Query 031454
Match_columns 159
No_of_seqs 106 out of 1100
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:20:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 98.8 2.2E-08 4.8E-13 94.7 8.3 114 3-117 594-722 (1153)
2 PLN03210 Resistant to P. syrin 98.4 4.2E-07 9E-12 86.2 7.3 99 16-118 630-743 (1153)
3 KOG4658 Apoptotic ATPase [Sign 98.2 2.4E-07 5.3E-12 85.6 0.4 130 21-150 748-883 (889)
4 PF13855 LRR_8: Leucine rich r 97.4 0.00028 6.1E-09 43.9 3.9 38 20-58 1-40 (61)
5 PRK15386 type III secretion pr 97.3 0.00038 8.3E-09 59.6 5.6 81 19-118 51-133 (426)
6 PF13855 LRR_8: Leucine rich r 97.2 0.0006 1.3E-08 42.3 4.3 59 42-110 1-60 (61)
7 PRK15386 type III secretion pr 97.2 0.001 2.3E-08 57.0 6.3 105 4-112 58-169 (426)
8 PF12799 LRR_4: Leucine Rich r 97.0 0.001 2.2E-08 39.2 3.2 39 20-59 1-40 (44)
9 PF14580 LRR_9: Leucine-rich r 96.8 0.00094 2E-08 50.8 3.0 96 5-110 26-124 (175)
10 PLN00113 leucine-rich repeat r 96.8 0.0034 7.3E-08 58.4 6.7 44 74-117 211-254 (968)
11 PLN00113 leucine-rich repeat r 96.7 0.0034 7.3E-08 58.4 6.1 36 18-53 91-129 (968)
12 KOG0617 Ras suppressor protein 96.5 0.0004 8.6E-09 53.5 -1.3 88 10-108 23-111 (264)
13 PRK15370 E3 ubiquitin-protein 95.4 0.027 5.8E-07 51.8 5.3 92 20-117 199-300 (754)
14 PRK15387 E3 ubiquitin-protein 95.3 0.041 9E-07 50.8 6.1 45 10-58 213-257 (788)
15 PRK15370 E3 ubiquitin-protein 95.3 0.021 4.6E-07 52.5 4.2 49 8-59 251-299 (754)
16 KOG3665 ZYG-1-like serine/thre 95.2 0.0087 1.9E-07 54.6 1.3 35 18-52 146-183 (699)
17 PF14580 LRR_9: Leucine-rich r 95.1 0.018 4E-07 43.8 2.6 73 7-87 51-125 (175)
18 PRK15387 E3 ubiquitin-protein 94.2 0.13 2.9E-06 47.6 6.4 46 9-59 233-278 (788)
19 PF12799 LRR_4: Leucine Rich r 93.9 0.057 1.2E-06 31.6 2.3 16 42-58 1-16 (44)
20 PF13504 LRR_7: Leucine rich r 93.8 0.044 9.5E-07 25.6 1.5 17 99-116 1-17 (17)
21 PLN03150 hypothetical protein; 93.4 0.16 3.4E-06 45.7 5.4 31 22-52 420-452 (623)
22 KOG0618 Serine/threonine phosp 93.2 0.032 6.9E-07 52.1 0.7 98 12-111 375-488 (1081)
23 KOG3665 ZYG-1-like serine/thre 93.1 0.042 9.1E-07 50.2 1.2 33 18-50 171-203 (699)
24 PLN03150 hypothetical protein; 92.8 0.19 4.2E-06 45.2 5.1 91 17-117 439-533 (623)
25 KOG4658 Apoptotic ATPase [Sign 92.5 0.083 1.8E-06 49.5 2.4 96 12-107 537-650 (889)
26 KOG3864 Uncharacterized conser 91.8 0.018 3.8E-07 45.1 -2.4 70 38-114 121-191 (221)
27 KOG1644 U2-associated snRNP A' 90.1 0.52 1.1E-05 37.1 4.2 60 17-84 61-122 (233)
28 KOG0617 Ras suppressor protein 90.0 0.06 1.3E-06 41.7 -1.0 58 16-83 52-110 (264)
29 KOG3207 Beta-tubulin folding c 89.4 0.065 1.4E-06 46.3 -1.3 91 18-109 170-281 (505)
30 KOG2120 SCF ubiquitin ligase, 87.8 0.066 1.4E-06 44.6 -2.2 83 20-110 286-374 (419)
31 KOG4341 F-box protein containi 87.7 0.025 5.5E-07 48.5 -4.8 92 16-114 134-231 (483)
32 cd00116 LRR_RI Leucine-rich re 87.1 0.24 5.2E-06 39.6 0.7 34 20-53 108-148 (319)
33 KOG3864 Uncharacterized conser 86.7 0.24 5.2E-06 38.8 0.4 45 70-114 120-166 (221)
34 KOG0531 Protein phosphatase 1, 84.9 0.55 1.2E-05 39.9 1.8 46 7-52 104-150 (414)
35 PF00560 LRR_1: Leucine Rich R 84.9 0.45 9.8E-06 23.4 0.8 18 100-118 1-18 (22)
36 smart00367 LRR_CC Leucine-rich 84.7 0.61 1.3E-05 23.8 1.3 16 98-113 1-16 (26)
37 KOG3207 Beta-tubulin folding c 81.0 0.2 4.3E-06 43.4 -2.3 38 16-53 142-183 (505)
38 KOG2739 Leucine-rich acidic nu 80.9 0.49 1.1E-05 38.2 -0.0 41 71-112 112-156 (260)
39 KOG0472 Leucine-rich repeat pr 80.3 0.12 2.6E-06 44.7 -3.9 101 16-119 179-294 (565)
40 KOG0444 Cytoskeletal regulator 79.9 0.36 7.8E-06 44.2 -1.2 42 75-117 339-380 (1255)
41 cd00116 LRR_RI Leucine-rich re 79.8 0.49 1.1E-05 37.8 -0.4 35 19-53 80-119 (319)
42 KOG1644 U2-associated snRNP A' 79.6 4.3 9.3E-05 32.1 4.8 57 19-84 41-97 (233)
43 KOG4194 Membrane glycoprotein 74.9 0.76 1.6E-05 41.6 -0.6 42 72-115 389-431 (873)
44 KOG1947 Leucine rich repeat pr 73.7 1.3 2.8E-05 37.3 0.5 94 19-112 187-308 (482)
45 KOG2120 SCF ubiquitin ligase, 70.2 2 4.2E-05 36.1 0.8 62 18-87 311-375 (419)
46 KOG1259 Nischarin, modulator o 69.7 1.2 2.6E-05 37.4 -0.6 34 19-52 306-339 (490)
47 KOG2123 Uncharacterized conser 68.6 0.25 5.5E-06 40.8 -4.6 31 19-49 40-70 (388)
48 KOG1947 Leucine rich repeat pr 68.1 0.79 1.7E-05 38.6 -2.0 37 19-55 268-308 (482)
49 KOG0444 Cytoskeletal regulator 66.2 0.65 1.4E-05 42.6 -2.9 34 74-108 244-277 (1255)
50 smart00370 LRR Leucine-rich re 65.1 5.4 0.00012 19.9 1.6 16 20-35 2-17 (26)
51 smart00369 LRR_TYP Leucine-ric 65.1 5.4 0.00012 19.9 1.6 16 20-35 2-17 (26)
52 KOG0472 Leucine-rich repeat pr 64.7 1.5 3.2E-05 38.1 -0.9 92 17-110 432-539 (565)
53 PF13306 LRR_5: Leucine rich r 58.4 54 0.0012 22.1 6.8 82 21-117 13-97 (129)
54 KOG4194 Membrane glycoprotein 57.2 12 0.00026 34.3 3.3 41 19-60 77-119 (873)
55 smart00364 LRR_BAC Leucine-ric 55.8 7.3 0.00016 20.3 1.1 18 20-37 2-19 (26)
56 KOG2739 Leucine-rich acidic nu 53.9 7.5 0.00016 31.5 1.4 35 20-54 91-128 (260)
57 KOG4341 F-box protein containi 53.7 9.6 0.00021 33.2 2.1 95 19-113 293-415 (483)
58 PF13516 LRR_6: Leucine Rich r 52.6 7.9 0.00017 18.9 0.9 12 42-53 2-13 (24)
59 KOG4237 Extracellular matrix p 51.9 7.7 0.00017 33.7 1.2 57 19-84 273-331 (498)
60 smart00365 LRR_SD22 Leucine-ri 48.2 13 0.00028 19.2 1.3 17 19-35 1-17 (26)
61 KOG0531 Protein phosphatase 1, 46.3 12 0.00025 31.8 1.5 37 16-52 91-128 (414)
62 KOG0532 Leucine-rich repeat (L 42.4 6.4 0.00014 35.7 -0.7 50 8-58 131-181 (722)
