BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031450
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O84462|TARP_CHLTR Translocated actin-recruiting phosphoprotein OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=tarP PE=3 SV=1
Length = 1005
Score = 35.0 bits (79), Expect = 0.21, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 47 SSHDKHISGC------GPIFCSAVDDG------NDPDDGSGDDTSNKKESPKDEN-GVNS 93
S+ D +SG P +AV +G +D D G GDD S+ S DE+ GV+S
Sbjct: 672 SAQDTKLSGNTGAGDDDPTTTAAVGNGAEEITLSDTDSGIGDDVSDTASSSGDESGGVSS 731
Query: 94 ELLRENLERIVGVDDSTFSGLDLATLIRKKYGRSY 128
N VG D SGLD+ +RK + Y
Sbjct: 732 PSSESNKNTAVGNDGP--SGLDILAAVRKHLDKVY 764
>sp|B2RMK4|DXS_PORG3 1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis
(strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dxs PE=3
SV=1
Length = 634
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 69 DPDDGSGDDTSNKKESPKDENGVNSEL--LRENLERIVGVDDSTFSGLDLATLIRKKYGR 126
D G NK E PK ++ L L + ERIVGV + +G + L++K R
Sbjct: 309 DIKSGERKKGENKPEPPKFQDVFGHTLVELADRDERIVGVTPAMPTGCSMTFLMKKYPNR 368
Query: 127 SYDVQL 132
+YDV +
Sbjct: 369 AYDVGI 374
>sp|Q7MSZ3|DXS_PORGI 1-deoxy-D-xylulose-5-phosphate synthase OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=dxs PE=3 SV=1
Length = 634
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 69 DPDDGSGDDTSNKKESPKDENGVNSEL--LRENLERIVGVDDSTFSGLDLATLIRKKYGR 126
D G NK E PK ++ L L + ER+VGV + +G + L++K R
Sbjct: 309 DIKSGERKKGENKPEPPKFQDVFGHTLVELADRDERVVGVTPAMPTGCSMTFLMKKYPNR 368
Query: 127 SYDVQL 132
+YDV +
Sbjct: 369 AYDVGI 374
>sp|B8GQ68|ACCA_THISH Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=accA PE=3
SV=1
Length = 319
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 55 GCGPIFCSAVDDGNDPDDGSGDDTSNKKE-------SPKDENGV--NSELLRENLERIVG 105
GC I + + +D + G ++ KE P+ G N E + NL +
Sbjct: 229 GCASILWKSAERASDAAEALGITSARLKELGLIDTIIPEPLGGAHRNPEQMAGNLHTALA 288
Query: 106 VDDSTFSGLDLATLIRKKYGR 126
TFS +D L+ ++YGR
Sbjct: 289 EALQTFSAMDTDALLERRYGR 309
>sp|P11434|41_XENLA Cytoskeletal protein 4.1 OS=Xenopus laevis GN=epb41 PE=2 SV=1
Length = 801
Score = 30.0 bits (66), Expect = 5.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 12 WSVGVEEHHLHRARFNKIIPYSRY--FGSNFPYKGLFSSHDKHISG 55
W V VE H R + IP R+ GS F Y G + +H S
Sbjct: 460 WKVCVEHHTFFRLTSTESIPKHRFLSLGSTFRYSGRTQAQTRHASA 505
>sp|P44224|VG28_HAEIN Mu-like prophage FluMu protein gp28 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1500
PE=4 SV=1
Length = 508
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 9 QFNWSVGVEEHHLHRARFNKIIPYSRYFGSNFPYKGLFSSHDKHISGCGPIFC 61
QFN + G + L I+ Y YF S F K L SS+ K++ G + C
Sbjct: 87 QFNRAAGQIQEELFNDEDKDILTYVIYFASGFKIKAL-SSNPKNLRGMQGVVC 138
>sp|Q0BWA9|MNMG_HYPNA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Hyphomonas neptunium (strain ATCC 15444) GN=mnmG PE=3
SV=1
Length = 621
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 53 ISGCGPIFCSAVDDG-NDPDDGSGDDTSNKKESPKDE----NGVNSELLRENLERIVGVD 107
ISG GP +C +++D N D + E D NG+++ L E E+ +
Sbjct: 268 ISGRGPRYCPSIEDKVNRFGDRDRHQVFLEPEGLDDHTVYPNGISTSLPEEVQEKFI--- 324
Query: 108 DSTFSGLDLATLIRKKYGRSYD 129
T GL+ A +++ Y YD
Sbjct: 325 -RTIPGLEDAVILQHAYAIEYD 345
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,592,039
Number of Sequences: 539616
Number of extensions: 3059234
Number of successful extensions: 10037
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 9924
Number of HSP's gapped (non-prelim): 137
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)