Query 031454
Match_columns 159
No_of_seqs 106 out of 1100
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 23:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 98.7 5.1E-08 1.8E-12 78.5 8.3 120 19-140 182-317 (328)
2 3rfs_A Internalin B, repeat mo 98.4 2E-06 7E-11 67.0 10.2 125 3-130 46-187 (272)
3 4ezg_A Putative uncharacterize 98.4 1.3E-06 4.4E-11 65.0 8.6 47 7-53 53-99 (197)
4 3rfs_A Internalin B, repeat mo 98.3 3.7E-06 1.3E-10 65.5 10.3 121 7-130 72-211 (272)
5 4fcg_A Uncharacterized protein 98.3 2.9E-06 9.9E-11 68.2 9.6 121 8-130 137-283 (328)
6 2xwt_C Thyrotropin receptor; s 98.3 4.3E-06 1.5E-10 63.7 9.6 38 21-58 32-71 (239)
7 4ezg_A Putative uncharacterize 98.3 2.3E-06 7.7E-11 63.6 7.0 99 7-116 75-175 (197)
8 2o6s_A Variable lymphocyte rec 98.2 1.4E-05 4.9E-10 59.5 11.3 56 72-129 97-153 (208)
9 2ell_A Acidic leucine-rich nuc 98.2 1.4E-06 4.9E-11 62.9 5.4 95 12-117 40-137 (168)
10 3e6j_A Variable lymphocyte rec 98.2 1.4E-05 4.7E-10 61.0 11.1 116 10-129 31-164 (229)
11 2xwt_C Thyrotropin receptor; s 98.2 1.3E-05 4.5E-10 60.9 10.1 112 17-130 77-211 (239)
12 2o6r_A Variable lymphocyte rec 98.2 2.5E-05 8.7E-10 56.7 11.2 111 7-129 16-129 (177)
13 4fmz_A Internalin; leucine ric 98.2 5E-06 1.7E-10 66.3 7.6 106 3-110 49-166 (347)
14 3m19_A Variable lymphocyte rec 98.1 3E-05 1E-09 59.5 10.9 55 73-129 129-184 (251)
15 1p9a_G Platelet glycoprotein I 98.1 2.6E-05 9.1E-10 61.5 10.8 107 10-119 67-191 (290)
16 1ozn_A Reticulon 4 receptor; N 98.1 2.4E-05 8.2E-10 60.9 10.2 122 4-129 17-158 (285)
17 3m19_A Variable lymphocyte rec 98.1 3.9E-05 1.3E-09 58.9 11.2 91 17-118 56-149 (251)
18 2o6q_A Variable lymphocyte rec 98.1 4.3E-05 1.5E-09 59.2 11.3 120 7-129 70-210 (270)
19 2ell_A Acidic leucine-rich nuc 98.1 9.6E-06 3.3E-10 58.4 6.9 101 8-118 59-165 (168)
20 1ozn_A Reticulon 4 receptor; N 98.1 3.4E-05 1.2E-09 60.0 10.5 122 7-130 41-183 (285)
21 2je0_A Acidic leucine-rich nuc 98.0 4E-06 1.4E-10 59.3 4.4 95 12-117 33-130 (149)
22 2o6s_A Variable lymphocyte rec 98.0 6.8E-05 2.3E-09 55.7 11.2 110 9-130 18-130 (208)
23 2z80_A TOLL-like receptor 2, v 98.0 2.1E-05 7.3E-10 63.1 8.8 33 20-52 52-86 (353)
24 1a9n_A U2A', U2A'; complex (nu 98.0 6.1E-06 2.1E-10 60.2 4.8 98 9-117 30-130 (176)
25 1h6u_A Internalin H; cell adhe 98.0 1.6E-05 5.6E-10 63.1 7.6 110 3-116 46-167 (308)
26 2o6q_A Variable lymphocyte rec 98.0 9E-05 3.1E-09 57.4 11.5 54 74-129 132-186 (270)
27 3zyj_A Leucine-rich repeat-con 98.0 4.2E-05 1.4E-09 63.4 10.1 35 18-52 110-146 (440)
28 2wfh_A SLIT homolog 2 protein 98.0 9.8E-05 3.3E-09 54.9 11.2 111 7-129 19-131 (193)
29 2v9t_B SLIT homolog 2 protein 98.0 6.9E-05 2.3E-09 56.7 10.5 120 6-129 19-157 (220)
30 2v9t_B SLIT homolog 2 protein 98.0 6.8E-05 2.3E-09 56.7 10.5 101 8-110 42-163 (220)
31 4fmz_A Internalin; leucine ric 98.0 5.7E-06 1.9E-10 66.0 4.5 100 5-117 228-328 (347)
32 3e6j_A Variable lymphocyte rec 98.0 6.8E-05 2.3E-09 57.0 10.3 94 21-118 20-130 (229)
33 3e4g_A ATP synthase subunit S, 98.0 7.7E-06 2.6E-10 61.2 4.8 95 12-114 52-154 (176)
34 4g8a_A TOLL-like receptor 4; l 97.9 3.4E-05 1.2E-09 65.5 9.1 47 11-59 44-92 (635)
35 1h6u_A Internalin H; cell adhe 97.9 2.1E-05 7.3E-10 62.4 7.4 45 8-52 73-117 (308)
36 1h6t_A Internalin B; cell adhe 97.9 3E-05 1E-09 61.1 8.2 46 7-52 77-122 (291)
37 2o6r_A Variable lymphocyte rec 97.9 5.4E-05 1.8E-09 55.0 9.0 95 6-110 36-135 (177)
38 1h6t_A Internalin B; cell adhe 97.9 3.1E-05 1.1E-09 61.1 8.1 54 4-58 52-105 (291)
39 3zyi_A Leucine-rich repeat-con 97.9 5E-05 1.7E-09 63.1 9.6 42 74-116 170-212 (452)
40 3o6n_A APL1; leucine-rich repe 97.9 2.7E-05 9.4E-10 63.2 7.9 43 72-116 114-157 (390)
41 2v70_A SLIT-2, SLIT homolog 2 97.9 7.9E-05 2.7E-09 56.4 9.5 56 72-129 102-158 (220)
42 3oja_B Anopheles plasmodium-re 97.9 3.2E-05 1.1E-09 66.7 8.2 88 18-116 73-163 (597)
43 2r9u_A Variable lymphocyte rec 97.9 7E-05 2.4E-09 54.8 8.8 94 6-110 20-116 (174)
44 3zyj_A Leucine-rich repeat-con 97.9 6.6E-05 2.3E-09 62.1 9.6 118 9-129 147-284 (440)
45 1w8a_A SLIT protein; signaling 97.9 0.00018 6.1E-09 53.2 10.9 111 7-129 17-131 (192)
46 1m9s_A Internalin B; cell inva 97.9 4.3E-05 1.5E-09 66.7 8.6 49 4-52 49-97 (605)
47 1m9s_A Internalin B; cell inva 97.9 3.6E-05 1.2E-09 67.2 7.9 43 10-52 99-141 (605)
48 1p9a_G Platelet glycoprotein I 97.8 9.3E-05 3.2E-09 58.4 9.5 124 3-130 15-154 (290)
49 2ft3_A Biglycan; proteoglycan, 97.8 0.00011 3.6E-09 58.5 9.6 97 6-116 41-139 (332)
50 1o6v_A Internalin A; bacterial 97.8 4.2E-05 1.4E-09 63.8 7.3 51 3-53 51-101 (466)
51 4ay9_X Follicle-stimulating ho 97.8 0.00022 7.4E-09 57.4 11.3 108 9-118 20-147 (350)
52 1xeu_A Internalin C; cellular 97.8 6.4E-05 2.2E-09 58.5 7.8 106 6-115 49-165 (263)
53 3zyi_A Leucine-rich repeat-con 97.8 0.0001 3.6E-09 61.2 9.3 118 9-129 158-295 (452)
54 3g39_A Variable lymphocyte rec 97.8 0.00013 4.5E-09 53.0 8.8 93 6-109 17-112 (170)
55 3o6n_A APL1; leucine-rich repe 97.8 5.9E-05 2E-09 61.2 7.5 97 19-118 225-336 (390)
56 3v47_A TOLL-like receptor 5B a 97.8 0.00011 3.7E-09 60.5 9.2 100 19-129 298-400 (455)
57 3bz5_A Internalin-J, INLJ; leu 97.8 9.6E-05 3.3E-09 62.1 9.0 109 3-117 47-166 (457)
58 3a79_B TLR6, VLRB.59, TOLL-lik 97.8 0.00013 4.5E-09 62.1 9.8 100 3-116 36-137 (562)
59 2ifg_A High affinity nerve gro 97.7 8.8E-05 3E-09 59.3 8.0 91 9-109 20-113 (347)
60 3vq2_A TLR4, TOLL-like recepto 97.7 0.00017 5.7E-09 61.6 10.1 103 4-109 17-138 (606)
61 2z62_A TOLL-like receptor 4, v 97.7 0.00022 7.6E-09 55.1 9.9 101 10-114 19-138 (276)
62 2xot_A Amphoterin-induced prot 97.7 0.00017 5.8E-09 58.3 9.4 35 18-52 62-98 (361)
63 1o6v_A Internalin A; bacterial 97.7 9.2E-05 3.2E-09 61.7 7.7 41 12-52 257-297 (466)
64 2id5_A Lingo-1, leucine rich r 97.7 0.00018 6E-09 59.8 9.2 98 17-116 125-240 (477)
65 1dce_A Protein (RAB geranylger 97.7 6.7E-05 2.3E-09 65.0 6.6 96 9-117 452-550 (567)
66 2je0_A Acidic leucine-rich nuc 97.6 2.5E-05 8.4E-10 55.1 2.6 92 7-107 51-148 (149)
67 3vq2_A TLR4, TOLL-like recepto 97.6 0.00019 6.5E-09 61.3 8.6 43 11-54 298-340 (606)
68 1a9n_A U2A', U2A'; complex (nu 97.6 7.9E-05 2.7E-09 54.1 5.4 92 13-117 12-105 (176)
69 1w8a_A SLIT protein; signaling 97.6 0.00025 8.4E-09 52.4 8.1 95 6-110 37-137 (192)
70 4g8a_A TOLL-like receptor 4; l 97.6 0.00016 5.3E-09 61.4 7.9 52 8-60 62-117 (635)
71 2z66_A Variable lymphocyte rec 97.6 0.00015 5.2E-09 56.8 7.3 42 74-117 174-216 (306)
72 2z63_A TOLL-like receptor 4, v 97.6 0.0003 1E-08 59.3 9.3 57 71-129 466-523 (570)
73 2z80_A TOLL-like receptor 2, v 97.6 0.00017 5.7E-09 57.8 7.3 35 18-52 98-134 (353)
74 1xku_A Decorin; proteoglycan, 97.6 0.00031 1.1E-08 55.6 8.7 72 4-85 37-110 (330)
75 2z7x_B TOLL-like receptor 1, v 97.6 0.00024 8.1E-09 59.6 8.4 94 3-109 5-100 (520)
76 3g06_A SSPH2 (leucine-rich rep 97.6 0.0003 1E-08 61.6 9.4 106 3-117 45-158 (622)
77 1xku_A Decorin; proteoglycan, 97.6 0.00028 9.4E-09 55.9 8.4 46 71-118 236-281 (330)
78 2z81_A CD282 antigen, TOLL-lik 97.6 0.00025 8.5E-09 59.7 8.6 34 19-52 25-60 (549)
79 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 0.00042 1.4E-08 59.0 10.0 112 16-129 373-502 (562)
80 4b8c_D Glucose-repressible alc 97.6 0.00011 3.7E-09 65.4 6.5 100 17-129 221-321 (727)
81 2z7x_B TOLL-like receptor 1, v 97.6 0.00037 1.3E-08 58.4 9.4 112 16-129 344-473 (520)
82 1xeu_A Internalin C; cellular 97.5 0.00024 8.3E-09 55.1 7.6 100 7-110 72-183 (263)
83 2id5_A Lingo-1, leucine rich r 97.5 0.00061 2.1E-08 56.6 10.4 33 20-52 32-66 (477)
84 2z63_A TOLL-like receptor 4, v 97.5 0.00052 1.8E-08 57.8 10.0 107 4-114 13-138 (570)
85 2v70_A SLIT-2, SLIT homolog 2 97.5 0.00047 1.6E-08 52.0 8.7 92 17-110 54-164 (220)
86 3oja_B Anopheles plasmodium-re 97.5 0.00021 7.3E-09 61.5 7.5 97 19-118 231-342 (597)
