Query 031444
Match_columns 159
No_of_seqs 177 out of 496
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cjj_A Radialis; plant develop 99.9 3.3E-25 1.1E-29 162.1 9.1 69 3-78 7-75 (93)
2 2cqq_A RSGI RUH-037, DNAJ homo 99.9 2.8E-25 9.6E-30 155.7 6.4 65 4-77 8-72 (72)
3 1wgx_A KIAA1903 protein; MYB D 99.8 5.5E-21 1.9E-25 134.9 5.1 55 1-62 5-59 (73)
4 4eef_G F-HB80.4, designed hema 99.8 1.5E-21 5.1E-26 138.4 -1.4 49 3-58 19-67 (74)
5 2cqr_A RSGI RUH-043, DNAJ homo 99.7 1.3E-18 4.5E-23 122.1 5.6 55 3-64 17-71 (73)
6 2yum_A ZZZ3 protein, zinc fing 99.4 2.7E-13 9.3E-18 93.4 6.7 63 5-77 9-73 (75)
7 2yus_A SWI/SNF-related matrix- 99.4 5.2E-14 1.8E-18 99.6 1.0 58 4-72 18-76 (79)
8 2k9n_A MYB24; R2R3 domain, DNA 99.3 1.6E-12 5.4E-17 94.8 6.8 77 5-159 2-78 (107)
9 1gv2_A C-MYB, MYB proto-oncoge 99.3 1.6E-12 5.6E-17 93.8 6.4 45 5-59 5-49 (105)
10 1ofc_X ISWI protein; nuclear p 99.3 1.9E-12 6.4E-17 111.5 5.2 111 5-154 111-232 (304)
11 1h8a_C AMV V-MYB, MYB transfor 99.3 4.6E-12 1.6E-16 94.6 6.4 45 5-59 28-72 (128)
12 3osg_A MYB21; transcription-DN 99.2 3.9E-11 1.3E-15 89.8 7.8 45 5-60 12-56 (126)
13 2din_A Cell division cycle 5-l 99.2 2.6E-11 8.9E-16 81.7 4.7 54 5-70 10-63 (66)
14 2eqr_A N-COR1, N-COR, nuclear 99.2 4.5E-11 1.5E-15 80.1 5.5 44 4-58 12-55 (61)
15 1x41_A Transcriptional adaptor 99.1 3.4E-11 1.1E-15 80.2 4.7 46 5-60 9-54 (60)
16 3zqc_A MYB3; transcription-DNA 99.1 3.5E-11 1.2E-15 90.4 4.7 46 5-60 3-48 (131)
17 1h89_C C-MYB, MYB proto-oncoge 99.1 7.8E-11 2.7E-15 90.6 6.4 77 5-159 59-135 (159)
18 2elk_A SPCC24B10.08C protein; 99.1 1.9E-10 6.5E-15 76.3 5.3 45 5-59 10-55 (58)
19 1guu_A C-MYB, MYB proto-oncoge 99.1 2.7E-10 9.1E-15 73.2 5.7 46 5-60 4-49 (52)
20 1gvd_A MYB proto-oncogene prot 99.0 4.1E-10 1.4E-14 72.4 4.6 46 5-60 4-49 (52)
21 2cu7_A KIAA1915 protein; nucle 99.0 6.2E-10 2.1E-14 76.3 5.6 49 4-63 9-57 (72)
22 2d9a_A B-MYB, MYB-related prot 99.0 6E-10 2E-14 73.6 4.8 46 5-60 9-54 (60)
23 1h89_C C-MYB, MYB proto-oncoge 98.9 1.6E-10 5.4E-15 88.9 0.9 45 5-59 7-51 (159)
24 2yqk_A Arginine-glutamic acid 98.9 3.4E-09 1.2E-13 71.6 6.4 43 4-57 9-52 (63)
25 1w0t_A Telomeric repeat bindin 98.8 5.9E-09 2E-13 67.4 6.1 46 5-60 3-50 (53)
26 2crg_A Metastasis associated p 98.8 6.1E-09 2.1E-13 71.8 6.3 43 4-57 8-51 (70)
27 2xag_B REST corepressor 1; ami 98.8 8.3E-10 2.8E-14 100.1 1.9 42 5-57 190-231 (482)
28 2dim_A Cell division cycle 5-l 98.8 3.9E-09 1.3E-13 71.7 4.7 46 5-60 10-55 (70)
29 3sjm_A Telomeric repeat-bindin 98.8 1.3E-08 4.3E-13 69.1 6.3 47 5-61 12-60 (64)
30 2eqr_A N-COR1, N-COR, nuclear 98.7 3.2E-09 1.1E-13 71.0 2.4 34 125-159 4-37 (61)
31 1gv2_A C-MYB, MYB proto-oncoge 98.7 1E-08 3.6E-13 73.7 4.9 46 4-60 56-101 (105)
32 1ity_A TRF1; helix-turn-helix, 98.7 3.1E-08 1.1E-12 67.1 6.1 48 4-61 10-59 (69)
33 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.7E-08 5.8E-13 73.3 5.1 51 4-65 53-103 (107)
34 3osg_A MYB21; transcription-DN 98.6 4.1E-08 1.4E-12 73.2 5.3 48 5-63 63-110 (126)
35 2ltp_A Nuclear receptor corepr 98.0 5.1E-09 1.7E-13 74.9 0.0 47 5-62 17-63 (89)
36 1h8a_C AMV V-MYB, MYB transfor 98.6 3.2E-08 1.1E-12 73.6 3.7 46 4-60 79-124 (128)
37 2iw5_B Protein corest, REST co 98.5 6.9E-08 2.4E-12 80.7 4.9 59 4-73 133-197 (235)
38 4a69_C Nuclear receptor corepr 98.5 1.7E-07 5.8E-12 67.9 6.1 42 5-57 44-85 (94)
39 2llk_A Cyclin-D-binding MYB-li 98.4 1.6E-07 5.4E-12 65.6 4.0 47 4-62 23-69 (73)
40 3zqc_A MYB3; transcription-DNA 98.3 3.2E-07 1.1E-11 68.7 3.7 47 5-62 55-101 (131)
41 2yqk_A Arginine-glutamic acid 98.3 2E-07 6.8E-12 62.8 1.9 29 130-159 6-34 (63)
42 2ckx_A NGTRF1, telomere bindin 98.2 3.2E-06 1.1E-10 60.2 5.9 46 6-61 2-51 (83)
43 4b4c_A Chromodomain-helicase-D 98.1 2.7E-05 9.1E-10 61.5 11.2 52 4-63 7-60 (211)
44 2crg_A Metastasis associated p 98.0 1.9E-06 6.4E-11 59.3 2.0 29 130-159 5-33 (70)
45 2xag_B REST corepressor 1; ami 97.9 1.5E-05 5.1E-10 72.4 6.0 44 4-58 380-423 (482)
46 2aje_A Telomere repeat-binding 97.8 2.5E-05 8.5E-10 57.9 5.2 47 5-61 14-64 (105)
47 1ug2_A 2610100B20RIK gene prod 97.8 5.1E-05 1.8E-09 55.7 6.4 51 5-63 34-84 (95)
48 2juh_A Telomere binding protei 97.7 4.1E-05 1.4E-09 58.1 4.8 48 5-62 18-69 (121)
49 2yus_A SWI/SNF-related matrix- 97.7 1.9E-05 6.3E-10 55.5 2.6 30 129-159 14-43 (79)
50 2roh_A RTBP1, telomere binding 97.7 5.2E-05 1.8E-09 57.6 5.2 47 5-61 32-82 (122)
51 2lr8_A CAsp8-associated protei 96.8 6.7E-06 2.3E-10 57.5 0.0 50 5-63 15-64 (70)
52 4a69_C Nuclear receptor corepr 97.5 2E-05 6.7E-10 57.0 1.2 32 127-159 37-68 (94)
53 1ign_A Protein (RAP1); RAP1,ye 97.5 6.3E-05 2.1E-09 63.3 4.3 52 5-62 9-61 (246)
54 1x58_A Hypothetical protein 49 97.5 0.00015 5.2E-09 49.5 4.9 45 5-60 9-56 (62)
55 2iw5_B Protein corest, REST co 97.4 4.6E-05 1.6E-09 63.8 1.9 28 131-159 131-158 (235)
56 3hm5_A DNA methyltransferase 1 97.3 0.00055 1.9E-08 49.9 6.6 53 4-67 30-87 (93)
57 2cu7_A KIAA1915 protein; nucle 97.2 0.00015 5E-09 49.2 2.0 26 133-159 9-34 (72)
58 2yum_A ZZZ3 protein, zinc fing 96.7 0.00045 1.5E-08 46.9 1.1 18 135-153 10-27 (75)
59 1x58_A Hypothetical protein 49 96.5 0.0011 3.7E-08 45.3 1.8 25 134-159 9-33 (62)
60 2aje_A Telomere repeat-binding 96.4 0.0012 4.2E-08 48.8 1.9 32 127-159 7-39 (105)
61 2elk_A SPCC24B10.08C protein; 96.2 0.0017 5.9E-08 42.4 1.6 24 135-159 11-35 (58)
62 2ltp_A Nuclear receptor corepr 95.1 0.00094 3.2E-08 47.3 0.0 24 135-159 18-41 (89)
63 1irz_A ARR10-B; helix-turn-hel 95.9 0.0048 1.6E-07 42.2 3.0 23 130-153 4-26 (64)
64 4iej_A DNA methyltransferase 1 95.9 0.023 7.8E-07 41.4 6.7 53 4-67 30-87 (93)
65 1x41_A Transcriptional adaptor 95.9 0.0031 1.1E-07 41.3 1.7 25 134-159 9-34 (60)
66 1fex_A TRF2-interacting telome 95.9 0.017 5.8E-07 38.2 5.4 53 5-59 3-56 (59)
67 1ity_A TRF1; helix-turn-helix, 95.7 0.0048 1.6E-07 41.2 2.2 30 129-159 6-36 (69)
68 2cqr_A RSGI RUH-043, DNAJ homo 95.5 0.0056 1.9E-07 42.3 2.0 25 130-155 15-39 (73)
69 1gvd_A MYB proto-oncogene prot 95.5 0.0062 2.1E-07 38.4 1.9 25 134-159 4-29 (52)
70 1w0t_A Telomeric repeat bindin 95.4 0.007 2.4E-07 38.5 2.0 25 134-159 3-28 (53)
71 1guu_A C-MYB, MYB proto-oncoge 95.3 0.0074 2.5E-07 38.0 1.9 25 134-159 4-29 (52)
72 2roh_A RTBP1, telomere binding 95.1 0.011 3.8E-07 44.7 2.8 31 128-159 26-57 (122)
73 3sjm_A Telomeric repeat-bindin 95.1 0.0089 3.1E-07 40.0 2.0 25 134-159 12-37 (64)
74 1irz_A ARR10-B; helix-turn-hel 95.1 0.09 3.1E-06 35.8 6.9 52 5-65 8-62 (64)
75 2y9y_A Imitation switch protei 94.9 0.043 1.5E-06 48.5 6.3 47 5-61 124-171 (374)
76 2juh_A Telomere binding protei 94.8 0.016 5.6E-07 43.7 3.0 32 127-159 11-43 (121)
77 2ebi_A DNA binding protein GT- 94.8 0.04 1.4E-06 38.0 4.6 62 4-68 4-71 (86)
78 2cqq_A RSGI RUH-037, DNAJ homo 94.7 0.022 7.5E-07 39.2 3.0 22 134-156 9-30 (72)
79 2d9a_A B-MYB, MYB-related prot 94.4 0.017 5.8E-07 37.3 1.9 25 134-159 9-34 (60)
80 1wgx_A KIAA1903 protein; MYB D 93.6 0.039 1.3E-06 38.4 2.6 20 135-155 10-29 (73)
81 2dim_A Cell division cycle 5-l 93.2 0.042 1.4E-06 36.5 2.2 25 134-159 10-35 (70)
82 2llk_A Cyclin-D-binding MYB-li 93.0 0.035 1.2E-06 38.3 1.5 25 134-159 24-48 (73)
83 2din_A Cell division cycle 5-l 92.9 0.046 1.6E-06 36.0 1.9 25 134-159 10-34 (66)
84 2cjj_A Radialis; plant develop 92.7 0.063 2.1E-06 38.6 2.5 20 135-155 10-29 (93)
85 1ofc_X ISWI protein; nuclear p 91.9 0.35 1.2E-05 41.5 6.7 53 4-63 212-276 (304)
86 4eef_G F-HB80.4, designed hema 91.0 0.057 2E-06 37.9 0.7 24 132-156 19-42 (74)
87 2xb0_X Chromo domain-containin 89.3 0.79 2.7E-05 38.5 6.4 50 5-62 4-55 (270)
88 1ign_A Protein (RAP1); RAP1,ye 89.2 0.91 3.1E-05 38.1 6.7 41 36-76 173-223 (246)
89 2y9y_A Imitation switch protei 76.3 4 0.00014 36.0 5.6 57 4-70 228-296 (374)
90 2cxy_A BAF250B subunit, HBAF25 74.1 5.6 0.00019 29.1 5.1 43 35-77 73-120 (125)
91 4b4c_A Chromodomain-helicase-D 71.7 11 0.00037 29.1 6.5 50 4-63 134-197 (211)
92 3v7d_A Suppressor of kinetocho 69.5 8.2 0.00028 29.5 5.3 47 8-57 100-146 (169)
93 1fs1_B SKP1, cyclin A/CDK2-ass 61.8 11 0.00038 27.7 4.6 50 10-63 90-139 (141)
94 2lm1_A Lysine-specific demethy 61.5 16 0.00053 25.7 5.2 35 35-69 66-104 (107)
95 2p1m_A SKP1-like protein 1A; F 61.4 7.3 0.00025 29.3 3.6 47 8-57 92-138 (160)