63 KOG1259 Nischarin, modulator o 40.4 5.3 0.00012 33.7 -1.4 35 18-52 327-362 (490)
64 COG4886 Leucine-rich repeat (L 40.2 13 0.00029 30.8 0.9 43 11-53 129-174 (394)
65 KOG0618 Serine/threonine phosp 36.2 8.7 0.00019 36.6 -0.9 63 17-88 404-489 (1081)
66 KOG2982 Uncharacterized conser 30.6 21 0.00046 30.1 0.6 37 74-110 172-210 (418)
67 COG4886 Leucine-rich repeat (L 28.2 22 0.00048 29.5 0.3 52 7-59 149-202 (394)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.76 E-value=2.2e-08 Score=94.70 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=75.1
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCccccccccccc----------c---c
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGG----------Q---M 68 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~----------~---~ 68 (159)
++|.+|+.+++|....+.+|++|++.+++++.++ ....+++|+.|++++|..+..++....... + .
T Consensus 594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~l 673 (1153)
T PLN03210 594 LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVEL 673 (1153)
T ss_pred EEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcccc
Confidence 5789999999999888888888888875566653 245677777777777766665543111000 0 0
Q ss_pred -CCCCCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 69 -QNRIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 69 -~~~~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
.....+++|+.|.+.+|.+++.++... .+++|+.|.+.+|..++.+|.
T Consensus 674 p~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 674 PSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred chhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 123345677777777777777766532 567777777777777776664
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.45 E-value=4.2e-07 Score=86.17 Aligned_cols=99 Identities=21% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCCCCceEEEEec-CCcCCcccccCCCCcceEEEEcCcCCccccccccccc--------------ccCCCCCCCcccee
Q 031454 16 TNGFFSLQRVSIGR-SKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG--------------QMQNRIPFARLECL 80 (159)
Q Consensus 16 ~~~~~~L~~L~I~~-~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~--------------~~~~~~~fp~L~~L 80 (159)
...+++|+.|++++ ..++.++.+..+++|++|.+.+|..+.+++..-.... .......+++|+.|
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L 709 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL 709 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence 45688889999888 7788777778888888888888888877664311000 01222357899999
Q ss_pred cccCcccccccCCCCcCCCCccEEeEeccCCCCccCCC
Q 031454 81 SLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 81 ~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
.+.+|..++.++. ..++|+.|.+.++. +..+|..
T Consensus 710 ~Lsgc~~L~~~p~---~~~nL~~L~L~~n~-i~~lP~~ 743 (1153)
T PLN03210 710 NLSGCSRLKSFPD---ISTNISWLDLDETA-IEEFPSN 743 (1153)
T ss_pred eCCCCCCcccccc---ccCCcCeeecCCCc-ccccccc
Confidence 9999999988764 34689999988774 7777754
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.24 E-value=2.4e-07 Score=85.56 Aligned_cols=130 Identities=36% Similarity=0.578 Sum_probs=94.2
Q ss_pred CceEEEEec-CCcCCcccccCCCCcceEEEEcCcCCccccccccccccc-CCCCCCCcccee-cccCcccccccCCCCcC
Q 031454 21 SLQRVSIGR-SKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQM-QNRIPFARLECL-SLYGLEKLRSIYPRALP 97 (159)
Q Consensus 21 ~L~~L~I~~-~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~-~~~~~fp~L~~L-~l~~~~~L~~i~~~~~~ 97 (159)
+|..+.+.+ ...+.++|....|||+.|++..|..++++++..+..... .....|.++..+ .+.+.+.++++...+..
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~ 827 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS 827 (889)
T ss_pred HHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC
Confidence 333344444 444444566678999999999999999987653321111 124568888888 69999999999888888
Q ss_pred CCCccEEeEeccCCCCccCCCCCCCCC---CceEEechhhhhhhcccCCccccccc
Q 031454 98 FPHLKELKVDLCPELKKLPFDCTSGLE---RKLIIKGQEWWWNNLQWGDQATQNAF 150 (159)
Q Consensus 98 ~psLe~L~i~~Cp~L~~lP~~~~~~~~---~l~~v~~~~e~~~~l~~~~~~~~~~~ 150 (159)
++.|+++.|.+||++.++|........ ...+.-.+.+|-..++|.+++++..+
T Consensus 828 ~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 828 FLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccchhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence 899999999999999999986544432 22333345578889999999988765
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.37 E-value=0.00028 Score=43.86 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=19.6
Q ss_pred CCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccc
Q 031454 20 FSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEI 58 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l 58 (159)
++|++|++++++++.++ .+..+++|++|+|+++ .++.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i 40 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSI 40 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEE
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCcc
Confidence 35556666655555543 2345566666666533 34444
No 5
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.35 E-value=0.00038 Score=59.60 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=56.4
Q ss_pred CCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCCcCC
Q 031454 19 FFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRALPF 98 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~~~~ 98 (159)
..+++.|+|++..++.++ ...++|++|+|.+|.+++.++. ...++|++|.+.+|.+++.++.