87 2xot_A Amphoterin-induced prot 97.5 0.0007 2.4E-08 54.7 10.2 108 7-118 27-154 (361)
88 3o53_A Protein LRIM1, AGAP0063 97.5 0.00012 4.1E-09 58.1 5.4 99 17-129 141-242 (317)
89 3bz5_A Internalin-J, INLJ; leu 97.5 0.00049 1.7E-08 57.7 9.4 103 7-116 73-186 (457)
90 2z62_A TOLL-like receptor 4, v 97.5 0.00052 1.8E-08 52.9 8.7 108 7-117 37-166 (276)
91 2ft3_A Biglycan; proteoglycan, 97.5 0.00021 7.3E-09 56.7 6.5 88 20-118 193-282 (332)
92 3g06_A SSPH2 (leucine-rich rep 97.5 0.00051 1.7E-08 60.2 9.4 98 3-109 66-171 (622)
93 3j0a_A TOLL-like receptor 5; m 97.5 0.00087 3E-08 60.1 11.0 122 4-129 10-153 (844)
94 2z66_A Variable lymphocyte rec 97.5 0.00057 1.9E-08 53.4 8.7 100 16-117 122-240 (306)
95 2wfh_A SLIT homolog 2 protein 97.4 0.00059 2E-08 50.6 8.1 93 7-109 40-136 (193)
96 4b8c_D Glucose-repressible alc 97.4 9.8E-05 3.3E-09 65.6 4.4 93 7-110 233-327 (727)
97 1ziw_A TOLL-like receptor 3; i 97.4 0.00051 1.8E-08 59.5 8.6 123 4-130 10-151 (680)
98 1ziw_A TOLL-like receptor 3; i 97.4 0.0006 2E-08 59.0 9.0 111 4-117 31-162 (680)
99 3v47_A TOLL-like receptor 5B a 97.4 0.00048 1.6E-08 56.6 8.0 105 7-115 19-144 (455)
100 3t6q_A CD180 antigen; protein- 97.4 0.001 3.4E-08 56.8 10.2 111 17-130 275-406 (606)
101 1dce_A Protein (RAB geranylger 97.4 0.0003 1E-08 60.9 6.9 96 21-130 442-539 (567)
102 1jl5_A Outer protein YOPM; leu 97.4 0.00065 2.2E-08 56.9 8.8 91 20-116 131-231 (454)
103 3t6q_A CD180 antigen; protein- 97.4 0.0011 3.7E-08 56.5 10.3 122 7-130 287-431 (606)
104 2ifg_A High affinity nerve gro 97.4 0.00081 2.8E-08 53.6 8.6 87 23-119 11-99 (347)
105 4eco_A Uncharacterized protein 97.3 0.00019 6.5E-09 62.5 5.1 51 9-59 194-266 (636)
106 3o53_A Protein LRIM1, AGAP0063 97.3 0.00049 1.7E-08 54.5 6.9 101 18-130 118-220 (317)
107 2ast_B S-phase kinase-associat 97.3 3.3E-05 1.1E-09 61.1 0.1 38 16-53 89-129 (336)
108 2z81_A CD282 antigen, TOLL-lik 97.3 0.0009 3.1E-08 56.3 8.9 97 16-114 46-162 (549)
109 2r9u_A Variable lymphocyte rec 97.3 0.0022 7.6E-08 46.7 9.5 96 22-129 14-110 (174)
110 4ecn_A Leucine-rich repeat pro 97.2 0.00068 2.3E-08 61.7 7.9 47 72-119 773-825 (876)
111 1jl5_A Outer protein YOPM; leu 97.2 0.0013 4.3E-08 55.2 8.8 44 7-52 140-183 (454)
112 4ay9_X Follicle-stimulating ho 97.2 0.00067 2.3E-08 54.5 6.9 54 72-130 199-252 (350)
113 3g39_A Variable lymphocyte rec 97.2 0.003 1E-07 45.7 9.3 97 21-129 10-107 (170)
114 3cvr_A Invasion plasmid antige 97.2 0.0022 7.6E-08 55.6 9.9 101 6-117 67-177 (571)
115 1ogq_A PGIP-2, polygalacturona 97.2 0.00071 2.4E-08 53.6 6.3 38 72-109 122-159 (313)
116 3oja_A Leucine-rich immune mol 97.1 0.00049 1.7E-08 58.1 5.3 39 74-114 119-158 (487)
117 3rgz_A Protein brassinosteroid 97.1 0.0013 4.3E-08 58.4 8.1 38 16-53 196-234 (768)
118 3oja_A Leucine-rich immune mol 97.1 0.00054 1.8E-08 57.9 5.1 89 17-118 141-232 (487)
119 2ast_B S-phase kinase-associat 97.0 0.00019 6.4E-09 56.7 1.7 39 18-56 140-182 (336)
120 3e4g_A ATP synthase subunit S, 97.0 0.00023 7.9E-09 53.1 1.9 72 12-91 77-155 (176)
121 4ecn_A Leucine-rich repeat pro 96.9 0.0019 6.5E-08 58.8 7.7 42 71-116 802-843 (876)
122 4eco_A Uncharacterized protein 96.9 0.0019 6.6E-08 56.1 7.4 87 21-118 489-584 (636)
123 3cvr_A Invasion plasmid antige 96.8 0.0043 1.5E-07 53.8 8.6 101 7-117 89-197 (571)
124 1ogq_A PGIP-2, polygalacturona 96.8 0.00049 1.7E-08 54.5 2.2 85 22-117 199-286 (313)
125 3rgz_A Protein brassinosteroid 96.8 0.0014 4.9E-08 58.1 5.3 101 17-117 439-556 (768)
126 4glp_A Monocyte differentiatio 96.7 0.0012 3.9E-08 52.1 4.1 48 9-57 156-211 (310)
127 1ds9_A Outer arm dynein; leuci 96.7 3.4E-05 1.2E-09 57.2 -4.6 43 16-59 44-86 (198)
128 1ds9_A Outer arm dynein; leuci 96.6 4.6E-05 1.6E-09 56.5 -4.8 89 10-110 60-151 (198)
129 1wwl_A Monocyte differentiatio 96.6 0.0037 1.3E-07 49.2 5.9 100 17-130 198-302 (312)
130 3j0a_A TOLL-like receptor 5; m 96.5 0.012 4.1E-07 52.7 9.5 97 16-115 44-163 (844)
131 4glp_A Monocyte differentiatio 96.5 0.0034 1.2E-07 49.3 5.2 41 73-115 195-239 (310)
132 1wwl_A Monocyte differentiatio 96.4 0.0055 1.9E-07 48.2 5.7 16 98-114 227-242 (312)
133 3sb4_A Hypothetical leucine ri 95.9 0.034 1.2E-06 43.9 8.2 98 19-129 225-326 (329)
134 2ra8_A Uncharacterized protein 95.8 0.015 5.2E-07 47.5 6.0 37 17-53 136-183 (362)
135 2p1m_B Transport inhibitor res 95.7 0.0043 1.5E-07 52.4 2.3 39 18-56 103-144 (594)
136 2p1m_B Transport inhibitor res 95.3 0.0027 9.2E-08 53.7 -0.1 36 18-53 64-116 (594)
137 2ca6_A RAN GTPase-activating p 94.2 0.011 3.9E-07 47.5 0.8 12 98-109 302-313 (386)
138 2ra8_A Uncharacterized protein 94.0 0.025 8.7E-07 46.2 2.6 90 18-108 191-288 (362)
139 3ogk_B Coronatine-insensitive 94.0 0.021 7.2E-07 48.2 2.2 15 39-53 290-304 (592)
140 3ogk_B Coronatine-insensitive 93.4 0.011 3.9E-07 49.9 -0.5 94 19-114 402-527 (592)
141 2ca6_A RAN GTPase-activating p 93.1 0.031 1.1E-06 45.0 1.6 12 98-109 273-284 (386)
142 3rw6_A Nuclear RNA export fact 93.0 0.087 3E-06 41.4 4.0 60 18-86 168-231 (267)
143 1z7x_W Ribonuclease inhibitor; 92.5 0.019 6.5E-07 46.9 -0.5 11 19-29 169-179 (461)
144 3sb4_A Hypothetical leucine ri 91.7 0.99 3.4E-05 35.3 8.8 31 98-130 272-303 (329)
145 1z7x_W Ribonuclease inhibitor; 91.1 0.031 1.1E-06 45.6 -0.7 36 74-110 369-409 (461)
146 3goz_A Leucine-rich repeat-con 90.7 0.091 3.1E-06 42.0 1.8 34 19-52 21-61 (362)
147 4fdw_A Leucine rich hypothetic 87.0 3.5 0.00012 33.6 8.9 12 39-50 177-188 (401)
148 3goz_A Leucine-rich repeat-con 86.8 0.11 3.7E-06 41.5 -0.4 34 20-53 167-207 (362)
149 3rfe_A Platelet glycoprotein I 81.9 1.5 5.2E-05 30.1 3.9 40 12-52 24-65 (130)
150 3rw6_A Nuclear RNA export fact 75.6 1.4 4.9E-05 34.3 2.3 64 18-83 194-259 (267)
151 3un9_A NLR family member X1; l 72.7 0.4 1.4E-05 38.9 -1.6 35 19-53 125-166 (372)
152 4fdw_A Leucine rich hypothetic 54.1 84 0.0029 25.2 10.7 11 40-50 269-279 (401)
153 4gt6_A Cell surface protein; l 47.3 1E+02 0.0035 24.2 8.7 52 75-130 311-363 (394)
154 4fs7_A Uncharacterized protein 35.5 1.3E+02 0.0045 23.5 7.4 12 39-50 294-305 (394)
155 4h09_A Hypothetical leucine ri 26.0 1.7E+02 0.0059 22.5 6.5 30 19-49 239-270 (379)
156 4fs7_A Uncharacterized protein 21.9 2.8E+02 0.0097 21.5 9.8 11 19-29 229-239 (394)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.68 E-value=5.1e-08 Score=78.52 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=79.5
Q ss_pred CCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCccccccc-cccc-------------cc-CCCCCCCccceecc
Q 031454 19 FFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLE-KLGG-------------QM-QNRIPFARLECLSL 82 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~-~~~~-------------~~-~~~~~fp~L~~L~l 82 (159)
+++|++|++++++++.++ .+..+++|++|++++|. +..++..- .... .. .....+++|+.|++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 777888888775565553 36677777888777774 33333210 0000 00 23456789999999
Q ss_pred cCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEechhhhhhhcc
Q 031454 83 YGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIKGQEWWWNNLQ 140 (159)
Q Consensus 83 ~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~~~~e~~~~l~ 140 (159)
.+|..+..++.....+++|+.|.+.+|+.+..+|..... +.++.++.........+.
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLD 317 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC--
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHh
Confidence 999988888776678899999999999999989876433 366777765554444433
No 2
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.40 E-value=2e-06 Score=67.00 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=81.9
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc---
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM--- 68 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~--- 68 (159)
++..+....+++....+++|++|++++++++.+..+..+++|++|++++| .+..++... ... . ..
