Query 031448
Match_columns 159
No_of_seqs 192 out of 1152
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 23:00:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031448.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031448hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b12a_ b.87.1.2 (A:) Type 1 s 100.0 7.9E-39 5.7E-43 243.0 12.6 124 29-153 1-228 (247)
2 d1f39a_ b.87.1.1 (A:) lambda r 99.2 7.2E-11 5.2E-15 76.6 11.3 89 35-156 7-101 (101)
3 d1jhfa2 b.87.1.1 (A:73-198) Le 99.0 4.8E-09 3.5E-13 70.3 10.9 84 34-149 39-124 (126)
4 d1umua_ b.87.1.1 (A:) UmuD' {E 98.7 7.6E-08 5.5E-12 62.4 9.8 83 34-149 21-104 (105)
5 d2io8a2 d.3.1.15 (A:10-200) Gl 75.1 9.5 0.00069 25.6 8.5 59 64-122 101-170 (191)
6 d2gyci1 b.39.1.1 (I:2-122) Rib 72.0 8.7 0.00064 23.9 6.9 29 112-140 78-106 (121)
7 d1zvpa1 d.58.18.9 (A:2-67) Hyp 71.3 0.92 6.7E-05 25.5 1.7 17 41-58 11-27 (66)
8 d1whia_ b.39.1.1 (A:) Ribosoma 66.2 12 0.00088 23.2 7.3 27 112-139 79-105 (122)
9 d1we3o_ b.35.1.1 (O:) Chaperon 64.7 11 0.00078 22.1 6.1 23 49-73 6-28 (96)
10 d2j01o1 b.39.1.1 (O:1-122) Rib 52.3 22 0.0016 21.9 8.8 28 111-139 78-105 (122)
11 d1p3ha_ b.35.1.1 (A:) Chaperon 47.6 23 0.0017 20.7 5.6 89 49-145 7-97 (99)
12 d1hr0w_ b.40.4.5 (W:) Translat 45.7 7.7 0.00056 21.7 2.6 10 66-75 47-56 (71)
13 d1aono_ b.35.1.1 (O:) Chaperon 39.2 32 0.0023 19.8 5.3 88 49-145 5-95 (97)
14 d1wida_ b.142.1.2 (A:) DNA-bin 33.5 30 0.0022 20.5 4.3 15 64-78 83-97 (117)
15 d1kqfb2 f.23.22.1 (B:246-290) 32.8 21 0.0015 18.0 2.8 26 7-32 7-32 (45)
16 d1ah9a_ b.40.4.5 (A:) Translat 29.6 8.1 0.00059 21.6 0.8 12 65-76 45-56 (71)
17 d1twia1 b.49.2.3 (A:15-49,A:31 29.1 27 0.002 22.6 3.7 24 50-76 96-119 (170)
18 d2pp6a1 b.106.1.2 (A:1-93) Gif 28.6 30 0.0022 20.2 3.3 26 64-93 59-84 (93)
19 d1hkva1 b.49.2.3 (A:2-45,A:311 27.5 29 0.0021 22.8 3.6 9 92-100 127-135 (181)
20 d1uwva1 b.40.4.12 (A:15-74) rR 25.7 14 0.001 19.6 1.4 11 89-99 29-39 (60)
21 d1m4za_ b.34.12.1 (A:) Origin- 24.5 53 0.0039 22.1 4.6 34 64-98 51-88 (217)
22 d1f3ta1 b.49.2.3 (A:14-43,A:28 23.3 35 0.0026 21.9 3.4 8 93-100 125-132 (169)
23 d7odca1 b.49.2.3 (A:2-43,A:284 23.3 35 0.0026 22.1 3.4 12 65-76 133-144 (177)
24 d2axtj1 f.23.32.1 (J:7-40) Pho 21.5 7.4 0.00054 18.3 -0.4 29 14-42 5-33 (34)
25 d1vqok1 b.39.1.1 (K:1-132) Rib 21.4 34 0.0025 21.3 2.8 30 110-140 88-117 (132)
26 d1dm9a_ d.66.1.3 (A:) Heat sho 20.8 51 0.0037 19.4 3.5 28 64-94 43-70 (104)
No 1
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=7.9e-39 Score=243.01 Aligned_cols=124 Identities=36% Similarity=0.520 Sum_probs=109.2
Q ss_pred hhceEEeEEEeCCCCccccCCCCcEEEEEecccCC------------CCCCCCeEEEEecCCCCCceEEEEEEEeCCCEE
Q 031448 29 NHYLWSPTLVFGPSMLPTLNLTGDVILAEYVSHRV------------GRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRV 96 (159)
