Query 031448
Match_columns 159
No_of_seqs 192 out of 1152
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 23:00:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 100.0 8.4E-38 2.9E-42 239.7 12.5 127 28-155 1-231 (248)
2 1kca_A Repressor protein CI; g 99.4 2E-12 6.8E-17 86.9 11.2 90 34-156 14-109 (109)
3 1umu_A UMUD'; induced mutagene 99.2 8E-11 2.8E-15 79.6 9.8 88 33-153 27-115 (116)
4 2hnf_A Repressor protein CI101 99.0 2.1E-09 7.2E-14 74.3 10.4 82 34-148 45-132 (133)
5 1jhf_A LEXA repressor; LEXA SO 99.0 3.7E-09 1.3E-13 77.7 11.0 88 34-153 111-200 (202)
6 3bdn_A Lambda repressor; repre 99.0 1.9E-09 6.6E-14 80.8 8.6 90 34-156 141-236 (236)
7 3k2z_A LEXA repressor; winged 98.7 2.5E-07 8.6E-12 67.7 12.3 85 33-150 109-194 (196)
8 2fjr_A Repressor protein CI; g 97.3 0.0019 6.3E-08 46.3 9.2 76 41-152 113-188 (189)
9 3v2d_O 50S ribosomal protein L 76.9 14 0.00047 24.6 8.6 26 113-139 80-105 (122)
10 3r8s_K 50S ribosomal protein L 74.7 16 0.00054 24.3 7.4 28 113-140 80-107 (122)
11 1w4s_A Polybromo, polybromo 1 71.6 4.7 0.00016 28.2 4.1 94 44-148 6-107 (174)
12 3bbo_M Ribosomal protein L14; 70.3 21 0.00071 23.7 7.3 27 113-140 80-106 (121)
13 1whi_A Ribosomal protein L14; 67.0 25 0.00084 23.3 7.4 26 113-139 80-105 (122)
14 4dov_A ORC1, origin recognitio 45.4 74 0.0025 22.1 8.3 78 65-150 38-130 (163)
15 3a2z_A Bifunctional glutathion 44.1 85 0.0029 22.4 7.5 39 64-102 110-149 (197)
16 2vob_A Trypanothione synthetas 39.7 1.1E+02 0.0038 26.1 7.7 39 64-102 110-148 (652)
17 3nx6_A 10KDA chaperonin; bacte 35.4 74 0.0025 20.0 4.6 12 49-60 5-16 (95)
18 2dgy_A MGC11102 protein; EIF-1 33.5 39 0.0013 21.9 3.2 41 36-76 22-64 (111)
19 2pp6_A Gifsy-2 prophage ATP-bi 32.9 94 0.0032 19.8 4.7 39 50-93 49-87 (102)
20 3mea_A SAGA-associated factor 32.4 1.3E+02 0.0045 21.2 6.1 57 64-121 43-103 (180)
21 2coa_A Protein kinase C, D2 ty 26.9 43 0.0015 22.2 2.5 34 114-147 25-62 (125)
22 1jt8_A EIF-1A, probable transl 26.3 26 0.00089 22.4 1.3 12 65-76 58-69 (102)
23 1pcq_O Groes protein; chaperon 26.3 1.2E+02 0.0043 19.0 5.0 12 49-60 5-16 (97)
24 1wid_A DNA-binding protein RAV 25.8 96 0.0033 20.3 4.2 16 64-79 90-105 (130)
25 3pqh_A Gene product 138; beta- 24.1 72 0.0025 21.2 3.2 47 51-100 21-71 (127)
26 3i4o_A Translation initiation 23.9 28 0.00097 21.1 1.1 12 65-76 53-64 (79)
27 1we3_O CPN10(groes); chaperoni 23.4 96 0.0033 19.6 3.6 14 47-60 8-21 (100)
28 2z0t_A Putative uncharacterize 23.3 1.1E+02 0.0037 19.7 3.9 23 63-90 31-53 (109)
29 2d9z_A Protein kinase C, NU ty 23.0 75 0.0026 21.2 3.1 32 114-145 25-60 (129)
30 3mt1_A Putative carboxynorsper 21.8 86 0.0029 24.2 3.8 12 65-76 309-320 (365)
31 2jz2_A SSL0352 protein; SH3-li 20.9 99 0.0034 17.9 2.9 29 91-119 3-34 (66)
32 4dt4_A FKBP-type 16 kDa peptid 20.4 2.2E+02 0.0074 19.6 5.4 34 65-100 112-145 (169)
33 1xne_A Hypothetical protein PF 20.1 1E+02 0.0035 19.9 3.2 23 62-90 31-53 (113)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=100.00 E-value=8.4e-38 Score=239.72 Aligned_cols=127 Identities=35% Similarity=0.472 Sum_probs=108.3
Q ss_pred HhhceEEeEEEeCCCCccccCCCCcEEEEEecccC------------CCCCCCCeEEEEecCCCCCceEEEEEEEeCCCE
Q 031448 28 TNHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHR------------VGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDR 95 (159)
Q Consensus 28 ~~~~~~~~~~v~~~SM~Ptl~~~Gd~vlv~~~~~~------------~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~ 95 (159)
++.|+++.+.|.|+||+|||+ .||++++++..+. ..++++||||+|+.|.+++..++|||+|+|||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~-~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~ 79 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDK 79 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCE
T ss_pred CeEEEEEEEEecccccccccc-CCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCE
Confidence 467899999999999999999 9999999997642 258999999999998777889999999999999
Q ss_pred EEEeCC-------------------CCC--------C-------------------------------------------
Q 031448 96 VTYFKP-------------------RNG--------D------------------------------------------- 105 (159)
Q Consensus 96 v~i~~~-------------------~~~--------~------------------------------------------- 105 (159)
|++++. ... .