96 2jxj_A Histone demethylase jar 59.9 5 0.00017 27.8 2.2 36 34-69 57-96 (96)
97 1z0p_A Hypothetical protein SP 58.3 5.2 0.00018 28.4 2.1 17 143-159 56-74 (84)
98 2eqy_A RBP2 like, jumonji, at 56.0 36 0.0012 24.7 6.5 36 35-70 64-103 (122)
99 2kk0_A AT-rich interactive dom 53.3 13 0.00045 27.9 3.8 41 34-74 85-130 (145)
100 2jrz_A Histone demethylase jar 45.9 17 0.00057 26.3 3.2 36 35-70 62-101 (117)
101 1c20_A DEAD ringer protein; DN 43.9 40 0.0014 24.5 5.1 38 35-72 74-116 (128)
102 2ast_A S-phase kinase-associat 43.4 32 0.0011 25.5 4.5 45 10-57 95-139 (159)
103 1kkx_A Transcription regulator 42.4 29 0.00098 25.4 4.1 31 35-65 70-100 (123)
104 1hx1_B BAG-1, BAG-family molec 42.0 30 0.001 25.9 4.1 41 32-74 5-45 (114)
105 1hbk_A ACBP, acyl-COA binding 41.6 26 0.00088 24.3 3.5 29 34-63 55-83 (89)
106 2xb0_X Chromo domain-containin 39.8 18 0.0006 30.3 2.8 21 134-155 169-189 (270)
107 2cb8_A Acyl-COA-binding protei 36.9 36 0.0012 23.5 3.7 32 33-65 52-83 (87)
108 2hzd_A Transcriptional enhance 36.7 25 0.00085 24.8 2.8 23 3-27 5-27 (82)
109 1st7_A ACBP, acyl-COA-binding 34.6 28 0.00096 23.9 2.8 30 34-64 52-81 (86)
110 2cop_A Acyl-coenzyme A binding 32.5 37 0.0013 24.5 3.2 28 35-63 60-87 (109)
111 3epy_A Acyl-COA-binding domain 32.4 44 0.0015 23.2 3.5 31 34-65 55-85 (89)
112 2li6_A SWI/SNF chromatin-remod 31.9 19 0.00066 25.8 1.6 57 8-65 16-101 (116)
113 2lbb_A Acyl COA binding protei 30.9 88 0.003 22.1 5.0 30 34-64 62-91 (96)
114 2ys8_A RAB-related GTP-binding 29.6 1.3E+02 0.0044 20.1 6.0 46 5-63 10-55 (90)
115 1i6z_A BAG-family molecular ch 29.3 33 0.0011 26.3 2.5 41 32-74 15-55 (135)
116 1d2z_B Death domain of tube; s 28.3 20 0.00067 28.0 1.2 35 34-68 29-76 (153)
117 3b73_A PHIH1 repressor-like pr 27.2 1.4E+02 0.0049 21.1 5.7 51 1-62 4-56 (111)
118 3fp5_A Acyl-COA binding protei 26.3 81 0.0028 22.7 4.1 33 33-66 58-90 (106)
119 1ig6_A MRF-2, modulator recogn 22.9 19 0.00065 25.3 0.2 41 35-75 55-102 (107)
120 2wh5_A Acyl-COA-binding domain 22.2 2E+02 0.0069 20.5 5.6 30 35-65 64-93 (106)
121 2cqu_A Peroxisomal D3,D2-enoyl 21.1 1.6E+02 0.0056 21.4 5.0 29 35-64 68-96 (116)
122 1p4w_A RCSB; solution structur 20.6 2.1E+02 0.0072 19.5 6.5 56 5-74 33-98 (99)
123 1qgp_A Protein (double strande 20.6 1.5E+02 0.0052 19.4 4.4 45 9-61 13-57 (77)
No 1
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.92 E-value=3.3e-25 Score=162.14 Aligned_cols=69 Identities=45% Similarity=0.876 Sum_probs=61.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVG 78 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~~ 78 (159)
+...||.+||++||+||++| +++ +| +||++||++|||||+.||++||+.|++||..||+|+||+|+|..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~--~~~-~~----~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~ 75 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVY--DKD-TP----DRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRT 75 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHS--CTT-CT----THHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCC-CC----chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 34689999999999999999 998 89 99999999999999999999999999999999999999999974
No 2
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.91 E-value=2.8e-25 Score=155.66 Aligned_cols=65 Identities=22% Similarity=0.407 Sum_probs=61.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYV 77 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~ 77 (159)
...||.+|||+||+||++| |++ +| +||++||++| |||+.||++||+.|++|| .||+|+||||+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~--p~~-t~----~RW~~IA~~l-gRt~~eV~~~y~~L~~d~-~~~~G~vp~P~~~ 72 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKF--PGG-TP----GRWEKIAHEL-GRSVTDVTTKAKQLKDSV-TCSPGMVSGPSSG 72 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHS--CTT-CT----THHHHHHHHH-TSCHHHHHHHHHHHHHSC-CCCSCCCSCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHC--CCC-CC----cHHHHHHHHh-CCCHHHHHHHHHHHHHhc-CccCCCCCCCCCC
Confidence 4679999999999999999 998 99 9999999997 999999999999999997 6999999999994
No 3
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.82 E-value=5.5e-21 Score=134.90 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=51.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 1 MSSAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 1 ms~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
|+.+..||.+|||+||+||+.| |++ +| +||++||++|||||++||++||+.|+++
T Consensus 5 ~~~~~~WT~eE~k~fe~ALa~~--~~~-tp----~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 5 SSGDKEWNEKELQKLHCAFASL--PKH-KP----GFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHS--CSS-SS----SHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHC--CCC-Cc----cHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 6778899999999999999999 999 99 9999999999999999999999998443
No 4
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.80 E-value=1.5e-21 Score=138.36 Aligned_cols=49 Identities=37% Similarity=0.742 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
++..||++|||+||+||++| |++ +| +||++||++|||||++||++||+.
T Consensus 19 ss~~WT~eE~K~FE~ALa~y--p~~-tp----dRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFT--NKD-TP----DRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSS--CSS-CC----SSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCC-CC----cHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35689999999999999999 999 99 999999999999999999999975
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.74 E-value=1.3e-18 Score=122.08 Aligned_cols=55 Identities=29% Similarity=0.543 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 3 SAATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
....||.+||++|++||++| +++ ++ +||.+||++|||||..||+.||+.|++||.
T Consensus 17 ~~~~WT~eEd~~L~~al~~~--g~~-~~----~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQY--PRG-SS----DCWDKIARCVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHS--CSS-SH----HHHHHHGGGCSSSCHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHc--CCC-CC----chHHHHHHHcCCCCHHHHHHHHHHHHHccc
Confidence 34679999999999999999 988 89 999999999999999999999999999974
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.7e-13 Score=93.38 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCC--hHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDS--KEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYV 77 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~--p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~ 77 (159)
..||.+||++|+.+|+.| +.+ + + .+|.+||++|||||..||+.||+.++.. .+..| +++|++.
T Consensus 9 ~~WT~eEd~~L~~~v~~~--g~~-~~~~----~~W~~IA~~~~~Rt~~qcr~r~~~~l~~--~~k~g-~~~pg~~ 73 (75)
T 2yum_A 9 QLWTVEEQKKLEQLLIKY--PPE-EVES----RRWQKIADELGNRTAKQVASQVQKYFIK--LTKAG-IPVSGPS 73 (75)
T ss_dssp SCCCHHHHHHHHHHHHHS--CCC-SCHH----HHHHHHHHHHSSSCHHHHHHHHHHHHGG--GSTTC-SCCCCSC
T ss_pred CCCCHHHHHHHHHHHHHh--CCC-CCCc----ccHHHHHHHhCCCCHHHHHHHHHHHHHH--HHhcC-CCCCCCC
Confidence 579999999999999999 865 3 5 7999999999999999999999766644 34566 5888874
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.38 E-value=5.2e-14 Score=99.56 Aligned_cols=58 Identities=26% Similarity=0.464 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHhCCCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL-LEDVNAIEAGNIP 72 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L-~eDV~~IEsG~vp 72 (159)
...||.+|+++|..||.+| + ++|.+||.+||+||..||+.||..| ++|+..||+|--|
T Consensus 18 ~~~WT~eEd~~Ll~~v~~~--G---------~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~~~~~p 76 (79)
T 2yus_A 18 GREWTEQETLLLLEALEMY--K---------DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDSGP 76 (79)
T ss_dssp SCCCCHHHHHHHHHHHHHS--S---------SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCCCCCCS
T ss_pred CCCcCHHHHHHHHHHHHHh--C---------CCHHHHHHHcCCCCHHHHHHHHHHhcccccccccCCCCC
Confidence 4689999999999999999 5 4899999999999999999999999 8888888777544
No 8
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.34 E-value=1.6e-12 Score=94.79 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATS 84 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~~~~~~~~ 84 (159)
..||.+||.+|..++..| + + .+|..||..|||+|..||++||...+. |+..
