BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031445
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 27 DCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNTVKSQ----PQCLCEVIKGGGSSASSL 82
+C V M PCL Y+ G ++Q Q +C +KG +L
Sbjct: 2 NCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNL 61
Query: 83 GINVNQTQAMALPSACNVQTP 103
+N A ++PS CNV P
Sbjct: 62 NLN----NAASIPSKCNVNVP 78
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 27 DCNNVLISMSPCLDYITGNXXXXXXXXXXXXXNTVKSQ----PQCLCEVIKGGGSSASSL 82
+C V M PCL Y+ G ++Q Q +C +KG +L
Sbjct: 2 NCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNL 61
Query: 83 GINVNQTQAMALPSACNVQTP 103
+N A ++PS CNV P
Sbjct: 62 NLN----NAASIPSKCNVNVP 78
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 10/81 (12%)
Query: 28 CNNVLISMSPCLDYITGNXXXX-----XXXXXXXXXNTVKSQPQCLCEVIKGGGSSASSL 82
C V +SPCL Y+TG NT + Q C +K S + L
Sbjct: 4 CGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDR-QAACNCLKSAAGSITKL 62
Query: 83 GINVNQTQAMALPSACNVQTP 103
N A ALP C V P
Sbjct: 63 ----NTNNAAALPGKCGVNIP 79
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 27 DCNNVLISMSPCLDYITGNXXXXXX--XXXXXXXNTVKSQ--PQCLCEVIKGGGSSASSL 82
DC +V + PCL Y+ G N +SQ Q C +KG +
Sbjct: 2 DCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKG-----IAR 56
Query: 83 GI-NVNQTQAMALPSACNVQTP 103
GI N+N+ A ++P C V P
Sbjct: 57 GIHNLNEDNARSIPPKCGVNLP 78
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 27 DCNNVLISMSPCLDYITGNXXXXXX--XXXXXXXNTVKSQ--PQCLCEVIKGGGSSASSL 82
DC +V + PCL Y+ G N +SQ Q C +KG +
Sbjct: 2 DCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKG-----IAR 56
Query: 83 GI-NVNQTQAMALPSACNVQTP 103
GI N+N+ A ++P C V P
Sbjct: 57 GIHNLNEDNARSIPPKCGVNLP 78
>pdb|3VR8|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VR8|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum
pdb|3VRB|A Chain A, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
pdb|3VRB|E Chain E, Mitochondrial Rhodoquinol-Fumarate Reductase From The
Parasitic Nematode Ascaris Suum With The Specific
Inhibitor Flutolanil And Substrate Fumarate
Length = 645
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 66 QCLCEVIKGGGSSASSLGINVNQTQAMALPSACNVQTPPVSRCNAASPNSPSGNGSKTVP 125
+C C + G A+ LG N + A+ AC++ + + P P G G +++
Sbjct: 421 ECACHSVHG----ANRLGAN-SLLDAVVFGRACSINIKEELKPDEKIPELPEGAGEESIA 475
Query: 126 STNRVDSSNA 135
+ + V +N
Sbjct: 476 NLDAVRYANG 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.126 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,721,412
Number of Sequences: 62578
Number of extensions: 115720
Number of successful extensions: 190
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)