T Consensus 80 v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~e~l~~~~ 159 (248)
T 1b12_A 80 VTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVT 159 (248)
T ss_dssp EEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEE
T ss_pred EEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhhHHhhhcCcc
Confidence 998754 100 0
Q ss_pred ----------------------CcceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCC
Q 031448 106 ----------------------SCHTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSF 155 (159)
Q Consensus 106 ----------------------~~~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~~~~ 155 (159)
...+++||+|+|||+|||+.+|.|||+||+||+++|+|||.+++||+++.
T Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~~ 231 (248)
T 1b12_A 160 HRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDKQ 231 (248)
T ss_dssp EEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC--
T ss_pred ceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCcc
Confidence 01256899999999999999999999999999999999999999887743
No 2
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=99.43 E-value=2e-12 Score=86.88 Aligned_cols=90 Identities=26% Similarity=0.339 Sum_probs=70.9
Q ss_pred EeEEEeCCCCc------cccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCc
Q 031448 34 SPTLVFGPSML------PTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSC 107 (159)
Q Consensus 34 ~~~~v~~~SM~------Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~ 107 (159)
....|.|+||+ |++. +||++++++. .+++.||+|++..+. ++..+||+...+
T Consensus 14 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~Vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~--------------- 71 (109)
T 1kca_A 14 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFKKLIRDS--------------- 71 (109)
T ss_dssp EEEECCSSTTCCCTTCSSCCC-TTCEEEEETT----SCCCTTCEEEEECST--TCEEEEEEEEET---------------
T ss_pred EEEEEeCcCcCCCCCCCCeeC-CCCEEEEecC----CcCCCCCEEEEEECC--CeEEEEEEEEeC---------------
Confidence 36789999999 9998 9999999873 369999999998743 478999998754
Q ss_pred ceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCCc
Q 031448 108 HTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFG 156 (159)
Q Consensus 108 ~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~~~~~ 156 (159)
|.+++.+||+... + ... -..-.|+|+|.+.+||...||
T Consensus 72 -------~~~~L~s~N~~y~-~-~~~--~~~~~IiG~Vv~~~~~~~~~~ 109 (109)
T 1kca_A 72 -------GQVFLQPLNPQYP-M-IPC--NESCSVVGKVIASQWPEETFG 109 (109)
T ss_dssp -------TEEEEECSSTTSC-C-EEC--CTTCEEEEEEEEEECCGGGGC
T ss_pred -------CEEEEEECCCCCC-C-EEc--CCCcEEEEEEEEEEeCHHHcC
Confidence 3788999997322 1 211 145789999999999987765
No 3
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=99.23 E-value=8e-11 Score=79.65 Aligned_cols=88 Identities=17% Similarity=0.092 Sum_probs=63.4
Q ss_pred EEeEEEeCCCCcc-ccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEE
Q 031448 33 WSPTLVFGPSMLP-TLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVV 111 (159)
Q Consensus 33 ~~~~~v~~~SM~P-tl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~ 111 (159)
.....|.|+||+| +++ +||++++++. .+++.||+|++..+ ++..+||+...+
T Consensus 27 ~~~~~v~GdSM~p~~i~-~Gd~v~vd~~----~~~~~gdivv~~~~---~~~~vKr~~~~~------------------- 79 (116)
T 1umu_A 27 TYFVKASGDSMIDGGIS-DGDLLIVDSA----ITASHGDIVIAAVD---GEFTVKKLQLRP------------------- 79 (116)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEETT----SCCCTTCEEEEEET---TEEEEEEEECSS-------------------
T ss_pred EEEEEECCCCcCCCCCC-CCCEEEEEcC----CCCCCCCEEEEEEC---CEEEEEEEEeCC-------------------
Confidence 4568899999999 898 9999999873 36899999999873 478999998632
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCC
Q 031448 112 VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPN 153 (159)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~~ 153 (159)
.+++.+||+... ......-..-.|+|+|.+.+..+.