T Consensus 51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~-----------~LP~nLe~L~Ls~Cs~L~sLP~----- 112 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPG-----------SIPEGLEKLTVCHCPEISGLPE----- 112 (426)
T ss_pred hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCc-----------hhhhhhhheEccCccccccccc-----
Confidence 478999999987688775 3344699999999999877653 1135789999999888876643
Q ss_pred CCccEEeEec--cCCCCccCCC
Q 031454 99 PHLKELKVDL--CPELKKLPFD 118 (159)
Q Consensus 99 psLe~L~i~~--Cp~L~~lP~~ 118 (159)
+|+.|.+.. |..+..+|.+
T Consensus 113 -sLe~L~L~~n~~~~L~~LPss 133 (426)
T PRK15386 113 -SVRSLEIKGSATDSIKNVPNG 133 (426)
T ss_pred -ccceEEeCCCCCcccccCcch
Confidence 455555532 4445556554
No 6
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.24 E-value=0.0006 Score=42.34 Aligned_cols=59 Identities=29% Similarity=0.349 Sum_probs=45.5
Q ss_pred CCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCC-CcCCCCccEEeEeccC
Q 031454 42 PNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCP 110 (159)
Q Consensus 42 p~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp 110 (159)
|+|++|++++| ++..++.. ....+++|++|++. ..+++.+..+ -..+++|++|.+.+++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~--------~f~~l~~L~~L~l~-~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPD--------SFSNLPNLETLDLS-NNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTT--------TTTTGTTESEEEET-SSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHH--------HHcCCCCCCEeEcc-CCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 68899999998 78877642 24567999999998 5667888764 3568999999998874
No 7
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.16 E-value=0.001 Score=56.97 Aligned_cols=105 Identities=12% Similarity=0.149 Sum_probs=59.7
Q ss_pred ccCccccccccCCCCCCCceEEEEec-CCcCCcccccCCCCcceEEEEcCcCCccccccccccc----ccCCCCCC-Ccc
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGR-SKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG----QMQNRIPF-ARL 77 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~-~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~----~~~~~~~f-p~L 77 (159)
+-.++.+.++|. --.+|++|.|++ +.++.++. ...++|++|.|.+|.++..++..-.... .......+ ++|
T Consensus 58 ~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n~~~~L~~LPssL 134 (426)
T PRK15386 58 YIKDCDIESLPV--LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPESVRSLEIKGSATDSIKNVPNGL 134 (426)
T ss_pred EeCCCCCcccCC--CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccccccceEEeCCCCCcccccCcchH
Confidence 334567788883 334799999999 98887653 2246899999999988877664311100 00112223 345
Q ss_pred ceecccCcccccccCCCCcCC-CCccEEeEeccCCC
Q 031454 78 ECLSLYGLEKLRSIYPRALPF-PHLKELKVDLCPEL 112 (159)
Q Consensus 78 ~~L~l~~~~~L~~i~~~~~~~-psLe~L~i~~Cp~L 112 (159)
+.|.+.+........ .+..+ ++|+.|.|.+|..+
T Consensus 135 k~L~I~~~n~~~~~~-lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 135 TSLSINSYNPENQAR-IDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred hheeccccccccccc-cccccCCcccEEEecCCCcc
Confidence 655553322111110 01122 56777777777654
No 8
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.96 E-value=0.001 Score=39.17 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCceEEEEecCCcCCccc-ccCCCCcceEEEEcCcCCcccc
Q 031454 20 FSLQRVSIGRSKLRHVTW-LILAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~~-l~~Lp~Le~L~I~~C~~l~~l~ 59 (159)
++|++|++++++++.++. +..|++|+.|+++++ .+.++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 579999999988999887 899999999999998 455543
No 9
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.85 E-value=0.00094 Score=50.84 Aligned_cols=96 Identities=17% Similarity=0.253 Sum_probs=28.0
Q ss_pred cCccccccccCCC-CCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 5 YAGEEVKRILKTN-GFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 5 ~~~~~~~~~p~~~-~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
=.|...+++-..+ .+.+|+.|++++++++.+..+..+++|++|.+++- .+..+...- ...+|+|+.|.+.
T Consensus 26 L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l--------~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 26 LRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSISEGL--------DKNLPNLQELYLS 96 (175)
T ss_dssp ----------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHH--------HHH-TT--EEE-T
T ss_pred ccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccccch--------HHhCCcCCEEECc
Confidence 3455555555544 46777777777777777766667777777777554 333332100 0236777777765
Q ss_pred CcccccccCC--CCcCCCCccEEeEeccC
Q 031454 84 GLEKLRSIYP--RALPFPHLKELKVDLCP 110 (159)
Q Consensus 84 ~~~~L~~i~~--~~~~~psLe~L~i~~Cp 110 (159)
+ -++..+.. .-..+|+|+.|.+.+.|
T Consensus 97 ~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 97 N-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred C-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 3 11222211 12346777777776655
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.78 E-value=0.0034 Score=58.38 Aligned_cols=44 Identities=14% Similarity=-0.028 Sum_probs=21.3
Q ss_pred CCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 74 FARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+++|+.|++.++.--..++.....+++|+.|.+.+|.--..+|.
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 44555555544432222332234566777777776643233443
No 11
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=96.70 E-value=0.0034 Score=58.38 Aligned_cols=36 Identities=8% Similarity=0.247 Sum_probs=20.2
Q ss_pred CCCCceEEEEecCCcC-Cccc--ccCCCCcceEEEEcCc
Q 031454 18 GFFSLQRVSIGRSKLR-HVTW--LILAPNLKRISMHDCH 53 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~-~l~~--l~~Lp~Le~L~I~~C~ 53 (159)
.+++|+.|+++++++. .++. ...+++|++|+++++.
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~ 129 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc
Confidence 4677777777764443 2221 2255666666666553
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.49 E-value=0.0004 Score=53.49 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=63.8
Q ss_pred cccccCCCCCCCceEEEEecCCcCCccc-ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccc
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVTW-LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKL 88 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~~-l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L 88 (159)
+..+|+...+.+...|.+++++++.+++ +..+.||+.|.+.+- ++++++. ...++|+|+.|.+. |..|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~---------~issl~klr~lnvg-mnrl 91 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPT---------SISSLPKLRILNVG-MNRL 91 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcCh---------hhhhchhhhheecc-hhhh
Confidence 4456667778888888898888887654 677888888888665 5666653 35667778777775 7777
Q ss_pred cccCCCCcCCCCccEEeEec
Q 031454 89 RSIYPRALPFPHLKELKVDL 108 (159)
Q Consensus 89 ~~i~~~~~~~psLe~L~i~~ 108 (159)
..++.+.++||.|+-|++..
