred cceecccHHHHHHHHHHHc--c----h----HHHHHHHHHHhhcchhHHHHHHHHHh
Confidence 3579999999999999999 4 3 79999999999999999999998644
No 28
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=0.21 Score=47.57 Aligned_cols=53 Identities=26% Similarity=0.500 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAG 69 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG 69 (159)
..|+++||..+-.+-..+ | ..|--||..| |+|..+|.+||..|+..-..-..+
T Consensus 60 tews~eederlLhlakl~-------p----~qwrtIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~ 112 (617)
T KOG0050|consen 60 TEWSREEDERLLHLAKLE-------P----TQWRTIADIM-GRTSQQCLERYNNLLDVYVSYHYH 112 (617)
T ss_pred hhhhhhHHHHHHHHHHhc-------C----CccchHHHHh-hhhHHHHHHHHHHHHHHHHhhhcc
Confidence 469999998887766665 3 6899999987 899999999999999887665555
No 29
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=90.71 E-value=0.14 Score=47.02 Aligned_cols=29 Identities=38% Similarity=0.370 Sum_probs=24.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 130 RRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 130 rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
|-.-.-|||+|-|.|=.| |+.|||.|.-|
T Consensus 274 rd~l~~wsEeEcr~FEeg-l~~yGKDF~lI 302 (445)
T KOG4329|consen 274 RDDLSGWSEEECRNFEEG-LELYGKDFHLI 302 (445)
T ss_pred ccccccCCHHHHHHHHHH-HHHhcccHHHH
Confidence 344457999999999999 99999999754
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=90.18 E-value=1.7 Score=30.30 Aligned_cols=59 Identities=17% Similarity=0.353 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHhhhc----ccCCC--ChHHHhHHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHh
Q 031444 6 TWSREEDKAFENAIAMHC----IEEDD--SKEEQQQQWQKIASMVP-----SRSVEELKQHYQILLEDVNAIEA 68 (159)
Q Consensus 6 ~WT~eEdK~FE~ALa~~~----~~~~~--~p~~~~drWekIA~~VP-----GKT~~ev~~hY~~L~eDV~~IEs 68 (159)
.||.++++.|-.+|...- .+.+. ++ .-|..|+..+- ..|..+|+.||..|-.+-..+..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~----~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~ 70 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKK----EGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKE 70 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCH----HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 499999999988886651 12110 24 78999998764 36889999999999999887755
No 31
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=89.85 E-value=0.75 Score=45.21 Aligned_cols=50 Identities=22% Similarity=0.358 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPS-RSVEELKQHYQILLEDVN 64 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPG-KT~~ev~~hY~~L~eDV~ 64 (159)
..||.||+..+ .|||.- +.- -.|++||..+.. +|.-||+++|+.-+.-+.
T Consensus 254 ~~WS~EE~E~L-~AiA~A--~~~-------~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 254 EHWSNEEVEKL-KALAEA--PKF-------VSWPMIALNLGTNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred hccChHHHHHH-HHHHhc--ccc-------ccHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 46999999876 467766 655 689999999985 999999999986554443
No 32
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=88.89 E-value=0.59 Score=43.01 Aligned_cols=45 Identities=33% Similarity=0.465 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
-+.||.+|=+.||..|..| .++ .-.--|..|+.||+-||.+.|-.
T Consensus 277 l~~wsEeEcr~FEegl~~y--GKD--------F~lIr~nkvrtRsvgElVeyYYl 321 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELY--GKD--------FHLIRANKVRTRSVGELVEYYYL 321 (445)
T ss_pred cccCCHHHHHHHHHHHHHh--ccc--------HHHHHhcccccchHHHHHHHHHH
Confidence 3579999999999999999 765 33555788999999999987753
No 33
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=88.74 E-value=0.95 Score=44.01 Aligned_cols=60 Identities=23% Similarity=0.514 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHH----------HHhCCCCCHHHHHHHHHHHHHHHHHHHhCC-CC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKI----------ASMVPSRSVEELKQHYQILLEDVNAIEAGN-IP 72 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekI----------A~~VPGKT~~ev~~hY~~L~eDV~~IEsG~-vp 72 (159)
-..||..|.-.|=.||.+| .++ +++| -+.+--||..+|+.||-.++.-+.....|. ++
T Consensus 88 ktaWt~~E~~~Ffdal~~~--GKd---------Fe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~k~~F~~~l~ 156 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQV--GKD---------FEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMNKLLFGPDLS 156 (782)
T ss_pred ccccchhhHHHHHHHHHHh--ccc---------HHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHHhhhcccccC
Confidence 3579999999999999999 765 4666 455667999999999999988777666543 44
Q ss_pred CC
Q 031444 73 LP 74 (159)
Q Consensus 73 lP 74 (159)
+|
T Consensus 157 ~d 158 (782)
T KOG4468|consen 157 LD 158 (782)
T ss_pred cc
Confidence 43
No 34
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=86.77 E-value=0.36 Score=31.41 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHHHHhhcccccC
Q 031444 136 WTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 136 WteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
||+||-.+.+.. .++||..|..|
T Consensus 1 WT~eEd~~L~~~-~~~~g~~W~~I 23 (60)
T PF13921_consen 1 WTKEEDELLLEL-VKKYGNDWKKI 23 (60)
T ss_dssp S-HHHHHHHHHH-HHHHTS-HHHH
T ss_pred CCHHHHHHHHHH-HHHHCcCHHHH
Confidence 999999999999 99999888754
No 35
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=86.15 E-value=1 Score=42.52 Aligned_cols=50 Identities=28% Similarity=0.473 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
..||.+|++.+-.+=..+ + .+|.-||..|||+|..+|.++|..+.++...
T Consensus 73 ~~~~~eed~~li~l~~~~------~-----~~wstia~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 73 KNWSEEEDEQLIDLDKEL------G-----TQWSTIADYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred ccccHHHHHHHHHHHHhc------C-----chhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence 569999998877666666 4 4899999999999999999999999999876
No 36
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=85.87 E-value=3.3 Score=31.85 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC------------CCCCHHHHHHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV------------PSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V------------PGKT~~ev~~hY~~L~eDV 63 (159)
....+|.+||+.+-.+|..| +-+ ++ +.|++|-..| -.+|+.|+.+|-..|+.-|
T Consensus 48 ~~k~yseeEDRfLl~~~~~~--G~~-~~----~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKY--GYD-AE----GNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHH--TTT-ST----THHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHh--CCC-CC----chHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 34689999999999999999 886 77 9999998765 3799999999999998655
No 37
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=80.59 E-value=1.8 Score=41.30 Aligned_cols=64 Identities=23% Similarity=0.426 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH------HH--HHHHHhC----CCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL------ED--VNAIEAG----NIP 72 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~------eD--V~~IEsG----~vp 72 (159)
..||..|-.+||.||-+| .+| .- +--+..+|=||...+.+.|-..- +. ++.-|+. .|-
T Consensus 286 EEWSasEanLFEeALeKy--GKD-Fn-------dIrqdfLPWKSl~sIveyYYmwKttdRYvqqKrlKaaeadsKlkqvY 355 (693)
T KOG3554|consen 286 EEWSASEANLFEEALEKY--GKD-FN-------DIRQDFLPWKSLTSIVEYYYMWKTTDRYVQQKRLKAAEADSKLKQVY 355 (693)
T ss_pred hhccchhhHHHHHHHHHh--ccc-HH-------HHHHhhcchHHHHHHHHHHHHHhhhhHHHHHHhhhhhhhhhhhheee
Confidence 369999999999999999 877 43 44567899999999998885432 11 1223332 477
Q ss_pred CCCCCC
Q 031444 73 LPNYVG 78 (159)
Q Consensus 73 lP~y~~ 78 (159)
+|.|.-
T Consensus 356 IP~ynK 361 (693)
T KOG3554|consen 356 IPTYNK 361 (693)
T ss_pred ccCCCC
Confidence 899964
No 38
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=80.09 E-value=4.2 Score=37.89 Aligned_cols=45 Identities=24% Similarity=0.513 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
....||..|-..|=.||.++ .- .+..|+++.|.|+..||+..|..