Q Consensus 29 ~~~~~~~~~v~~~SM~Ptl~~~Gd~vlv~~~~~~~------------~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v 96 (159)
+.|+++++.|+|+||+|||. .||+++++|+++.. ..+++||+|+|..|.++...++|||+|+|||++
T Consensus 1 R~f~~~~f~IPs~SMePTL~-~GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR~ig~pGD~i 79 (247)
T d1b12a_ 1 RSFIYEPFQIPSGSMMPTLL-IGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKV 79 (247)
T ss_dssp CBCCEEEEECCSCTTTTTSC-TTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEE
T ss_pred CEEEEEEEEeCcccccchhc-cCCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCccccccccCCCCCeE
Confidence 46899999999999999999 99999999987643 356999999999999888899999999999999
Q ss_pred EEeCCC--------------------------------------------------------------------------
Q 031448 97 TYFKPR-------------------------------------------------------------------------- 102 (159)
Q Consensus 97 ~i~~~~-------------------------------------------------------------------------- 102 (159)
++.+..
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (247)
T d1b12a_ 80 TYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTH 159 (247)
T ss_dssp EEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEEEEEETTEEE
T ss_pred EEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeeeeeccCCcce
Confidence 886310
Q ss_pred ------------------CCCCcceEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCC
Q 031448 103 ------------------NGDSCHTVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPN 153 (159)
Q Consensus 103 ------------------~~~~~~~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~~ 153 (159)
......+++||+|+|||||||+.+|.|||+||+||+++|+|||.+++||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~ 228 (247)
T d1b12a_ 160 RILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFD 228 (247)
T ss_dssp EEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC
T ss_pred eEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECC
Confidence 012235789999999999999999999999999999999999999999965
No 2
>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=99.24 E-value=7.2e-11 Score=76.59 Aligned_cols=89 Identities=26% Similarity=0.373 Sum_probs=68.5
Q ss_pred eEEEeCCCC------ccccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcc
Q 031448 35 PTLVFGPSM------LPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCH 108 (159)
Q Consensus 35 ~~~v~~~SM------~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~ 108 (159)
..+|.|+|| +|+++ +||++++++- .+++.||+|++... .++..+||+.-.+
T Consensus 7 ~l~V~GdSM~~~~~~ep~i~-~Gd~viVd~~----~~~~~g~ivva~~~--~~~~~vKr~~~~~---------------- 63 (101)
T d1f39a_ 7 WLEVEGNSMTAPTGSKPSFP-DGMLILVDPE----QAVEPGDFCIARLG--GDEFTFKKLIRDS---------------- 63 (101)
T ss_dssp EEECCSSTTCCCTTCSSCCC-TTCEEEEETT----SCCCTTCEEEEECT--TSCEEEEEEEEET----------------