T Consensus 92 ~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 92 NILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hcCccccCCCchhhhhhccc
Confidence 77777777788887777643
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.42 E-value=0.027 Score=51.83 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccc-cccc----ccCCC-----CCCCccceecccCccccc
Q 031454 20 FSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLE-KLGG----QMQNR-----IPFARLECLSLYGLEKLR 89 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~-~~~~----~~~~~-----~~fp~L~~L~l~~~~~L~ 89 (159)
++|+.|++++++++.++. ...++|++|.++++ +++.++... .... +.... ....+|+.|++. +.+|+
T Consensus 199 ~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N-~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls-~N~L~ 275 (754)
T PRK15370 199 EQITTLILDNNELKSLPE-NLQGNIKTLYANSN-QLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLF-HNKIS 275 (754)
T ss_pred cCCcEEEecCCCCCcCCh-hhccCCCEEECCCC-ccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECc-CCccC
Confidence 467777777666666532 23356777776665 344443210 0000 00000 112356777765 33566
Q ss_pred ccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 90 SIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 90 ~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
.++.. ..++|+.|.+++| +|+++|.
T Consensus 276 ~LP~~--l~~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 276 CLPEN--LPEELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred ccccc--cCCCCcEEECCCC-ccccCcc
Confidence 55432 1246777777666 5666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.31 E-value=0.041 Score=50.83 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=22.8
Q ss_pred cccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccc
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEI 58 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l 58 (159)
+.++|... .++|+.|.+.+++++.++. .+++|++|+++++ +++.+
T Consensus 213 LtsLP~~l-~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N-~LtsL 257 (788)
T PRK15387 213 LTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSL 257 (788)
T ss_pred CCcCCcch-hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCC-ccCcc
Confidence 34445422 2456666666655555432 2456666666554 34433
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.29 E-value=0.021 Score=52.50 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=29.7
Q ss_pred cccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccc
Q 031454 8 EEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 8 ~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~ 59 (159)
..+..+|.. ...+|+.|++++++++.++. ...++|+.|++++| +++.++
T Consensus 251 N~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 251 NRITELPER-LPSALQSLDLFHNKISCLPE-NLPEELRYLSVYDN-SIRTLP 299 (754)
T ss_pred CccCcCChh-HhCCCCEEECcCCccCcccc-ccCCCCcEEECCCC-ccccCc
Confidence 334444443 23578888887777776532 22357888888776 455543
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.18 E-value=0.0087 Score=54.56 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=16.9
Q ss_pred CCCCceEEEEecCCcCC--ccc-ccCCCCcceEEEEcC
Q 031454 18 GFFSLQRVSIGRSKLRH--VTW-LILAPNLKRISMHDC 52 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~--l~~-l~~Lp~Le~L~I~~C 52 (159)
.||+|++|.|.|..+.. ... ...||||..|+|+++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCC
Confidence 36666666666511211 011 235666666666655
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=95.06 E-value=0.018 Score=43.76 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=31.1
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCccc-c-cCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTW-L-ILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~-l-~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
+....++.....+++|+.|.+++++++++.. + ..+|+|++|++++- ++.++-.. .....+|+|+.|.+.+
T Consensus 51 ~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l-------~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 51 NNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNEL-------EPLSSLPKLRVLSLEG 122 (175)
T ss_dssp TS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCC-------GGGGG-TT--EEE-TT
T ss_pred CCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHh-------HHHHcCCCcceeeccC
Confidence 4556677778889999999999999998853 4 36999999999665 34433211 1345689999999987
Q ss_pred ccc
Q 031454 85 LEK 87 (159)
Q Consensus 85 ~~~ 87 (159)
-|-
T Consensus 123 NPv 125 (175)
T PF14580_consen 123 NPV 125 (175)
T ss_dssp -GG
T ss_pred Ccc
Confidence 774
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.19 E-value=0.13 Score=47.58 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=30.9
Q ss_pred ccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccc
Q 031454 9 EVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 9 ~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~ 59 (159)
.+.++|. ..++|++|++++++++.++. ..++|+.|.+.++. +..++
T Consensus 233 ~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~-L~~Lp 278 (788)
T PRK15387 233 NLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP-LTHLP 278 (788)
T ss_pred cCCCCCC--CCCCCcEEEecCCccCcccC--cccccceeeccCCc-hhhhh
Confidence 3444553 25788999998887887653 35788888887773 55443
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.89 E-value=0.057 Score=31.57 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=7.0
Q ss_pred CCcceEEEEcCcCCccc
Q 031454 42 PNLKRISMHDCHYLEEI 58 (159)
Q Consensus 42 p~Le~L~I~~C~~l~~l 58 (159)
++|++|+++++ +++++
T Consensus 1 ~~L~~L~l~~N-~i~~l 16 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDL 16 (44)
T ss_dssp TT-SEEEETSS-S-SSH
T ss_pred CcceEEEccCC-CCccc
Confidence 35555555555 34443
No 20
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.84 E-value=0.044 Score=25.60 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=9.8
Q ss_pred CCccEEeEeccCCCCccC
Q 031454 99 PHLKELKVDLCPELKKLP 116 (159)
Q Consensus 99 psLe~L~i~~Cp~L~~lP 116 (159)
++|+.|.+.+|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467788888885 77766
No 21
>PLN03150 hypothetical protein; Provisional
Probab=93.38 E-value=0.16 Score=45.75 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=15.6
Q ss_pred ceEEEEecCCcCCc--ccccCCCCcceEEEEcC
Q 031454 22 LQRVSIGRSKLRHV--TWLILAPNLKRISMHDC 52 (159)
Q Consensus 22 L~~L~I~~~~l~~l--~~l~~Lp~Le~L~I~~C 52 (159)
+..|+++++++... ..+..+++|+.|+++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N 452 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN 452 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCC
Confidence 45555555434321 12455666666666555
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.20 E-value=0.032 Score=52.07 Aligned_cols=98 Identities=18% Similarity=0.194 Sum_probs=61.2
Q ss_pred cccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccccccc-------------ccCCCCCCCc
Q 031454 12 RILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGG-------------QMQNRIPFAR 76 (159)
Q Consensus 12 ~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~-------------~~~~~~~fp~ 76 (159)
-+|....|.+||.|+++++++..++. +..++.||+|.+++- +++.++..-.... .......+|.
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~q 453 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQ 453 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCc
Confidence 46778889999999999988887643 567888888888776 4555542111000 0123444567
Q ss_pred cceecccCcccccccCCC-CcCCCCccEEeEeccCC
Q 031454 77 LECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPE 111 (159)
Q Consensus 77 L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~ 111 (159)
|+.++++ |-+|+.+-.. ....|.|++|++.+=+.
T Consensus 454 L~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 454 LKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ceEEecc-cchhhhhhhhhhCCCcccceeeccCCcc
Confidence 7777775 5556554331 11226777777766553
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.05 E-value=0.042 Score=50.18 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=14.4
Q ss_pred CCCCceEEEEecCCcCCcccccCCCCcceEEEE
Q 031454 18 GFFSLQRVSIGRSKLRHVTWLILAPNLKRISMH 50 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~ 50 (159)
+|+||..|+|++.+++.++.++.|+||+.|.+.