T Consensus 364 ~~~~Ws~~e~ekFYKALs~w--Gt---------dF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIW--GT---------DFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCCcccHHHHHHHHHHHHHh--cc---------hHHHHHHhcCchhHHHHHHHHHH
Confidence 34689999999999999999 52 46899999999999999998874
No 39
>smart00595 MADF subfamily of SANT domain.
Probab=79.89 E-value=2.6 Score=29.09 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=24.4
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..-|..||..+ |.|+.+|+.+.+.|..--
T Consensus 27 ~~aW~~Ia~~l-~~~~~~~~~kw~~LR~~y 55 (89)
T smart00595 27 RKAWEEIAEEL-GLSVEECKKRWKNLRDRY 55 (89)
T ss_pred HHHHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46799999999 569999999999886543
No 40
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=73.86 E-value=1.7 Score=41.49 Aligned_cols=25 Identities=36% Similarity=0.435 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
.-|+--|--||=.. |+||||.|.||
T Consensus 286 EEWSasEanLFEeA-LeKyGKDFndI 310 (693)
T KOG3554|consen 286 EEWSASEANLFEEA-LEKYGKDFNDI 310 (693)
T ss_pred hhccchhhHHHHHH-HHHhcccHHHH
Confidence 36999999999999 99999999987
No 41
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=71.43 E-value=6.1 Score=38.25 Aligned_cols=46 Identities=15% Similarity=0.518 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLE 61 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~e 61 (159)
...||.+|+..+-.-.+++ . .+|..|+.+| |+.+.+|+.|+...+.
T Consensus 384 rg~wt~ee~eeL~~l~~~~--g---------~~W~~Ig~~l-gr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 384 RGKWTPEEEEELKKLVVEH--G---------NDWKEIGKAL-GRMPMDCRDRWRQYVK 429 (607)
T ss_pred cCCCCcchHHHHHHHHHHh--c---------ccHHHHHHHH-ccCcHHHHHHHHHhhc
Confidence 4679999998876666666 2 6899999998 8999999998876543
No 42
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=68.00 E-value=12 Score=30.80 Aligned_cols=57 Identities=12% Similarity=0.370 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH-----HHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL-----EDVNAI 66 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~-----eDV~~I 66 (159)
..||.++|.++...+..| -..+.- |-+-.+-++..+ ++|+..|--||...| ++|..+
T Consensus 6 dawt~e~d~llae~vl~~--i~eg~t--ql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~I~~A 67 (170)
T PRK13923 6 DAWTQERDGLLAEVVLRH--IREGGT--QLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQIKLA 67 (170)
T ss_pred hhhhhHHHHHHHHHHHHH--Hhccch--HHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 579999999999988888 443232 556778888877 799999999995444 455544
No 43
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=67.15 E-value=12 Score=25.84 Aligned_cols=53 Identities=13% Similarity=0.344 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L 59 (159)
...|.+||.++-.-|+.+ .....+-..+.-|..+|+.-| .-|-.-.+.||..-
T Consensus 3 ~~fT~edD~~l~~~v~~~--~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~ 56 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKEN--ERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKH 56 (65)
T ss_dssp ----HHHHHHHHHHHHHT----STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--ccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 357999999999999877 432122234578999999988 99999999999643
No 44
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=64.26 E-value=16 Score=25.41 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 10 EEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 10 eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
+.+.+|+.+.|...++-. .=-+---..||..+-|||++|+++.|.
T Consensus 12 ~~~~L~~l~~AA~yL~I~---~L~~~~~~~iA~~i~gks~eeir~~fg 56 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIK---GLLDLCCKYIANMIKGKSPEEIRKYFG 56 (78)
T ss_dssp -HHHHHHHHHHHHHHT-H---HHHHHHHHHHHHHHTTS-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcch---HHHHHHHHHHHHHhcCCCHHHHHHHcC
Confidence 456888888888754432 112233478899999999999999885
No 45
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=62.68 E-value=18 Score=23.95 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=26.4
Q ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPS-RSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 34 ~drWekIA~~VPG-KT~~ev~~hY~~L~eDV~~ 65 (159)
.+-|+.||..+.. -++.+|+++...|......
T Consensus 26 ~~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~ 58 (85)
T PF10545_consen 26 EEAWQEIARELGKEFSVDDCKKRWKNLRDRYRR 58 (85)
T ss_pred HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 4679999999963 6899999999999876644
No 46
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=59.73 E-value=21 Score=29.28 Aligned_cols=52 Identities=19% Similarity=0.426 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLE 61 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~e 61 (159)
..||.+||.++=..+-.| |-++ +. |-.-.+-|+..+ ++|+.-|-=|+...|.
T Consensus 5 DAWT~eeDlLLAEtVLrh-IReG-~T--QL~AFeEvg~~L-~RTsAACGFRWNs~VR 56 (161)
T TIGR02894 5 DAWTHEEDLLLAETVLRH-IREG-ST--QLSAFEEVGRAL-NRTAAACGFRWNAYVR 56 (161)
T ss_pred cccccHHHHHHHHHHHHH-Hhcc-hH--HHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence 579999999998887777 3555 43 667789999998 7999887666555554
No 47
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=57.34 E-value=31 Score=21.64 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 12 DKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 12 dK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
|+..-++|..- + . --|..||..| |-|...|.+|.+.|.
T Consensus 5 D~~Il~~Lq~d--~----r----~s~~~la~~l-glS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 5 DRKILRLLQED--G----R----RSYAELAEEL-GLSESTVRRRIRRLE 42 (42)
T ss_dssp HHHHHHHHHH---T----T----S-HHHHHHHH-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--C----C----ccHHHHHHHH-CcCHHHHHHHHHHhC
Confidence 44555555555 3 2 4689999998 899999999999873
No 48
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=56.74 E-value=38 Score=29.41 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP----SRSVEELKQHYQILLEDVNAIEAG 69 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP----GKT~~ev~~hY~~L~eDV~~IEsG 69 (159)
...||.+|=++|-.+.-..|..-. .......-|+.||..+. =||..+|+..++.|..-.+....+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~-~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~ 122 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALR-RGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAK 122 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-hhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 378999999999888776642211 11112356999998333 399999999999998877765544
No 49
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=56.31 E-value=7.6 Score=27.64 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 031444 45 PSRSVEELKQHYQILLEDVNAIE 67 (159)
Q Consensus 45 PGKT~~ev~~hY~~L~eDV~~IE 67 (159)
-|.++++|++.|..++.+|..+|
T Consensus 11 ~G~~~e~vk~~F~~~~~~Vs~~E 33 (71)
T PF04282_consen 11 EGEDPEEVKEEFKKLFSDVSASE 33 (71)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHH
Confidence 48899999999999998886643
No 50
>PF08930 DUF1912: Domain of unknown function (DUF1912); InterPro: IPR015026 This protein has no known function. It is found in various Streptococcal proteins. ; PDB: 1Z0P_A.