T ss_pred EEEEeCCccCCCcccCCCcC-CCCEEEEEec----CccCCCCEEEEEEC--CCeEEEEEEEEcC----------------
Confidence 468999999 79998 9999999873 58899999988763 4467899997643
Q ss_pred eEEecCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEEeCCCCCc
Q 031448 109 TVVVPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFG 156 (159)
Q Consensus 109 ~~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~~p~~~~~ 156 (159)
+++++.++|+.+. ..... ..-.|+|+|+..+||-+-+|
T Consensus 64 ------~~~~L~s~N~~y~--~i~~~--~~~~IiG~Vv~s~~p~~~~~ 101 (101)
T d1f39a_ 64 ------GQVFLQPLNPQYP--MIPCN--ESCSVVGKVIASQWPEETFG 101 (101)
T ss_dssp ------TEEEEECSSTTSC--CEECS--TTCEEEEEEEEEECCGGGGC
T ss_pred ------CEEEEEECCCCCC--CCcCC--CCcEEEEEEEEEECcHHHCC
Confidence 4788889987432 22221 34689999999999987765
No 3
>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=98.95 E-value=4.8e-09 Score=70.34 Aligned_cols=84 Identities=20% Similarity=0.138 Sum_probs=62.5
Q ss_pred EeEEEeCCCCccc-cCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEEe
Q 031448 34 SPTLVFGPSMLPT-LNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVV 112 (159)
Q Consensus 34 ~~~~v~~~SM~Pt-l~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~v 112 (159)
...+|.|+||+|+ ++ +||++++++- .+++.||+|++.. +++..+||+.-.+
T Consensus 39 f~lrV~GdSM~~~~i~-~gd~viv~~~----~~~~~G~ivv~~~---~ge~~vKrl~~~~-------------------- 90 (126)
T d1jhfa2 39 FLLRVSGMSMKDIGIM-DGDLLAVHKT----QDVRNGQVVVARI---DDEVTVKRLKKQG-------------------- 90 (126)
T ss_dssp EEEECCSSTTGGGTCC-TTCEEEEEEC----SCCCTTSEEEEEE---TTEEEEEEEEEET--------------------
T ss_pred EEEEEcCCcccCcccC-CCEEEEEecc----ccccCCCEEEEEE---CCEEEEEEEEEcC--------------------
Confidence 4679999999997 87 9999999873 5899999999997 3578999998654
Q ss_pred cCCeEEEEcCCCCCCCCCCccc-cccCCCeEEEEEEEE
Q 031448 113 PKGHVWIQGDNLYASRDSRQFG-PVPYGLIEGKAFFRV 149 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G-~V~~~~I~G~v~~~~ 149 (159)
+.+++.++|+.... ..+. .=..=.|+|+|...+
T Consensus 91 --~~~~L~s~N~~y~p--i~~~~~~~~~~IiG~Vv~vi 124 (126)
T d1jhfa2 91 --NKVELLPENSEFKP--IVVDLRQQSFTIEGLAVGVI 124 (126)
T ss_dssp --TEEEEECSSTTCCC--EEEETTTSCEEEEEEEEEEE
T ss_pred --CEEEEecCCcCCCC--eEccCCCCcEEEEEEEEEEE
Confidence 37888899874321 1110 001126999998765
No 4
>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}
Probab=98.71 E-value=7.6e-08 Score=62.37 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=60.3
Q ss_pred EeEEEeCCCC-ccccCCCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEEe
Q 031448 34 SPTLVFGPSM-LPTLNLTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVV 112 (159)
Q Consensus 34 ~~~~v~~~SM-~Ptl~~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~v 112 (159)
...+|.|+|| .|.+. +||++++++- .+++.||+|++.. +++..+||... .