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 124 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSL 124 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCcc
Confidence 34455666777777788999999999866777767788899999999887 344443211 000 0 00
Q ss_pred --CCCCCCCccceecccCcccccccCCCC-cCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 69 --QNRIPFARLECLSLYGLEKLRSIYPRA-LPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 69 --~~~~~fp~L~~L~l~~~~~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
.....+++|++|++.++ +++.+.... ..+++|+.|.+.+| ++..+|......+.+|....
T Consensus 125 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 125 PDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEE
Confidence 11345678888888877 566665433 45788888888888 57777765433345555554
No 3
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.40 E-value=1.3e-06 Score=64.98 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=30.7
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCc
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCH 53 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~ 53 (159)
+..+..+|....+++|++|++++++++.+..+..+++|++|+++++.
T Consensus 53 ~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 53 NINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD 99 (197)
T ss_dssp SSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTT
T ss_pred CCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCc
Confidence 33444555556677777777777656666666677777777777763
No 4
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.34 E-value=3.7e-06 Score=65.53 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=77.2
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc-----
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM----- 68 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~----- 68 (159)
+..+..++....+++|++|++++++++.+.. +..+++|++|++++|. +..++... ... . ..
T Consensus 72 ~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 72 GNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCH
Confidence 4445555666677888888888766666543 5667788888887774 33333211 000 0 00
Q ss_pred CCCCCCCccceecccCcccccccCCCC-cCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 69 QNRIPFARLECLSLYGLEKLRSIYPRA-LPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 69 ~~~~~fp~L~~L~l~~~~~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
.....+++|+.|++.++ +++.+.... ..+++|+.|.+.+| ++..+|......+.+|..+.
T Consensus 151 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 151 GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEE
Confidence 11355799999999988 576665543 46899999999998 58888765433345565553
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.32 E-value=2.9e-06 Score=68.17 Aligned_cols=121 Identities=21% Similarity=0.213 Sum_probs=84.0
Q ss_pred cccccccC-CCCCCCceEEEEec-CCcCCccc-c---------cCCCCcceEEEEcCcCCcccccccc-cc--c------
Q 031454 8 EEVKRILK-TNGFFSLQRVSIGR-SKLRHVTW-L---------ILAPNLKRISMHDCHYLEEIVSLEK-LG--G------ 66 (159)
Q Consensus 8 ~~~~~~p~-~~~~~~L~~L~I~~-~~l~~l~~-l---------~~Lp~Le~L~I~~C~~l~~l~~~~~-~~--~------ 66 (159)
..+..+|. ...+++|++|++++ +.+..++. + ..+++|++|+++++ .+..++..-. .. .
T Consensus 137 n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEES
T ss_pred CccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccC
Confidence 34445664 45689999999999 77766543 2 24999999999998 4555543211 00 0
Q ss_pred -cc----CCCCCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 67 -QM----QNRIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 67 -~~----~~~~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
.. .....+++|+.|++.++.....++.....+++|+.|.+.+|..+..+|.... .+.+|..+.
T Consensus 216 N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~ 283 (328)
T 4fcg_A 216 SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLD 283 (328)
T ss_dssp SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEE
T ss_pred CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEe
Confidence 01 1244578999999999888888877667789999999999998888887542 235555554
No 6
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.30 E-value=4.3e-06 Score=63.68 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=18.3
Q ss_pred CceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccc
Q 031454 21 SLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEI 58 (159)
Q Consensus 21 ~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l 58 (159)
+|++|++++++++.++. +..+++|++|+++++..+..+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i 71 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee
Confidence 55555555544444322 334555555555555434443
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.25 E-value=2.3e-06 Score=63.63 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=74.5
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCC--cccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRH--VTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~--l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
+.....++....+++|++|++++++++. +..+..+++|++|++++|.--...+. ....+++|+.|++.+
T Consensus 75 ~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~---------~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 75 NIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT---------KINTLPKVNSIDLSY 145 (197)
T ss_dssp SCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH---------HHTTCSSCCEEECCS
T ss_pred CCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH---------HHhhCCCCCEEEccC
Confidence 3345556667779999999999977775 45678899999999999843222221 234589999999999
Q ss_pred cccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 85 LEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 85 ~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
+..+..+. ....+++|+.|.+.+| ++..++
T Consensus 146 n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 146 NGAITDIM-PLKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp CTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT
T ss_pred CCCccccH-hhcCCCCCCEEECCCC-CCcChH
Confidence 88777765 3456899999999998 477765
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.24 E-value=1.4e-05 Score=59.45 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=33.0
Q ss_pred CCCCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 72 IPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
..+++|+.|++.+. +++.+... ...+++|+.|.+.++ ++..+|........+|..+
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEE
Confidence 44677777777665 45555443 235677888888776 4666665433333444444
No 9
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.23 E-value=1.4e-06 Score=62.88 Aligned_cols=95 Identities=24% Similarity=0.265 Sum_probs=52.0
Q ss_pred cccCC-CCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccc
Q 031454 12 RILKT-NGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRS 90 (159)
Q Consensus 12 ~~p~~-~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~ 90 (159)
.+|.. ..+++|++|++++++++.+..+..+++|++|++++|. +...++. ....+++|+.|++.++ +++.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~ 109 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENR-IFGGLDM--------LAEKLPNLTHLNLSGN-KLKD 109 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCC-CCSCCCH--------HHHHCTTCCEEECBSS-SCCS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCc-CchHHHH--------HHhhCCCCCEEeccCC-ccCc
Confidence 44443 4566666666666446555445566666666666663 2221110 0122567777777666 4555
Q ss_pred cC--CCCcCCCCccEEeEeccCCCCccCC
Q 031454 91 IY--PRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 91 i~--~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+. .....+++|+.|.+.++ .+..+|.