T Consensus 2 ~~Wt~eED~~L~~~v~~~--g----~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~------------p~i~------- 52 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY--G----A----KDWIRISQLMITRNPRQCRERWNNYIN------------PALR------- 52 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH--C----S----SCHHHHHHHTTTSCHHHHHHHHHHHSS------------SCCT-------
T ss_pred CCCCHHHHHHHHHHHHHH--C----C----CCHHHHhhhcCCCCHHHHHHHHHHHHc------------cccc-------
Confidence 369999999999999999 5 3 589999999999999999999986431 1110
Q ss_pred CCCCCCCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCcchhhhcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 85 STKDFHGPSTAADNRSNGVYGSGFSGLSHDPSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~G~~~~~~~~~~~~~k~~~~~~~~rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
.-|||+||..++|.. +++||.-|..|
T Consensus 53 ------------------------------------------------~~~WT~eEd~~L~~~-~~~~G~~W~~I 78 (107)
T 2k9n_A 53 ------------------------------------------------TDPWSPEEDMLLDQK-YAEYGPKWNKI 78 (107)
T ss_dssp ------------------------------------------------TCCCCHHHHHHHHHH-HHHTCSCHHHH
T ss_pred ------------------------------------------------ccccCHHHHHHHHHH-HHHhCcCHHHH
Confidence 019999999999999 99999988654
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.34 E-value=1.6e-12 Score=93.76 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
..||.+||.+|..++..| + + .+|..||..|||||..+|++||..+
T Consensus 5 ~~WT~eED~~L~~~v~~~--g----~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKY--G----P----KRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp SCCCHHHHHHHHHHHHHH--C----T----TCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh--C----C----CcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 579999999999999999 5 3 5799999999999999999999874
No 10
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=99.29 E-value=1.9e-12 Score=111.47 Aligned_cols=111 Identities=22% Similarity=0.254 Sum_probs=78.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH----------HHHHhCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV----------NAIEAGNIPLP 74 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV----------~~IEsG~vplP 74 (159)
..||+.|...|++|++.| +. +.|++||+.|+|||++||+++|+.+.+.+ ..||.|...+.
T Consensus 111 ~~W~rrdf~~Fi~a~~ky--Gr--------~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~ 180 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKY--GR--------DDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQ 180 (304)
T ss_dssp TTCCHHHHHHHHHHHHHH--CT--------TCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHh--CH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHH
Confidence 569999999999999999 54 57899999999999999999999999998 88999977766
Q ss_pred CCCCCCCCC-CCCCCCCCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCcchhhhcCCCCCCHHHHHHHHHHHHHHhh
Q 031444 75 NYVGEDRAT-SSTKDFHGPSTAADNRSNGVYGSGFSGLSHDPSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEKHF 153 (159)
Q Consensus 75 ~y~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~G~~~~~~~~~~~~~k~~~~~~~~rkkg~pWteeEHr~fl~g~l~k~g 153 (159)
.+......- .-...+. .+...+.-.+ + -.+|.+|||||||.+|.+ |.|||
T Consensus 181 r~~~~~~~l~~Ki~~~~----~P~~~L~i~y-----------------~-------~~k~k~yteeEDRfLL~~-l~k~G 231 (304)
T 1ofc_X 181 RRLSIKKALDQKMSRYR----APFHQLRLQY-----------------G-------NNKGKNYTEIEDRFLVCM-LHKLG 231 (304)
T ss_dssp HHHHHHHHHHHHHHTCS----SHHHHCCCCC-----------------T-------TCCCSSCCHHHHHHHHHH-HHHHC
T ss_pred HHHHHHHHHHHHHHHhc----CcHHHhcccc-----------------C-------CCCCCccCHHHHHHHHHH-HHHhc
Confidence 543210000 0000000 0000000000 0 126669999999999999 99999
Q ss_pred c
Q 031444 154 K 154 (159)
Q Consensus 154 k 154 (159)
.
T Consensus 232 ~ 232 (304)
T 1ofc_X 232 F 232 (304)
T ss_dssp T
T ss_pred C
Confidence 7
No 11
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.28 E-value=4.6e-12 Score=94.57 Aligned_cols=45 Identities=18% Similarity=0.434 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
..||.+||.++..++..| + + .+|..||..|||+|..+|++||..+
T Consensus 28 ~~Wt~eED~~L~~~v~~~--g----~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 28 GPWTKEEDQRVIEHVQKY--G----P----KRWSDIAKHLKGRIGKQCRERWHNH 72 (128)
T ss_dssp SCCCHHHHHHHHHHHHHT--C----S----CCHHHHHHHSSSCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH--C----C----CCHHHHHHHhcCCcHHHHHHHHHHh
Confidence 579999999999999999 5 3 5799999999999999999999873
No 12
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.20 E-value=3.9e-11 Score=89.77 Aligned_cols=45 Identities=27% Similarity=0.595 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||.++..++..| + ..|..||..|||||..+|++||...+
T Consensus 12 ~~WT~eED~~L~~~v~~~--G---------~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 12 QKFTPEEDEMLKRAVAQH--G---------SDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CCCCHHHHHHHHHHHHHH--T---------TCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh--C---------CCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 579999999999999999 4 36999999999999999999999654
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.6e-11 Score=81.69 Aligned_cols=54 Identities=28% Similarity=0.605 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGN 70 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~ 70 (159)
..||.+||.+|..+...| + .+|.+||. +||||..||+.||..|+.++..+|+|.
T Consensus 10 ~~WT~eED~~L~~~~~~~--g---------~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~~ 63 (66)
T 2din_A 10 TEWSREEEEKLLHLAKLM--P---------TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSGP 63 (66)
T ss_dssp CCCCHHHHHHHHHHHHHC--T---------TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCHHHHHHHHHHHHHc--C---------CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCCC
Confidence 579999999999999999 4 58999999 899999999999999999999998873
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.5e-11 Score=80.12 Aligned_cols=44 Identities=23% Similarity=0.445 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
...||.+|+++|+.||++| + .+|.+||++||+||+.||+++|-.
T Consensus 12 ~~~WT~eE~~~F~~~~~~~--g---------k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQH--P---------KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHS--T---------TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh--C---------CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 3689999999999999999 5 579999999999999999999954
No 15
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.15 E-value=3.4e-11 Score=80.16 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||++|..|+..| + + .+|.+||..|||||..||++||..++
T Consensus 9 ~~WT~eED~~L~~~v~~~--G----~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l 54 (60)
T 1x41_A 9 PSWTAQEEMALLEAVMDC--G----F----GNWQDVANQMCTKTKEECEKHYMKYF 54 (60)
T ss_dssp SSSCHHHHHHHHHHHHHT--C----T----TCHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH--C----c----CcHHHHHHHhCCCCHHHHHHHHHHHc
Confidence 579999999999999999 4 3 58999999999999999999999764
No 16
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.13 E-value=3.5e-11 Score=90.39 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||.++..++..| + + ..|..||..|||||..||++||...+
T Consensus 3 g~Wt~eED~~L~~~v~~~--g----~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKEN--G----P----QNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHH--C----S----CCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh--C----c----CCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 469999999999999999 4 3 57999999999999999999998765
No 17
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.12 E-value=7.8e-11 Score=90.64 Aligned_cols=77 Identities=25% Similarity=0.516 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLPNYVGEDRATS 84 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP~y~~~~~~~~ 84 (159)
..||.+||.++..++..| + + .+|..||..|||+|..+|+.||..++. |..
T Consensus 59 ~~Wt~eEd~~L~~~v~~~--g----~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~------------p~~-------- 108 (159)
T 1h89_C 59 GPWTKEEDQRVIKLVQKY--G----P----KRWSVIAKHLKGRIGKQCRERWHNHLN------------PEV-------- 108 (159)
T ss_dssp SCCCHHHHHHHHHHHHHH--C----S----CCHHHHHHTSTTCCHHHHHHHHHHTTC------------TTS--------
T ss_pred CCCChHHHHHHHHHHHHh--C----c----ccHHHHHHHcCCCCHHHHHHHHHHHhC------------ccc--------
Confidence 579999999999999999 4 3 589999999999999999999976420 000
Q ss_pred CCCCCCCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCcchhhhcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 85 STKDFHGPSTAADNRSNGVYGSGFSGLSHDPSGHGSKGSSKSEQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 85 ~~~~~~~~~~t~~~~~~~~~~~G~~~~~~~~~~~~~k~~~~~~~~rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
+..|||+||..+.|.. +++||..|..|
T Consensus 109 -----------------------------------------------~~~~WT~eEd~~L~~~-~~~~g~~W~~I 135 (159)
T 1h89_C 109 -----------------------------------------------KKTSWTEEEDRIIYQA-HKRLGNRWAEI 135 (159)
T ss_dssp -----------------------------------------------CCSCCCHHHHHHHHHH-HHHHCSCHHHH
T ss_pred -----------------------------------------------cccCCChHHHHHHHHH-HHHHCCCHHHH
Confidence 1139999999999999 99999988654
No 18
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.06 E-value=1.9e-10 Score=76.25 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L 59 (159)
..||.+||++|..|+.+| + + .+|.+||..|| |||..||++||..+
T Consensus 10 ~~WT~eED~~L~~~v~~~--G----~----~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETL--G----L----GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHT--T----T----TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--C----c----CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 469999999999999999 4 3 58999999999 99999999999865
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.05 E-value=2.7e-10 Score=73.19 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||.+|..++..| + + .+|..||..|||||..||+.||..++
T Consensus 4 ~~Wt~eED~~L~~~v~~~--G----~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQN--G----T----DDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHH--C----S----SCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--C----C----CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 579999999999999999 5 3 48999999999999999999999876
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.99 E-value=4.1e-10 Score=72.44 Aligned_cols=46 Identities=20% Similarity=0.448 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||.+|..++..| + + .+|..||..|||||..||+.||..++
T Consensus 4 ~~Wt~eED~~L~~~v~~~--G----~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKY--G----P----KRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CSCCHHHHHHHHHHHHHH--C----T----TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHH--C----c----ChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 579999999999999999 4 3 47999999999999999999998754
No 21
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.98 E-value=6.2e-10 Score=76.27 Aligned_cols=49 Identities=27% Similarity=0.556 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
...||.+||.+|..++..| + .+|.+||.+|||||..||+.||..++...