T Consensus 80 ----~~~L~s~N~~y~--~~~i~~~~~~~IiG~Vv~~~r~~r 115 (116)
T 1umu_A 80 ----TVQLIPMNSAYS--PITISSEDTLDVFGVVIHVVKAAT 115 (116)
T ss_dssp ----SCEEECSSTTSC--CEECCTTSCEEEEEEEEEEEC---
T ss_pred ----cEEEECCCCCCC--CEEcCCCCeEEEEEEEEEEEEecC
Confidence 577888986322 111111123479999999877654
No 4
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=99.05 E-value=2.1e-09 Score=74.33 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=62.5
Q ss_pred EeEEEeCCCCc------cccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCc
Q 031448 34 SPTLVFGPSML------PTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSC 107 (159)
Q Consensus 34 ~~~~v~~~SM~------Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~ 107 (159)
....|.|+||+ |++. +||++++++. .+++.||+|++..+. ++..+||+...+
T Consensus 45 f~~~V~GdSM~~~~g~~p~i~-~Gd~v~vd~~----~~~~~Gdivv~~~~~--~~~~vKrl~~~~--------------- 102 (133)
T 2hnf_A 45 FWLEVEGNSMTTPTGSKTSFP-DGMLILVDPE----QAVEPGDFCIARLGG--DEFTFAKLIRDS--------------- 102 (133)
T ss_dssp EEEECCSSTTCCC---CCCCC-TTCEEEEETT----SCCCTTSEEEEEETT--TEEEEEEEEEET---------------
T ss_pred EEEEEeCCCcCCCcCCCCccC-CCCEEEEccC----CCCCCCCEEEEEECC--CEEEEEEEEEeC---------------
Confidence 46789999999 9998 9999999873 478999999998742 578999998643
Q ss_pred ceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEE
Q 031448 108 HTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFR 148 (159)
Q Consensus 108 ~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~ 148 (159)
|.+++.+||+... + .... ..-.|+|+|++.
T Consensus 103 -------~~~~L~s~N~~y~-~-~~~~--~~~~IiG~Vv~~ 132 (133)
T 2hnf_A 103 -------GQVFLQPLNPQYP-M-IPCN--ESCSVVGKVIAS 132 (133)
T ss_dssp -------TEEEEECSSTTSC-C-EECS--TTEEEEEEEEEE
T ss_pred -------CeEEEEECCCCCC-C-EEcC--CCCEEEEEEEEE
Confidence 3688889987322 2 1111 455799999873
No 5
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=99.01 E-value=3.7e-09 Score=77.74 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=63.1
Q ss_pred EeEEEeCCCCccc-cCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEEe
Q 031448 34 SPTLVFGPSMLPT-LNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVV 112 (159)
Q Consensus 34 ~~~~v~~~SM~Pt-l~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~v 112 (159)
....|.|+||+|+ +. +||++++++. .+++.||+|++.. +++..+||+. .+|+
T Consensus 111 ~~~~v~GdSM~p~~i~-~Gd~v~vd~~----~~~~~G~i~v~~~---~~~~~vKrl~-~~~~------------------ 163 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIM-DGDLLAVHKT----QDVRNGQVVVARI---DDEVTVKRLK-KQGN------------------ 163 (202)
T ss_dssp EEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTSEEEEEE---TTEEEEEEEE-EETT------------------
T ss_pred EEEEECCCCCCCCCCC-CCCEEEEecc----CCcCCCeEEEEEE---CCEEEEEEEE-EeCC------------------
Confidence 4678999999999 98 9999999873 3689999999986 3578999998 4544
Q ss_pred cCCeEEEEcCCCCCCCCCCccc-cccCCCeEEEEEEEEeCCC
Q 031448 113 PKGHVWIQGDNLYASRDSRQFG-PVPYGLIEGKAFFRVWPPN 153 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G-~V~~~~I~G~v~~~~~p~~ 153 (159)
.+++.+||+... ...+. .-..-.|+|+|++.+..++
T Consensus 164 ---~~~l~s~N~~y~--~~~~~~~~~~~~IiG~Vv~~~r~~~ 200 (202)
T 1jhf_A 164 ---KVELLPENSEFK--PIVVDLRQQSFTIEGLAVGVIRNGD 200 (202)
T ss_dssp ---EEEEECSSTTCC--CEEEETTTSCEEEEEEEEEEEEC--
T ss_pred ---EEEEEECCCCCC--CEEccCCCCceEEEEEEEEEEEccc
Confidence 677788886321 11111 0122359999998876543
No 6
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=98.98 E-value=1.9e-09 Score=80.80 Aligned_cols=90 Identities=26% Similarity=0.355 Sum_probs=68.6
Q ss_pred EeEEEeCCCCc------cccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCc
Q 031448 34 SPTLVFGPSML------PTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSC 107 (159)
Q Consensus 34 ~~~~v~~~SM~------Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~ 107 (159)
....|.|+||+ |++. +||++++++- .+++.||+|++.. +.++..+||+...+|
T Consensus 141 ~~l~V~GdSM~~~~g~~P~i~-~Gd~v~vd~~----~~~~~g~ivv~~~--~~~~~~vKrl~~~~~-------------- 199 (236)
T 3bdn_A 141 FWLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARL--GGDEFTFKKLIRGSG-------------- 199 (236)
T ss_dssp EEEECCSSSSCCCSSCSSCCC-SSCEEEECCS----SCCCTTSEEEEES--TTTCCCCEEEECCSS--------------
T ss_pred EEEEEeCCCcCCCCCCCCcCC-CCCEEEECCC----CCCCCCcEEEEEE--CCCeEEEEEEEEcCC--------------
Confidence 35789999999 9998 9999999873 3789999999986 235789999986443