T Consensus 110 ~~~~~~l~~l~~L~~L~l~~N-~l~~~~~ 137 (168)
T 2ell_A 110 ISTLEPLKKLECLKSLDLFNC-EVTNLND 137 (168)
T ss_dssp SGGGGGGSSCSCCCEEECCSS-GGGTSTT
T ss_pred chhHHHHhcCCCCCEEEeeCC-cCcchHH
Confidence 43 22335667777777766 3555544
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.23 E-value=1.4e-05 Score=60.95 Aligned_cols=116 Identities=16% Similarity=0.069 Sum_probs=68.1
Q ss_pred cccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--ccc--c----------cc--CCC
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--KLG--G----------QM--QNR 71 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~----------~~--~~~ 71 (159)
+.++|.. ..++|++|+++++++..+.. +..+++|++|+++++. +..++... ... . .. ...
T Consensus 31 l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 31 HASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp CSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHh
Confidence 3444542 23777777777755665532 5567777777777663 34433211 000 0 00 113
Q ss_pred CCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 72 IPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
..+++|+.|.+.+. +++.++.....+++|+.|.+.++ ++..+|......+.+|..+
T Consensus 109 ~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 109 DRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 45688888888765 46666655567888999999887 6888876433334455544
No 11
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.18 E-value=1.3e-05 Score=60.94 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=60.5
Q ss_pred CCCCCceEEEEec-CCcCCccc--ccCCCCcceEEEEcCcCCcccccccc---cc-----------c--cc--CCCCCCC
Q 031454 17 NGFFSLQRVSIGR-SKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEK---LG-----------G--QM--QNRIPFA 75 (159)
Q Consensus 17 ~~~~~L~~L~I~~-~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~---~~-----------~--~~--~~~~~fp 75 (159)
..+++|++|++++ ++++.++. +..+++|++|+++++. +..++.... .. . .. .....++
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchh
Confidence 3577888888887 77776643 4567888888887763 333321000 00 0 00 1123345
Q ss_pred ccc-eecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCC-CCceEEe
Q 031454 76 RLE-CLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGL-ERKLIIK 130 (159)
Q Consensus 76 ~L~-~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~-~~l~~v~ 130 (159)
+|+ .|++.+. +++.+.......++|+.|.+.+++.++.+|...-... ..|..+.
T Consensus 156 ~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 156 NETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp SSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred cceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 566 6666543 3444544333335677777777766666665433333 4454444
No 12
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.18 E-value=2.5e-05 Score=56.71 Aligned_cols=111 Identities=20% Similarity=0.175 Sum_probs=77.0
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
+....++|. ..+++|++|++++++++.++. +..+++|++|+++++ .+..++.. ....+++|+.|++.+
T Consensus 16 ~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--------~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 16 SKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDG--------VFDKLTKLTILYLHE 85 (177)
T ss_dssp SSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT--------TTTTCTTCCEEECCS
T ss_pred CCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChh--------HccCCCccCEEECCC
Confidence 444556663 346899999999966877643 577899999999988 45555431 235578899999987
Q ss_pred cccccccCCCC-cCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 85 LEKLRSIYPRA-LPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 85 ~~~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
. +++.+.... ..+++|+.|.+.++ ++.++|........+|..+
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 129 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKI 129 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred C-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEE
Confidence 5 466665533 46789999999888 6888877543333455544
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.16 E-value=5e-06 Score=66.32 Aligned_cols=106 Identities=17% Similarity=0.220 Sum_probs=68.7
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc------------ccCC
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG------------QMQN 70 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~------------~~~~ 70 (159)
++-.+.....++....+++|++|++++++++.++.+..+++|++|++++| .+..+........ ....
T Consensus 49 L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 49 LVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECTTSCCCCCGG
T ss_pred EEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchHHcCCCcCCEEECcCCcccCchh
Confidence 34456666777777778888888888877777766788888888888887 3444422111000 0112
Q ss_pred CCCCCccceecccCcccccccCCCCcCCCCccEEeEeccC
Q 031454 71 RIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCP 110 (159)
Q Consensus 71 ~~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp 110 (159)
...+++|+.|++.++..+..+.. ...+++|++|.+.+|.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence 34567777777777776665543 4457788888887773
No 14
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.11 E-value=3e-05 Score=59.51 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 73 PFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 73 ~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
.+++|+.|++.+. +++.+... ...+++|+.|.+.++ ++.++|........+|..+
T Consensus 129 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 129 RLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEE
Confidence 3466666666554 45555442 234677777777777 5666665433333455544
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.11 E-value=2.6e-05 Score=61.52 Aligned_cols=107 Identities=17% Similarity=0.166 Sum_probs=59.3
Q ss_pred cccccCCCCCCCceEEEEecCCcCCccc-ccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc-----CCCC
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVTW-LILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM-----QNRI 72 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~~-l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~-----~~~~ 72 (159)
+.+++....+++|++|++++++++.++. +..+++|++|+++++ .+..++... ... . .. ....
T Consensus 67 l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 67 LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 3344444566666666666655555533 455667777776665 233332110 000 0 00 1123
Q ss_pred CCCccceecccCcccccccCCCC-cCCCCccEEeEeccCCCCccCCCC
Q 031454 73 PFARLECLSLYGLEKLRSIYPRA-LPFPHLKELKVDLCPELKKLPFDC 119 (159)
Q Consensus 73 ~fp~L~~L~l~~~~~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP~~~ 119 (159)
.+++|+.|++.+. +++++..+. ..+++|+.|.+.++ +++++|...
T Consensus 146 ~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~ 191 (290)
T 1p9a_G 146 PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGF 191 (290)
T ss_dssp TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhh
Confidence 4567777777665 456665533 34788888888877 577777654
No 16
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.09 E-value=2.4e-05 Score=60.90 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=61.1
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccc--cc--c-------c-c-
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEK--LG--G-------Q-M- 68 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~--~~--~-------~-~- 68 (159)
|..+..+..+|. +..++|++|++++++++.+.. +..+++|++|+++++ .+..+....- .. . . .
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 17 SCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp ECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred EcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 333444555554 235678888887766665542 566777777777766 3333321100 00 0 0 0
Q ss_pred ----CCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 69 ----QNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 69 ----~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
.....+++|++|++.++. ++.+.. ....+++|++|.+.++ ++..+|........+|..+
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred ccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEE
Confidence 112334566666665543 333322 2234667777777766 4556554322223444444
No 17
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.09 E-value=3.9e-05 Score=58.88 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=50.9
Q ss_pred CCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCC
Q 031454 17 NGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPR 94 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~ 94 (159)
..+++|++|++++++++.+.. +..+++|++|+++++. +..++.. ....+++|++|++.+. +++.+...
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~ 125 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLG--------VFDHLTQLDKLYLGGN-QLKSLPSG 125 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChh--------HhcccCCCCEEEcCCC-cCCCcChh
Confidence 456777777777765665533 4566777777776653 3333211 1234566666666654 45554443
Q ss_pred C-cCCCCccEEeEeccCCCCccCCC
Q 031454 95 A-LPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 95 ~-~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
. ..+++|+.|.+.++ ++..+|..
T Consensus 126 ~~~~l~~L~~L~Ls~N-~l~~~~~~ 149 (251)
T 3m19_A 126 VFDRLTKLKELRLNTN-QLQSIPAG 149 (251)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred HhccCCcccEEECcCC-cCCccCHH
Confidence 2 34566666666665 45555543
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.08 E-value=4.3e-05 Score=59.21 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=71.3
Q ss_pred ccccccccCC--CCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--ccc--c----------cc
Q 031454 7 GEEVKRILKT--NGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--KLG--G----------QM 68 (159)
Q Consensus 7 ~~~~~~~p~~--~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~----------~~ 68 (159)
+..+..+|.. ..+++|++|++++++++.++. +..+++|++|+++++. +..++... ... . ..
T Consensus 70 ~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 70 DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 3344455543 357888888888866766542 4567888888887763 33332210 000 0 00
Q ss_pred --CCCCCCCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 69 --QNRIPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 69 --~~~~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
.....+++|+.|.+.++ .++.+... ...+++|+.|.+.++ +++.+|.........|..+
T Consensus 149 ~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEE
Confidence 11345688888888766 45555543 335789999999988 6888876543333455544
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.06 E-value=9.6e-06 Score=58.43 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=73.2
Q ss_pred cccccccCCCCCCCceEEEEecCCcCC-cccc-cCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCc
Q 031454 8 EEVKRILKTNGFFSLQRVSIGRSKLRH-VTWL-ILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGL 85 (159)
Q Consensus 8 ~~~~~~p~~~~~~~L~~L~I~~~~l~~-l~~l-~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~ 85 (159)
..+.++.....+++|++|+++++++.. ++.. ..+++|++|++++| .+..++... ....+++|+.|++.++
T Consensus 59 n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 59 VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLE-------PLKKLECLKSLDLFNC 130 (168)
T ss_dssp SCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGG-------GGSSCSCCCEEECCSS
T ss_pred CCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHH-------HHhcCCCCCEEEeeCC
Confidence 334555566779999999999977876 4433 45999999999999 466543211 2456899999999987
Q ss_pred ccccccCC----CCcCCCCccEEeEeccCCCCccCCC
Q 031454 86 EKLRSIYP----RALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 86 ~~L~~i~~----~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
.+..+.. ....+++|+.|.+.+|. +..+|..