T Consensus 9 ~~~WT~eEd~~l~~~~~~~--G---------~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKF--G---------RRWTKISKLIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHT--C---------SCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--C---------cCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999 4 48999999999999999999999887654
No 22
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=6e-10 Score=73.57 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||.+|..++..| + + .+|..||..|||||..||+.||..++
T Consensus 9 ~~Wt~eED~~L~~~v~~~--G----~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 9 VKWTHEEDEQLRALVRQF--G----Q----QDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp SCCCHHHHHHHHHHHHHT--C----T----TCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHh--C----C----CCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 579999999999999999 4 3 58999999999999999999998764
No 23
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.92 E-value=1.6e-10 Score=88.91 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=7.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L 59 (159)
..||.+||.+|..++..| + + ..|..||+.|||+|..||++||..+
T Consensus 7 ~~Wt~eED~~L~~~v~~~--g----~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 51 (159)
T 1h89_C 7 TRWTREEDEKLKKLVEQN--G----T----DDWKVIANYLPNRTDVQCQHRWQKV 51 (159)
T ss_dssp ----------------------------------------------CHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHh--C----C----CCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 569999999999999999 4 4 6899999999999999999999853
No 24
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=3.4e-09 Score=71.58 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHH-hCCCCCHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIAS-MVPSRSVEELKQHYQ 57 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~-~VPGKT~~ev~~hY~ 57 (159)
...||.+|.++||.||++| ++ .|.+||. +||.||+.||+++|=
T Consensus 9 ~~~WT~eE~~~Fe~~l~~y--GK---------df~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQY--GK---------NFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHT--CS---------CHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh--Cc---------cHHHHHHHHcCCCcHHHHHHHHh
Confidence 4689999999999999999 64 4999998 699999999999994
No 25
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.84 E-value=5.9e-09 Score=67.41 Aligned_cols=46 Identities=24% Similarity=0.439 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC--CCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP--SRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP--GKT~~ev~~hY~~L~ 60 (159)
..||.+||.++..++..| + + ..|..||..+| |+|..||+.||..|+
T Consensus 3 ~~WT~eEd~~L~~~v~~~--G----~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY--G----E----GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH--C----T----TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--C----c----CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 479999999999999999 4 4 68999999999 999999999999876
No 26
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.84 E-value=6.1e-09 Score=71.85 Aligned_cols=43 Identities=23% Similarity=0.451 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHH-hCCCCCHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIAS-MVPSRSVEELKQHYQ 57 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~-~VPGKT~~ev~~hY~ 57 (159)
...||.+|.++||.||+.| ++ .|.+||. +||+||+.||.++|-
T Consensus 8 ~~~WT~eE~~~Fe~~l~~y--GK---------df~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKY--GK---------DFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHT--CS---------CHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh--Cc---------cHHHHHHHHcCCCCHHHHHHHHH
Confidence 3589999999999999999 64 3999999 699999999999995
No 27
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.82 E-value=8.3e-10 Score=100.08 Aligned_cols=42 Identities=29% Similarity=0.672 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
..||.+|.++||.+|..| ++ .|.+|+.+||+||+.||.++|=
T Consensus 190 d~WT~eE~~lFe~al~~y--GK---------dF~~I~~~lp~Ksv~e~V~yYY 231 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFH--GK---------TFHRIQQMLPDKSIASLVKFYY 231 (482)
T ss_dssp -----------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHc--Cc---------cHHHHHHHcCCCCHHHHHHHhc
Confidence 479999999999999999 64 5799999999999999998863
No 28
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.9e-09 Score=71.67 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
..||.+||.+|..++..| + + .+|.+||..|||||..||+.||...+
T Consensus 10 ~~Wt~eED~~L~~~v~~~--G----~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKY--G----K----NQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CCCCHHHHHHHHHHHHHT--C----S----SCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHH--C----c----CCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 479999999999999999 4 3 58999999999999999999998754
No 29
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.78 E-value=1.3e-08 Score=69.08 Aligned_cols=47 Identities=17% Similarity=0.425 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP--SRSVEELKQHYQILLE 61 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP--GKT~~ev~~hY~~L~e 61 (159)
..||.|||.++..++..| . + ..|.+||..+| |+|..||++||..|+.
T Consensus 12 ~~WT~eED~~L~~~V~~~--G----~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 12 QKWTVEESEWVKAGVQKY--G----E----GNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp CCCCHHHHHHHHHHHHHH--C----T----TCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHcc--C----C----CchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 479999999999999999 4 3 57999999988 9999999999998763
No 30
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.2e-09 Score=71.04 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=30.7
Q ss_pred cchhhhcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 125 KSEQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 125 ~~~~~rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
+...+|+...|||+|||++|+.+ |.+|||.|..|
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~-~~~~gk~w~~I 37 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDK-FIQHPKNFGLI 37 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHH-HHHSTTCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHH-HHHhCCCHHHH
Confidence 45678899999999999999999 99999999765
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.73 E-value=1e-08 Score=73.66 Aligned_cols=46 Identities=26% Similarity=0.609 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
...||.+||.+|..+++.| + .+|..||..|||||..+|+.||..|+
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~--G---------~~W~~Ia~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRL--G---------NRWAEIAKLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHH--S---------SCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHh--C---------CCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3579999999999999999 4 47999999999999999999999875
No 32
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.69 E-value=3.1e-08 Score=67.13 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC--CCCHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP--SRSVEELKQHYQILLE 61 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP--GKT~~ev~~hY~~L~e 61 (159)
-..||.+||.++-.++..| . + ..|..||..+| |+|..||+.||..++.
T Consensus 10 r~~WT~eED~~L~~~v~~~--G----~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 10 RQAWLWEEDKNLRSGVRKY--G----E----GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHH--C----S----SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--C----C----CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 3579999999999999999 4 3 58999999999 9999999999998864
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.69 E-value=1.7e-08 Score=73.29 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
...||.+||.+|..++..| + .+|..||..|||+|..+|+.||..|+..+..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~--G---------~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEY--G---------PKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHT--C---------SCHHHHHHHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHHh--C---------cCHHHHHHHCCCCCHHHHHHHHHHHHhhHHH
Confidence 3579999999999999999 4 4799999999999999999999999877643
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.61 E-value=4.1e-08 Score=73.23 Aligned_cols=48 Identities=25% Similarity=0.500 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..||.+||.+|..++..| + .+|.+||..|||||..+|+.||..|+.-+
T Consensus 63 ~~WT~eEd~~L~~~v~~~--G---------~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEY--G---------RQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCCHHHHHHHHHHHHHH--C---------SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHH--C---------cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 479999999999999999 4 47999999999999999999999998764
No 35
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.03 E-value=5.1e-09 Score=74.86 Aligned_cols=47 Identities=28% Similarity=0.478 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
..||.+||.+|..++..| + .+|..||.+|||||..||+.||..++.-
T Consensus 17 ~~WT~eEd~~l~~~~~~~--G---------~~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEH--G---------RNWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 579999999999999999 4 4799999999999999999999877653
No 36
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.57 E-value=3.2e-08 Score=73.61 Aligned_cols=46 Identities=26% Similarity=0.601 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILL 60 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~ 60 (159)
...||.+||+++..++..| + .+|.+||..|||+|..+|+.||..|+
T Consensus 79 ~~~WT~eEd~~L~~~~~~~--G---------~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRL--G---------NRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHH--C---------SCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHHH--C---------cCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999 4 47999999999999999999998765
No 37
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.52 E-value=6.9e-08 Score=80.74 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH------HHHHHHHHHhCCCCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI------LLEDVNAIEAGNIPL 73 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~------L~eDV~~IEsG~vpl 73 (159)
...||.+|+++|+.||+.| + ..|.+||..||+||+.||+.||.. |-+-|..-|+..-++
T Consensus 133 s~~WTeEE~~lFleAl~kY--G---------KDW~~IAk~VgTKT~~QcKnfY~~~kKRlnLD~ilke~eae~g~~ 197 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKY--G---------RDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWEAEHGKE 197 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHH--S---------SCHHHHHHHHSSCCHHHHHHHHHHTTTTTTHHHHHHHHHTC----
T ss_pred CCCCCHHHHHHHHHHHHHH--C---------cCHHHHHHHcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCC
Confidence 4689999999999999999 5 359999999999999999999974 445555566654443
No 38
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.51 E-value=1.7e-07 Score=67.92 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
..||.+|..+|+.+|.+| |+ .|.+||+.||+||+.||.++|=
T Consensus 44 ~~WT~eE~~~F~~~~~~~--gK---------~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQH--PK---------NFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp CCCCHHHHHHHHHHHHHS--TT---------CHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHc--CC---------CHHHHHHHcCCCCHHHHHHHHh
Confidence 579999999999999999 64 5899999999999999999994
No 39
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.43 E-value=1.6e-07 Score=65.60 Aligned_cols=47 Identities=17% Similarity=0.406 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
-..||.|||.++..+.+.| + .+|.+||..+ |||..+|+.||..|..+
T Consensus 23 k~~wT~EED~~L~~l~~~~--G---------~kW~~IA~~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKH--G---------NDWATIGAAL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHH--S---------SCHHHHHHHH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCHHHHHHHHHHHHHH--C---------CCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3579999999999999999 4 3599999999 99999999999987654
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.32 E-value=3.2e-07 Score=68.69 Aligned_cols=47 Identities=21% Similarity=0.498 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
..||.+||.++..++..| + .+|..||..|||+|..+|+.||..++.-
T Consensus 55 ~~Wt~eEd~~L~~~~~~~--G---------~~W~~Ia~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKL--G---------SKWSVIAKLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp SCCCHHHHHHHHHHHHHS--C---------SCHHHHTTTSTTCCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHH--C---------cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999 4 4799999999999999999999987643
No 41
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2e-07 Score=62.84 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=25.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 130 RRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 130 rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
+.+..+||+|||++|+.| |.+|||.|..|
T Consensus 6 ~~~~~~WT~eE~~~Fe~~-l~~yGKdf~~I 34 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKG-LRQYGKNFFRI 34 (63)
T ss_dssp CCCCCSCCHHHHHHHHHH-HHHTCSCHHHH
T ss_pred CcCCCCcCHHHHHHHHHH-HHHhCccHHHH
Confidence 445579999999999999 99999999765
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.17 E-value=3.2e-06 Score=60.20 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHh----CCCCCHHHHHHHHHHHHH
Q 031444 6 TWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASM----VPSRSVEELKQHYQILLE 61 (159)
Q Consensus 6 ~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~----VPGKT~~ev~~hY~~L~e 61 (159)
.||.+|+.++-.++.+| + + .+|.+|+.. +||+|..+|+.+|..|+.
T Consensus 2 ~WT~eEd~~L~~gv~k~--G----~----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL--G----T----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHH--C----S----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--C----C----CCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 69999999999999999 5 3 589999996 899999999999999985
No 43
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=98.13 E-value=2.7e-05 Score=61.50 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHh--CCCCCHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASM--VPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~--VPGKT~~ev~~hY~~L~eDV 63 (159)
...||..|-+.|.+|+..| +. .. +||+.|+.. +++||.++|++.|+.++.-.
T Consensus 7 ~~~~t~~E~r~fira~~kf--G~--~~----~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKF--GG--PL----ERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTC--SS--GG----GCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--CC--ch----hHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3579999999999999999 63 24 799999965 77999999999888887664
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.01 E-value=1.9e-06 Score=59.29 Aligned_cols=29 Identities=31% Similarity=0.289 Sum_probs=25.5
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 130 RRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 130 rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
|+.-.+||+|||++|+.| |.+|||.|..|
T Consensus 5 r~~~~~WT~eE~~~Fe~~-l~~yGKdf~~I 33 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEA-LEKYGKDFNDI 33 (70)
T ss_dssp CCSSCCCCHHHHHHHHHH-HHHTCSCHHHH
T ss_pred ccCCCCCCHHHHHHHHHH-HHHhCccHHHH
Confidence 455569999999999999 99999999765
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.88 E-value=1.5e-05 Score=72.39 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
+..||.+|..+|+.||..| ++ .|.+||..|+.||+.||+.||..
T Consensus 380 ~~~WT~eE~~~f~~al~~y--Gk---------dw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKY--GR---------DFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHH--TT---------CHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--Cc---------CHHHHHHHhCCCCHHHHHHHHHH
Confidence 5689999999999999999 53 59999999999999999999974
No 46
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.80 E-value=2.5e-05 Score=57.95 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=42.9
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV----PSRSVEELKQHYQILLE 61 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V----PGKT~~ev~~hY~~L~e 61 (159)
..||.+|+.++-.++..| . . .+|..|+... ||+|..+|+.+|..|+.