T Consensus 171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMR 203 (699)
T ss_pred ccCccceeecCCCCccCcHHHhccccHHHHhcc
Confidence 344444444444334444444444444444333
No 24
>PLN03150 hypothetical protein; Provisional
Probab=92.80 E-value=0.19 Score=45.20 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCCCCceEEEEecCCcC-Ccc-cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccccc-ccCC
Q 031454 17 NGFFSLQRVSIGRSKLR-HVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLR-SIYP 93 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~-~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~-~i~~ 93 (159)
..+++|+.|+++++++. .++ .+..+++|+.|+++++.--..++. ....+++|+.|++.+.. +. .++.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~---------~l~~L~~L~~L~Ls~N~-l~g~iP~ 508 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE---------SLGQLTSLRILNLNGNS-LSGRVPA 508 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch---------HHhcCCCCCEEECcCCc-ccccCCh
Confidence 35789999999996675 333 478899999999998843333332 24568899999998864 33 3333
Q ss_pred CCc-CCCCccEEeEeccCCCCccCC
Q 031454 94 RAL-PFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 94 ~~~-~~psLe~L~i~~Cp~L~~lP~ 117 (159)
... .+.++..+.+.+.+.+...|.
T Consensus 509 ~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 509 ALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred HHhhccccCceEEecCCccccCCCC
Confidence 211 234567788887777766553
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.54 E-value=0.083 Score=49.54 Aligned_cols=96 Identities=20% Similarity=0.165 Sum_probs=53.7
Q ss_pred cccCCCCCCCceEEEEec-CC-cCCccc--ccCCCCcceEEEEcCcCCcccccccc-ccc---------cc----CCCCC
Q 031454 12 RILKTNGFFSLQRVSIGR-SK-LRHVTW--LILAPNLKRISMHDCHYLEEIVSLEK-LGG---------QM----QNRIP 73 (159)
Q Consensus 12 ~~p~~~~~~~L~~L~I~~-~~-l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~-~~~---------~~----~~~~~ 73 (159)
.++.....++|++|-+.+ .. +..++. +..+|.|..|++++|.++.++|.... ... .+ .+...
T Consensus 537 ~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 537 HIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred hccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 445555556777777777 32 555544 56788888888888888877764211 000 00 12233
Q ss_pred CCccceecccCcccccccCCCCcCCCCccEEeEe
Q 031454 74 FARLECLSLYGLEKLRSIYPRALPFPHLKELKVD 107 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~ 107 (159)
|.+|.+|++.....+.++......+++|++|.+.
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEee
Confidence 4455555555555555553333335666666553
No 26
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.83 E-value=0.018 Score=45.07 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=46.6
Q ss_pred ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCc
Q 031454 38 LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 38 l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~ 114 (159)
+..++.++.|.+.+|+.+...--.. -.+.+|+|+.|+|++|++.++--- ....+++|+.|.+.+.|....
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~-------l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLER-------LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHH-------hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 4566777888888887776542111 123678888888888888876321 134578888888888776543
No 27
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.13 E-value=0.52 Score=37.13 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=29.6
Q ss_pred CCCCCceEEEEecCCcCCccc-c-cCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 17 NGFFSLQRVSIGRSKLRHVTW-L-ILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~~-l-~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
..+++|..|.+.+++++.+.+ + ..+|+|..|.+.+- +++++... ....++|+|++|.+.+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl-------~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDL-------DPLASCPKLEYLTLLG 122 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhc-------chhccCCccceeeecC
Confidence 345556666665555665533 2 34566666666553 23333211 1234455666555543
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=90.03 E-value=0.06 Score=41.67 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=36.9
Q ss_pred CCCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
...+.+|+.|++.++.++.++ .+.++|.|+.|.+. +..+..++. +.++||.|+.|++.
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lpr---------gfgs~p~levldlt 110 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPR---------GFGSFPALEVLDLT 110 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCcc---------ccCCCchhhhhhcc
Confidence 445778888888887777764 47788888888774 333433332 34556666665553
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=0.065 Score=46.34 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=47.7
Q ss_pred CCCCceEEEEecCCcCCccc---ccCCCCcceEEEEcCc-CCcccc------cc-ccc-cc-------ccCCCCCCCccc
Q 031454 18 GFFSLQRVSIGRSKLRHVTW---LILAPNLKRISMHDCH-YLEEIV------SL-EKL-GG-------QMQNRIPFARLE 78 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~---l~~Lp~Le~L~I~~C~-~l~~l~------~~-~~~-~~-------~~~~~~~fp~L~ 78 (159)
.|++|+.|+++.+++..... -..+++|+.|.|..|. +.+++. +. ... .+ .......+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 46666666666655554321 1356777777777774 222211 10 000 00 002233456677
Q ss_pred eecccCcccccccCC--CCcCCCCccEEeEecc
Q 031454 79 CLSLYGLEKLRSIYP--RALPFPHLKELKVDLC 109 (159)
Q Consensus 79 ~L~l~~~~~L~~i~~--~~~~~psLe~L~i~~C 109 (159)
.|+|++-+.+. ... ....||.|+.|.+.+|
T Consensus 250 ~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 250 ELDLSNNNLID-FDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred hccccCCcccc-cccccccccccchhhhhcccc
Confidence 77776654432 221 2457888888888887
No 30
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.76 E-value=0.066 Score=44.58 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCceEEEEec-CCcCCccc----ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccccccc-CC
Q 031454 20 FSLQRVSIGR-SKLRHVTW----LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSI-YP 93 (159)
Q Consensus 20 ~~L~~L~I~~-~~l~~l~~----l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i-~~ 93 (159)
++|+.|+++| .+--..+. ....|+|.+|++++|..++.=.. +....|+.|++|.++.|..+--- ..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~--------~~~~kf~~L~~lSlsRCY~i~p~~~~ 357 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF--------QEFFKFNYLQHLSLSRCYDIIPETLL 357 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH--------HHHHhcchheeeehhhhcCCChHHee
Confidence 4566666666 22211111 23468888888888877664110 12355889999999888775211 01
Q ss_pred CCcCCCCccEEeEeccC
Q 031454 94 RALPFPHLKELKVDLCP 110 (159)
Q Consensus 94 ~~~~~psLe~L~i~~Cp 110 (159)
.....|+|.+|++.+|-
T Consensus 358 ~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 358 ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeccCcceEEEEecccc
Confidence 23467899999998874
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.66 E-value=0.025 Score=48.53 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=63.8
Q ss_pred CCCCCCceEEEEec-CCcCCcc---cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccccccc
Q 031454 16 TNGFFSLQRVSIGR-SKLRHVT---WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSI 91 (159)
Q Consensus 16 ~~~~~~L~~L~I~~-~~l~~l~---~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i 91 (159)
+.+=..|+.|+++| .....-+ -....||+++|.|.+|.++.+.--.. -...-++|+.|.+..|++++..
