BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031446
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
          Kinase 1 (Ask1) With Imidazopyridine Inhibitor
 pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
          Kinase 1 (Ask1) With Imidazopyridine Inhibitor
          Length = 269

 Score = 27.3 bits (59), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 5  EKDKPVIPPVQPNVGLDMVLKH--MIQYVEKTARRGSIKLFRTQSP 48
          E+D     P+   + L   LKH  ++QY+   +  G IK+F  Q P
Sbjct: 43 ERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 88


>pdb|4FBA|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine
 pdb|4FBA|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine
 pdb|4FBA|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine
 pdb|4FBA|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine
 pdb|4FBB|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine (amp-incubated)
 pdb|4FBB|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine (amp-incubated)
 pdb|4FBB|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine (amp-incubated)
 pdb|4FBB|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex
          With Adenine (amp-incubated)
 pdb|4FBC|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex
          With Amp
 pdb|4FBC|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex
          With Amp
 pdb|4FBC|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex
          With Amp
 pdb|4FBC|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex
          With Amp
          Length = 282

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 4  FEKDKPVIPPVQPNV 18
          F  ++PV+PPV+PNV
Sbjct: 45 FSHNRPVLPPVEPNV 59


>pdb|4FB9|A Chain A, Structure Of Mutant Rip From Barley Seeds
 pdb|4FB9|B Chain B, Structure Of Mutant Rip From Barley Seeds
 pdb|4FB9|C Chain C, Structure Of Mutant Rip From Barley Seeds
 pdb|4FB9|D Chain D, Structure Of Mutant Rip From Barley Seeds
          Length = 282

 Score = 27.3 bits (59), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 4  FEKDKPVIPPVQPNV 18
          F  ++PV+PPV+PNV
Sbjct: 45 FSHNRPVLPPVEPNV 59


>pdb|4FBH|A Chain A, Structure Of Rip From Barley Seeds
          Length = 281

 Score = 27.3 bits (59), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 4  FEKDKPVIPPVQPNV 18
          F  ++PV+PPV+PNV
Sbjct: 44 FSHNRPVLPPVEPNV 58


>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
           Kinase 5
 pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
           Kinase 5
          Length = 295

 Score = 27.3 bits (59), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 5   EKDKPVIPPVQPNVGLDMVLKH--MIQYVEKTARRGSIKLFRTQSP 48
           E+D     P+   + L   LKH  ++QY+   +  G IK+F  Q P
Sbjct: 57  ERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102


>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
           Endo-1,3-beta-glucanase
 pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
           Endo-1,3-beta-glucanase
 pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
           Endo-1,3-beta-glucanase
 pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
           Endo-1,3-beta-glucanase
          Length = 323

 Score = 25.8 bits (55), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 94  HLYKALKGSDFQILDITHMSEFRADAHPSTAGG 126
           +++ ALKGS+ +I+      +  A A+PS A G
Sbjct: 40  NVFNALKGSNIEIILDVPNQDLEALANPSNANG 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,540,930
Number of Sequences: 62578
Number of extensions: 158677
Number of successful extensions: 206
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)