Probab=55.02 E-value=9 Score=28.19 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=10.5
Q ss_pred HHHHHHHHHh--hcccccC
Q 031444 143 QIWKRRLEKH--FKKFCDI 159 (159)
Q Consensus 143 ~fl~g~l~k~--gk~~~~~ 159 (159)
+||+|....| ||||.|+
T Consensus 56 ~Fl~gKF~Ny~~GK~FHD~ 74 (84)
T PF08930_consen 56 QFLQGKFENYKAGKGFHDL 74 (84)
T ss_dssp HHHHHHHHHHHHT--TTS-
T ss_pred HHHHHHHhhhhcCCccccC
Confidence 6999966554 8999874
No 51
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=54.65 E-value=21 Score=24.95 Aligned_cols=30 Identities=23% Similarity=0.537 Sum_probs=22.3
Q ss_pred hHHHHHHHHhCCCCC-----HHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRS-----VEELKQHYQILLEDV 63 (159)
Q Consensus 34 ~drWekIA~~VPGKT-----~~ev~~hY~~L~eDV 63 (159)
+..|..||..+.--+ ..+++++|...+.+.
T Consensus 57 ~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~f 91 (92)
T PF01388_consen 57 NKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLPF 91 (92)
T ss_dssp HTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHHH
T ss_pred cchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHhh
Confidence 356999999995322 478999999887653
No 52
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=53.82 E-value=63 Score=29.41 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
...||..|.+.+-++|..- --...| |. .-||..|||+|..|++.--+.|-.-|.+
T Consensus 21 p~~Ws~rEkr~Llr~Lqar--~g~~ep----d~-ael~~~l~~Rs~aEI~~fl~~LK~rvar 75 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQAR--RGQPEP----DA-AELAKELPGRSEAEIRDFLQQLKGRVAR 75 (344)
T ss_pred cccCcHHHHHHHHHHHHHh--cCCCCc----CH-HHHHhhccCcCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999866 322134 44 3489999999999999888888776643
No 53
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=52.69 E-value=30 Score=28.02 Aligned_cols=45 Identities=16% Similarity=0.372 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 10 EEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 10 eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
++.-+|+-.||.+.++ -+---+-.=..||.++-|||++|++..|.
T Consensus 96 d~~tLfdli~AAnyLd---i~gLl~~~ck~va~mikgktpeEir~~f~ 140 (162)
T KOG1724|consen 96 DQGTLFDLILAANYLD---IKGLLDLTCKTVANMIKGKTPEEIREIFN 140 (162)
T ss_pred CHHHHHHHHHHhhhcc---cHHHHHHHHHHHHHHHccCCHHHHHHHcC
Confidence 4678999999998433 22001122368999999999999998864
No 54
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=50.12 E-value=23 Score=34.38 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHh------hhccc---------CCCChHH---HhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIA------MHCIE---------EDDSKEE---QQQQWQKIASMVPSRSVEELKQHYQILLE 61 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa------~~~~~---------~~~~p~~---~~drWekIA~~VPGKT~~ev~~hY~~L~e 61 (159)
...||.+|...+-.++. +. | .. +|+. -.=.|--|++++..++..+|+.+|..|+-
T Consensus 436 r~~Ws~eEe~~Llk~V~~~~~~~~q--~q~~n~~~~~q~-sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~ 508 (607)
T KOG0051|consen 436 RGAWSIEEEEKLLKTVNEMIREALQ--PQASNTDTGLQE-SPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTT 508 (607)
T ss_pred cCcchHHHHHHHHHHHHHHHHHhhc--ccccccchhhhc-CccccccCCcchhhhhHhhcCCCcchHHHHHHHHHh
Confidence 45799999877666662 22 2 11 2200 11369999999999999999999988763
No 55
>smart00426 TEA TEA domain.
Probab=49.14 E-value=24 Score=25.17 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEED 27 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~ 27 (159)
...|+.+=..+|..||+.| |+.
T Consensus 3 ~~vWp~~lE~Af~~aL~~~--~~~ 24 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIY--PPC 24 (68)
T ss_pred CCcCcHHHHHHHHHHHHHc--Ccc
Confidence 5689999999999999999 765
No 56
>cd08308 Death_Tube Death domain of Tube. Death domains (DDs) similar to the DD in the protein Tube from Drosophila melanogaster. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and also in mediating innate immune response to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Some members of this subfamily contain a C-terminal kinase domain, like Pelle, in addition to the DD. Tube has no counterpart in vertebrates. It contains an N-terminal DD and a C-terminal region with five copies of the Tube repeat, an 8-amino acid motif. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (D
Probab=48.99 E-value=5.8 Score=31.14 Aligned_cols=31 Identities=26% Similarity=0.582 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCCCHHH--HHHHHHHHHHHHHHHHh
Q 031444 35 QQWQKIASMVPSRSVEE--LKQHYQILLEDVNAIEA 68 (159)
Q Consensus 35 drWekIA~~VPGKT~~e--v~~hY~~L~eDV~~IEs 68 (159)
+.|.++|..||- ...+ ...+|. .++|+.||.
