BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031450
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LJW|A Chain A, Solution Nmr Structure Of Alr2454 Protein From Nostoc Sp.
           Strain Pcc 7120, Northeast Structural Genomics
           Consortium Target Nsr264
          Length = 110

 Score = 35.8 bits (81), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 4/46 (8%)

Query: 111 FSGLDLATLIRKKYGRSYDVQLIKKEFMGRNLLALNVMWKYMEQGN 156
            +G +L  L+  K+G SYDVQ  + +  G+  + L VMWKY+EQ +
Sbjct: 1   MTGQELRQLLLDKWGYSYDVQFRRTQ--GK--IFLQVMWKYLEQAS 42


>pdb|2B98|A Chain A, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase
 pdb|2B98|B Chain B, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase
 pdb|2B98|C Chain C, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase
 pdb|2B98|D Chain D, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase
 pdb|2B98|E Chain E, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase
 pdb|2B99|A Chain A, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase Complex With A Substrate Analog Inhibitor
 pdb|2B99|B Chain B, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase Complex With A Substrate Analog Inhibitor
 pdb|2B99|C Chain C, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase Complex With A Substrate Analog Inhibitor
 pdb|2B99|D Chain D, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase Complex With A Substrate Analog Inhibitor
 pdb|2B99|E Chain E, Crystal Structure Of An Archaeal Pentameric Riboflavin
           Synthase Complex With A Substrate Analog Inhibitor
          Length = 156

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 104 VGVDDSTFSGLDLATLIRKKYGR-SYDVQLIKKEFMGRNLLALNVMWKYMEQGNCE 158
           VG+ D+TF+ +D+A++  KK    S ++++I+K   G   L +    K +E+  C+
Sbjct: 5   VGIVDTTFARVDMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACK-KLLEEEGCD 59


>pdb|4IPT|A Chain A, The Crystal Structure Of A Short-chain
           Dehydrogenases/reductase (ethylated) From Veillonella
           Parvula Dsm 2008
          Length = 221

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 83  ESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNL 142
           ES  D   +   L R+N+ R++GV  +  SG +    + K    +  +  ++ E   RN+
Sbjct: 83  ESGSDXASIVKALSRKNIRRVIGVSXAGLSG-EFPVALEKWTFDNLPISYVQGERQARNV 141

Query: 143 L--------ALNVMWKY 151
           L         L + W Y
Sbjct: 142 LRESNLNYTILRLTWLY 158


>pdb|4HNG|A Chain A, The Crystal Structure Of A Short-Chain
           DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
           Parvula Dsm 2008
 pdb|4HNH|A Chain A, The Crystal Structure Of A Short-Chain
           DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
           Parvula Dsm 2008 In Complex With Nadp
 pdb|4HNH|B Chain B, The Crystal Structure Of A Short-Chain
           DehydrogenasesREDUCTASE (WIDE Type) From Veillonella
           Parvula Dsm 2008 In Complex With Nadp
          Length = 221

 Score = 25.8 bits (55), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 83  ESPKDENGVNSELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSYDVQLIKKEFMGRNL 142
           ES  D   +   L R+N+ R++GV  +  SG +    + K    +  +  ++ E   RN+
Sbjct: 83  ESGSDMASIVKALSRKNIRRVIGVSMAGLSG-EFPVALEKWTFDNLPISYVQGERQARNV 141

Query: 143 L 143
           L
Sbjct: 142 L 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,844,545
Number of Sequences: 62578
Number of extensions: 173487
Number of successful extensions: 349
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 6
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)