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-------la~~C~~l~~l~L~~c~~iT~~ 206 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-------LARYCRKLRHLNLHSCSSITDV 206 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-------HHHhcchhhhhhhcccchhHHH
Confidence 33447899999999 6554321 13568999999999998776532100 0123578999999999988764
Q ss_pred CC--CCcCCCCccEEeEeccCCCCc
Q 031454 92 YP--RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 92 ~~--~~~~~psLe~L~i~~Cp~L~~ 114 (159)
.- ....++.|++|.++.||...+
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhc
Confidence 21 233588999999999988766
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=87.14 E-value=0.24 Score=39.60 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=18.3
Q ss_pred CCceEEEEecCCcCCc--c----cccCC-CCcceEEEEcCc
Q 031454 20 FSLQRVSIGRSKLRHV--T----WLILA-PNLKRISMHDCH 53 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l--~----~l~~L-p~Le~L~I~~C~ 53 (159)
++|++|+++++++..- . .+..+ ++|+.|++.+|.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 4477777766334310 0 12344 666777776664
No 33
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=0.24 Score=38.82 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=37.0
Q ss_pred CCCCCCccceecccCcccccccCCC--CcCCCCccEEeEeccCCCCc
Q 031454 70 NRIPFARLECLSLYGLEKLRSIYPR--ALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 70 ~~~~fp~L~~L~l~~~~~L~~i~~~--~~~~psLe~L~i~~Cp~L~~ 114 (159)
....+++++.|.+.+|..+..|+-. ....|+|+.|.|++||+++.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 4566789999999999999888741 23789999999999998754
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=84.92 E-value=0.55 Score=39.92 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=32.6
Q ss_pred ccccccccC-CCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 7 GEEVKRILK-TNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 7 ~~~~~~~p~-~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
+-..+++.. ..++++|++|+++++.++.+..+..++.|+.|++.+.
T Consensus 104 ~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 104 DNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred ccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccC
Confidence 344555666 6677788888888777777777777777777777666
No 35
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=84.89 E-value=0.45 Score=23.38 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=14.1
Q ss_pred CccEEeEeccCCCCccCCC
Q 031454 100 HLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 100 sLe~L~i~~Cp~L~~lP~~ 118 (159)
+|++|++++| +++.+|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4788888888 78888775
No 36
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.72 E-value=0.61 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.752 Sum_probs=11.8
Q ss_pred CCCccEEeEeccCCCC
Q 031454 98 FPHLKELKVDLCPELK 113 (159)
Q Consensus 98 ~psLe~L~i~~Cp~L~ 113 (159)
+++|++|.+.+|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3677888888887764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=81.03 E-value=0.2 Score=43.42 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=26.0
Q ss_pred CCCCCCceEEEEecCCcCCccc----ccCCCCcceEEEEcCc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVTW----LILAPNLKRISMHDCH 53 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~~----l~~Lp~Le~L~I~~C~ 53 (159)
...+++++.|+++++=+..+.. +.+||+|+.|+|+.-.
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 3457888888888744444322 4689999999887653
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.88 E-value=0.49 Score=38.20 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=26.2
Q ss_pred CCCCCccceecccCcccccccCC----CCcCCCCccEEeEeccCCC
Q 031454 71 RIPFARLECLSLYGLEKLRSIYP----RALPFPHLKELKVDLCPEL 112 (159)
Q Consensus 71 ~~~fp~L~~L~l~~~~~L~~i~~----~~~~~psLe~L~i~~Cp~L 112 (159)
...+++|+.|.+.+|+... +.. ....+|+|++|.-.++..-
T Consensus 112 l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 4556778888888887776 222 1234677877777766543
No 39
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=80.32 E-value=0.12 Score=44.66 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=58.1
Q ss_pred CCCCCCceEEEEecCCcCCccc-ccCCCCcceEEEEcC-----------cCCccccccccccccc---CCCCCCCcccee
Q 031454 16 TNGFFSLQRVSIGRSKLRHVTW-LILAPNLKRISMHDC-----------HYLEEIVSLEKLGGQM---QNRIPFARLECL 80 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~~-l~~Lp~Le~L~I~~C-----------~~l~~l~~~~~~~~~~---~~~~~fp~L~~L 80 (159)
+..+.+|++|+...+-+..+++ ++.+..|+-|+++.- ..++++......- ++ .....+++|..|
T Consensus 179 ~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH-HhhHHHHhcccccceee
Confidence 3446666666655555555543 555555555554332 2222221100000 01 123457888888
Q ss_pred cccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCC
Q 031454 81 SLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDC 119 (159)
Q Consensus 81 ~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~ 119 (159)
++.+ -+|++.+.+..-+-+|++|++++= .+.++|...
T Consensus 258 DLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sL 294 (565)
T KOG0472|consen 258 DLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSL 294 (565)
T ss_pred eccc-cccccCchHHHHhhhhhhhcccCC-ccccCCccc
Confidence 8875 468888877677888999998876 477788754
No 40
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=79.90 E-value=0.36 Score=44.16 Aligned_cols=42 Identities=26% Similarity=0.299 Sum_probs=24.2
Q ss_pred CccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 75 ARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
++|+.|.+. +..|-.++.+...++-|+.|++++=|+|.-=|.
T Consensus 339 ~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 339 VKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 445555443 344444444445567777777777777754443
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=79.79 E-value=0.49 Score=37.78 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=20.6
Q ss_pred CCCceEEEEecCCcCC-c-ccccCC---CCcceEEEEcCc
Q 031454 19 FFSLQRVSIGRSKLRH-V-TWLILA---PNLKRISMHDCH 53 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~-l-~~l~~L---p~Le~L~I~~C~ 53 (159)
+++|++|+++++.+.. . ..+..+ ++|++|++++|.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 6688888887733331 1 112222 458888888875
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=79.64 E-value=4.3 Score=32.06 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=36.2
Q ss_pred CCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 19 FFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
..+...++++++.+..+.-+..+++|.+|.+.+- .+..|-+. -...+|+|+.|.+.+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nN-rIt~I~p~--------L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNN-RITRIDPD--------LDTFLPNLKTLILTN 97 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCC-cceeeccc--------hhhhccccceEEecC
Confidence 4566667777766666656677888888877554 34443221 124468888888776
No 43
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=74.86 E-value=0.76 Score=41.65 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=25.1
Q ss_pred CCCCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCcc
Q 031454 72 IPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKL 115 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~l 115 (159)
..+|+|++|.+.+ .+|++|... ...+++||.|++-+=+ +.++
T Consensus 389 ~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSI 431 (873)
T KOG4194|consen 389 NGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASI 431 (873)
T ss_pred ccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceee
Confidence 3467777777765 357777652 3346777777765442 3444
No 44
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=73.67 E-value=1.3 Score=37.26 Aligned_cols=94 Identities=26% Similarity=0.326 Sum_probs=50.5
Q ss_pred CCCceEEEEec-CCcCC--c-ccccCCCCcceEEEEcC-cCCcccccc----cc----ccc------c-c--C---C-CC
Q 031454 19 FFSLQRVSIGR-SKLRH--V-TWLILAPNLKRISMHDC-HYLEEIVSL----EK----LGG------Q-M--Q---N-RI 72 (159)
Q Consensus 19 ~~~L~~L~I~~-~~l~~--l-~~l~~Lp~Le~L~I~~C-~~l~~l~~~----~~----~~~------~-~--~---~-~~ 72 (159)
.++|+.|.+.+ ..+.. + ......++|+.|++.+| ......... .. ... . + . . ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 67888888887 77765 2 23456788888888774 211111100 00 000 0 0 0 0 11
Q ss_pred CCCccceecccCccccccc--CCCCcCCCCccEEeEeccCCC
Q 031454 73 PFARLECLSLYGLEKLRSI--YPRALPFPHLKELKVDLCPEL 112 (159)
Q Consensus 73 ~fp~L~~L~l~~~~~L~~i--~~~~~~~psLe~L~i~~Cp~L 112 (159)
..|+|+.|.+.+|+.++.- ......+++|++|.++.|..+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1467777777777764332 112335677888888777665
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=70.24 E-value=2 Score=36.08 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=45.8
Q ss_pred CCCCceEEEEec-CCcCCc--ccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccc
Q 031454 18 GFFSLQRVSIGR-SKLRHV--TWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEK 87 (159)
Q Consensus 18 ~~~~L~~L~I~~-~~l~~l--~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 87 (159)
..++|.+|++++ ..++.- ..+.+++.|++|.+++|..+- +..- .....-|+|.+|++.+|-.