T Consensus 23 d~Wk~L~~~Ip~-~~~~~~~~~~Y~--~~hv~~ie~ 55 (125)
T cd08308 23 DGWKKLMAIIPS-DDDDFNNLAKYN--AEHFKLIEQ 55 (125)
T ss_pred ccHHHHHHhcCC-cccccccccccC--HHHHHHHHH
Confidence 899999999994 3334 334443 447777776
No 57
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=48.96 E-value=60 Score=27.69 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC--CCCHHHHHHHHHHHHHHH
Q 031444 10 EEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP--SRSVEELKQHYQILLEDV 63 (159)
Q Consensus 10 eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP--GKT~~ev~~hY~~L~eDV 63 (159)
++.++|...++.|=+|++ |.|+++-|=..|++++- -+++.++...-..|.+-+
T Consensus 79 kD~eAf~~im~AyKlPK~-teEEK~~R~~~lQ~Alk~Aa~vP~~ia~~~~~~l~l~ 133 (208)
T COG3404 79 KDEEAFNLIMAAYKLPKS-TEEEKAARRKALQNALKEAAKVPLDIATLMVDLLELL 133 (208)
T ss_pred hHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 578899999999999999 99999999999988754 356666666655555544
No 58
>PLN03162 golden-2 like transcription factor; Provisional
Probab=46.50 E-value=21 Score=33.44 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.5
Q ss_pred chhhhcCCCCCCHHHHHHHHHHHHHHhh
Q 031444 126 SEQERRKGIPWTEEEHRQIWKRRLEKHF 153 (159)
Q Consensus 126 ~~~~rkkg~pWteeEHr~fl~g~l~k~g 153 (159)
....+|..+-||.|=|+.|+.. ++++|
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeA-V~qLG 256 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHA-VEQLG 256 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHH-HHHhC
Confidence 3446778899999999999999 99988
No 59
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=44.17 E-value=13 Score=35.40 Aligned_cols=42 Identities=21% Similarity=0.526 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHY 56 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY 56 (159)
..|++.||-..-.+...| .| +.|.+||+.++-++..+|+.|-
T Consensus 21 gsw~~~EDe~l~~~vk~l------~~----nnws~vas~~~~~~~kq~~~rw 62 (512)
T COG5147 21 GSWKRTEDEDLKALVKKL------GP----NNWSKVASLLISSTGKQSSNRW 62 (512)
T ss_pred CCCCCcchhHHHHHHhhc------cc----ccHHHHHHHhcccccccccchh
Confidence 479999999888888888 56 7899999999989999999876
No 60
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=44.03 E-value=40 Score=22.44 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=33.0
Q ss_pred HHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 14 AFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 14 ~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
.|..+|..++.+.+ .......++..+.. ++.|+.+-..+|..|...+.
T Consensus 31 ~~~~~~~~~f~~~~-~~~~~~~~l~~l~Q--~~esv~~y~~rf~~l~~~~~ 78 (96)
T PF03732_consen 31 EFKDAFRKRFFPPD-RKEQARQELNSLRQ--GNESVREYVNRFRELARRAP 78 (96)
T ss_pred HHHHHHHHHHhhhh-ccccchhhhhhhhc--cCCcHHHHHHHHHHHHHHCC
Confidence 45555555544544 44334466777664 89999999999999988764
No 61
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=43.40 E-value=36 Score=25.04 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 9 REEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 9 ~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..|...|++||... -.+ .. ..-+++...++.... ++.+-|..|++|=
T Consensus 34 ~~E~~rl~~Al~~~--~~e-L~----~l~~~~~~~~~~~~a-~If~ah~~~L~D~ 80 (123)
T PF05524_consen 34 EAEIERLEQALEKA--REE-LE----QLAERAESKLGEEEA-AIFEAHLMMLEDP 80 (123)
T ss_dssp HHHHHHHHHHHHHH--HHH-HH----HHHHHHHHHCHSSCT-HHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHH--HHH-HH----HHHHHHHHhccccHH-HHHHHHHHHhcCH
Confidence 46889999999999 322 21 344555556765555 9999999999994
No 62
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=42.17 E-value=1.3e+02 Score=25.23 Aligned_cols=51 Identities=24% Similarity=0.470 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC-----CCCCHHHHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV-----PSRSVEELKQHYQILLE 61 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V-----PGKT~~ev~~hY~~L~e 61 (159)
+...||.+|+.++-+..... .. +. +.+++|=..= +++|+.++..||+.|..
T Consensus 72 ~kalfS~~EE~lL~~v~s~~--~p--~l----e~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkq 127 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSS--QP--SL----ETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQ 127 (199)
T ss_pred ccCCCCHHHHHHHHhhhhcc--CC--cH----HHHHHHHHhChhhhccccCHHHHHHHHHHHHH
Confidence 34679999999988866555 33 34 6777775433 48999999999996543
No 63
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=41.39 E-value=83 Score=25.41 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 7 WSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 7 WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
.+..|.++|-+|+-.| .-+ . -.|.-+...+.+||.++++..-.....-+
T Consensus 41 Fn~rQR~~Fln~vMR~--G~~-~-----f~~~w~~~~Lr~Ks~~ei~aY~~LFm~HL 89 (145)
T PF06461_consen 41 FNPRQRKAFLNAVMRY--GMG-A-----FDWKWFVPRLRGKSEKEIRAYGSLFMRHL 89 (145)
T ss_pred cCHHHHHHHHHHHHHH--CcC-c-----ccchHHhhhhccccHHHHHHHHHHHHHHh
Confidence 5788999999999999 654 2 35666677789999999887655444444
No 64
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=41.02 E-value=48 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=24.1
Q ss_pred HHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSR-----SVEELKQHYQILLEDVNA 65 (159)
Q Consensus 35 drWekIA~~VPGK-----T~~ev~~hY~~L~eDV~~ 65 (159)
+.|..||..+.-. ....++.+|...+.....
T Consensus 54 ~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~yE~ 89 (93)
T smart00501 54 KKWKEIARELGIPDTSTSAASSLRKHYERYLLPFER 89 (93)
T ss_pred CCHHHHHHHhCCCcccchHHHHHHHHHHHHhHHHHH
Confidence 6899999998633 267899999988776543
No 65
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=40.27 E-value=52 Score=24.38 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
..|+.-|. +-|||.+|..+-|-.||+.+..
T Consensus 54 ~K~eAW~~-LKGksqedA~qeYialVeeLka 83 (87)
T COG4281 54 YKYEAWAG-LKGKSQEDARQEYIALVEELKA 83 (87)
T ss_pred hhHHHHhh-ccCccHHHHHHHHHHHHHHHHh
Confidence 45777775 5799999999999999998864
No 66
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=39.95 E-value=90 Score=19.23 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
..+|.++...+|...... +-- +. ..=+.||..+ |-|..+|..=|..
T Consensus 5 ~~~~~~~~~~Le~~f~~~--~~P-~~----~~~~~la~~~-~l~~~qV~~WF~n 50 (59)
T cd00086 5 TRFTPEQLEELEKEFEKN--PYP-SR----EEREELAKEL-GLTERQVKIWFQN 50 (59)
T ss_pred CcCCHHHHHHHHHHHHhC--CCC-CH----HHHHHHHHHH-CcCHHHHHHHHHH
Confidence 568999999999999988 654 45 6678999987 7999999987764
No 67
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=39.21 E-value=22 Score=33.22 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCC--CChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEED--DSKEEQQQQWQKIASMVP-SRSVEELKQHYQILLEDV 63 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~--~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L~eDV 63 (159)
...||.+|---+=..-..| +-- -.- |||++-. .+ .||++|+++||-..+.-+
T Consensus 130 dn~WskeETD~LF~lck~f--DLRf~VIa----DRyd~qq--~~~sRTvEdLKeRyY~v~r~l 184 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRF--DLRFFVIA----DRYDNQQ--YKKSRTVEDLKERYYSVCRKL 184 (445)
T ss_pred cccccHHHHHHHHHHHHhc--CeeEEEEe----eccchhh--ccccccHHHHHHHHHHHHHHH
Confidence 3579999855444444566 210 012 4554432 55 499999999998766554
No 68
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=38.79 E-value=33 Score=24.16 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.6
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
..+|+.-- .+.|.|.+|.++.|-.|++++.