T Consensus 21 f~~rV~GdSM~~~gI~-~GDlliVd~~----~~~~~g~ivva~i---~ge~~vKrl~~-~-------------------- 71 (105)
T d1umua_ 21 YFVKASGDSMIDGGIS-DGDLLIVDSA----ITASHGDIVIAAV---DGEFTVKKLQL-R-------------------- 71 (105)
T ss_dssp EEEECCSSTTGGGTCC-TTCEEEEETT----SCCCTTCEEEEEE---TTEEEEEEEEC-S--------------------
T ss_pred EEEEEcCCccccCccC-CCCEEEEEcc----cccccCcEEEEEE---CCEEEEEEEEE-C--------------------
Confidence 4689999999 58898 9999999983 5899999999997 45789999853 2
Q ss_pred cCCeEEEEcCCCCCCCCCCccccccCCCeEEEEEEEE
Q 031448 113 PKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRV 149 (159)
Q Consensus 113 p~~~~~v~gdn~~~s~DSR~~G~V~~~~I~G~v~~~~ 149 (159)
++.+++.+|+.. +.....+-..-.|.|+|...+
T Consensus 72 --~~~~L~~~N~~y--~~i~i~~~~~~~I~GvVv~vi 104 (105)
T d1umua_ 72 --PTVQLIPMNSAY--SPITISSEDTLDVFGVVIHVV 104 (105)
T ss_dssp --SSCEEECSSTTS--CCEECCTTSCEEEEEEEEEEE
T ss_pred --CcEEEECCCCCC--CCEEcCCCCCEEEEEEEEEEE
Confidence 245677887632 333222222335999998754
No 5
>d2io8a2 d.3.1.15 (A:10-200) Glutathionylspermidine synthase, amidase domain {Escherichia coli [TaxId: 562]}
Probab=75.12 E-value=9.5 Score=25.65 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=37.7
Q ss_pred CCCCCCeEEEEecCC-CCCceEEEEEEEeCCCEEEEeCCC------CCCCc----ceEEecCCeEEEEcC
Q 031448 64 GRLGPGDIVFVRSPV-DPNKIVTKRIVGVEGDRVTYFKPR------NGDSC----HTVVVPKGHVWIQGD 122 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~-~~~~~~vkRVi~~pGd~v~i~~~~------~~~~~----~~~~vp~~~~~v~gd 122 (159)
..|+.||+++|.... ....=.|-.|..+.+++|.+-++. +.... .+....+|.|++.-+
T Consensus 101 ~~P~~Gdllv~~~~~~~~~~GHVavV~~v~~~~v~i~EQN~~~~~w~~g~~ysR~l~l~~~~g~y~i~~~ 170 (191)
T d2io8a2 101 RAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQWTRELEMVVENGCYTLKDT 170 (191)
T ss_dssp SCCCTTCEEEECSBTTBTTTCEEEEEEEECSSEEEEECSSSCCSCCCTTCCCSEEEEEEEETTEEEEECS
T ss_pred CCCCCCcEEEECCCCCCCCceeEEEEEEeCCCEEEEEeccccCCCCCCCCCeeEEEEEEEECCEEEEEec
Confidence 569999999997422 112237788899999999997543 11121 234455677777643
No 6
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli [TaxId: 562]}
Probab=72.00 E-value=8.7 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=21.0
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCCC
Q 031448 112 VPKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (159)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (159)
..+|.+-++.++..+-.-+|-+|||+++-
T Consensus 78 F~~Na~VLi~~~~~~p~GTrI~Gpv~~el 106 (121)
T d2gyci1 78 FDGNACVLLNNNSEQPIGTRIFGPVTREL 106 (121)
T ss_dssp CSSCEEEEECSSSSCBSSSCCCSCBCSTT
T ss_pred eCCCEEEEEcCCCCCcccCeEEccchHHH
Confidence 35566777766643456899999999874
No 7
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=71.29 E-value=0.92 Score=25.46 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.7
Q ss_pred CCCccccCCCCcEEEEEe
Q 031448 41 PSMLPTLNLTGDVILAEY 58 (159)
Q Consensus 41 ~SM~Ptl~~~Gd~vlv~~ 58 (159)
.+|.|.+. +|++||..-
T Consensus 11 ~~m~P~L~-~g~yVF~t~ 27 (66)
T d1zvpa1 11 QSMSPELM-AGDYVFCTV 27 (66)
T ss_dssp HTCEEEEC-SSCEEEEEE
T ss_pred HHCCceEC-CCcEEEEEE
Confidence 38999999 899999864
No 8
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=66.17 E-value=12 Score=23.20 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred ecCCeEEEEcCCCCCCCCCCccccccCC