Q ss_pred ceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCCc
Q 031448 108 HTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFG 156 (159)
Q Consensus 108 ~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~~~~~ 156 (159)
.+++.+||+.. .+ ...- ..-.|+|+|++..||.+.|+
T Consensus 200 --------~~~L~s~N~~y-~~-~~~~--~~~~IiG~Vv~~~~~~~~~~ 236 (236)
T 3bdn_A 200 --------QVFLQPLNPQY-PM-IPCN--ESCSVVGKVIASQWPEETFG 236 (236)
T ss_dssp --------SCEEECSSTTS-CC-BC----CCCEEEEEEEECCCCSSSCC
T ss_pred --------cEEEEeCCCCC-CC-eecC--CCcEEEEEEEEEEcCHHhcC
Confidence 57788888632 12 1111 44679999999999988775
No 7
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=98.72 E-value=2.5e-07 Score=67.75 Aligned_cols=85 Identities=22% Similarity=0.115 Sum_probs=63.6
Q ss_pred EEeEEEeCCCC-ccccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEE
Q 031448 33 WSPTLVFGPSM-LPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVV 111 (159)
Q Consensus 33 ~~~~~v~~~SM-~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~ 111 (159)
.....|.|+|| +|++. +||++++++- ..++.||+|++... ++..+||+.-.+
T Consensus 109 ~f~l~v~GdSM~~p~i~-~GD~viv~~~----~~~~~G~ivv~~~~---~~~~vKr~~~~~------------------- 161 (196)
T 3k2z_A 109 HFLLKVKGESMIEEHIC-DGDLVLVRRQ----DWAQNGDIVAAMVD---GEVTLAKFYQRG------------------- 161 (196)
T ss_dssp EEEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTCEEEEEET---TEEEEEEEEEET-------------------
T ss_pred EEEEEEeCCCcCCCCCC-CCCEEEEecc----CcCCCCCEEEEEEC---CcEEEEEEEEEC-------------------
Confidence 45679999999 69998 9999999973 47899999999863 489999997643
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEe
Q 031448 112 VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVW 150 (159)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~ 150 (159)
|.+++..+|+... .... +-..-.|+|+|++.+.
T Consensus 162 ---~~~~L~~~N~~y~--~i~i-~~~~~~i~G~Vv~~~r 194 (196)
T 3k2z_A 162 ---DTVELRPANREMS--SMFF-RAEKVKILGKVVGVFR 194 (196)
T ss_dssp ---TEEEEECSCTTSC--CEEE-EGGGCEEEEEEEEEEE
T ss_pred ---CEEEEEECCCCCC--CEEe-cCCCEEEEEEEEEEEE
Confidence 4788888886332 1111 1134589999998664
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=97.30 E-value=0.0019 Score=46.25 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=51.1
Q ss_pred CCCccccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEEecCCeEEEE
Q 031448 41 PSMLPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVVPKGHVWIQ 120 (159)
Q Consensus 41 ~SM~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~vp~~~~~v~ 120 (159)
++|...-. +||++++++- .+..|+++++.. +++..+||+.-.+|+ .+.+.
T Consensus 113 ~~~~~v~~-~Gd~v~Vd~~-----~~~~g~i~vv~~---~g~~~vKrl~~~~~~---------------------~i~L~ 162 (189)
T 2fjr_A 113 TDGMAIRS-EGKIYFVDKQ-----ASLSDGLWLVDI---KGAISIRELTKLPGR---------------------KLHVA 162 (189)
T ss_dssp SSEEEEEE-TTEEEEEETT-----CCSCSEEEEEEE---TTEEEEEEEEEETTT---------------------EEEEE
T ss_pred CCeEEEee-CCcEEEEEcC-----CccCCCEEEEEe---CCeEEEEEEEECCCC---------------------EEEEE
Confidence 34544344 8999999872 477899999986 347899999876654 56667
Q ss_pred cCCCCCCCCCCccccccCCCeEEEEEEEEeCC
Q 031448 121 GDNLYASRDSRQFGPVPYGLIEGKAFFRVWPP 152 (159)
Q Consensus 121 gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~ 152 (159)
+||++ ...- ...=.|+|+|++.+-.+
T Consensus 163 s~N~~-----~~i~-~~~i~IiG~Vv~~~r~~ 188 (189)
T 2fjr_A 163 GGKVP-----FECG-IDDIKTLGRVVGVYSEV 188 (189)
T ss_dssp SSSSC-----EEEE-TTSSEEEEEEEEEEEEC
T ss_pred eCCCC-----eEec-ccceEEEEEEEEEEEec
Confidence 77751 1111 13346999999876443
No 9
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=76.87 E-value=14 Score=24.58 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCCCCCCCccccccCC
Q 031448 113 PKGHVWIQGDNLYASRDSRQFGPVPYG 139 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (159)
.+|..-++.++. +..-+|-||||+++
T Consensus 80 ddNa~Vlin~~~-~p~GTrI~GpVarE 105 (122)
T 3v2d_O 80 DDNAAVIINNQL-EPRGTRVFGPVARE 105 (122)
T ss_dssp SSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CCcEEEEECCCC-CEeeeEEEccchHH
Confidence 445666666654 77889999999875
No 10
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=74.67 E-value=16 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCCCCCCCCccccccCCC
Q 031448 113 PKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (159)
.+|..-++.++..+..-+|-||||+++.