T Consensus 14 ~~WT~EEd~~L~~gV~k~--G----~----g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk 64 (105)
T 2aje_A 14 RPFSVAEVEALVQAVEKL--G----T----GRWRDVKLCAFEDADHRTYVDLKDKWKTLVH 64 (105)
T ss_dssp CSCCHHHHHHHHHHHHHH--C----S----SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--C----C----CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 579999999999999999 5 3 5899999976 89999999999999984
No 47
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.78 E-value=5.1e-05 Score=55.73 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=44.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..||+++|+..-.+..+- .. ++ +.|..||..|..||+.||.+||+.|+.-+
T Consensus 34 vlWTRe~DR~IL~~cQ~~--G~--s~----~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQ--GA--QP----HTFSVISQQLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp SSSCHHHHHHHHHHHHHT--TS--CT----TTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhc--CC--Ch----hHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 469999999998888877 54 46 89999999998999999999999997654
No 48
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.68 E-value=4.1e-05 Score=58.13 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC----CCCCHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV----PSRSVEELKQHYQILLED 62 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V----PGKT~~ev~~hY~~L~eD 62 (159)
..||.+|+.++-.++..| . + .+|..||... ||+|..+|+.+|..|+.-
T Consensus 18 ~~WT~EEd~~L~~gV~k~--G----~----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 18 RPFSVAEVEALVEAVEHL--G----T----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCHHHHHHHHHHHHHH--G----G----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--C----C----CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 579999999999999999 4 3 5999999994 899999999999999864
No 49
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.68 E-value=1.9e-05 Score=55.47 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=25.3
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 129 ERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 129 ~rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
.+...-|||+||+.+||.+ |++||..|.+|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~-v~~~G~~W~~I 43 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEA-LEMYKDDWNKV 43 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHH-HHHSSSCHHHH
T ss_pred ccccCCCcCHHHHHHHHHH-HHHhCCCHHHH
Confidence 4455679999999999999 99999887654
No 50
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.67 E-value=5.2e-05 Score=57.63 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC----CCCCHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV----PSRSVEELKQHYQILLE 61 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V----PGKT~~ev~~hY~~L~e 61 (159)
..||.+|+.++-.++.+| . + .+|..|+... +|+|..||+.+|..|+.
T Consensus 32 ~~WT~EEd~~L~~gV~k~--G----~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 32 RPFTVAEVELLVEAVEHL--G----T----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCHHHHHHHHHHHHHH--S----S----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--C----C----CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 579999999999999999 5 3 5899999974 89999999999999975
No 51
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.82 E-value=6.7e-06 Score=57.53 Aligned_cols=50 Identities=14% Similarity=0.349 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..||++||+..-.+..+- .. ++ +.|..||..+ +||+.||..||+.|+.-+
T Consensus 15 vlWTReeDR~IL~~cq~~--G~--s~----~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKR--GP--SS----KTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 469999999887776655 43 46 8999999999 999999999999998644
No 52
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.55 E-value=2e-05 Score=57.00 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.2
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 127 EQERRKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 127 ~~~rkkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
..+|+--.+||+|||++|..+ |..|||.|..|
T Consensus 37 ~~~r~~~~~WT~eE~~~F~~~-~~~~gK~F~~I 68 (94)
T 4a69_C 37 YKDRQVMNMWSEQEKETFREK-FMQHPKNFGLI 68 (94)
T ss_dssp HHHHHHTCCCCHHHHHHHHHH-HHHSTTCHHHH
T ss_pred HhccCCCCCCCHHHHHHHHHH-HHHcCCCHHHH
Confidence 456777789999999999999 99999999765
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.53 E-value=6.3e-05 Score=63.30 Aligned_cols=52 Identities=15% Similarity=0.424 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCC-ChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDD-SKEEQQQQWQKIASMVPSRSVEELKQHYQILLED 62 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~-~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eD 62 (159)
..||.+||.++-.+..++ +... +. .-|..||.+|||+|..+|+.||..++..
T Consensus 9 ~~FT~EED~~Ile~v~k~--Gn~r~gh----k~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKN--PTRRTTH----TLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp CCCCHHHHHHHHHHHHTS--GGGTTCS----HHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHh--CcCcccc----ccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 479999999999999999 6420 11 1399999999999999999999997754
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.48 E-value=0.00015 Score=49.50 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHH---hCCCCCHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIAS---MVPSRSVEELKQHYQILL 60 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~---~VPGKT~~ev~~hY~~L~ 60 (159)
..||.||+..+...+.+| . ..|..|+. .++++|..+++.+|..|.
T Consensus 9 ~~WT~EE~~~L~~gV~k~--G---------~~W~~I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTM--G---------NHWNSILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp SSCCHHHHHHHHHHHHHH--C---------SCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--h---------HhHHHHHHhCCCccCcccchHHHHHHHHH
Confidence 579999999999999999 4 37999994 678999999999999986
No 55
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.41 E-value=4.6e-05 Score=63.76 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=25.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 131 RKGIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 131 kkg~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
+..-+||+|||++||.+ |.+|||.|..|
T Consensus 131 k~s~~WTeEE~~lFleA-l~kYGKDW~~I 158 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQA-IRKYGRDFQAI 158 (235)
T ss_dssp CCCSSCCHHHHHHHHHH-HHHHSSCHHHH
T ss_pred ccCCCCCHHHHHHHHHH-HHHHCcCHHHH
Confidence 45669999999999999 99999999865
No 56
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.32 E-value=0.00055 Score=49.90 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhC-----CCCCHHHHHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMV-----PSRSVEELKQHYQILLEDVNAIE 67 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~V-----PGKT~~ev~~hY~~L~eDV~~IE 67 (159)
...||+||...+=....+| + -||-.|+... +++|+++||.||-.++.-+....
T Consensus 30 ~~~WTkEETd~Lf~L~~~f--d---------lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRF--D---------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHT--T---------TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh--C---------CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999 3 5999999999 58999999999999988765443
No 57
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.17 E-value=0.00015 Score=49.25 Aligned_cols=26 Identities=27% Similarity=0.458 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 133 GIPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 133 g~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
.-|||+||+.+||.+ +++||+.|..|
T Consensus 9 ~~~WT~eEd~~l~~~-~~~~G~~W~~I 34 (72)
T 2cu7_A 9 SVKWTIEEKELFEQG-LAKFGRRWTKI 34 (72)
T ss_dssp CCCCCHHHHHHHHHH-HHHTCSCHHHH
T ss_pred CCCCCHHHHHHHHHH-HHHHCcCHHHH
Confidence 349999999999999 99999988654
No 58
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.68 E-value=0.00045 Score=46.91 Aligned_cols=18 Identities=33% Similarity=0.398 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 031444 135 PWTEEEHRQIWKRRLEKHF 153 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~g 153 (159)
|||+||+.+|+.+ |++||
T Consensus 10 ~WT~eEd~~L~~~-v~~~g 27 (75)
T 2yum_A 10 LWTVEEQKKLEQL-LIKYP 27 (75)
T ss_dssp CCCHHHHHHHHHH-HHHSC
T ss_pred CCCHHHHHHHHHH-HHHhC
Confidence 9999999999999 99999
No 59
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.46 E-value=0.0011 Score=45.28 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
.|||+||-..-|.| .++||+-|.+|
T Consensus 9 ~~WT~EE~~~L~~g-V~k~G~~W~~I 33 (62)
T 1x58_A 9 KDFTKEEVNYLFHG-VKTMGNHWNSI 33 (62)
T ss_dssp SSCCHHHHHHHHHH-HHHHCSCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHhHhHHHH
Confidence 39999999999999 99999988765
No 60
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.39 E-value=0.0012 Score=48.80 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=25.9
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHhhc-ccccC
Q 031444 127 EQERRKGIPWTEEEHRQIWKRRLEKHFK-KFCDI 159 (159)
Q Consensus 127 ~~~rkkg~pWteeEHr~fl~g~l~k~gk-~~~~~ 159 (159)
...|++..|||+||-...+.| +++||. .|.+|
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~g-V~k~G~g~W~~I 39 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQA-VEKLGTGRWRDV 39 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHH-HHHHCSSSHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHH-HHHhCCCChHHH
Confidence 345778889999999999999 999998 56543
No 61
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.18 E-value=0.0017 Score=42.38 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 135 PWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
|||+||+.++|.+ +++|| ..|..|
T Consensus 11 ~WT~eED~~L~~~-v~~~G~~~W~~I 35 (58)
T 2elk_A 11 NWGADEELLLIDA-CETLGLGNWADI 35 (58)
T ss_dssp CCCHHHHHHHHHH-HHHTTTTCHHHH
T ss_pred CCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence 8999999999999 99999 666543
No 62
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.10 E-value=0.00094 Score=47.31 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcccccC
Q 031444 135 PWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
|||+||+.+||.+ +++||..|..|
T Consensus 18 ~WT~eEd~~l~~~-~~~~G~~W~~I 41 (89)
T 2ltp_A 18 GWTEEEMGTAKKG-LLEHGRNWSAI 41 (89)
Confidence 9999999999999 99999999876
No 63
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.95 E-value=0.0048 Score=42.17 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=21.7
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhh
Q 031444 130 RRKGIPWTEEEHRQIWKRRLEKHF 153 (159)
Q Consensus 130 rkkg~pWteeEHr~fl~g~l~k~g 153 (159)
+|..+.||+|.|+.|+.. ++.+|
T Consensus 4 ~k~r~~WT~elH~~Fv~A-v~~LG 26 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAA-VDHLG 26 (64)
T ss_dssp CCSSCSSCHHHHHHHHHH-HHHHC
T ss_pred CCCCCcCCHHHHHHHHHH-HHHhC
Confidence 678899999999999999 99999
No 64
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.92 E-value=0.023 Score=41.43 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-----SRSVEELKQHYQILLEDVNAIE 67 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-----GKT~~ev~~hY~~L~eDV~~IE 67 (159)
+..||++|-..+=.....| + -||--|+.... .+|++|+|+||-.++.-+..+.