T Consensus 54 ~~K~~AW~-~l~gms~~eA~~~Yi~~v~~~~ 83 (87)
T PF00887_consen 54 RAKWDAWK-ALKGMSKEEAMREYIELVEELI 83 (87)
T ss_dssp HHHHHHHH-TTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HccCCCHHHHHHHHHHHHHHHH
Confidence 34566544 3589999999999999999874
No 69
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=37.78 E-value=64 Score=16.91 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhcccCCCChHHHhHHHHHHHHh
Q 031444 12 DKAFENAIAMHCIEEDDSKEEQQQQWQKIASM 43 (159)
Q Consensus 12 dK~FE~ALa~~~~~~~~~p~~~~drWekIA~~ 43 (159)
.++||+||..+ |. ++ +-|..-+..
T Consensus 7 r~i~e~~l~~~--~~--~~----~~W~~y~~~ 30 (33)
T smart00386 7 RKIYERALEKF--PK--SV----ELWLKYAEF 30 (33)
T ss_pred HHHHHHHHHHC--CC--Ch----HHHHHHHHH
Confidence 56899999999 84 57 789876654
No 70
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=37.56 E-value=56 Score=22.22 Aligned_cols=32 Identities=22% Similarity=0.594 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHHH
Q 031444 36 QWQKIASMVPSRSVE------ELKQHYQILLEDVNAIE 67 (159)
Q Consensus 36 rWekIA~~VPGKT~~------ev~~hY~~L~eDV~~IE 67 (159)
.|+++|..||..+.. ...++|...+.|-..|.
T Consensus 2 yW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~ 39 (60)
T PF14775_consen 2 YWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALI 39 (60)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999976543 44567776666655543
No 71
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=37.43 E-value=58 Score=27.36 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC---CCCHHHHHHHHHHHHHH
Q 031444 6 TWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP---SRSVEELKQHYQILLED 62 (159)
Q Consensus 6 ~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP---GKT~~ev~~hY~~L~eD 62 (159)
.|+..+|-++-+|+.+- ..-+-|+..|+ --|..||.+|+..|+.|
T Consensus 1 rW~~~DDl~Li~av~~~------------~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd 48 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQT------------NDLESVHLGVKFSCKFTLQEIEERWYALLYD 48 (199)
T ss_pred CCCchhhHHHHHHHHHh------------cCHHHHHccCCcCCcCcHHHHHHHHHHHHcC
Confidence 49999999999999887 23478888887 57999999999999876
No 72
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.29 E-value=26 Score=26.16 Aligned_cols=14 Identities=21% Similarity=0.484 Sum_probs=11.7
Q ss_pred HHHHHHHHhCCCCC
Q 031444 35 QQWQKIASMVPSRS 48 (159)
Q Consensus 35 drWekIA~~VPGKT 48 (159)
+.|.++|..|++=|
T Consensus 22 ~~W~~LA~~i~~ys 35 (97)
T cd08307 22 NVWEELAFVMMGYS 35 (97)
T ss_pred CcHHHHHHHHhcCC
Confidence 89999999997433
No 73
>PF07030 DUF1320: Protein of unknown function (DUF1320); InterPro: IPR009752 This entry is represented by the Bacteriophage Mu, Gp36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.06 E-value=73 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 031444 49 VEELKQHYQILLEDVNAIEAGNIPLPNY 76 (159)
Q Consensus 49 ~~ev~~hY~~L~eDV~~IEsG~vplP~y 76 (159)
.++++++|+.-+.-++.|-+|.+.|+-=
T Consensus 84 ~e~~~~rY~~A~~~L~~ia~G~~~L~~~ 111 (130)
T PF07030_consen 84 TEPVRERYKDAIKWLEDIAKGKISLGLP 111 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCccCCCC
Confidence 8899999999999999999999887544
No 74
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=36.05 E-value=51 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
..|+.-. .+.|.|.+|.++.|-.|++.+.
T Consensus 53 ~K~~AW~-~l~~ms~~eA~~~YV~~~~~l~ 81 (85)
T cd00435 53 AKWDAWN-SLKGMSKEDAMKAYIAKVEELI 81 (85)
T ss_pred HHHHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 3455444 3689999999999999999874
No 75
>PF10124 Mu-like_gpT: Mu-like prophage major head subunit gpT; InterPro: IPR018774 This entry represents a conserved domain found in various caudoviral prophage proteins, including the bacteriophage Mu major head subunit GpT and related prophage.
Probab=34.74 E-value=12 Score=33.19 Aligned_cols=30 Identities=33% Similarity=0.608 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHH
Q 031444 12 DKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEEL 52 (159)
Q Consensus 12 dK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev 52 (159)
++.|.+||... + ..|++||..||.-|..+-
T Consensus 9 ~~~F~~~l~~a--~---------~~~~~iA~~VpStt~~n~ 38 (291)
T PF10124_consen 9 KTAFQKGLEAA--P---------PQWNKIATEVPSTTASNT 38 (291)
T ss_pred HHHHHHHHhhC--C---------ChhheEEEEccCCCCccc
Confidence 57899999998 3 489999999998777654
No 76
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=34.64 E-value=1.2e+02 Score=18.99 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
..+|.++-+.+|...... +-- +. ..-+.||..+ |-|..+|..=|+.
T Consensus 5 ~~~t~~q~~~L~~~f~~~--~~p-~~----~~~~~la~~l-~l~~~~V~~WF~n 50 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQEN--PYP-SK----EEREELAKEL-GLTERQVKNWFQN 50 (57)
T ss_dssp SSSSHHHHHHHHHHHHHS--SSC-HH----HHHHHHHHHH-TSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--ccc-cc----cccccccccc-cccccccccCHHH
Confidence 458899999999998887 543 44 6789999988 8999999877764
No 77
>PTZ00458 acyl CoA binding protein; Provisional
Probab=34.20 E-value=57 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.272 Sum_probs=21.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 37 WQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 37 WekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
|+.-. .+.|-|.+|.+++|-.|++++.
T Consensus 57 w~AW~-~l~~ms~~eA~~~YI~l~~~l~ 83 (90)
T PTZ00458 57 YEAWK-SIENLNREDAKKRYVEIVTELF 83 (90)
T ss_pred HHHHH-HcCCCCHHHHHHHHHHHHHHHh
Confidence 44333 3589999999999999999873
No 78
>PF05263 DUF722: Protein of unknown function (DUF722); InterPro: IPR007927 This entry is represented by Bacteriophage bIL285, Orf38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=34.02 E-value=1.1e+02 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
.-|..||..+ ..+...|++.|...-++|.