T Consensus 80 ddNa~Vlin~~~g~p~GTrI~GpVarEl 107 (122)
T 3r8s_K 80 DGNACVLLNNNSEQPIGTRIFGPVTREL 107 (122)
T ss_dssp SSCEEEEEETTTEEESCSCBCSCCCGGG
T ss_pred CCceEEEEeCCCCCEeeeEEEccccHHH
Confidence 4556667766633677899999999863
No 11
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=71.59 E-value=4.7 Score=28.24 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=42.0
Q ss_pred ccccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCC---EEEEeC-----CCCCCCcceEEecCC
Q 031448 44 LPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGD---RVTYFK-----PRNGDSCHTVVVPKG 115 (159)
Q Consensus 44 ~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd---~v~i~~-----~~~~~~~~~~~vp~~ 115 (159)
+|-.. .++..+..........++.||.|.+..++++...+|.||..+--+ ...+.- +........-..-++
T Consensus 6 ~~~~~-~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~~~~~~~~~ 84 (174)
T 1w4s_A 6 SAGLS-SLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHLATRKFLEK 84 (174)
T ss_dssp ---------------------CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCCTTCEEETT
T ss_pred Ccccc-CCCcEEeEEEEECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccccCCcCCCC
Confidence 35554 555555554444456899999999987665567888888875321 111110 110000000011256
Q ss_pred eEEEEcCCCCCCCCCCccccccCCCeEEEEEEE
Q 031448 116 HVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFR 148 (159)
Q Consensus 116 ~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~ 148 (159)
++|.. .++--++.+.|.||....
T Consensus 85 EvF~S----------~~~d~~~~~~I~gkC~V~ 107 (174)
T 1w4s_A 85 EVFKS----------DYYNKVPVSKILGKCVVM 107 (174)
T ss_dssp EEEEE----------EEEEEEEGGGEEEEEEEE
T ss_pred eeEEe----------CCcceecHHHeeeeEEEE
Confidence 66653 233458888999998653
No 12
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=70.30 E-value=21 Score=23.67 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCCCCCCCccccccCCC
Q 031448 113 PKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (159)
.+|..-++.++. +..-+|-||||+++.
T Consensus 80 ddNa~Vlin~~g-~p~GTrI~GPVarEl 106 (121)
T 3bbo_M 80 DDNAAVIIDQEG-NPKGTRIFGAIAREL 106 (121)
T ss_dssp SSCEEEECCTTS-SCSSSCCCSCCCGGG
T ss_pred CCceEEEECCCC-CEeEeEEEcCcCHHH
Confidence 445565665553 678899999999863
No 13
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=67.04 E-value=25 Score=23.32 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCCCCCCCCccccccCC
Q 031448 113 PKGHVWIQGDNLYASRDSRQFGPVPYG 139 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (159)
.+|..-++.++. +..-+|-||||+++
T Consensus 80 ddNa~Vlin~~g-~p~GTrI~GPVarE 105 (122)
T 1whi_A 80 DENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp SSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred CCceEEEECCCC-CEeeeEEEccchHH
Confidence 455666666664 67889999999875
No 14
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=45.41 E-value=74 Score=22.10 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=38.6
Q ss_pred CCCCCeEEEEecCCCCCceEEEEEEEe-C-----CCEEEEe-------CCCCC--CCcceEEecCCeEEEEcCCCCCCCC
Q 031448 65 RLGPGDIVFVRSPVDPNKIVTKRIVGV-E-----GDRVTYF-------KPRNG--DSCHTVVVPKGHVWIQGDNLYASRD 129 (159)
Q Consensus 65 ~~~~GDiVvf~~p~~~~~~~vkRVi~~-p-----Gd~v~i~-------~~~~~--~~~~~~~vp~~~~~v~gdn~~~s~D 129 (159)
.++.||.|+.+.. +..+.+|.|+..+ + .+..... .+-+. .......+.+.++|.- ||+ . .|
T Consensus 38 ~i~vGd~VLI~~~-D~~~PyVAki~~lye~~~e~~~~k~A~VQWy~R~~EiP~~k~~l~g~~~~~qEIF~~-d~~-~-~d 113 (163)
T 4dov_A 38 HIKVGQFVLIQGE-DNKKPYVAKLIELFQNGAEVPPKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWY-DCS-D-WD 113 (163)
T ss_dssp EEETTCEEEECCS-SSSCCEEEEEEEEEEETTSSSCEEEEEEEEEEEGGGSCTTTGGGGCSCCCTTEEEEE-CCS-C-SC
T ss_pred EEeeCCEEEEeCC-cccCChhHHHHHHHhccccCCCceEEEEEeeechhhccccchhhccCCCCCCeEEEe-cCC-C-Cc
Confidence 4566666666543 3355677787776 1 1211110 01111 1112222344566553 443 1 12
Q ss_pred CCccccccCCCeEEEEEEEEe
Q 031448 130 SRQFGPVPYGLIEGKAFFRVW 150 (159)
Q Consensus 130 SR~~G~V~~~~I~G~v~~~~~ 150 (159)
+ -|+.+.|+|++...-.