T Consensus 131 -~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 131 -EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp -GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred -cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 4555544 23468999999999994 6677654
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.06 E-value=3.4e-05 Score=60.04 Aligned_cols=122 Identities=15% Similarity=0.120 Sum_probs=80.0
Q ss_pred ccccccccC--CCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc---
Q 031454 7 GEEVKRILK--TNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM--- 68 (159)
Q Consensus 7 ~~~~~~~p~--~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~--- 68 (159)
+..+..++. -..+++|++|++++++++.+. .+..+++|++|+++++..+..+.... ... . ..
T Consensus 41 ~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 120 (285)
T 1ozn_A 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120 (285)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE
Confidence 444455553 456889999999886676653 36778999999999887666553211 000 0 01
Q ss_pred --CCCCCCCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 69 --QNRIPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 69 --~~~~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
.....+++|++|.+.+. .++.+... ...+++|+.|.+.++ ++..+|.........|..+.
T Consensus 121 ~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEE
Confidence 12445789999999876 35555543 346899999999998 68888875434445566554
No 21
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.04 E-value=4e-06 Score=59.29 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=51.3
Q ss_pred cccCC-CCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccc
Q 031454 12 RILKT-NGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRS 90 (159)
Q Consensus 12 ~~p~~-~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~ 90 (159)
.+|.. ..+++|++|++++++++.+..+..+++|++|+++++. +...++. ....+++|+.|++.++. ++.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~--------~~~~l~~L~~L~ls~N~-i~~ 102 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEV--------LAEKCPNLTHLNLSGNK-IKD 102 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCTHH--------HHHHCTTCCEEECTTSC-CCS
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchHHH--------HhhhCCCCCEEECCCCc-CCC
Confidence 34443 4566666666666555555445566666666666663 2221110 01235667777776653 444
Q ss_pred cC--CCCcCCCCccEEeEeccCCCCccCC
Q 031454 91 IY--PRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 91 i~--~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+. .....+++|+.|.+.+| .+..+|.
T Consensus 103 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 103 LSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp HHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred hHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 32 22345667777777776 3555543
No 22
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.03 E-value=6.8e-05 Score=55.72 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=78.4
Q ss_pred ccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcc
Q 031454 9 EVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLE 86 (159)
Q Consensus 9 ~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 86 (159)
....+|. ...++|++|++++++++.+.. +..+++|++|+++++ ++..++.. ....+++|++|++.+.
T Consensus 18 ~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--------~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 18 GRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNG--------VFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT--------TTTTCTTCCEEECCSS-
T ss_pred CccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChh--------hcCCCCCcCEEECCCC-
Confidence 3344553 346799999999977877654 578999999999987 45555431 2355899999999876
Q ss_pred cccccCCCC-cCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 87 KLRSIYPRA-LPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 87 ~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
+++.+.... ..+++|+.|.+.++ ++..+|........+|..+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEE
Confidence 466665543 46899999999988 68888765433345666554
No 23
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.02 E-value=2.1e-05 Score=63.11 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=16.6
Q ss_pred CCceEEEEecCCcCCccc--ccCCCCcceEEEEcC
Q 031454 20 FSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDC 52 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C 52 (159)
++|++|++++++++.++. +..+++|++|+++++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n 86 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 86 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC
Confidence 455555555544444332 344555555555544
No 24
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.00 E-value=6.1e-06 Score=60.17 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=50.4
Q ss_pred ccccccCCCCCC-CceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccc
Q 031454 9 EVKRILKTNGFF-SLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEK 87 (159)
Q Consensus 9 ~~~~~p~~~~~~-~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 87 (159)
.+..++....+. +|++|++++++++.+..+..+++|++|+++++. +..++.. ....+++|+.|++.+. .
T Consensus 30 ~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~--------~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 30 KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR-ICRIGEG--------LDQALPDLTELILTNN-S 99 (176)
T ss_dssp CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC-CCEECSC--------HHHHCTTCCEEECCSC-C
T ss_pred CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCc-ccccCcc--------hhhcCCCCCEEECCCC-c
Confidence 333444333333 566666655445544445555566666655552 3333210 0134677777777665 3
Q ss_pred ccccCC--CCcCCCCccEEeEeccCCCCccCC
Q 031454 88 LRSIYP--RALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 88 L~~i~~--~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+..+.. ....+++|+.|.+.+++ +..+|.
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 130 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNP-VTNKKH 130 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred CCcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence 344433 23356777777777764 445554
No 25
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.99 E-value=1.6e-05 Score=63.13 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=68.6
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc------------ccCC
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG------------QMQN 70 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~------------~~~~ 70 (159)
++-.+.....++....+++|++|++++++++.+..+..+++|++|+++++. +..+........ ....
T Consensus 46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~ 124 (308)
T 1h6u_A 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTP 124 (308)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGG
T ss_pred EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCCCCchh
Confidence 344456666777777788888888888777777667888888888888874 444321111000 0112
Q ss_pred CCCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 71 RIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 71 ~~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
...+++|+.|.+.++ .++.+.. ...+++|+.|.+.+| ++..++
T Consensus 125 l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~ 167 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLT 167 (308)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCCh
Confidence 344567777777665 3343332 345788888888887 465554
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=97.98 E-value=9e-05 Score=57.38 Aligned_cols=54 Identities=26% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 74 FARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
+++|++|++.+. .++.+... ...+++|+.|.+.++ ++..+|........+|..+
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEE
Confidence 344444444443 23333322 234566677776666 4555554332223444444
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.98 E-value=4.2e-05 Score=63.35 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=18.0
Q ss_pred CCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcC
Q 031454 18 GFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDC 52 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C 52 (159)
.+++|++|++++++++.++. +..+++|++|+++++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 146 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN 146 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence 35556666665544554432 344555555555544
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.98 E-value=9.8e-05 Score=54.87 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=78.6
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCc
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGL 85 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~ 85 (159)
+..+..+|.. .+++|++|++++++++.++ .+..+++|+.|+++++. +..+... ....+++|+.|++.+.
T Consensus 19 ~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~--------~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 19 NKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQ--------SFSNMTQLLTLILSYN 88 (193)
T ss_dssp TSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTT--------TTTTCTTCCEEECCSS
T ss_pred CCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHh--------HccCCCCCCEEECCCC
Confidence 4445666653 4689999999997787774 46789999999998873 5554421 2456789999999876
Q ss_pred ccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 86 EKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 86 ~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
. ++.+... ...+++|+.|.+.+. ++..+|......+..|..+
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEE
T ss_pred c-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEE
Confidence 4 6776653 346799999999987 5888887543333444444
No 29
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.98 E-value=6.9e-05 Score=56.72 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=67.7
Q ss_pred CccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--ccc--c----------cc-
Q 031454 6 AGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G----------QM- 68 (159)
Q Consensus 6 ~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~----------~~- 68 (159)
.+..+..+|... .++|+.|++++++++.++ .+..+++|+.|+++++. +..+.+.. ... . ..
T Consensus 19 ~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 19 RGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp TTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 344455555533 367777777776666554 25567777777777763 33332110 000 0 00
Q ss_pred -CCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 69 -QNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 69 -~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
.....+++|+.|++.+. +++.+.. ....+++|+.|.+.++ ++..++........++..+
T Consensus 97 ~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred HhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEE
Confidence 11244678888888765 3555543 2345788999999888 5777776433333444433
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.98 E-value=6.8e-05 Score=56.74 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=62.6
Q ss_pred cccccccC--CCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc----
Q 031454 8 EEVKRILK--TNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM---- 68 (159)
Q Consensus 8 ~~~~~~p~--~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~---- 68 (159)
..+.+++. -..+++|++|+++++++..+. .+..+++|++|+++++ .+..++... ... . ..
T Consensus 42 n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeC
Confidence 33444443 345788888888887777652 3677888888888877 344443311 000 0 00
Q ss_pred -CCCCCCCccceecccCcccccccCCC-CcCCCCccEEeEeccC
Q 031454 69 -QNRIPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCP 110 (159)
Q Consensus 69 -~~~~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp 110 (159)
.....+++|+.|++.+. +++.+... ...+++|+.|.+.+-|
T Consensus 121 ~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 121 VDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCC
Confidence 22445689999999875 36666543 3457888888876654
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=97.97 E-value=5.7e-06 Score=66.00 Aligned_cols=100 Identities=12% Similarity=0.112 Sum_probs=74.0
Q ss_pred cCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 5 YAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 5 ~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
-.+......+....+++|++|++++++++.+..+..+++|++|++++| .+..+. ....+++|+.|++.+
T Consensus 228 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~----------~~~~l~~L~~L~L~~ 296 (347)
T 4fmz_A 228 IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN-QISDIS----------VLNNLSQLNSLFLNN 296 (347)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG----------GGGGCTTCSEEECCS
T ss_pred ccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC-ccCCCh----------hhcCCCCCCEEECcC
Confidence 345556666667789999999999977888777889999999999998 455442 134578899999998
Q ss_pred cccccccCC-CCcCCCCccEEeEeccCCCCccCC
Q 031454 85 LEKLRSIYP-RALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 85 ~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+. +..... ....+++|+.|.+.+|+ +..++.