T Consensus 30 ~~~WT~eETd~LfdLc~~f--d---------lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRF--D---------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHT--T---------TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHc--C---------CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3679999999998999999 3 59999999874 6999999999999888776543
No 65
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.88 E-value=0.0031 Score=41.27 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
-|||+||..++|.+ +++|| ..|..|
T Consensus 9 ~~WT~eED~~L~~~-v~~~G~~~W~~I 34 (60)
T 1x41_A 9 PSWTAQEEMALLEA-VMDCGFGNWQDV 34 (60)
T ss_dssp SSSCHHHHHHHHHH-HHHTCTTCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHCcCcHHHH
Confidence 39999999999999 99999 567543
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.87 E-value=0.017 Score=38.24 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHH-hCCCCCHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIAS-MVPSRSVEELKQHYQIL 59 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~-~VPGKT~~ev~~hY~~L 59 (159)
..+|.+||+++-..|+.| ...+.+-..+.-|..||+ .+|..|-..+++||..-
T Consensus 3 ~~FT~edD~~L~~~v~~~--~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 3 IAFTDADDVAILTYVKEN--ARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCHHHHHHHHHHHHHT--CCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--ccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 479999999999999999 432111113368999999 89999999999999864
No 67
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.70 E-value=0.0048 Score=41.24 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=24.6
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 129 ERRKGIPWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 129 ~rkkg~pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
.|++..|||+||-.+.+.+ +++|| ..|..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~-v~~~G~~~W~~I 36 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSG-VRKYGEGNWSKI 36 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHH-HHHHCSSCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHH-HHHHCCCcHHHH
Confidence 3566679999999999999 99999 466543
No 68
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.52 E-value=0.0056 Score=42.35 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=21.2
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHhhcc
Q 031444 130 RRKGIPWTEEEHRQIWKRRLEKHFKK 155 (159)
Q Consensus 130 rkkg~pWteeEHr~fl~g~l~k~gk~ 155 (159)
+...-|||.||.++|+.. |++||++
T Consensus 15 ~~~~~~WT~eEd~~L~~a-l~~~g~~ 39 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELA-LQQYPRG 39 (73)
T ss_dssp TCSSCCCCHHHHHHHHHH-HHHSCSS
T ss_pred ccCCCCCCHHHHHHHHHH-HHHcCCC
Confidence 345569999999999999 9999953
No 69
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=95.46 E-value=0.0062 Score=38.42 Aligned_cols=25 Identities=36% Similarity=0.538 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc-cccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKK-FCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~-~~~~ 159 (159)
-|||+||..+++.. +++||.+ |..|
T Consensus 4 ~~Wt~eED~~L~~~-v~~~G~~~W~~I 29 (52)
T 1gvd_A 4 GPWTKEEDQRLIKL-VQKYGPKRWSVI 29 (52)
T ss_dssp CSCCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHCcChHHHH
Confidence 39999999999999 9999974 7643
No 70
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=95.38 E-value=0.007 Score=38.47 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
-|||+||..+.+.+ +++|| ..|..|
T Consensus 3 ~~WT~eEd~~L~~~-v~~~G~~~W~~I 28 (53)
T 1w0t_A 3 QAWLWEEDKNLRSG-VRKYGEGNWSKI 28 (53)
T ss_dssp CCCCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence 49999999999999 99999 466543
No 71
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=95.29 E-value=0.0074 Score=37.96 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHHHhhc-ccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFK-KFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk-~~~~~ 159 (159)
.|||+||..+.+.. +++||. .|..|
T Consensus 4 ~~Wt~eED~~L~~~-v~~~G~~~W~~I 29 (52)
T 1guu_A 4 TRWTREEDEKLKKL-VEQNGTDDWKVI 29 (52)
T ss_dssp CCCCHHHHHHHHHH-HHHHCSSCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHhCCCCHHHH
Confidence 49999999999999 999998 56543
No 72
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.14 E-value=0.011 Score=44.72 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=25.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHHHHHhhc-ccccC
Q 031444 128 QERRKGIPWTEEEHRQIWKRRLEKHFK-KFCDI 159 (159)
Q Consensus 128 ~~rkkg~pWteeEHr~fl~g~l~k~gk-~~~~~ 159 (159)
..|++--|||+||-...+.| +++||. .|.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~g-V~k~G~g~W~~I 57 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEA-VEHLGTGRWRDV 57 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHH-HHHHSSSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHH-HHHHCCCChHHH
Confidence 45666779999999999999 999998 56543
No 73
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=95.13 E-value=0.0089 Score=39.97 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhc-ccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFK-KFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk-~~~~~ 159 (159)
.|||+||-.+.+.+ +++||. -|..|
T Consensus 12 ~~WT~eED~~L~~~-V~~~G~~~W~~I 37 (64)
T 3sjm_A 12 QKWTVEESEWVKAG-VQKYGEGNWAAI 37 (64)
T ss_dssp CCCCHHHHHHHHHH-HHHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHH-HHccCCCchHHH
Confidence 48999999999999 999995 46543
No 74
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.09 E-value=0.09 Score=35.78 Aligned_cols=52 Identities=19% Similarity=0.284 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHhhhcccCC-CChHHHhHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEED-DSKEEQQQQWQKIASM--VPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~-~~p~~~~drWekIA~~--VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
-.||.|....|..|+.++ ..+ .+| .+|... |||.|..+|+.|-|...-.++.
T Consensus 8 ~~WT~elH~~Fv~Av~~L--G~~~AtP-------k~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 8 VLWTHELHNKFLAAVDHL--GVERAVP-------KKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CSSCHHHHHHHHHHHHHH--CTTTCCH-------HHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CcCCHHHHHHHHHHHHHh--CCCCCCc-------HHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 469999999999999999 632 245 666655 6799999999999887766553
No 75
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.94 E-value=0.043 Score=48.48 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQILLE 61 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L~e 61 (159)
..||+.+=..|-+|++.| +.+ .-+.||+.|. |||++||++.++.+.+
T Consensus 124 ~~WnrrDF~~FI~a~~ky--GR~--------d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKY--GRN--------SIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHH--CTT--------CHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHh--CHh--------HHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 569999999999999999 765 4489999998 9999999977776654
No 76
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=94.85 E-value=0.016 Score=43.75 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=25.9
Q ss_pred hhhhcCCCCCCHHHHHHHHHHHHHHhhc-ccccC
Q 031444 127 EQERRKGIPWTEEEHRQIWKRRLEKHFK-KFCDI 159 (159)
Q Consensus 127 ~~~rkkg~pWteeEHr~fl~g~l~k~gk-~~~~~ 159 (159)
...|++--|||+||-...+.| +++||. .|.+|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~g-V~k~G~G~W~~I 43 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEA-VEHLGTGRWRDV 43 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHH-HHHHGGGCHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHH-HHHHCCCCHHHH
Confidence 345666679999999999999 999998 55543
No 77
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.77 E-value=0.04 Score=38.00 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcc--cCCCChHHHhHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHh
Q 031444 4 AATWSREEDKAFENAIAMHCI--EEDDSKEEQQQQWQKIASMVP----SRSVEELKQHYQILLEDVNAIEA 68 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~--~~~~~p~~~~drWekIA~~VP----GKT~~ev~~hY~~L~eDV~~IEs 68 (159)
...||.+|-++|-.+...... ... . .....|+.||..|- .+|+.||+..++.|...-+.|-.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~-~--~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTS-K--SNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHS-S--CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHcc-c--cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999876410 111 1 11268999999865 69999999999999999877755
No 78
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.67 E-value=0.022 Score=39.16 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhccc
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKKF 156 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~~ 156 (159)
-+||+||+++|... |.+|++|-
T Consensus 9 ~~WT~eE~k~fe~a-l~~~p~~t 30 (72)
T 2cqq_A 9 PEWTEEDLSQLTRS-MVKFPGGT 30 (72)
T ss_dssp CCCCHHHHHHHHHH-HHHSCTTC
T ss_pred CCCCHHHHHHHHHH-HHHCCCCC
Confidence 38999999999999 99999763
No 79
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=94.42 E-value=0.017 Score=37.35 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
.|||+||..+.+.. +++|| +.|..|
T Consensus 9 ~~Wt~eED~~L~~~-v~~~G~~~W~~I 34 (60)
T 2d9a_A 9 VKWTHEEDEQLRAL-VRQFGQQDWKFL 34 (60)
T ss_dssp SCCCHHHHHHHHHH-HHHTCTTCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHhCCCCHHHH
Confidence 49999999999999 99999 577643
No 80
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.64 E-value=0.039 Score=38.38 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHhhcc
Q 031444 135 PWTEEEHRQIWKRRLEKHFKK 155 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~gk~ 155 (159)
+||+||+++|+.+ |.+|+++
T Consensus 10 ~WT~eE~k~fe~A-La~~~~~ 29 (73)
T 1wgx_A 10 EWNEKELQKLHCA-FASLPKH 29 (73)
T ss_dssp CCCHHHHHHHHHH-HHHSCSS
T ss_pred CCCHHHHHHHHHH-HHHCCCC
Confidence 7999999999999 9999986
No 81
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.23 E-value=0.042 Score=36.54 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHhh-cccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHF-KKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~g-k~~~~~ 159 (159)
-|||+||..+.+.. +++|| ..|..|
T Consensus 10 ~~Wt~eED~~L~~~-v~~~G~~~W~~I 35 (70)
T 2dim_A 10 GVWRNTEDEILKAA-VMKYGKNQWSRI 35 (70)
T ss_dssp CCCCHHHHHHHHHH-HHHTCSSCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHCcCCHHHH
Confidence 39999999999999 99999 566543
No 82
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=92.96 E-value=0.035 Score=38.32 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
-|||+||-.+.|.- .++||..|..|
T Consensus 24 ~~wT~EED~~L~~l-~~~~G~kW~~I 48 (73)
T 2llk_A 24 GKYTPEEIEKLKEL-RIKHGNDWATI 48 (73)
T ss_dssp CSSCHHHHHHHHHH-HHHHSSCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHHCCCHHHH
Confidence 39999999999999 99999998765
No 83
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.88 E-value=0.046 Score=35.96 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhcccccC
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKKFCDI 159 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~~~~~ 159 (159)
-|||.||..++|.. .++||..|..|
T Consensus 10 ~~WT~eED~~L~~~-~~~~g~~W~~I 34 (66)
T 2din_A 10 TEWSREEEEKLLHL-AKLMPTQWRTI 34 (66)
T ss_dssp CCCCHHHHHHHHHH-HHHCTTCHHHH
T ss_pred CCCCHHHHHHHHHH-HHHcCCCHHHH
Confidence 38999999999999 99999988654
No 84
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=92.68 E-value=0.063 Score=38.61 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHHhhcc
Q 031444 135 PWTEEEHRQIWKRRLEKHFKK 155 (159)
Q Consensus 135 pWteeEHr~fl~g~l~k~gk~ 155 (159)
|||.||.++|+.. |.+||++
T Consensus 10 ~WT~eEd~~L~~a-l~~~~~~ 29 (93)
T 2cjj_A 10 PWSAKENKAFERA-LAVYDKD 29 (93)
T ss_dssp SCCHHHHHHHHHH-HHHSCTT
T ss_pred CCCHHHHHHHHHH-HHHcCCC
Confidence 8999999999999 9999865
No 85
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.91 E-value=0.35 Score=41.46 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHh------------CCCCCHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASM------------VPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~------------VPGKT~~ev~~hY~~L~eDV 63 (159)
...||.+||+.|-.+|-.| .-+ .+ +.|++|-.. +-.+|+.||.+|-..|+.-|
T Consensus 212 ~k~yteeEDRfLL~~l~k~--G~~-~~----g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKL--GFD-KE----NVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTT-ST----THHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHh--cCC-Cc----chHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 4679999999999999999 876 77 899999744 34699999999999998655
No 86
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=91.01 E-value=0.057 Score=37.92 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=19.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccc
Q 031444 132 KGIPWTEEEHRQIWKRRLEKHFKKF 156 (159)
Q Consensus 132 kg~pWteeEHr~fl~g~l~k~gk~~ 156 (159)
.+.+||.||.++|... |.+|.++.
T Consensus 19 ss~~WT~eE~K~FE~A-La~yp~~t 42 (74)
T 4eef_G 19 SGRPWKFSENIAFEIA-LSFTNKDT 42 (74)
T ss_dssp ---CCCTTHHHHHHHH-TSSSCSSC
T ss_pred CCCCCCHHHHHHHHHH-HHHCCCCC
Confidence 3558999999999999 99999963
No 87
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.29 E-value=0.79 Score=38.54 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHh--CCCCCHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASM--VPSRSVEELKQHYQILLED 62 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~--VPGKT~~ev~~hY~~L~eD 62 (159)
..||..|-..|..|+..| +.- . +||+.|+.- |+.|+..++++-|+.|++-
T Consensus 4 ~~ltekEiR~l~Ra~~kf--G~~--~----~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 4 GSIGESEVRALYKAILKF--GNL--K----EILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp CCCCHHHHHHHHHHHHHH--SSC--T----TCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--CCH--H----HHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 569999999999999999 642 3 699999754 6789999999999877653
No 88
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=89.23 E-value=0.91 Score=38.09 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHH----------HHHhCCCCCCCC
Q 031444 36 QWQKIASMVPSRSVEELKQHYQILLEDVN----------AIEAGNIPLPNY 76 (159)
Q Consensus 36 rWekIA~~VPGKT~~ev~~hY~~L~eDV~----------~IEsG~vplP~y 76 (159)
.|..||+..|+.|..-.+.||..++.+.. .|+.|.+|=|--
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~gi~~yi~yye~~~~~~~~p~~~k 223 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAYGIDDYISYYEAEKAQNREPEPMK 223 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHHCHHHHHHHHHTC-------CCCC
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhcChHHHHHHHHHHHhcCCCCcccc
Confidence 89999999999999999999998887751 245677775543
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=76.31 E-value=4 Score=35.97 Aligned_cols=57 Identities=23% Similarity=0.208 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHh------------CCCCCHHHHHHHHHHHHHHHHHHHhCC
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASM------------VPSRSVEELKQHYQILLEDVNAIEAGN 70 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~------------VPGKT~~ev~~hY~~L~eDV~~IEsG~ 70 (159)
...||.+||+.+-.+|-.| .-+ .+ +.|++|-.. +-.+|+.|+.+|-..|+.- ||.-.