T Consensus 100 ~TW~~IA~~l-~i~erta~r~~~~fK~~i~ 128 (130)
T PF05263_consen 100 RTWYQIAQKL-HISERTARRWRDRFKNDIY 128 (130)
T ss_pred chHHHHHHHh-CccHHHHHHHHHHHHHHhc
Confidence 5799999998 5999999999999888875
No 79
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=30.71 E-value=1.1e+02 Score=28.75 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCC-----hHHH--hHHHHHHHHhCC---C--CCHHHHHHHHHHHHHH-HHHHHhCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDS-----KEEQ--QQQWQKIASMVP---S--RSVEELKQHYQILLED-VNAIEAGN 70 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~-----p~~~--~drWekIA~~VP---G--KT~~ev~~hY~~L~eD-V~~IEsG~ 70 (159)
...|+.+=+..|-.|||.| |+-+. ..+. -.|=|.||..+- | ||.+||-.|-+-|..- ++.|.+.+
T Consensus 76 egvWSpdIEqsFqEALaiy--ppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq~kl 153 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIY--PPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQAKL 153 (455)
T ss_pred ccccChhHHHHHHHHHhhc--CCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3579999999999999999 87531 0000 146788998875 4 6789999999988654 35566554
Q ss_pred C
Q 031444 71 I 71 (159)
Q Consensus 71 v 71 (159)
-
T Consensus 154 k 154 (455)
T KOG3841|consen 154 K 154 (455)
T ss_pred h
Confidence 4
No 80
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=29.81 E-value=56 Score=30.26 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChH---HHh--HHHHHHHHhCC---C--CCHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKE---EQQ--QQWQKIASMVP---S--RSVEELKQHYQIL 59 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~---~~~--drWekIA~~VP---G--KT~~ev~~hY~~L 59 (159)
...|+.+=..+|..||+.| |+.+.-+ +.+ .|=+-||..|- | +|.+||--|.+.|
T Consensus 49 ~~vw~~~~e~af~~al~~~--~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 49 EGVWPPDIEQAFQEALAIY--PPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp S--S-HHHHHHHHHHHHHS---SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhC--CCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 4679999999999999999 7763311 111 22356777664 3 7899999999999
No 81
>TIGR02293 TAS_TIGR02293 putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module.
Probab=29.64 E-value=1.3e+02 Score=22.86 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcccCCCChHHHhHHHHHHHH-hCCCCCHHHHHH---HHHHHHHHHHHHHhCCC
Q 031444 13 KAFENAIAMHCIEEDDSKEEQQQQWQKIAS-MVPSRSVEELKQ---HYQILLEDVNAIEAGNI 71 (159)
Q Consensus 13 K~FE~ALa~~~~~~~~~p~~~~drWekIA~-~VPGKT~~ev~~---hY~~L~eDV~~IEsG~v 71 (159)
+++..|...| +.+ +.-.+|-+=.. .+.|+|+-|+.. -.+...+=+.+||.|.+
T Consensus 76 ri~~~a~~vf--g~~----~~a~~WL~~Pn~~lgg~~Pldll~t~~G~~~V~~~L~rie~G~~ 132 (133)
T TIGR02293 76 RVWKAAVDVF--GGD----AEARQWLFRPVPGLGNRRPIDLLLTEAGAEIVEDLLGRLEYGVY 132 (133)
T ss_pred HHHHHHHHHH--CCH----HHHHHHHhCcHHhhCCCCHHHHHcCHHHHHHHHHHHHHHHcCCC
Confidence 4567777888 543 22267854333 377999999982 23344444588999865
No 82
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=29.09 E-value=63 Score=20.96 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 031444 45 PSRSVEELKQHYQILLEDVNAIEAGNIPLPNY 76 (159)
Q Consensus 45 PGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y 76 (159)
-|.|..|+-++-..=..-|..||.|..+.|..
T Consensus 13 ~gls~~~lA~~~g~s~s~v~~iE~G~~~~p~~ 44 (64)
T PF13560_consen 13 AGLSQAQLADRLGVSQSTVSRIERGRRPRPSP 44 (64)
T ss_dssp HTS-HHHHHHHHTS-HHHHHHHHTTSSSS-BH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCH
Confidence 37788888888888888999999999875543
No 83
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=83 Score=28.53 Aligned_cols=58 Identities=17% Similarity=0.267 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCC-----CCHHHHHHHHHHHHHHHHHHHhC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPS-----RSVEELKQHYQILLEDVNAIEAG 69 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPG-----KT~~ev~~hY~~L~eDV~~IEsG 69 (159)
.+.|++++--..+.+++++ .+ .+.+++|+-+|+.+-+ |+..||++.-+. -+-+.|-..
T Consensus 245 ~rkWereagar~~a~aa~k--~k----ae~k~kae~ea~a~asa~a~kkkaKE~~kka~k--~~Kk~ikna 307 (379)
T COG5269 245 IRKWEREAGARLKALAALK--GK----AEAKNKAEIEAEALASATAVKKKAKEVMKKALK--MEKKAIKNA 307 (379)
T ss_pred HhccchhhhhhHHHHHHHh--hh----hHHHhHHHHHHHHhhhhHHHHHhHHHHHHHHHH--HHHHHHHhh
Confidence 4679999999999999999 54 3456999999887764 556677765443 344445443
No 84
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=28.32 E-value=1.5e+02 Score=24.04 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 10 EEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 10 eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
+|..+||-.||.-.+.- ++--+--=.-||.++-|||++|+++-|.
T Consensus 91 DqemL~eI~laaNYL~i---kpLLd~gCKivaemirgkSpeeir~tfn 135 (158)
T COG5201 91 DQEMLLEICLAANYLEI---KPLLDLGCKIVAEMIRGKSPEEIRETFN 135 (158)
T ss_pred hHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHccCCHHHHHHHhC
Confidence 57788999888764332 2111122357899999999999998775
No 85
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=28.13 E-value=73 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
..+..||..| |.|...|.+|-+.|+++
T Consensus 23 ~~~~eia~~l-glS~~~v~~Ri~~L~~~ 49 (154)
T COG1522 23 ISNAELAERV-GLSPSTVLRRIKRLEEE 49 (154)
T ss_pred CCHHHHHHHH-CCCHHHHHHHHHHHHHC
Confidence 5578999998 79999999999998754
No 86
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=27.99 E-value=57 Score=28.18 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLE 61 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~e 61 (159)
||+|+=...|-+.+...+++||..|..
T Consensus 171 nrlE~eV~~i~~~~~~~l~rHy~~L~~ 197 (237)
T PF13748_consen 171 NRLEKEVDIIERRKPASLRRHYRRLSR 197 (237)
T ss_pred HHHHHHccHhhcCChHHHHHHHHHHHh
Confidence 899999999999999999999998754
No 87
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=27.10 E-value=1.4e+02 Score=22.89 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031444 11 EDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLE 61 (159)
Q Consensus 11 EdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~e 61 (159)
-|+..-.+|.+- +. -.|..||..+ |-|...|.+|++.|.+
T Consensus 10 ~D~~Il~~Lq~d--~R--------~s~~eiA~~l-glS~~tV~~Ri~rL~~ 49 (153)
T PRK11179 10 LDRGILEALMEN--AR--------TPYAELAKQF-GVSPGTIHVRVEKMKQ 49 (153)
T ss_pred HHHHHHHHHHHc--CC--------CCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455555666655 33 4579999998 8999999999999864
No 88
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=27.07 E-value=34 Score=32.66 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
-+||.+|--+-|.| ++.||-.|.+|
T Consensus 280 k~WS~qE~~LLLEG-Ie~ygDdW~kV 304 (531)
T COG5259 280 KNWSRQELLLLLEG-IEMYGDDWDKV 304 (531)
T ss_pred ccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 49999999999999 99999988653
No 89
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=26.04 E-value=72 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.105 Sum_probs=16.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc
Q 031444 133 GIPWTEEEHRQIWKRRLEKHFK 154 (159)
Q Consensus 133 g~pWteeEHr~fl~g~l~k~gk 154 (159)
+..+|+||-|.-|.- |.+||=
T Consensus 49 ~k~yseeEDRfLl~~-~~~~G~ 69 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCM-LYKYGY 69 (118)
T ss_dssp -SSS-HHHHHHHHHH-HHHHTT
T ss_pred CCCcCcHHHHHHHHH-HHHhCC
Confidence 448999999988888 999996
No 90
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=25.97 E-value=83 Score=18.84 Aligned_cols=23 Identities=22% Similarity=0.670 Sum_probs=17.6
Q ss_pred HHHHHHHHhhhcccCCCChHHHhHHHHHHHH
Q 031444 12 DKAFENAIAMHCIEEDDSKEEQQQQWQKIAS 42 (159)
Q Consensus 12 dK~FE~ALa~~~~~~~~~p~~~~drWekIA~ 42 (159)
.++|+.+|+.+ |.+ + +-|...|.