T Consensus 297 n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 297 NQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp SC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred Cc-CCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 84 333322 23457899999999996 666544
No 32
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.96 E-value=6.8e-05 Score=57.02 Aligned_cols=94 Identities=21% Similarity=0.150 Sum_probs=52.6
Q ss_pred CceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccc--ccc--c-------c---c--CCCCCCCccceecccC
Q 031454 21 SLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------Q---M--QNRIPFARLECLSLYG 84 (159)
Q Consensus 21 ~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~---~--~~~~~fp~L~~L~l~~ 84 (159)
.-+.++.++.+++.++. ...++|++|+++++. +..+.... ... . . . .....+++|+.|++.+
T Consensus 20 s~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCC-CCCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45567776666766542 445888888888874 44332210 000 0 0 0 1123456677777766
Q ss_pred cccccccCCCC-cCCCCccEEeEeccCCCCccCCC
Q 031454 85 LEKLRSIYPRA-LPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 85 ~~~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
. +++.+.... ..+++|+.|.+.++ ++..+|..
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~ 130 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG 130 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT
T ss_pred C-cCCccChhHhCcchhhCeEeccCC-cccccCcc
Confidence 5 555555432 35677777777766 46666654
No 33
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=7.7e-06 Score=61.21 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=66.8
Q ss_pred cccCCC-CCCCceEEEEecCCcCCc--ccccCCCCcceEEEEcCcCCcccccccccccccCCCCC----CCccceecccC
Q 031454 12 RILKTN-GFFSLQRVSIGRSKLRHV--TWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIP----FARLECLSLYG 84 (159)
Q Consensus 12 ~~p~~~-~~~~L~~L~I~~~~l~~l--~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~----fp~L~~L~l~~ 84 (159)
.+|... .-.+|++|++++..++.. ..+..+++|++|.+++|..+..-.-. .... -++|+.|+|++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~--------~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE--------RLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH--------HHHTCHHHHHHCCEEEEES
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH--------HHHhcccccCCCCEEEcCC
Confidence 455532 335799999999337652 33678999999999999877653110 1111 25799999999
Q ss_pred cccccccCC-CCcCCCCccEEeEeccCCCCc
Q 031454 85 LEKLRSIYP-RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 85 ~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~ 114 (159)
|++++.-.- .-..+++|+.|.+++|++++.
T Consensus 124 C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 124 CGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 998875211 123589999999999998864
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.94 E-value=3.4e-05 Score=65.52 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=33.0
Q ss_pred ccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccc
Q 031454 11 KRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 11 ~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~ 59 (159)
.++|+.- -+++++|++++++++.++ .+..+++|++|++++| +++.++
T Consensus 44 ~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~ 92 (635)
T 4g8a_A 44 YKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIE 92 (635)
T ss_dssp SSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEEC
T ss_pred CccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcC
Confidence 3455432 257889999887788775 3677888999988888 455554
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=97.94 E-value=2.1e-05 Score=62.42 Aligned_cols=45 Identities=7% Similarity=0.238 Sum_probs=24.6
Q ss_pred cccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 8 EEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 8 ~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
..+..++....+++|++|++++++++.++.+..+++|++|++++|
T Consensus 73 n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp SCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred CcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC
Confidence 334444444556666666666644555544555555555555555
No 36
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.94 E-value=3e-05 Score=61.14 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=28.7
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
+..+..++....+++|++|++++++++.++.+..+++|++|++++|
T Consensus 77 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 77 GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred CCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC
Confidence 3344444445566777777777755666655666667777766665
No 37
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.94 E-value=5.4e-05 Score=54.95 Aligned_cols=95 Identities=13% Similarity=0.181 Sum_probs=70.9
Q ss_pred CccccccccCC--CCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceec
Q 031454 6 AGEEVKRILKT--NGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLS 81 (159)
Q Consensus 6 ~~~~~~~~p~~--~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~ 81 (159)
.+..+.+++.. ..+++|++|++++++++.++. +..+++|++|+++++ .+..++.. ....+++|+.|+
T Consensus 36 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~--------~~~~l~~L~~L~ 106 (177)
T 2o6r_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNG--------VFDKLTQLKELA 106 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------TTTTCTTCCEEE
T ss_pred CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHH--------HhhCCcccCEEE
Confidence 34455566652 568999999999977887754 578999999999987 35554431 235589999999
Q ss_pred ccCcccccccCCCC-cCCCCccEEeEeccC
Q 031454 82 LYGLEKLRSIYPRA-LPFPHLKELKVDLCP 110 (159)
Q Consensus 82 l~~~~~L~~i~~~~-~~~psLe~L~i~~Cp 110 (159)
+.+. +++.+.... ..+++|+.|.+.+.+
T Consensus 107 l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 9987 677776643 458999999998875
No 38
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=97.93 E-value=3.1e-05 Score=61.10 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=42.5
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccc
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEI 58 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l 58 (159)
+-.+..+.+++....+++|++|++++++++.+..+..+++|++|.++++. +..+
T Consensus 52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~ 105 (291)
T 1h6t_A 52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK-VKDL 105 (291)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCG
T ss_pred EccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCc-CCCC
Confidence 33456667777778899999999999778887778889999999998874 4443
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.92 E-value=5e-05 Score=63.10 Aligned_cols=42 Identities=31% Similarity=0.407 Sum_probs=20.2
Q ss_pred CCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccC
Q 031454 74 FARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP 116 (159)
+++|+.|++.++..++.+... ...+++|+.|.+.+| ++..+|
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~ 212 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP 212 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc
Confidence 445555555555555444432 223455555555555 344444
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.92 E-value=2.7e-05 Score=63.22 Aligned_cols=43 Identities=21% Similarity=0.179 Sum_probs=21.0
Q ss_pred CCCCccceecccCcccccccCCCC-cCCCCccEEeEeccCCCCccC
Q 031454 72 IPFARLECLSLYGLEKLRSIYPRA-LPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~~-~~~psLe~L~i~~Cp~L~~lP 116 (159)
..+++|++|++.++ .++.++... ..+++|++|.+.++ ++..++
T Consensus 114 ~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~ 157 (390)
T 3o6n_A 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE 157 (390)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCC
T ss_pred cCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccC
Confidence 34555666666554 344444322 33555566655555 244443
No 41
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.90 E-value=7.9e-05 Score=56.37 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=35.4
Q ss_pred CCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 72 IPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
..+++|++|.+.+.. ++.+.. ....+++|+.|.+.++ ++..++......+.+|..+
T Consensus 102 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 102 KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEE
T ss_pred cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEE
Confidence 456788888887653 555533 3446789999999887 5777744333333444443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.89 E-value=3.2e-05 Score=66.68 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=41.8
Q ss_pred CCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCC
Q 031454 18 GFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRA 95 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~ 95 (159)
.+++|++|++++++++.+. .+..+++|++|++++|. +..+++. ....+++|++|++.++ .++.++...
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~~~l~~L~~L~L~~n-~l~~l~~~~ 142 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH--------VFQNVPLLTVLVLERN-DLSSLPRGI 142 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHH--------HHcCCCCCCEEEeeCC-CCCCCCHHH
Confidence 3555666666554454432 24455666666665553 3333221 1233455555555544 344443322
Q ss_pred -cCCCCccEEeEeccCCCCccC
Q 031454 96 -LPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 96 -~~~psLe~L~i~~Cp~L~~lP 116 (159)
..+++|+.|.+.+| ++..++
T Consensus 143 ~~~l~~L~~L~Ls~N-~l~~~~ 163 (597)
T 3oja_B 143 FHNTPKLTTLSMSNN-NLERIE 163 (597)
T ss_dssp TTTCTTCCEEECCSS-CCCBCC
T ss_pred hccCCCCCEEEeeCC-cCCCCC
Confidence 23455555555555 344443
No 43
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.88 E-value=7e-05 Score=54.85 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=67.1
Q ss_pred CccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 6 AGEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 6 ~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
.+..+.++|... .++|++|++++++++.+.+ +..+++|++|++++. ++..++.. ....+++|+.|++.
T Consensus 20 ~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~--------~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 20 QNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTG--------VFDKLTQLTQLDLN 89 (174)
T ss_dssp CSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--------TTTTCTTCCEEECC
T ss_pred CCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChh--------HhCCcchhhEEECC
Confidence 344455666643 4899999999977877643 678899999999887 56665431 12457899999998
Q ss_pred CcccccccCCC-CcCCCCccEEeEeccC
Q 031454 84 GLEKLRSIYPR-ALPFPHLKELKVDLCP 110 (159)
Q Consensus 84 ~~~~L~~i~~~-~~~~psLe~L~i~~Cp 110 (159)
+. +++.+... ...+++|+.|.+.+.+
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 74 56776654 4457889999887764
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.88 E-value=6.6e-05 Score=62.15 Aligned_cols=118 Identities=22% Similarity=0.229 Sum_probs=69.1
Q ss_pred ccccccC--CCCCCCceEEEEec-CCcCCccc--ccCCCCcceEEEEcCcCCccccccccccc---------c-----cC
Q 031454 9 EVKRILK--TNGFFSLQRVSIGR-SKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGG---------Q-----MQ 69 (159)
Q Consensus 9 ~~~~~p~--~~~~~~L~~L~I~~-~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~---------~-----~~ 69 (159)
.+..++. -..+++|++|++++ +.+..+.. +..+++|++|++++| ++..++....... . ..
T Consensus 147 ~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 147 PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTT
T ss_pred cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChh
Confidence 3444443 34577888888887 77766543 566778888887777 3444432111000 0 02
Q ss_pred CCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 70 NRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 70 ~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
....+++|+.|.+.+. +++.+.. ....+++|+.|++.++ ++..+|.........|..+
T Consensus 226 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI 284 (440)
T ss_dssp TTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred hhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence 2445677888877765 3455443 2345789999999888 6888876543333444433
No 45
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.87 E-value=0.00018 Score=53.19 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=74.1
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCccc---ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTW---LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~---l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
+..+..+|.. .+.+|++|++++++++.+.. +..+++|++|+++++ .+..+.+. ....+++|+.|++.