T Consensus 114 ~----~I~aeTIi~~c~V~~~ 130 (163)
T 4dov_A 114 N----KINVETIIGPVQVVAL 130 (163)
T ss_dssp C----EEEGGGEEEEEEEEEC
T ss_pred c----cccHHHeeeceEEEEc
Confidence 2 4899999999876544
No 15
>3a2z_A Bifunctional glutathionylspermidine synthetase/AM; GSP amidase, ATP-binding, hydrolase, ligase, multifunctional nucleotide-binding; 1.50A {Escherichia coli} PDB: 3a30_A 3a2y_A*
Probab=44.06 E-value=85 Score=22.42 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=27.2
Q ss_pred CCCCCCeEEEEecC-CCCCceEEEEEEEeCCCEEEEeCCC
Q 031448 64 GRLGPGDIVFVRSP-VDPNKIVTKRIVGVEGDRVTYFKPR 102 (159)
Q Consensus 64 ~~~~~GDiVvf~~p-~~~~~~~vkRVi~~pGd~v~i~~~~ 102 (159)
..|+.||+++|... ....-=.|--|..+.+++|.+.++.
T Consensus 110 ~~P~~Gdl~V~~~g~~~~~yGHVAvV~~V~~~~i~i~EQN 149 (197)
T 3a2z_A 110 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQN 149 (197)
T ss_dssp SCCCTTCEEEECSCGGGTTTCEEEEEEEECSSEEEEECSS
T ss_pred CCCCCCeEEEECCCCcCCCCccEEEEEEEcCCeEEEEecc
Confidence 68999999999652 1111226667778888899998643
No 16
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=39.69 E-value=1.1e+02 Score=26.05 Aligned_cols=39 Identities=13% Similarity=-0.014 Sum_probs=29.1
Q ss_pred CCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCC
Q 031448 64 GRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPR 102 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~ 102 (159)
..|+.||+++|........=.|--|+.+.+++|.+-++.
T Consensus 110 ~~P~~GdllV~~~~~~~p~GHVAVV~~V~~~~v~i~EQN 148 (652)
T 2vob_A 110 TKPEADALLVYPSTDANPVGHVGTITEVGDDYVCVADQN 148 (652)
T ss_dssp SCCCSSEEEEECCCSSCTTCEEEEEEEECSSEEEEECSS
T ss_pred CCCCCceEEEEcCCCCCCCCcEEEEEEecCCEEEEEEec
Confidence 589999999998733222236777888889999998654
No 17
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=35.37 E-value=74 Score=19.95 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=8.6
Q ss_pred CCCcEEEEEecc
Q 031448 49 LTGDVILAEYVS 60 (159)
Q Consensus 49 ~~Gd~vlv~~~~ 60 (159)
|-+|+|++.+..
T Consensus 5 PL~DRVlVk~~e 16 (95)
T 3nx6_A 5 PLHDRVVVKPIE 16 (95)
T ss_dssp CCTTEEEEEEC-
T ss_pred EcCCEEEEEEcc
Confidence 468999998754
No 18
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.54 E-value=39 Score=21.87 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=21.5
Q ss_pred EEEeCCCCccccCCCCcEEEEEecc--cCCCCCCCCeEEEEec
Q 031448 36 TLVFGPSMLPTLNLTGDVILAEYVS--HRVGRLGPGDIVFVRS 76 (159)
Q Consensus 36 ~~v~~~SM~Ptl~~~Gd~vlv~~~~--~~~~~~~~GDiVvf~~ 76 (159)
....|+.|.-...++|..++..--. +..--+++||+|+...