T Consensus 228 ~k~yteeEDRfLL~~l~k~--G~~-~~----g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~---IeKE~ 296 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKY--GLD-RD----DVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC---LEKEF 296 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHH--TTC-SS----CCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH---HHTTT
T ss_pred CCccCHHHHHHHHHHHHHh--ccC-CC----ChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH---HHHHh
Confidence 5689999999999999999 765 66 889999666 3469999999999999854 45543
No 90
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=74.08 E-value=5.6 Score=29.11 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHH-HHhCCCCCCCCC
Q 031444 35 QQWQKIASMVPSRS----VEELKQHYQILLEDVNA-IEAGNIPLPNYV 77 (159)
Q Consensus 35 drWekIA~~VPGKT----~~ev~~hY~~L~eDV~~-IEsG~vplP~y~ 77 (159)
..|..||..+.--+ ...++.+|..++..... ++.|..|.|...
T Consensus 73 ~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~g~~~p~~i~ 120 (125)
T 2cxy_A 73 KKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVF 120 (125)
T ss_dssp TCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHHHHHCCCCCCSCC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCCCChhHh
Confidence 57999999986332 57899999999988876 489999988765
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=71.69 E-value=11 Score=29.08 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC------------CC--CHHHHHHHHHHHHHHH
Q 031444 4 AATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP------------SR--SVEELKQHYQILLEDV 63 (159)
Q Consensus 4 ~~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP------------GK--T~~ev~~hY~~L~eDV 63 (159)
+..||.++|+.+-.++.+| +- .+|+.|-...- .| +..++.+|-..|+.-+
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~--G~--------g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEY--GY--------GSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHH--CT--------TCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHH--Cc--------CcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 4579999999999999999 53 57999987431 23 3678999987776644
No 92
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=69.53 E-value=8.2 Score=29.54 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 8 SREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 8 T~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
.-++..+||..+|...++-. .--+--=..||.++-|||++|+++.|.
T Consensus 100 ~vd~~~LfeLi~AAnyLdIk---~Lldl~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 100 KVDQEMLYEIILAANYLNIK---PLLDAGCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp CSCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 34578999999999865532 111122368999999999999998775
No 93
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=61.83 E-value=11 Score=27.73 Aligned_cols=50 Identities=18% Similarity=0.380 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 10 EEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 10 eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
+++.+||..+|...++-. .--+--=..||.++-|||++|+++.|.. ..|.
T Consensus 90 d~~~l~eLi~AAnyL~I~---~Lldl~c~~vA~~ikgkt~eeiR~~f~I-~~d~ 139 (141)
T 1fs1_B 90 DQGTLFELILAANYLDIK---GLLDVTCKTVANMIKGKTPEEIRKTFNI-KNDF 139 (141)
T ss_dssp CHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHTTCCHHHHHHHTC------
T ss_pred CHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHcCCCHHHHHHHcCC-CCCC
Confidence 577899999988755532 1111122689999999999999988753 4443
No 94
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=61.54 E-value=16 Score=25.70 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHHHHhC
Q 031444 35 QQWQKIASMVPSRS----VEELKQHYQILLEDVNAIEAG 69 (159)
Q Consensus 35 drWekIA~~VPGKT----~~ev~~hY~~L~eDV~~IEsG 69 (159)
..|..||..+.--+ ...++.+|..++.......+|
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~~~~~ 104 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG 104 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhc
Confidence 57999999995322 579999999999888776665
No 95
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=61.41 E-value=7.3 Score=29.32 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 8 SREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 8 T~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
.-+++.+||..+|...++-. .--+--=..||.++-|||++|+++-|.
T Consensus 92 ~vd~~~l~eLi~AAnyL~I~---~Lldl~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 92 KIDQATLFELILAANYLNIK---NLLDLTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp ---------CHHHHHHTTCH---HHHHHHHHHHHHTTTTCCHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 56788899999988855532 111122268999999999999998775
No 96
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=59.88 E-value=5 Score=27.80 Aligned_cols=36 Identities=25% Similarity=0.508 Sum_probs=27.1
Q ss_pred hHHHHHHHHhCCC---CC-HHHHHHHHHHHHHHHHHHHhC
Q 031444 34 QQQWQKIASMVPS---RS-VEELKQHYQILLEDVNAIEAG 69 (159)
Q Consensus 34 ~drWekIA~~VPG---KT-~~ev~~hY~~L~eDV~~IEsG 69 (159)
+..|..||..+.- .| ...++.+|..++.......+|
T Consensus 57 ~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~yE~~~~g 96 (96)
T 2jxj_A 57 EKKWSKVGSRLGYLPGKGTGSLLKSHYERILYPYELFQSG 96 (96)
T ss_dssp HTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHHHHHHCC
T ss_pred CCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 3689999999752 22 678999999888877666554
No 97
>1z0p_A Hypothetical protein SPY1572; structural genomics, PSI, protein ST initiative, midwest center for structural genomics, MCSG, U function; 1.70A {Streptococcus pyogenes} SCOP: a.2.18.1
Probab=58.32 E-value=5.2 Score=28.37 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHHHh--hcccccC
Q 031444 143 QIWKRRLEKH--FKKFCDI 159 (159)
Q Consensus 143 ~fl~g~l~k~--gk~~~~~ 159 (159)
+||+|....| ||||.|+
T Consensus 56 qFl~gKF~Ny~~GK~FHd~ 74 (84)
T 1z0p_A 56 EFLLGKFDNYKNGKAFHDI 74 (84)
T ss_dssp HHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHhhhhcCCCcccC
Confidence 7999966654 8999875
No 98
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.98 E-value=36 Score=24.68 Aligned_cols=36 Identities=25% Similarity=0.514 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHHHHhCC
Q 031444 35 QQWQKIASMVPSRS----VEELKQHYQILLEDVNAIEAGN 70 (159)
Q Consensus 35 drWekIA~~VPGKT----~~ev~~hY~~L~eDV~~IEsG~ 70 (159)
..|..||..+.-.+ ...++.+|..++.......+|.
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~~~ 103 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFLSGD 103 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHHhcC
Confidence 58999999985322 4789999999999998888774
No 99
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=53.33 E-value=13 Score=27.93 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=32.8
Q ss_pred hHHHHHHHHhCCC-C----CHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031444 34 QQQWQKIASMVPS-R----SVEELKQHYQILLEDVNAIEAGNIPLP 74 (159)
Q Consensus 34 ~drWekIA~~VPG-K----T~~ev~~hY~~L~eDV~~IEsG~vplP 74 (159)
+..|..||..+.- . ....++.+|..++.......+|..+.+
T Consensus 85 ~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~ 130 (145)
T 2kk0_A 85 KKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPN 130 (145)
T ss_dssp HTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHH
T ss_pred cCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 3679999999852 1 257899999999999999999866543
No 100
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=45.92 E-value=17 Score=26.28 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCCC----HHHHHHHHHHHHHHHHHHHhCC
Q 031444 35 QQWQKIASMVPSRS----VEELKQHYQILLEDVNAIEAGN 70 (159)
Q Consensus 35 drWekIA~~VPGKT----~~ev~~hY~~L~eDV~~IEsG~ 70 (159)
..|..||..+.--+ ...++.+|..++.......+|.
T Consensus 62 ~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~~~~~ 101 (117)
T 2jrz_A 62 RRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGA 101 (117)
T ss_dssp TTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999985322 6789999999999988877764
No 101
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=43.87 E-value=40 Score=24.47 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCC-C----CHHHHHHHHHHHHHHHHHHHhCCCC
Q 031444 35 QQWQKIASMVPS-R----SVEELKQHYQILLEDVNAIEAGNIP 72 (159)
Q Consensus 35 drWekIA~~VPG-K----T~~ev~~hY~~L~eDV~~IEsG~vp 72 (159)
..|..||..+.- . ....++.+|..++.......++..+
T Consensus 74 k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~~~~~ 116 (128)
T 1c20_A 74 KLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLST 116 (128)
T ss_dssp TTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHHHCCSC
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 579999999852 2 2678999999999999888876543
No 102
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=43.38 E-value=32 Score=25.53 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHH
Q 031444 10 EEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQ 57 (159)
Q Consensus 10 eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~ 57 (159)
.++.+|+..+|...++-. .-.+--=..||.++-|||++|+++.|.
T Consensus 95 d~~~l~eLl~AAnyL~I~---~Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 95 DQGTLFELILAANYLDIK---GLLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp CHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 467899999988754432 111122257999999999999998875
No 103
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.40 E-value=29 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
..|..||..+.--+...++.+|..++.....
T Consensus 70 k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 6999999998755689999999999988754
No 104
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=42.05 E-value=30 Score=25.87 Aligned_cols=41 Identities=20% Similarity=0.452 Sum_probs=33.8
Q ss_pred HHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031444 32 EQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLP 74 (159)
Q Consensus 32 ~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP 74 (159)
+.+.-|-++... -|+++.+..+|..+..++..||.|.++-|
T Consensus 5 eeE~~lK~L~~v--eksv~~~~kkl~~~~~el~~iekGFL~ke 45 (114)
T 1hx1_B 5 QEEVELKKLKHL--EKSVEKIADQLEELNKELTGIQQGFLPKD 45 (114)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccH
Confidence 344558887753 59999999999999999999999998744
No 105
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=41.60 E-value=26 Score=24.27 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=23.6
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
...|+.-.+ +.|.|.+|.++.|-.|++.+
T Consensus 55 ~aKw~AW~~-l~gms~eeA~~~YI~~v~~l 83 (89)
T 1hbk_A 55 RKKYEAWKS-VENLNREDAQKRYVDIVSEI 83 (89)
T ss_dssp HHHHHHHHH-TTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHHHHH
Confidence 345666554 58999999999999999987
No 106
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=39.75 E-value=18 Score=30.29 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhcc
Q 031444 134 IPWTEEEHRQIWKRRLEKHFKK 155 (159)
Q Consensus 134 ~pWteeEHr~fl~g~l~k~gk~ 155 (159)
++|+.+|-...|+| +-|||=|
T Consensus 169 c~W~~~dD~~LLvG-IykyGyG 189 (270)
T 2xb0_X 169 SNWTKEEDEKLLIG-VFKYGYG 189 (270)
T ss_dssp SCCCHHHHHHHHHH-HHHHCTT
T ss_pred CCcChHHHHHHHHH-HHHHcCC
Confidence 57999999999999 9999976
No 107
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=36.85 E-value=36 Score=23.48 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=25.0
Q ss_pred HhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 33 QQQQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 33 ~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
....|+.-.+ +.|.|.+|.++.|-.|++.+..
T Consensus 52 ~~aKw~AW~~-l~gms~eeA~~~Yi~~v~~l~~ 83 (87)
T 2cb8_A 52 GKAKWDAWNE-LKGTSKEDAMKAYINKVEELKK 83 (87)
T ss_dssp HHHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHH
Confidence 3345666554 5899999999999999998853
No 108
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=36.74 E-value=25 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=20.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcccCC
Q 031444 3 SAATWSREEDKAFENAIAMHCIEED 27 (159)
Q Consensus 3 ~~~~WT~eEdK~FE~ALa~~~~~~~ 27 (159)
....|+.+=..+|..||+.| |+.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~y--p~~ 27 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIY--PPC 27 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHS--CSS
T ss_pred cCCcCCHHHHHHHHHHHHHc--CCC
Confidence 35689999999999999999 765
No 109
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=34.57 E-value=28 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.474 Sum_probs=24.1
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
...|+.-.+ +.|.|.+|.++.|-.|++++.
