BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031454
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2COU|A Chain A, Solution Structure Of The Second Brct Domain Of Epithelial
           Cell Transforming 2
          Length = 109

 Score = 29.6 bits (65), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 4/40 (10%)

Query: 112 LKKLPFDCTSGLERKLIIKGQEWWWNNLQWGDQATQNAFL 151
           +K LPF+ +    +KL +  QEW+W ++Q   +A +  +L
Sbjct: 60  VKDLPFEPS----KKLFVVKQEWFWGSIQMDARAGETMYL 95


>pdb|3L46|A Chain A, Crystal Structure Of The Second Brct Domain Of Epithelial
           Cell Transforming 2 (Ect2)
 pdb|3L46|B Chain B, Crystal Structure Of The Second Brct Domain Of Epithelial
           Cell Transforming 2 (Ect2)
          Length = 112

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 4/40 (10%)

Query: 112 LKKLPFDCTSGLERKLIIKGQEWWWNNLQWGDQATQNAFL 151
           +K LPF+ +    +KL +  QEW+W ++Q   +A +  +L
Sbjct: 69  VKDLPFEPS----KKLYVVKQEWFWGSIQMDARAGETMYL 104


>pdb|3O10|A Chain A, Crystal Structure Of The Hepn Domain From Human Sacsin
 pdb|3O10|B Chain B, Crystal Structure Of The Hepn Domain From Human Sacsin
 pdb|3O10|C Chain C, Crystal Structure Of The Hepn Domain From Human Sacsin
 pdb|3O10|D Chain D, Crystal Structure Of The Hepn Domain From Human Sacsin
          Length = 141

 Score = 28.9 bits (63), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 77  LECLSLYGLEKLRSIYPRALPFPHL 101
           +  L  YG++ L++ YP  LPFP +
Sbjct: 85  VHTLEAYGVDSLKTRYPDLLPFPQI 109


>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
           Iii Effector Xcv3220 (Xopl)
          Length = 328

 Score = 28.1 bits (61), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 50  HDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLC 109
           H  H   +   L +L    Q    FA LE L+L     LR++         L+EL +  C
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQ---FAGLETLTL-ARNPLRALPASIASLNRLRELSIRAC 160

Query: 110 PELKKLP 116
           PEL +LP
Sbjct: 161 PELTELP 167


>pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
 pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
 pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
 pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
 pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
 pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
          Length = 225

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)

Query: 109 CPELKKLPFDCTSGLERKLIIKGQEWWWNNL 139
           CP+ K++  +C   +E KL+ K     WNNL
Sbjct: 81  CPDAKEVIINCPQDIEHKLLFK-----WNNL 106


>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
           Rat Liver
 pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
           Rat Liver
 pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
           3-Oh-Dodecanoate
          Length = 661

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 24  RVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECL--- 80
           +  +   K + V W + + +L R S   CHY+   V  +KL  ++Q++   A L  L   
Sbjct: 503 QTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKL-PKIQDKAVQAVLRNLCLL 561

Query: 81  -SLYGLEK 87
            SLYG+ +
Sbjct: 562 YSLYGISQ 569


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,886,208
Number of Sequences: 62578
Number of extensions: 191977
Number of successful extensions: 518
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 8
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.7 bits)