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~---p~~~-----~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII---PETL-----LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC---hHHe-----eeeccCcceEEEEeccccC
Confidence 378999999999 888751 236789999999999997543 2111 1245679999999988754
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=69.67 E-value=1.2 Score=37.44 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 19 FFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
.|.++.|.++.++++.+..+..|++|..|++++-
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred ccceeEEeccccceeeehhhhhcccceEeecccc
Confidence 4566667776666666555677788888887664
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.62 E-value=0.25 Score=40.84 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=14.1
Q ss_pred CCCceEEEEecCCcCCcccccCCCCcceEEE
Q 031454 19 FFSLQRVSIGRSKLRHVTWLILAPNLKRISM 49 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I 49 (159)
++.|+.|.++=++++++.++....+|++|++
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYL 70 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYL 70 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 48
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=68.12 E-value=0.79 Score=38.56 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=20.8
Q ss_pred CCCceEEEEec-CCcCCcc---cccCCCCcceEEEEcCcCC
Q 031454 19 FFSLQRVSIGR-SKLRHVT---WLILAPNLKRISMHDCHYL 55 (159)
Q Consensus 19 ~~~L~~L~I~~-~~l~~l~---~l~~Lp~Le~L~I~~C~~l 55 (159)
.++|++|.+.+ ..++..- -...+++|++|+|++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45666666555 4443211 1235677777777777665
No 49
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=66.19 E-value=0.65 Score=42.57 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=15.1
Q ss_pred CCccceecccCcccccccCCCCcCCCCccEEeEec
Q 031454 74 FARLECLSLYGLEKLRSIYPRALPFPHLKELKVDL 108 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~ 108 (159)
+++|+.|.+++- +++.+.-+.....+|+.|.++.
T Consensus 244 l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 244 LRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred hhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc
Confidence 455666665542 2222222223445555555543
No 50
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=65.14 E-value=5.4 Score=19.90 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=7.2
Q ss_pred CCceEEEEecCCcCCc
Q 031454 20 FSLQRVSIGRSKLRHV 35 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l 35 (159)
.+|++|++.+++++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3444444444444433
No 51
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=65.14 E-value=5.4 Score=19.90 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=7.2
Q ss_pred CCceEEEEecCCcCCc
Q 031454 20 FSLQRVSIGRSKLRHV 35 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l 35 (159)
.+|++|++.+++++.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3444444444444433
No 52
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=64.75 E-value=1.5 Score=38.13 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred CCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCcccccc---ccccc----------cc--CCCCCCCcccee
Q 031454 17 NGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSL---EKLGG----------QM--QNRIPFARLECL 80 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~---~~~~~----------~~--~~~~~fp~L~~L 80 (159)
..|++|..|+++++-+-.++ .++++-.|+.|+|+.- ...+++.. -+..+ ++ ++...+.+|.+|
T Consensus 432 ~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred Hhhhcceeeecccchhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 45889999999994454543 4677888999988765 33333221 00000 11 224445677777
Q ss_pred cccCcccccccCCCCcCCCCccEEeEeccC
Q 031454 81 SLYGLEKLRSIYPRALPFPHLKELKVDLCP 110 (159)
Q Consensus 81 ~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp 110 (159)
++.+ -+++.++++-+.+.+|++|.+.+=|
T Consensus 511 DL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 511 DLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccCC-CchhhCChhhccccceeEEEecCCc
Confidence 7754 3578888888889999999988765
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=58.44 E-value=54 Score=22.10 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=29.9
Q ss_pred CceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCCcC-
Q 031454 21 SLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRALP- 97 (159)
Q Consensus 21 ~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~~~- 97 (159)
+|+.+.+.+ .++.+. .....++|+.+++.+ +++.+... .....++|+.+.+.+ ++..+......
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~--------~F~~~~~l~~i~~~~--~~~~i~~~~F~~ 79 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDN--------AFSNCKSLESITFPN--NLKSIGDNAFSN 79 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TT--------TTTT-TT-EEEEETS--TT-EE-TTTTTT
T ss_pred CCCEEEECC-CeeEeChhhcccccccccccccc--ccccccee--------eeecccccccccccc--cccccccccccc
Confidence 455555543 233321 133455666666644 24444221 112233455555543 44444433222
Q ss_pred CCCccEEeEeccCCCCccCC
Q 031454 98 FPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 98 ~psLe~L~i~~Cp~L~~lP~ 117 (159)
++.|+.+.+.. +++.++.
T Consensus 80 ~~~l~~i~~~~--~~~~i~~ 97 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGS 97 (129)
T ss_dssp -TTECEEEETT--T-BEEHT
T ss_pred cccccccccCc--cccEEch
Confidence 45566655532 3444444
No 54
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=57.22 E-value=12 Score=34.31 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=25.6
Q ss_pred CCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccc
Q 031454 19 FFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVS 60 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~ 60 (159)
++.-+.|+++++++..+.. +..+|||+.+++.+- .++.|+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~ 119 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPR 119 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhccc
Confidence 4445567777776766533 356777777777554 4555554
No 55
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=55.77 E-value=7.3 Score=20.26 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=13.1
Q ss_pred CCceEEEEecCCcCCccc
Q 031454 20 FSLQRVSIGRSKLRHVTW 37 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~~ 37 (159)
++|+.|.+++++++.++.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467888888877776654
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=53.91 E-value=7.5 Score=31.48 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=21.3
Q ss_pred CCceEEEEecCCcCCc---ccccCCCCcceEEEEcCcC
Q 031454 20 FSLQRVSIGRSKLRHV---TWLILAPNLKRISMHDCHY 54 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l---~~l~~Lp~Le~L~I~~C~~ 54 (159)
++|++|++++++++.+ .++..++||..|.+.+|+.