Q 031448 112 VPKGHVWIQGDNLYASRDSRQFGPVPYG 139 (159)
Q Consensus 112 vp~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (159)
..+|.+-++.++. +-.-+|-+|||+++
T Consensus 79 F~~Na~VLl~~~~-~P~GTrI~Gpv~~e 105 (122)
T d1whia_ 79 FDENACVIIRDDK-SPRGTRIFGPVARE 105 (122)
T ss_dssp CSSCEEEEECTTS-CBSSSCBCSCBCTH
T ss_pred eCCCEEEEECCCC-CEeeeeEeccchHH
Confidence 4566777776654 78889999999975
No 9
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Probab=64.65 E-value=11 Score=22.11 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=15.2
Q ss_pred CCCcEEEEEecccCCCCCCCCeEEE
Q 031448 49 LTGDVILAEYVSHRVGRLGPGDIVF 73 (159)
Q Consensus 49 ~~Gd~vlv~~~~~~~~~~~~GDiVv 73 (159)
|-||+|++.+... .+-..|-|++
T Consensus 6 PlgdrVLVk~~~~--~~kT~gGIiL 28 (96)
T d1we3o_ 6 PLGDRVVVKRIEE--EPKTKGGIVL 28 (96)
T ss_dssp ECTTCEEEEECCC--CSSCTTCCCC
T ss_pred EcCCEEEEEEccc--cceecccEEe
Confidence 4689999987542 3334577765
No 10
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus thermophilus [TaxId: 274]}
Probab=52.26 E-value=22 Score=21.86 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.7
Q ss_pred EecCCeEEEEcCCCCCCCCCCccccccCC
Q 031448 111 VVPKGHVWIQGDNLYASRDSRQFGPVPYG 139 (159)
Q Consensus 111 ~vp~~~~~v~gdn~~~s~DSR~~G~V~~~ 139 (159)
...+|.+-++.++ .+-.-+|-+|||+++
T Consensus 78 ~F~~Na~VLl~~~-~~p~GTrI~Gpv~~e 105 (122)
T d2j01o1 78 RFDDNAAVIINNQ-LEPRGTRVFGPVARE 105 (122)
T ss_dssp ECSSCEEEEECTT-SCCSSSCCCSCCCTH
T ss_pred EcCCCEEEEECCC-CCEeeeEEeccchHH
Confidence 3456677777554 478899999999975
No 11
>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=47.62 E-value=23 Score=20.67 Aligned_cols=89 Identities=13% Similarity=0.043 Sum_probs=45.1
Q ss_pred CCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEEecCCeEEEEcCCCCC--
Q 031448 49 LTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVVPKGHVWIQGDNLYA-- 126 (159)
Q Consensus 49 ~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~vp~~~~~v~gdn~~~-- 126 (159)
|-||+|++.+... .+-..|-|++=.. ..+......|+|+.-....-. .....+..+..|..-+.+.+...
T Consensus 7 PlgdrVLVk~~~~--~~kT~gGIiLp~~--~~~~~~~G~VvavG~g~~~~~----~~~~~~~~vk~GD~Vl~~~~~g~~v 78 (99)
T d1p3ha_ 7 PLEDKILVQANEA--ETTTASGLVIPDT--AKEKPQEGTVVAVGPGRWDED----GEKRIPLDVAEGDTVIYSKYGGTEI 78 (99)
T ss_dssp ECTTEEEEEECCC--CCBCTTSCBCCCS--SCCSEEEEEEEEECCCEECSS----SSCEECCSCCTTCEEEEECTTCEEE
T ss_pred EcCCEEEEEEcch--hcccccceEeccc--cccCceEEEEEEECCceEcCC----CCEecCCeeecCCEEEEcccCceEE
Confidence 4699999987542 3345677776322 234556677777643221110 00111223445555555554311
Q ss_pred CCCCCccccccCCCeEEEE
Q 031448 127 SRDSRQFGPVPYGLIEGKA 145 (159)
Q Consensus 127 s~DSR~~G~V~~~~I~G~v 145 (159)
..|...|=.++.++|+|++
T Consensus 79 ~~dg~~y~ii~e~dIlavi 97 (99)
T d1p3ha_ 79 KYNGEEYLILSARDVLAVV 97 (99)
T ss_dssp EETTEEEEEEEGGGEEEEE
T ss_pred EECCEEEEEEEHHHEEEEE
Confidence 1233334477778888775
No 12
>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=45.67 E-value=7.7 Score=21.71 Aligned_cols=10 Identities=50% Similarity=0.740 Sum_probs=4.6
Q ss_pred CCCCeEEEEe
Q 031448 66 LGPGDIVFVR 75 (159)
Q Consensus 66 ~~~GDiVvf~ 75 (159)
+..||.|.+.