T Consensus 17 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--------~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 17 GRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPN--------AFEGASHIQELQLG 86 (192)
T ss_dssp TSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTT--------TTTTCTTCCEEECC
T ss_pred CCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHh--------HcCCcccCCEEECC
Confidence 3445566653 34599999999977877653 678999999999888 45554321 24557889999888
Q ss_pred CcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 84 GLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 84 ~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
+. +++.+... ...+++|+.|.+.+. ++..++......+..|..+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEE
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEE
Confidence 75 46666543 345788999998887 5766644333333444444
No 46
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.86 E-value=4.3e-05 Score=66.73 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=35.5
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
+-.+..+.+++....+++|+.|+++++++..++.+..+++|+.|.+++|
T Consensus 49 ~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 49 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDEN 97 (605)
T ss_dssp BCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS
T ss_pred ECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCC
Confidence 3345556677777778888888888766777666777777787777776
No 47
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=97.86 E-value=3.6e-05 Score=67.23 Aligned_cols=43 Identities=14% Similarity=0.308 Sum_probs=20.8
Q ss_pred cccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
+..++....+++|+.|+++++++..++.+..+++|+.|.+++|
T Consensus 99 l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 99 IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 141 (605)
T ss_dssp CCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS
T ss_pred CCCChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC
Confidence 3334444445555555555444444444445555555555544
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.85 E-value=9.3e-05 Score=58.35 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=73.2
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccccccc------------cc
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGG------------QM 68 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~------------~~ 68 (159)
++-.+..+.++|... .++|+.|++++++++.+. .+..+++|++|+++++. +..+........ ..
T Consensus 15 l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 15 VNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCSSC
T ss_pred EECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCcCCcC
Confidence 344455556666543 478888888886676653 35677888888887763 444332110000 00
Q ss_pred -CCCCCCCccceecccCcccccccCCC-CcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 69 -QNRIPFARLECLSLYGLEKLRSIYPR-ALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 69 -~~~~~fp~L~~L~l~~~~~L~~i~~~-~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
.....+++|+.|.+.+. +++.+..+ ...+++|++|.+.++ ++.++|...-....+|....
T Consensus 93 ~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred chhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEE
Confidence 12344677777777764 45555432 345788888888887 67777765433345555554
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.82 E-value=0.00011 Score=58.51 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=53.4
Q ss_pred CccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 6 AGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 6 ~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
.+....++|... +++|+.|++++++++.+. .+..+++|++|+++++. +..+... ....+++|++|++.
T Consensus 41 ~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 41 SDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEK--------AFSPLRKLQKLYIS 110 (332)
T ss_dssp CSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGG--------GSTTCTTCCEEECC
T ss_pred CCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHh--------HhhCcCCCCEEECC
Confidence 344455565533 578888888886676653 36778888888888874 4444221 12335556666655
Q ss_pred CcccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 84 GLEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 84 ~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
+. .++.++.. .+++|++|.+.++ ++..+|
T Consensus 111 ~n-~l~~l~~~--~~~~L~~L~l~~n-~i~~~~ 139 (332)
T 2ft3_A 111 KN-HLVEIPPN--LPSSLVELRIHDN-RIRKVP 139 (332)
T ss_dssp SS-CCCSCCSS--CCTTCCEEECCSS-CCCCCC
T ss_pred CC-cCCccCcc--ccccCCEEECCCC-ccCccC
Confidence 43 23333321 1245555555544 244443
No 50
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.81 E-value=4.2e-05 Score=63.80 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=38.8
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCc
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCH 53 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~ 53 (159)
++..+.....+|....+++|++|++++++++.++.+..+++|++|++++|.
T Consensus 51 L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~ 101 (466)
T 1o6v_A 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ 101 (466)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred EecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCc
Confidence 445566677777777788888888888667777667788888888888773
No 51
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.81 E-value=0.00022 Score=57.40 Aligned_cols=108 Identities=13% Similarity=0.078 Sum_probs=64.0
Q ss_pred ccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--cc---cc-------c---c--C
Q 031454 9 EVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--KL---GG-------Q---M--Q 69 (159)
Q Consensus 9 ~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~~---~~-------~---~--~ 69 (159)
.+.++|+.. .++|++|++++++++.++. +..+++|++|+++++.-++.+.... .. .+ . . .
T Consensus 20 ~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 20 KVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 345666543 5799999999988988764 5789999999999997666554211 00 00 0 0 1
Q ss_pred CCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCC
Q 031454 70 NRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 70 ~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
....+++|++|.+.+. .++.+.. .......+..+.+.++.++..+|..
T Consensus 99 ~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~ 147 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147 (350)
T ss_dssp SBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred hhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccccc
Confidence 1233456666665543 2333332 1223344556666666666666654
No 52
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.80 E-value=6.4e-05 Score=58.46 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=61.6
Q ss_pred CccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccc--cc-----c----ccCCCCCC
Q 031454 6 AGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEK--LG-----G----QMQNRIPF 74 (159)
Q Consensus 6 ~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~--~~-----~----~~~~~~~f 74 (159)
.+..+.+++....+++|++|++++++++.++.+..+++|++|+++++. +..+..... .. . .......+
T Consensus 49 ~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~~l~~l 127 (263)
T 1xeu_A 49 DNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTDSLIHL 127 (263)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSGGGTTC
T ss_pred cCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCChhhcCc
Confidence 344556666666778888888877667776667778888888887773 343322110 00 0 01123345
Q ss_pred CccceecccCcccccccCCCCcCCCCccEEeEeccCCCCcc
Q 031454 75 ARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKL 115 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~l 115 (159)
++|+.|++.+.. ++.+. ....+++|+.|.+.++ ++..+
T Consensus 128 ~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N-~i~~~ 165 (263)
T 1xeu_A 128 KNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGN-EITNT 165 (263)
T ss_dssp TTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTS-CCCBC
T ss_pred ccccEEECCCCc-CCCCh-HHccCCCCCEEECCCC-cCcch
Confidence 666666666542 44442 2345677888888776 35544
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.79 E-value=0.0001 Score=61.16 Aligned_cols=118 Identities=22% Similarity=0.239 Sum_probs=69.2
Q ss_pred ccccccC--CCCCCCceEEEEec-CCcCCccc--ccCCCCcceEEEEcCcCCccccccccccc---------c-----cC
Q 031454 9 EVKRILK--TNGFFSLQRVSIGR-SKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGG---------Q-----MQ 69 (159)
Q Consensus 9 ~~~~~p~--~~~~~~L~~L~I~~-~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~---------~-----~~ 69 (159)
.+.++|. -..+++|++|++++ +.+..++. +..+++|++|+++++. +..++....... . ..
T Consensus 158 ~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGG
T ss_pred CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcccCcc
Confidence 3444443 34577888888887 77766543 5567777888777763 333322111000 0 01
Q ss_pred CCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 70 NRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 70 ~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
....+++|+.|.+.++. ++.+.. ....+++|+.|.+.++ ++.++|........+|..+
T Consensus 237 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp GGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEE
T ss_pred cccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEE
Confidence 23456778888887653 444433 3345789999999998 6888886543333444443
No 54
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.78 E-value=0.00013 Score=53.03 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=66.6
Q ss_pred CccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 6 AGEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 6 ~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
.+..+.++|... +++|++|++++++++.+.. +..+++|++|++++. ++..++.. ....+++|+.|++.
T Consensus 17 s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~--------~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 17 SGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAG--------VFDKLTQLTQLSLN 86 (170)
T ss_dssp TTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTT--------TTTTCTTCCEEECC
T ss_pred CCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChh--------hccCCCCCCEEECC
Confidence 345566666543 5899999999877887743 678899999999887 46655431 13457889999998
Q ss_pred CcccccccCCC-CcCCCCccEEeEecc
Q 031454 84 GLEKLRSIYPR-ALPFPHLKELKVDLC 109 (159)
Q Consensus 84 ~~~~L~~i~~~-~~~~psLe~L~i~~C 109 (159)
+. +++.+... ...+++|+.|.+.+-
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 75 57777654 346788888888765
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.78 E-value=5.9e-05 Score=61.25 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=62.7
Q ss_pred CCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccc--ccc--c-------c---c-CCCCCCCccceeccc
Q 031454 19 FFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------Q---M-QNRIPFARLECLSLY 83 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~---~-~~~~~fp~L~~L~l~ 83 (159)
+++|++|++++++++...++..+++|++|+++++. +..+.... ... . . . .....+|+|+.|++.
T Consensus 225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred cccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 56788888887667776677788888888888874 33332110 000 0 0 0 123457888888888
Q ss_pred CcccccccCCCCcCCCCccEEeEeccCCCCccCCC
Q 031454 84 GLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 84 ~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
++ +++.++.....+++|+.|.+.+++ +..+|..
T Consensus 304 ~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~ 336 (390)
T 3o6n_A 304 HN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLS 336 (390)
T ss_dssp SS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC
T ss_pred CC-cceecCccccccCcCCEEECCCCc-cceeCch
Confidence 77 566665544567888888888884 7777654
No 56
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.78 E-value=0.00011 Score=60.50 Aligned_cols=100 Identities=23% Similarity=0.304 Sum_probs=56.0
Q ss_pred CCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccC-CCC
Q 031454 19 FFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIY-PRA 95 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~-~~~ 95 (159)
+++|++|+++++++..+. .+..+++|++|++++|. +..+.. .....+++|+.|++.++ +++.+. ...