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 6777777766555543 2345566666666666653
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=53.72 E-value=9.6 Score=33.21 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=52.2
Q ss_pred CCCceEEEEec-CCcCCcc-c--ccCCCCcceEEEEcCcCCcccccc---------ccc-ccc---c------CCCCCCC
Q 031454 19 FFSLQRVSIGR-SKLRHVT-W--LILAPNLKRISMHDCHYLEEIVSL---------EKL-GGQ---M------QNRIPFA 75 (159)
Q Consensus 19 ~~~L~~L~I~~-~~l~~l~-~--l~~Lp~Le~L~I~~C~~l~~l~~~---------~~~-~~~---~------~~~~~fp 75 (159)
...|+.|..++ ..++... | .+.-++|..|.++.|.++...--. ... .+. . +....-|
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 56677777777 6665431 2 245677888888777754432100 000 000 0 1123347
Q ss_pred ccceecccCccccccc-----CCCCcCCCCccEEeEeccCCCC
Q 031454 76 RLECLSLYGLEKLRSI-----YPRALPFPHLKELKVDLCPELK 113 (159)
Q Consensus 76 ~L~~L~l~~~~~L~~i-----~~~~~~~psLe~L~i~~Cp~L~ 113 (159)
+|+.|.++.|...+.- ......+..|+.+.+.+||...
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 7888888777665543 1223456667777777777653
No 58
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=52.63 E-value=7.9 Score=18.93 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=6.7
Q ss_pred CCcceEEEEcCc
Q 031454 42 PNLKRISMHDCH 53 (159)
Q Consensus 42 p~Le~L~I~~C~ 53 (159)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 567777777664
No 59
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=51.87 E-value=7.7 Score=33.66 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=30.4
Q ss_pred CCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 19 FFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
+++|++|++++++++.+- |+..+..++.|++.+- +++.+-. .....+..|+.|.+++
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~--------~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSS--------GMFQGLSGLKTLSLYD 331 (498)
T ss_pred cccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHH--------HhhhccccceeeeecC
Confidence 566677777766666552 3455566666655433 3333211 0123356677777765
No 60
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=48.20 E-value=13 Score=19.19 Aligned_cols=17 Identities=12% Similarity=0.532 Sum_probs=12.1
Q ss_pred CCCceEEEEecCCcCCc
Q 031454 19 FFSLQRVSIGRSKLRHV 35 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l 35 (159)
+.+|+.|++++++++.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 45788888888777653
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=46.33 E-value=12 Score=31.82 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=31.0
Q ss_pred CCCCCCceEEEEecCCcCCccc-ccCCCCcceEEEEcC
Q 031454 16 TNGFFSLQRVSIGRSKLRHVTW-LILAPNLKRISMHDC 52 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~~-l~~Lp~Le~L~I~~C 52 (159)
...+.+|+.|.+.+++++.+.. +..+++|++|.|++-
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N 128 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN 128 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccc
Confidence 4678889999998888888877 788999999988665
No 62
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.38 E-value=6.4 Score=35.67 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=36.5
Q ss_pred cccccccCCCCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCccc
Q 031454 8 EEVKRILKTNGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEI 58 (159)
Q Consensus 8 ~~~~~~p~~~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l 58 (159)
--...+|..-++--|+.|-+++++++.++ .++.++.|..|+++.|+ +..+
T Consensus 131 NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~sl 181 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSL 181 (722)
T ss_pred chhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhc
Confidence 33445666777778888888888888875 47788888888888774 3433
No 63
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=40.41 E-value=5.3 Score=33.67 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcC
Q 031454 18 GFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDC 52 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C 52 (159)
.+++|+.|+++++.+..+. |-..|-|.++|.+..-
T Consensus 327 ~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 327 ELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 4889999999997776653 4456777787776543
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=40.22 E-value=13 Score=30.84 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=26.8
Q ss_pred ccccCCCCCC--CceEEEEecCCcCCc-ccccCCCCcceEEEEcCc
Q 031454 11 KRILKTNGFF--SLQRVSIGRSKLRHV-TWLILAPNLKRISMHDCH 53 (159)
Q Consensus 11 ~~~p~~~~~~--~L~~L~I~~~~l~~l-~~l~~Lp~Le~L~I~~C~ 53 (159)
.+++....+. +|+.|+++++++..+ .++..+++|+.|.+.+++
T Consensus 129 ~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 129 TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3455544443 677777777666665 356677777777776663
No 65
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=36.21 E-value=8.7 Score=36.62 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=39.2
Q ss_pred CCCCCceEEEEecCCcCCccc-----------------------ccCCCCcceEEEEcCcCCcccccccccccccCCCCC
Q 031454 17 NGFFSLQRVSIGRSKLRHVTW-----------------------LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIP 73 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~~-----------------------l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~ 73 (159)
..+..|++|.++|++++.++. +.+++.|+.++| .|.++.++.-. ....
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl-S~N~L~~~~l~--------~~~p 474 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL-SCNNLSEVTLP--------EALP 474 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec-ccchhhhhhhh--------hhCC
Confidence 357777888888877877642 234556666666 34455544321 1222
Q ss_pred CCccceecccCcccc
Q 031454 74 FARLECLSLYGLEKL 88 (159)
Q Consensus 74 fp~L~~L~l~~~~~L 88 (159)
-|+||+|++.+-+.+
T Consensus 475 ~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRL 489 (1081)
T ss_pred CcccceeeccCCccc
Confidence 389999999987764
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.60 E-value=21 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=21.9
Q ss_pred CCccceecccCcccccccC--CCCcCCCCccEEeEeccC
Q 031454 74 FARLECLSLYGLEKLRSIY--PRALPFPHLKELKVDLCP 110 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~--~~~~~~psLe~L~i~~Cp 110 (159)
-|.+++|+...|+...... .-...||++..+.+.+||
T Consensus 172 s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 172 STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 3566666666666544322 223357777777777775
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=28.24 E-value=22 Score=29.51 Aligned_cols=52 Identities=10% Similarity=0.259 Sum_probs=37.5
Q ss_pred cccccccc-CCCCCCCceEEEEecCCcCCccccc-CCCCcceEEEEcCcCCcccc
Q 031454 7 GEEVKRIL-KTNGFFSLQRVSIGRSKLRHVTWLI-LAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 7 ~~~~~~~p-~~~~~~~L~~L~I~~~~l~~l~~l~-~Lp~Le~L~I~~C~~l~~l~ 59 (159)
+...+..| ....+++|+.|.++++.+..++... .+++|+.|++++.. +..++
T Consensus 149 ~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~ 202 (394)
T COG4886 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLP 202 (394)
T ss_pred ccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCc
Confidence 34445554 5677899999999997788777665 88888888888773 44443
Done!