T Consensus 47 i~~GD~V~Ve 56 (71)
T d1hr0w_ 47 ILPGDRVVVE 56 (71)
T ss_dssp CCTTCEEEEE
T ss_pred ecCCCEEEEE
Confidence 4444444444
No 13
>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}
Probab=39.17 E-value=32 Score=19.84 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=43.4
Q ss_pred CCCcEEEEEecccCCCCCCCCeEEEEecCCCCCceEEEEEEEeCCCEEEEeCCCCCCCcceEEecCCeEEEEcCCCC---
Q 031448 49 LTGDVILAEYVSHRVGRLGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDSCHTVVVPKGHVWIQGDNLY--- 125 (159)
Q Consensus 49 ~~Gd~vlv~~~~~~~~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd~v~i~~~~~~~~~~~~~vp~~~~~v~gdn~~--- 125 (159)
|-||+|++.+... .+-..|-|++=.. .........|+++.-.... ......+..+..|..-+.+++..
T Consensus 5 PlgdrVLVk~~~~--e~kT~gGIiLp~~--~~~~~~~g~VvavG~g~~~-----~~g~~~~~~vk~GD~Vl~~~~~g~~~ 75 (97)
T d1aono_ 5 PLHDRVIVKRKEV--ETKSAGGIVLTGS--AAAKSTRGEVLAVGNGRIL-----ENGEVKPLDVKVGDIVIFNDGYGVKS 75 (97)
T ss_dssp ECTTEEEEEECCT--TCTTTTSSCCCCC--CSCCCCEEEEEEECSBCCT-----TSSCCCBCSCCTTCEEEECCCSSCEE
T ss_pred EcCCEEEEEEccc--ccEecceEEECCc--cccCceeEEEEEEeeeEEc-----cCCcCccccCCCCCEEEEecccCceE
Confidence 4799999987542 3334566664221 1223344555555311000 00111223345555555554321
Q ss_pred CCCCCCccccccCCCeEEEE
Q 031448 126 ASRDSRQFGPVPYGLIEGKA 145 (159)
Q Consensus 126 ~s~DSR~~G~V~~~~I~G~v 145 (159)
...|...|=.++.++|+|++
T Consensus 76 ~~~dg~~y~ii~e~dIlavi 95 (97)
T d1aono_ 76 EKIDNEEVLIMSESDILAIV 95 (97)
T ss_dssp EESSSCEEEEEETTTEEEEE
T ss_pred EEECCEEEEEEEHHHEEEEE
Confidence 12444455578888888875
No 14
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.49 E-value=30 Score=20.47 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.4
Q ss_pred CCCCCCeEEEEecCC
Q 031448 64 GRLGPGDIVFVRSPV 78 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~ 78 (159)
..++.||+++|....
T Consensus 83 ~~Lk~GD~~~F~~~~ 97 (117)
T d1wida_ 83 KNLRAGDVVSFSRSN 97 (117)
T ss_dssp TTCCTTCEEEEEECC
T ss_pred cCCCCCCEEEEEEEe
Confidence 579999999998644
No 15
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=32.81 E-value=21 Score=17.98 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhce
Q 031448 7 LAKEALTQTLTFARFFCLFHVTNHYL 32 (159)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (159)
++|.+++.+..+.+...++..+.+|+
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 44556666666666666655555543
No 16
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=29.57 E-value=8.1 Score=21.62 Aligned_cols=12 Identities=42% Similarity=0.426 Sum_probs=7.6
Q ss_pred CCCCCeEEEEec
Q 031448 65 RLGPGDIVFVRS 76 (159)
Q Consensus 65 ~~~~GDiVvf~~ 76 (159)
.+..||.|....