T Consensus 22 ~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 22 LRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp EECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred EEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 3444555543322267766653211 1112478899888875
No 19
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=32.90 E-value=94 Score=19.80 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=24.4
Q ss_pred CCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCC
Q 031448 50 TGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEG 93 (159)
Q Consensus 50 ~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pG 93 (159)
+|+..-+.-++ ..-.|++||.|++. +..++++|-.-..|
T Consensus 49 sG~~rsLvvFS-sgYrP~r~D~Vv~~----Gk~y~Vtr~~~~ng 87 (102)
T 2pp6_A 49 EGNGKNVVVFS-GNVIPRRGDRVVLR----GSEFTVTRIRRFNG 87 (102)
T ss_dssp ---CEEEEECC-SSCCCCTTCEEEET----TEEEEEEEEEEETT
T ss_pred cCCceEEEEec-CCcccCCCCEEEEc----CcEEEEEEEEEECC
Confidence 35544443333 23479999999996 46788888766554
No 20
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=32.41 E-value=1.3e+02 Score=21.16 Aligned_cols=57 Identities=12% Similarity=0.067 Sum_probs=39.7
Q ss_pred CCCCCCeEEEEecCC--CCCceEEEEEEEeCC--CEEEEeCCCCCCCcceEEecCCeEEEEc
Q 031448 64 GRLGPGDIVFVRSPV--DPNKIVTKRIVGVEG--DRVTYFKPRNGDSCHTVVVPKGHVWIQG 121 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~--~~~~~~vkRVi~~pG--d~v~i~~~~~~~~~~~~~vp~~~~~v~g 121 (159)
..++.||-|++.... +.++.++-+|+...+ .+.++.|..... ...++++..++.-+=
T Consensus 43 ~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~~~~rYeV~D~d~eg-~~~~~~s~~~IIPLP 103 (180)
T 3mea_A 43 YVARPGDKVAARVKAVDGDEQWILAEVVSYSHATNKYEVDDIDEEG-KERHTLSRRRVIPLP 103 (180)
T ss_dssp CCCCTTCEEEEEEECCC--EEEEEEEEEEEETTTTEEEEEECCTTC-CEEEEEEGGGEEECC
T ss_pred cccCCCCEEEEEcCCCCCCccEEEEEEEEEcCCCCEEEEecCCCCC-ceeEEeCHHHEEECC
Confidence 478999999999742 235788999998765 567777654432 246777777777774
No 21
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.87 E-value=43 Score=22.23 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=25.2
Q ss_pred CCeEEEEcCCC----CCCCCCCccccccCCCeEEEEEE
Q 031448 114 KGHVWIQGDNL----YASRDSRQFGPVPYGLIEGKAFF 147 (159)
Q Consensus 114 ~~~~~v~gdn~----~~s~DSR~~G~V~~~~I~G~v~~ 147 (159)
+-|||.|..+. .+..++|+|=.|+.++|....-.
T Consensus 25 KRHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~ 62 (125)
T 2coa_A 25 KRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESA 62 (125)
T ss_dssp EEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEES
T ss_pred cceeeEecCCeEEEEecCCCCceeeeeehhHeeccccc
Confidence 34888888775 24567889988999988876554
No 22
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=26.29 E-value=26 Score=22.41 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=8.9
Q ss_pred CCCCCeEEEEec
Q 031448 65 RLGPGDIVFVRS 76 (159)
Q Consensus 65 ~~~~GDiVvf~~ 76 (159)
-+++||+|....
T Consensus 58 wI~~GD~VlVe~ 69 (102)
T 1jt8_A 58 WVREGDVVIVKP 69 (102)
T ss_dssp CCCSCEEEEECC
T ss_pred EecCCCEEEEEe
Confidence 477888888864
No 23
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=26.28 E-value=1.2e+02 Score=18.95 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=8.9
Q ss_pred CCCcEEEEEecc
Q 031448 49 LTGDVILAEYVS 60 (159)
Q Consensus 49 ~~Gd~vlv~~~~ 60 (159)
|-+|+|++.+..
T Consensus 5 PL~DRVlVk~~e 16 (97)
T 1pcq_O 5 PLHDRVIVKRKE 16 (97)
T ss_dssp ECSSEEEEEECC
T ss_pred EcCCEEEEEEcc
Confidence 458899988754
No 24
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=25.84 E-value=96 Score=20.27 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.7
Q ss_pred CCCCCCeEEEEecCCC
Q 031448 64 GRLGPGDIVFVRSPVD 79 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~~ 79 (159)
..++.||+++|...++
T Consensus 90 ~~L~~GD~~~F~~~~~ 105 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNG 105 (130)
T ss_dssp TTCCTTCEEEEEECCS
T ss_pred cCCCCCCEEEEEEecC
Confidence 5789999999987543
No 25
>3pqh_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 1.29A {Bacteriophage PHI92}
Probab=24.12 E-value=72 Score=21.21 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=29.2
Q ss_pred CcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEE---EE-EeCCCEEEEeC
Q 031448 51 GDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKR---IV-GVEGDRVTYFK 100 (159)
Q Consensus 51 Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkR---Vi-~~pGd~v~i~~ 100 (159)
|=.+-++.-.++...+ .||+.+|.. ......+|| |+ ...++++.+.+
T Consensus 21 gVvIa~~d~ryR~~gL-~GEvaiY~~--~G~~I~Lk~~giIiid~~~~~v~v~a 71 (127)
T 3pqh_A 21 KVIISNNKQTYASFDP-NGNISVYNT--QGMKIDMTPNSIVLTDAGGGKLTLQG 71 (127)
T ss_dssp CEEEEETTTEEEEECT-TSCEEEEET--TSCEEEEETTEEEEEETTTEEEEEET
T ss_pred cEEEEeCCcccccCCC-CCcEEEEcC--CCCEEEEecCCEEEEecCCCeEEEec
Confidence 4344444434445567 999999986 344556655 43 56677887764
No 26
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=23.89 E-value=28 Score=21.13 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=9.6
Q ss_pred CCCCCeEEEEec
Q 031448 65 RLGPGDIVFVRS 76 (159)
Q Consensus 65 ~~~~GDiVvf~~ 76 (159)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 578888888875
No 27
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=23.36 E-value=96 Score=19.62 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=10.6
Q ss_pred cCCCCcEEEEEecc
Q 031448 47 LNLTGDVILAEYVS 60 (159)
Q Consensus 47 l~~~Gd~vlv~~~~ 60 (159)
+.|-+|+|++.+..