T Consensus 21 ~~~~~~~l~~~--P~~--~----~a~~~La~ 43 (44)
T PF13428_consen 21 ERLLRRALALD--PDD--P----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHC--cCC--H----HHHHHhhh
Confidence 57899999999 875 6 67776653
No 91
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=25.94 E-value=72 Score=30.98 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=38.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
....||..+-.+|..||.++ ..+ .--|++..|+++..+|+.-|..
T Consensus 408 ~~~~w~~se~e~fyka~~~~--gs~---------~slis~l~p~R~rk~iK~K~~~ 452 (584)
T KOG2009|consen 408 ETDKWDASETELFYKALSER--GSD---------FSLISNLFPLRDRKQIKAKFKK 452 (584)
T ss_pred ccCcccchhhHHhhhHHhhh--ccc---------ccccccccccccHHHHHHHHhh
Confidence 35689999999999999999 644 2579999999999999988863
No 92
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=25.77 E-value=85 Score=23.36 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=24.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 031444 37 WQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYV 77 (159)
Q Consensus 37 WekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~ 77 (159)
-++.|.+| |||..-|+. .|++|..|+=...
T Consensus 15 ~~~FA~~I-GKt~sAVr~----------Mi~~gKLP~i~~~ 44 (87)
T PF10743_consen 15 YEKFAEYI-GKTPSAVRK----------MIKAGKLPVIEMR 44 (87)
T ss_pred HHHHHHHH-CCCHHHHHH----------HHHcCCCCeEecc
Confidence 48999988 899998864 5899999876664
No 93
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.34 E-value=3.1e+02 Score=21.36 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=33.9
Q ss_pred HHHHHHHHHH----HhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Q 031444 9 REEDKAFENA----IAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEA 68 (159)
Q Consensus 9 ~eEdK~FE~A----La~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEs 68 (159)
-|+-|++|.+ .++| -.-..||+-|.||+ .++-..|+.|.-.+..|++
T Consensus 50 iEdYKLLEeMNkaTaakY------------~DMk~iAEkla~k~-deLn~KfenL~P~lqQIDa 100 (120)
T KOG4559|consen 50 IEDYKLLEEMNKATAAKY------------KDMKQIAEKLAGKL-DELNLKFENLAPMLQQIDA 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHccch-HHHHHHHHHHHHHHHHHHH
Confidence 4667777765 4445 23368999998765 7899999999877777765
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=25.23 E-value=2.1e+02 Score=29.64 Aligned_cols=51 Identities=16% Similarity=0.297 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC------------CCCCHHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV------------PSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V------------PGKT~~ev~~hY~~L~eDV~ 64 (159)
...+|.+||+.+-.+|..| . - ++|++|-..| -.+|+.|+.+|...|+.-|.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~--g----~----~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~~ 988 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKL--G----Y----GNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLIE 988 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHh--c----c----chHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHHH
Confidence 4569999999999999999 4 3 5799996654 27999999999999988773
No 95
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=24.49 E-value=1.2e+02 Score=23.63 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
-.|..||..| |-|..-|.+|++.|+++
T Consensus 29 ~s~~eiA~~l-glS~~tv~~Ri~rL~~~ 55 (164)
T PRK11169 29 ISNVELSKRV-GLSPTPCLERVRRLERQ 55 (164)
T ss_pred CCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 4679999998 89999999999998753
No 96
>PF00557 Peptidase_M24: Metallopeptidase family M24 This Prosite entry corresponds to sub-family M24B This Prosite entry corresponds to sub-families M24A and M24C; InterPro: IPR000994 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains proteins that belong to MEROPS peptidase family M24 (clan MG), which share a common structural-fold, the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. The entry also contains proteins that have lost catalytic activity, for example Spt16, which is a component of the FACT complex. The crystal structure of the N-terminal domain of Spt16, determined to 2.1A, reveals an aminopeptidase P fold whose enzymatic activity has been lost. This fold binds directly to histones H3-H4 through a interaction with their globular core domains, as well as with their N-terminal tails []. The FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p (P32558 from SWISSPROT, IPR013953 from INTERPRO) and Pob3p (Q04636 from SWISSPROT, IPR000969 from INTERPRO). The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, , ]. ; GO: 0009987 cellular process; PDB: 4A6V_B 4A6W_A 3CTZ_A 3IG4_B 2B3H_A 2NQ6_A 2NQ7_A 2GZ5_A 2G6P_A 2B3L_A ....
Probab=24.32 E-value=2.1e+02 Score=22.17 Aligned_cols=42 Identities=19% Similarity=0.318 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 8 SREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 8 T~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
|.++.++++.++..+ + .-|+..-||.|..||-+.+...+++.
T Consensus 101 ~~~~~~~~~~~~~~~------------~--~~~~~~~pG~~~~~v~~~~~~~~~~~ 142 (207)
T PF00557_consen 101 TPEQRRAYEAAREAL------------E--AAIEALRPGVTGSDVYEAVREVLEEY 142 (207)
T ss_dssp HHHHHHHHHHHHHHH------------H--HHHHH-STTSBHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhHHHH------------H--hHhhhcccccccchhhHHHHHHHHhh
Confidence 457788899888888 2 34566779999999999998888764
No 97
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=24.12 E-value=1.3e+02 Score=18.81 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 031444 12 DKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQILLE 61 (159)
Q Consensus 12 dK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L~e 61 (159)
.+.|+.+|..+ |.+ + +-|-..+.+.- -+-..+....|+.+++
T Consensus 17 ~~~~~~~l~~~--P~~--~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 17 IAAFEQALKQD--PDN--P----EAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCCS--TTH--H----HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCC--H----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35788888888 764 5 66766665443 4566666788877653
No 98
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=24.02 E-value=88 Score=26.65 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=20.6
Q ss_pred HHHHhC--CCCCHHHHHHHHHHHHHHHH
Q 031444 39 KIASMV--PSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 39 kIA~~V--PGKT~~ev~~hY~~L~eDV~ 64 (159)
-||.++ ++.|+.||.+.|..+..+|-
T Consensus 54 iiA~~l~~~~~t~~e~~~~y~~~~~~iF 81 (309)
T cd07216 54 LIAIMLGRLRMTVDECIDAYTRLAKKIF 81 (309)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHhHHhC
Confidence 366666 47899999999999887773
No 99
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=22.60 E-value=2e+02 Score=17.62 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
..+|.++..++|.+.... +-- +. ..=+.||..+ |-|..+|..=|..