T Consensus 45 ~i~~GD~V~Vel 56 (71)
T d1ah9a_ 45 RILTGDKVTVEL 56 (71)
T ss_dssp CCCTTCEECCEE
T ss_pred EecCCCEEEEEE
Confidence 466677766664
No 17
>d1twia1 b.49.2.3 (A:15-49,A:314-448) Diaminopimelate decarboxylase LysA {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.13 E-value=27 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=13.7
Q ss_pred CCcEEEEEecccCCCCCCCCeEEEEec
Q 031448 50 TGDVILAEYVSHRVGRLGPGDIVFVRS 76 (159)
Q Consensus 50 ~Gd~vlv~~~~~~~~~~~~GDiVvf~~ 76 (159)
.+|.+.-+... .+++.||+++|.+
T Consensus 96 s~D~l~~~~~l---p~l~~GD~l~i~~ 119 (170)
T d1twia1 96 SSDVFGRDREL---DKVEVGDVLAIFD 119 (170)
T ss_dssp TTCEEEEEEEE---ECCCTTCEEEEEC
T ss_pred cceEEEEeeec---cccCCCCEEEEeC
Confidence 45655544432 2567777777764
No 18
>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}
Probab=28.56 E-value=30 Score=20.24 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.9
Q ss_pred CCCCCCeEEEEecCCCCCceEEEEEEEeCC
Q 031448 64 GRLGPGDIVFVRSPVDPNKIVTKRIVGVEG 93 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~~~~~~~vkRVi~~pG 93 (159)
-.|++||.|++. +.++.++|---..|
T Consensus 59 ykPrr~D~Vv~~----G~~~~VTr~~~~ng 84 (93)
T d2pp6a1 59 VIPRRGDRVVLR----GSEFTVTRIRRFNG 84 (93)
T ss_dssp CCCCTTCEEEET----TEEEEEEEEEEETT
T ss_pred cccCCCCeEEec----CcEEEEEEEEEECC
Confidence 479999999986 56788998876655
No 19
>d1hkva1 b.49.2.3 (A:2-45,A:311-447) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.54 E-value=29 Score=22.83 Aligned_cols=9 Identities=33% Similarity=0.327 Sum_probs=5.7
Q ss_pred CCCEEEEeC
Q 031448 92 EGDRVTYFK 100 (159)
Q Consensus 92 pGd~v~i~~ 100 (159)
+||.+.+.+
T Consensus 127 ~GDlLai~~ 135 (181)
T d1hkva1 127 PGDLVAVAA 135 (181)
T ss_dssp TTCEEEESC
T ss_pred CcCEEEEec
Confidence 466666654
No 20
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.75 E-value=14 Score=19.56 Aligned_cols=11 Identities=0% Similarity=-0.230 Sum_probs=8.9
Q ss_pred EEeCCCEEEEe
Q 031448 89 VGVEGDRVTYF 99 (159)
Q Consensus 89 i~~pGd~v~i~ 99 (159)
-++|||++.++
T Consensus 29 ~alPGE~V~v~ 39 (60)
T d1uwva1 29 GLLPQENAEVT 39 (60)
T ss_dssp TCCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 47899999874
No 21
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.53 E-value=53 Score=22.05 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=23.7
Q ss_pred CCCCCCeEEEEecCCCCCceEEEEEEEe----CCCEEEE
Q 031448 64 GRLGPGDIVFVRSPVDPNKIVTKRIVGV----EGDRVTY 98 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~~~~~~~vkRVi~~----pGd~v~i 98 (159)
-+++.||.|++++|. .+...+.+|-.+ .|+.+++
T Consensus 51 ~e~~~GD~Vlvk~~~-~~~~~v~iI~ei~~~~~~~~~e~ 88 (217)
T d1m4za_ 51 IKLGRGDSVVMHNEA-AGTYSVYMIQELRLNTLNNVVEL 88 (217)
T ss_dssp CEECTTCEEEEEETT-TTEEEEEEEEEEEEETTTTEEEE