T Consensus 8 i~PL~DRVlVk~~e 21 (100)
T 1we3_O 8 IKPLGDRVVVKRIE 21 (100)
T ss_dssp EEECTTCEEEEECC
T ss_pred eEEeCCEEEEEEcc
Confidence 44578999998754
No 28
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=23.31 E-value=1.1e+02 Score=19.65 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=16.1
Q ss_pred CCCCCCCeEEEEecCCCCCceEEEEEEE
Q 031448 63 VGRLGPGDIVFVRSPVDPNKIVTKRIVG 90 (159)
Q Consensus 63 ~~~~~~GDiVvf~~p~~~~~~~vkRVi~ 90 (159)
.+.++.||.++|. +..+.-+|..
T Consensus 31 ~~~ikvGD~I~f~-----~~~l~~~V~~ 53 (109)
T 2z0t_A 31 RRQIKPGDIIIFE-----GGKLKVKVKG 53 (109)
T ss_dssp GGGCCTTCEEEEG-----GGTEEEEEEE
T ss_pred hhcCCCCCEEEEC-----CCEEEEEEEE
Confidence 4578999999992 2345566665
No 29
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.05 E-value=75 Score=21.18 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCeEEEEcCCC----CCCCCCCccccccCCCeEEEE
Q 031448 114 KGHVWIQGDNL----YASRDSRQFGPVPYGLIEGKA 145 (159)
Q Consensus 114 ~~~~~v~gdn~----~~s~DSR~~G~V~~~~I~G~v 145 (159)
+-|||.|..+. .+..++|+|=.|+.+.|....
T Consensus 25 KRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~ 60 (129)
T 2d9z_A 25 KRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRIS 60 (129)
T ss_dssp EEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEEC
T ss_pred cceeeEecCCeEEEEecCCCCceeceeeHHHhcccc
Confidence 34788887765 234578888888888876543
No 30
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=21.77 E-value=86 Score=24.21 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=6.4
Q ss_pred CCCCCeEEEEec
Q 031448 65 RLGPGDIVFVRS 76 (159)
Q Consensus 65 ~~~~GDiVvf~~ 76 (159)
+++.||+++|..
T Consensus 309 ~l~~GD~l~~~~ 320 (365)
T 3mt1_A 309 ELKVGDRISFQD 320 (365)
T ss_dssp CCCTTCEEEESS
T ss_pred CCCCCCEEEEec
Confidence 455555555543
No 31
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=20.94 E-value=99 Score=17.92 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=17.1
Q ss_pred eCCCEEEEeCCCCCCCcceE---EecCCeEEE
Q 031448 91 VEGDRVTYFKPRNGDSCHTV---VVPKGHVWI 119 (159)
Q Consensus 91 ~pGd~v~i~~~~~~~~~~~~---~vp~~~~~v 119 (159)
+||-+|.++|+.+....++. .+.+|..=|
T Consensus 3 lPG~~V~V~np~~~Yy~y~G~VQRvsdgkaaV 34 (66)
T 2jz2_A 3 FPGATVRVTNVDDTYYRFEGLVQRVSDGKAAV 34 (66)
T ss_dssp CTTCEEEECCTTSTTBTCEEEEEEEETTEEEE
T ss_pred cCCCEEEEeCCCCcccceeEEEEEecCCcEEE
Confidence 68888888877655444333 334455333
No 32
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=20.36 E-value=2.2e+02 Score=19.58 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=27.2
Q ss_pred CCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeC
Q 031448 65 RLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFK 100 (159)
Q Consensus 65 ~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~ 100 (159)
+++.|+.+.+..+. +..+.-+|..+.+|+|.+.-
T Consensus 112 ~~~~G~~~~~~~~~--G~~~~~~V~~v~~~~V~vD~ 145 (169)
T 4dt4_A 112 EPEIGAIMLFTAMD--GSEMPGVIREINGDSITVDF 145 (169)
T ss_dssp CCCTTCEEEEECTT--SCEEEEEEEEEETTEEEEEC
T ss_pred CCCCCcEEEEECCC--CCEEEEEEEEEcCCEEEEeC
Confidence 58889999998753 45667789999999999873
No 33
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=20.08 E-value=1e+02 Score=19.93 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=15.9
Q ss_pred CCCCCCCCeEEEEecCCCCCceEEEEEEE
Q 031448 62 RVGRLGPGDIVFVRSPVDPNKIVTKRIVG 90 (159)
Q Consensus 62 ~~~~~~~GDiVvf~~p~~~~~~~vkRVi~ 90 (159)
..+.++.||.++|+. .+.-+|..
T Consensus 31 ~~~~i~vGD~I~f~~------~l~~~V~~ 53 (113)
T 1xne_A 31 QLKDIKRGDKIIFND------LIPAEVVE 53 (113)
T ss_dssp TTTTCCTTCEEEETT------TEEEEEEE
T ss_pred hhhccCCCCEEEEcc------ceEEEEEE
Confidence 346789999999964 34455554
Done!