T Consensus 52 raKw~AW~~-l~gms~eeA~~~YI~~v~~l~ 81 (86)
T 1st7_A 52 RYKWEAWEN-LKGKSQEDAEKEYIALVDQLI 81 (86)
T ss_dssp HHHHHHHHT-TTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHHHHHHh
Confidence 345666554 589999999999999999875
No 110
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.48 E-value=37 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..|+.-.+ +.|.|.+|.++.|-.||+.+
T Consensus 60 aKw~AW~~-l~gms~eeAm~~YI~lv~~l 87 (109)
T 2cop_A 60 QKWEAWKA-LGDSSPSQAMQEYIAVVKKL 87 (109)
T ss_dssp HHHHHHHS-CTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHH
Confidence 45766654 58999999999999999987
No 111
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=32.44 E-value=44 Score=23.24 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=24.5
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
...|+.=.+ +.|.|.+|.++.|-.|++.+..
T Consensus 55 ~aKw~AW~~-l~g~s~eeA~~~Yi~~v~~l~~ 85 (89)
T 3epy_A 55 KAKWEAWNL-KKGLSTEDATSAYISKAKELIE 85 (89)
T ss_dssp HHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hhCCCHHHHHHHHHHHHHHHhh
Confidence 345665554 6899999999999999998753
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.87 E-value=19 Score=25.82 Aligned_cols=57 Identities=16% Similarity=0.341 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHhhhcccCCCCh---------------------------H--HHhHHHHHHHHhCCCCCHHHHHHHHHH
Q 031444 8 SREEDKAFENAIAMHCIEEDDSK---------------------------E--EQQQQWQKIASMVPSRSVEELKQHYQI 58 (159)
Q Consensus 8 T~eEdK~FE~ALa~~~~~~~~~p---------------------------~--~~~drWekIA~~VPGKT~~ev~~hY~~ 58 (159)
+.++.+.|-..|..||-... +| + ..+..|..||..+.--+...++.+|..
T Consensus 16 ~~~~~~~F~~~L~~F~~~~G-~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k 94 (116)
T 2li6_A 16 NNKQYELFMKSLIENCKKRN-MPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFR 94 (116)
T ss_dssp SHHHHHHHHHHHHHHHHTTT-SCCSSCCCCBSCCCSTTHHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcC-CCCCCCceECCEeecHHHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHH
Confidence 45677888888888862111 11 0 123579999999875557899999998
Q ss_pred HHHHHHH
Q 031444 59 LLEDVNA 65 (159)
Q Consensus 59 L~eDV~~ 65 (159)
++.....
T Consensus 95 ~L~~yE~ 101 (116)
T 2li6_A 95 ILLPYER 101 (116)
T ss_dssp HHSHHHH
T ss_pred HHHHHHH
Confidence 8876644
No 113
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=30.95 E-value=88 Score=22.14 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.0
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 34 QQQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 34 ~drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
...|+.-.+ +.|.|.+|.++.|-.|++.+.
T Consensus 62 raKw~AW~~-l~gmS~eeAm~~YI~lv~~l~ 91 (96)
T 2lbb_A 62 KYKWEAWNA-LRGMSTESAKEAYVKLLDTLA 91 (96)
T ss_dssp HHHHHHHHH-TTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHHHHHh
Confidence 345666654 589999999999999999873
No 114
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.58 E-value=1.3e+02 Score=20.14 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV 63 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV 63 (159)
..||.++-..+... + .. . +-++-+. .-++-|..||++.|..|+.-.
T Consensus 10 ~~~s~~~~~~~~~~---~--~~---~----~~y~iLg-v~~~as~~eIk~aYr~la~~~ 55 (90)
T 2ys8_A 10 ASFTKEQADAIRRI---R--NS---K----DSWDMLG-VKPGASRDEVNKAYRKLAVLL 55 (90)
T ss_dssp CCCCHHHHHHHHHH---H--TC---S----SHHHHHT-CCTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH---h--cC---C----CHHHHcC-cCCCCCHHHHHHHHHHHHHHH
Confidence 35888887766654 3 21 1 3444443 334788899999999887654
No 115
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=29.30 E-value=33 Score=26.28 Aligned_cols=41 Identities=22% Similarity=0.399 Sum_probs=32.1
Q ss_pred HHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 031444 32 EQQQQWQKIASMVPSRSVEELKQHYQILLEDVNAIEAGNIPLP 74 (159)
Q Consensus 32 ~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~IEsG~vplP 74 (159)
+.+.-|-++... -||+..+..+|..|..++..||.|.++-|
T Consensus 15 eee~~lKkL~dv--eksv~~~~k~l~~l~~el~~iekGFL~k~ 55 (135)
T 1i6z_A 15 EEEVELKKLKDL--EVSAEKIANHLQELNKELSGIQQGFLAKE 55 (135)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 344556666543 58899999999999999999999987643
No 116
>1d2z_B Death domain of tube; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2
Probab=28.34 E-value=20 Score=28.04 Aligned_cols=35 Identities=23% Similarity=0.520 Sum_probs=23.6
Q ss_pred hHHHHHHHHhCC-CCCHHHHH------------HHHHHHHHHHHHHHh
Q 031444 34 QQQWQKIASMVP-SRSVEELK------------QHYQILLEDVNAIEA 68 (159)
Q Consensus 34 ~drWekIA~~VP-GKT~~ev~------------~hY~~L~eDV~~IEs 68 (159)
++.|.+++..|| +-...+|+ ...+.=.++|..||.
T Consensus 29 ~d~WkkLm~~Ipk~l~~~~~~~~~~~~~~~~~~~~~kY~~~~i~~ie~ 76 (153)
T 1d2z_B 29 NSCWRKLMSIIPKGMDVQACSGAGCLNFPAEIKKGFKYTAQDVFQIDE 76 (153)
T ss_dssp GGHHHHHHHHCBSSCCHHHHHSTTCCCHHHHGGGCBSSCHHHHHHHHH
T ss_pred cchHHHHHHhccccccccccccccccccccccccccCcCHHHHHHHHH
Confidence 499999999999 34555554 222334567777876
No 117
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=27.21 E-value=1.4e+02 Score=21.14 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=36.1
Q ss_pred CCCCCCCCHH-HHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCC-CCCHHHHHHHHHHHHHH
Q 031444 1 MSSAATWSRE-EDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVP-SRSVEELKQHYQILLED 62 (159)
Q Consensus 1 ms~~~~WT~e-EdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VP-GKT~~ev~~hY~~L~eD 62 (159)
|.....|-.. +.+++ ..|... ..- ++ ..||..+. |-|..-|.+|-+.|++.
T Consensus 4 M~~~~~~md~~d~~IL-~~L~~~--g~~-s~-------~eLA~~l~~giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 4 MRQSGSWMTIWDDRIL-EIIHEE--GNG-SP-------KELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCBCCTTCCHHHHHHH-HHHHHH--SCB-CH-------HHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred hhhhhhhcCHHHHHHH-HHHHHc--CCC-CH-------HHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 3334456444 44554 567776 554 66 88999886 89999999999998754
No 118
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=26.27 E-value=81 Score=22.68 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=25.4
Q ss_pred HhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Q 031444 33 QQQQWQKIASMVPSRSVEELKQHYQILLEDVNAI 66 (159)
Q Consensus 33 ~~drWekIA~~VPGKT~~ev~~hY~~L~eDV~~I 66 (159)
....|+.-.+ +.|.|.+|.++.|-.|++.+..-
T Consensus 58 ~raKw~AW~~-l~gmS~eeA~~~YI~~v~~l~~~ 90 (106)
T 3fp5_A 58 GKAKWDAWKS-VEGTSKEVAYQKYVEKLLEILKK 90 (106)
T ss_dssp HHHHHHHHHT-TTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHhcc
Confidence 3445665554 57999999999999999988543
No 119
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=22.86 E-value=19 Score=25.34 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCC-C----CHHHHHHHHHHHHHHHHHHHhCC--CCCCC
Q 031444 35 QQWQKIASMVPS-R----SVEELKQHYQILLEDVNAIEAGN--IPLPN 75 (159)
Q Consensus 35 drWekIA~~VPG-K----T~~ev~~hY~~L~eDV~~IEsG~--vplP~ 75 (159)
..|..||..+.- . ....++.+|...+......-+|. .|+|-
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~ 102 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPP 102 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 589999999852 1 23689999999887766555543 44553
No 120
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=22.19 E-value=2e+02 Score=20.50 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVNA 65 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~~ 65 (159)
..|+.-.+ +.|.|.+|.++.|-.|++.+..
T Consensus 64 aKw~AW~~-l~gms~eeA~~~YI~~v~~l~~ 93 (106)
T 2wh5_A 64 YKWDAWNS-LGKMSREEAMSAYITEMKLVAQ 93 (106)
T ss_dssp HHHHHHHT-TTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHHH
Confidence 46776654 5899999999999999998754
No 121
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.09 E-value=1.6e+02 Score=21.41 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q 031444 35 QQWQKIASMVPSRSVEELKQHYQILLEDVN 64 (159)
Q Consensus 35 drWekIA~~VPGKT~~ev~~hY~~L~eDV~ 64 (159)
..|+.-.+ +.|.|.+|.++.|-.||+.+.
T Consensus 68 aKw~AW~~-l~gms~eeAm~~YI~lv~~l~ 96 (116)
T 2cqu_A 68 AKWDAWNA-LGSLPKEAARQNYVDLVSSLS 96 (116)
T ss_dssp HHHHHHHH-HCSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHc
Confidence 45665554 379999999999999999884
No 122
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.62 E-value=2.1e+02 Score=19.52 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHH----------HHHHhCCCCCC
Q 031444 5 ATWSREEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLEDV----------NAIEAGNIPLP 74 (159)
Q Consensus 5 ~~WT~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~eDV----------~~IEsG~vplP 74 (159)
..=|..|..+|...+.-+ +. ..||..+ |-|..-|+.|...+..-+ ..++.|.++.|
T Consensus 33 ~~Lt~re~~Vl~l~~~G~------s~-------~EIA~~L-~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gli~~~ 98 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAEGF------LV-------TEIAKKL-NRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMTPVD 98 (99)
T ss_dssp SSCCHHHHHHHHHHHHTC------CH-------HHHHHHH-TSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCSSCC
T ss_pred CCCCHHHHHHHHHHHcCC------CH-------HHHHHHH-CcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCC
Confidence 345778888886643222 33 7899987 789999998887665433 33566777655
No 123
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=20.56 E-value=1.5e+02 Score=19.38 Aligned_cols=45 Identities=7% Similarity=0.134 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhcccCCCChHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 031444 9 REEDKAFENAIAMHCIEEDDSKEEQQQQWQKIASMVPSRSVEELKQHYQILLE 61 (159)
Q Consensus 9 ~eEdK~FE~ALa~~~~~~~~~p~~~~drWekIA~~VPGKT~~ev~~hY~~L~e 61 (159)
.+.+...-.+|..- +++ .. -.=..||..+ |.|...|.+|-..|.+
T Consensus 13 ~~~~~~IL~~L~~~--~~~-~~----~t~~eLA~~L-gvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 13 QDQEQRILKFLEEL--GEG-KA----TTAHDLSGKL-GTPKKEINRVLYSLAK 57 (77)
T ss_dssp HHHHHHHHHHHHHH--CSS-SC----EEHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCC-CC----cCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 34444444778887 632 11 1227899998 7999999999888764
Done!