T ss_pred eEEecCCEEEEeCCC-CCCceEEEEeeeccCcccchhee
Confidence 468999999999765 456666666654 5555544
No 22
>d1f3ta1 b.49.2.3 (A:14-43,A:284-422) Eukaryotic ornithine decarboxylase (ODC) {Trypanosoma brucei [TaxId: 5691]}
Probab=23.35 E-value=35 Score=21.93 Aligned_cols=8 Identities=13% Similarity=0.414 Sum_probs=3.8
Q ss_pred CCEEEEeC
Q 031448 93 GDRVTYFK 100 (159)
Q Consensus 93 Gd~v~i~~ 100 (159)
||.+.+.+
T Consensus 125 GD~L~~~n 132 (169)
T d1f3ta1 125 GEWLLFED 132 (169)
T ss_dssp TCEEEECS
T ss_pred CCEEEEeC
Confidence 45544443
No 23
>d7odca1 b.49.2.3 (A:2-43,A:284-418) Eukaryotic ornithine decarboxylase (ODC) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.27 E-value=35 Score=22.12 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=7.1
Q ss_pred CCCCCeEEEEec
Q 031448 65 RLGPGDIVFVRS 76 (159)
Q Consensus 65 ~~~~GDiVvf~~ 76 (159)
+++.||+++|..
T Consensus 133 ~l~vGD~L~f~~ 144 (177)
T d7odca1 133 EMHVGDWMLFEN 144 (177)
T ss_dssp CCCTTCEEEECS
T ss_pred cccccCEEEEeC
Confidence 566666666653
No 24
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=21.52 E-value=7.4 Score=18.32 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhceEEeEEEeCCC
Q 031448 14 QTLTFARFFCLFHVTNHYLWSPTLVFGPS 42 (159)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~S 42 (159)
|+...+..+.++.++..|++..|.=.|+|
T Consensus 5 Wlv~tv~G~~vi~~vG~FfYGsYsGlGSs 33 (34)
T d2axtj1 5 WIVATVAGMGVIVIVGLFFYGAYAGLGSS 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSTTSC
T ss_pred EEeeehhhhhhHhheeeeeeeeecccccC
Confidence 34444444444445555544443333333
No 25
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.36 E-value=34 Score=21.32 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEecCCeEEEEcCCCCCCCCCCccccccCCC
Q 031448 110 VVVPKGHVWIQGDNLYASRDSRQFGPVPYGL 140 (159)
Q Consensus 110 ~~vp~~~~~v~gdn~~~s~DSR~~G~V~~~~ 140 (159)
....+|.+-++.++ .+-.-+|-+|||+++-
T Consensus 88 i~FddNa~VLi~~~-~~p~GTRI~GpV~~El 117 (132)
T d1vqok1 88 VKFEDNAAVIVDEN-EDPRGTELKGPIAREV 117 (132)
T ss_dssp EEESSCEEEEECTT-SCBSSSCBCSCBCHHH
T ss_pred EEcCCCEEEEECCC-CCEeeeEEeccHhHHH
Confidence 33455666666444 4778899999998753
No 26
>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]}
Probab=20.77 E-value=51 Score=19.37 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=20.9
Q ss_pred CCCCCCeEEEEecCCCCCceEEEEEEEeCCC
Q 031448 64 GRLGPGDIVFVRSPVDPNKIVTKRIVGVEGD 94 (159)
Q Consensus 64 ~~~~~GDiVvf~~p~~~~~~~vkRVi~~pGd 94 (159)
..++.||+|.+..+ +....-+|.++|..
T Consensus 43 ~~vk~GDvI~i~~~---~~~~~i~V~~l~~~ 70 (104)
T d1dm9a_ 43 KIVELNATLTLRQG---NDERTVIVKAITEQ 70 (104)
T ss_dssp CBCCTTCEEEEEET---TEEEEEEECEEESC
T ss_pred ccCCCCCEEEEEeC---CeEEEEEEEEcccc
Confidence 57899999999863 45666677777654
Done!