T Consensus 5 ~~~~~~~~~~L~~~f~~~--~~P-~~----~~~~~la~~~-~l~~~qV~~WF~n 50 (56)
T smart00389 5 TSFTPEQLEELEKEFQKN--PYP-SR----EEREELAAKL-GLSERQVKVWFQN 50 (56)
T ss_pred CcCCHHHHHHHHHHHHhC--CCC-CH----HHHHHHHHHH-CcCHHHHHHhHHH
Confidence 458999999999999988 533 44 5668889887 8999998876654
No 100
>PLN03162 golden-2 like transcription factor; Provisional
Probab=22.51 E-value=2.6e+02 Score=26.42 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhhccc-CCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIE-EDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAI 66 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~-~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~I 66 (159)
-.||.+=.+.|..|+.+. . +..+| .+=-++= .|+|-|...|+.|-|...--.+.+
T Consensus 238 LrWTpELH~rFVeAV~qL--G~dKATP----K~ILelM-nV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 238 VDWTPELHRRFVHAVEQL--GVEKAFP----SRILELM-GVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred ccCCHHHHHHHHHHHHHh--CcCccch----HHHHHHc-CCCCcCHHHHHHHHHHHHHhcccc
Confidence 469999999999999999 5 33478 4433332 278999999999988877766543
No 101
>PF11827 DUF3347: Protein of unknown function (DUF3347); InterPro: IPR021782 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 169 to 570 amino acids in length.
Probab=22.48 E-value=4e+02 Score=21.33 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC
Q 031444 11 EDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAG 69 (159)
Q Consensus 11 EdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG 69 (159)
.-+.|..+|... +.......+...|..++..+-....+.-|+||..|-+++..|=..
T Consensus 71 aA~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~di~~qR~~F~~lS~~~~~l~~~ 127 (174)
T PF11827_consen 71 AAKALLAALKAV--DMAELSASLAKALMEAAEDAKEHDIEHQREAFESLSEAMIDLVKA 127 (174)
T ss_pred HHHHHHHHHHhc--ccccccHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888887 543233344566777776655559999999999999998776554
No 102
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=22.17 E-value=42 Score=33.15 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccccc
Q 031444 133 GIPWTEEEHRQIWKRRLEKHFKKFCD 158 (159)
Q Consensus 133 g~pWteeEHr~fl~g~l~k~gk~~~~ 158 (159)
-..||-.|-.-|.-+ |+.+||.|-.
T Consensus 88 ktaWt~~E~~~Ffda-l~~~GKdFe~ 112 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDA-LRQVGKDFEK 112 (782)
T ss_pred ccccchhhHHHHHHH-HHHhcccHHH
Confidence 348999999999999 9999999964
No 103
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=22.14 E-value=70 Score=29.14 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
..|+.||..||--|..=+.+|+.....|+.
T Consensus 316 ~~~~~ia~lVP~tTl~Yl~~~~a~~~~~~~ 345 (352)
T COG3053 316 NDLEAIANLVPATTLNYLQQHLAEHIIDIA 345 (352)
T ss_pred CCHHHHHhhCcHHHHHHHHHHHHHhHHHHh
Confidence 689999999998888888899988887764
No 104
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=22.08 E-value=1e+02 Score=18.82 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 031444 45 PSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 45 PGKT~~ev~~hY~~L~eDV 63 (159)
++-|.++|+++|..|+.-.
T Consensus 10 ~~~~~~~ik~~y~~l~~~~ 28 (55)
T cd06257 10 PDASDEEIKKAYRKLALKY 28 (55)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 4678999999999997643
No 105
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=21.61 E-value=48 Score=31.61 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcccccC
Q 031444 135 PWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
-||-|+--||=.- .+-|||.|.+|
T Consensus 189 ~WT~Ed~vlFe~a-F~~~GK~F~kI 212 (534)
T KOG1194|consen 189 EWTAEDIVLFEQA-FQFFGKDFHKI 212 (534)
T ss_pred cchHHHHHHHHHH-HHHhcccHHHH
Confidence 3999999999999 99999999765
No 106
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=21.60 E-value=1.5e+02 Score=18.85 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=19.7
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHH
Q 031444 43 MVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 43 ~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
+++|+|.++-++-|+.|-+.+..
T Consensus 8 ~~~Grs~eqk~~l~~~it~~l~~ 30 (61)
T PRK02220 8 LIEGRTEEQLKALVKDVTAAVSK 30 (61)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999888864
No 107
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=21.48 E-value=1.7e+02 Score=20.63 Aligned_cols=12 Identities=25% Similarity=0.792 Sum_probs=7.4
Q ss_pred CCCCCHHHHHHH
Q 031444 4 AATWSREEDKAF 15 (159)
Q Consensus 4 ~~~WT~eEdK~F 15 (159)
...||.++|.++
T Consensus 47 ~GiWT~eDD~~L 58 (87)
T PF11626_consen 47 PGIWTPEDDEML 58 (87)
T ss_dssp TT---HHHHHHH
T ss_pred CCCcCHHHHHHH
Confidence 347999999988
No 108
>PF15508 NAAA-beta: beta subunit of N-acylethanolamine-hydrolyzing acid amidase
Probab=20.47 E-value=1.3e+02 Score=21.51 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=19.3
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
.+||..|+... .....++.+.|+.++..
T Consensus 15 ~eRw~~i~~~~-k~~i~~l~~~~~~~~~~ 42 (95)
T PF15508_consen 15 EERWVQIAKDY-KDEIRELIEVLKDLLQS 42 (95)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 49999999876 34555566666666554
No 109
>cd08796 Death_IRAK-M Death domain of Interleukin 1 Receptor Associated Kinase-M. Death Domain (DD) of Interleukin-1 Receptor-Associated Kinase M (IRAK-M). IRAKs are essential components of innate immunity and inflammation in mammals and other vertebrates. They are involved in signal transduction pathways involving IL-1 and IL-18 receptors, Toll-like receptors(TLRs), nuclear factor-kappaB (NF-kB), and mitogen-activated protein kinases (MAPKs). IRAKs contain an N-terminal DD domain and a C-terminal kinase domain. IRAK-M, also called IRAK-3, is an inactive kinase present only in macrophages in an inducible manner. It is a negative regulator of TLR signaling and it contributes to the attenuation of NF-kB activation. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=20.02 E-value=76 Score=23.36 Aligned_cols=11 Identities=18% Similarity=0.580 Sum_probs=10.0
Q ss_pred HHHHHHHHhCC
Q 031444 35 QQWQKIASMVP 45 (159)
Q Consensus 35 drWekIA~~VP 45 (159)
..|..+|+.|.
T Consensus 25 ~~W~~lA~~i~ 35 (89)
T cd08796 25 LGWRTLAERLS 35 (89)
T ss_pred ccHHHHHHHHh
Confidence 59999999997
Done!