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 367 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS--------RMFENLDKLEVLDLSYN-HIRALGDQSF 367 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG--------GGGTTCTTCCEEECCSS-CCCEECTTTT
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh--------hHhcCcccCCEEECCCC-cccccChhhc
Confidence 444555555443343321 23344555555555542 222211 12345788888888887 455553 334
Q ss_pred cCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 96 LPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 96 ~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
..+++|+.|.+.++ +++++|......+.+|..+
T Consensus 368 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 368 LGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred cccccccEEECCCC-ccccCCHhHhccCCcccEE
Confidence 56889999999887 6888876543334555544
No 57
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.77 E-value=9.6e-05 Score=62.05 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=61.0
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc---------cc--CCC
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG---------QM--QNR 71 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~---------~~--~~~ 71 (159)
+|..+..+.++|....+++|++|++++++++.+ ++..+++|++|+++++. +..+. ...... .. ...
T Consensus 47 L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L~L~~N~l~~l~~ 123 (457)
T 3bz5_A 47 LDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYLNCDTNKLTKLDV 123 (457)
T ss_dssp EECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEECCSSCCSCCCC
T ss_pred EEccCCCcccChhhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCC-Cceee-cCCCCcCCEEECCCCcCCeecC
Confidence 344555566666666777888888877667665 36777788888777764 33321 110000 00 112
Q ss_pred CCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 72 IPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
..+++|+.|++.++ +++.+. ...+++|+.|.+.+|..+..++.
T Consensus 124 ~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~ 166 (457)
T 3bz5_A 124 SQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKLDV 166 (457)
T ss_dssp TTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCCCC
T ss_pred CCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccccc
Confidence 33455555555543 233331 33567777777777766665544
No 58
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.76 E-value=0.00013 Score=62.11 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=62.2
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCcccee
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECL 80 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L 80 (159)
+|-.+....++|... +++|++|++++++++.+. .+..+++|++|+++++ .+..+.+. ....+++|++|
T Consensus 36 l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--------~~~~l~~L~~L 105 (562)
T 3a79_B 36 VDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFH--------VFLFNQDLEYL 105 (562)
T ss_dssp EECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTT--------TTTTCTTCCEE
T ss_pred EEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHH--------HhCCCCCCCEE
Confidence 344555666777643 489999999997787775 4678999999999988 45555321 12335566666
Q ss_pred cccCcccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 81 SLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 81 ~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
++.+.. ++.++.. .+++|++|.+.++ ++..+|
T Consensus 106 ~Ls~N~-l~~lp~~--~l~~L~~L~Ls~N-~l~~l~ 137 (562)
T 3a79_B 106 DVSHNR-LQNISCC--PMASLRHLDLSFN-DFDVLP 137 (562)
T ss_dssp ECTTSC-CCEECSC--CCTTCSEEECCSS-CCSBCC
T ss_pred ECCCCc-CCccCcc--ccccCCEEECCCC-CccccC
Confidence 665543 4444433 4555555555555 244443
No 59
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.75 E-value=8.8e-05 Score=59.25 Aligned_cols=91 Identities=19% Similarity=0.121 Sum_probs=64.9
Q ss_pred ccccccCCCCCCCceEEEEec-CCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCc
Q 031454 9 EVKRILKTNGFFSLQRVSIGR-SKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGL 85 (159)
Q Consensus 9 ~~~~~p~~~~~~~L~~L~I~~-~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~ 85 (159)
.+.++|....+.+|++|++++ ++++.++. +..|++|+.|++++. ++..+++. ....+++|+.|+|.+
T Consensus 20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~--------~~~~l~~L~~L~l~~- 89 (347)
T 2ifg_A 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPD--------AFHFTPRLSRLNLSF- 89 (347)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTT--------GGGSCSCCCEEECCS-
T ss_pred CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHH--------HhcCCcCCCEEeCCC-
Confidence 466777766778899999997 88887753 678999999999887 57766542 134578888888877
Q ss_pred ccccccCCCCcCCCCccEEeEecc
Q 031454 86 EKLRSIYPRALPFPHLKELKVDLC 109 (159)
Q Consensus 86 ~~L~~i~~~~~~~psLe~L~i~~C 109 (159)
-+|+.++.......+|+.|.+.+.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSS
T ss_pred CccceeCHHHcccCCceEEEeeCC
Confidence 357776654433334888887654
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.74 E-value=0.00017 Score=61.62 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=57.5
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc--
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM-- 68 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~-- 68 (159)
|-.+.....+|... .++|++|++++++++.+.. +..+++|++|++++| .+..+.+.. ... . ..
T Consensus 17 ~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~ 94 (606)
T 3vq2_A 17 QCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQS 94 (606)
T ss_dssp ECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCC
T ss_pred EccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccc
Confidence 44455566666643 3788888888866766543 567888888888877 344443211 000 0 00
Q ss_pred ---CCCCCCCccceecccCcccccccC-CCCcCCCCccEEeEecc
Q 031454 69 ---QNRIPFARLECLSLYGLEKLRSIY-PRALPFPHLKELKVDLC 109 (159)
Q Consensus 69 ---~~~~~fp~L~~L~l~~~~~L~~i~-~~~~~~psLe~L~i~~C 109 (159)
.....+++|++|++.++. ++.+. .....+++|++|.+.+|
T Consensus 95 ~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n 138 (606)
T 3vq2_A 95 FSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHN 138 (606)
T ss_dssp CCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSS
T ss_pred cChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCC
Confidence 123345666666666553 33333 22334667777777766
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.73 E-value=0.00022 Score=55.08 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=56.9
Q ss_pred cccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc-----CCC
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM-----QNR 71 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~-----~~~ 71 (159)
+..+|... .++|++|++++++++.+. .+..+++|++|+++++ .+..+.... ... + .. ...
T Consensus 19 l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (276)
T 2z62_A 19 FYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 96 (276)
T ss_dssp CSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred ccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhh
Confidence 34455432 367888888886677654 3567888888888887 444443211 000 0 00 123
Q ss_pred CCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCc
Q 031454 72 IPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~ 114 (159)
..+++|++|.+.++ ++..+.. ....+++|+.|.+.++ ++..
T Consensus 97 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 138 (276)
T 2z62_A 97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQS 138 (276)
T ss_dssp TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred cCCccccEEECCCC-CccccCchhcccCCCCCEEECcCC-ccce
Confidence 34566666666654 2333332 2345677888877776 3544
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.72 E-value=0.00017 Score=58.35 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=18.8
Q ss_pred CCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcC
Q 031454 18 GFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDC 52 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C 52 (159)
.+++|++|++++++++.+.. +..+++|++|+++++
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45555566555544554432 445566666666554
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.70 E-value=9.2e-05 Score=61.72 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=21.6
Q ss_pred cccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 12 RILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 12 ~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
..+....+++|++|+++++++..+..+..+++|+.|++++|
T Consensus 257 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 257 NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297 (466)
T ss_dssp CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred cchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC
Confidence 33334455566666665544554444555555555555554
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.68 E-value=0.00018 Score=59.84 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--c---ccc------c-----cCCCCCCCccc
Q 031454 17 NGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--K---LGG------Q-----MQNRIPFARLE 78 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~---~~~------~-----~~~~~~fp~L~ 78 (159)
..+++|++|+++++++..+. .+..+++|++|++++|. +..++... . ... . ......+++|+
T Consensus 125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 45788888888886666543 35677888888888773 33332110 0 000 0 02344567888
Q ss_pred eecccCcccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 79 CLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 79 ~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
.|++.+++.+..+........+|+.|.+.+| ++..+|
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~ 240 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVP 240 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCC-cccccC
Confidence 8888887776666554444445666666555 344443
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.67 E-value=6.7e-05 Score=64.97 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=47.4
Q ss_pred ccccccCCCCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccc
Q 031454 9 EVKRILKTNGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEK 87 (159)
Q Consensus 9 ~~~~~p~~~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 87 (159)
.+.++|..+.+++|+.|++++++++.++ .+..+++|+.|+++++ .+..++ ....+++|+.|++.+. +
T Consensus 452 ~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp----------~l~~l~~L~~L~Ls~N-~ 519 (567)
T 1dce_A 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD----------GVANLPRLQELLLCNN-R 519 (567)
T ss_dssp CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG----------GGTTCSSCCEEECCSS-C
T ss_pred CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc----------ccCCCCCCcEEECCCC-C
Confidence 3444444445555555555554454443 2445555555555554 233332 1233556666666554 3
Q ss_pred cccc--CCCCcCCCCccEEeEeccCCCCccCC
Q 031454 88 LRSI--YPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 88 L~~i--~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
++.+ +.....+++|+.|.+.+++ +.++|.
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred CCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 4444 2233345666666666553 444443
No 66
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=97.62 E-value=2.5e-05 Score=55.12 Aligned_cols=92 Identities=13% Similarity=0.246 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCC-ccc-ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRH-VTW-LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~-l~~-l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
+..+........+++|++|+++++++.. ++. +..+++|++|+++++. +..+.... ....+++|+.|++.+
T Consensus 51 ~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~-------~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 51 NVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIE-------PLKKLENLKSLDLFN 122 (149)
T ss_dssp TSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHG-------GGGGCTTCCEEECTT
T ss_pred CCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHH-------HHhhCCCCCEEeCcC
Confidence 3445555666779999999999977877 443 3459999999999985 55442111 245689999999998
Q ss_pred cccccccCC----CCcCCCCccEEeEe
Q 031454 85 LEKLRSIYP----RALPFPHLKELKVD 107 (159)
Q Consensus 85 ~~~L~~i~~----~~~~~psLe~L~i~ 107 (159)
+ .+..+.. ....+++|+.|.++
T Consensus 123 N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 123 C-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp C-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred C-cccchHHHHHHHHHHCCCcccccCC
Confidence 7 5666654 23457888888764
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.62 E-value=0.00019 Score=61.28 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=21.9
Q ss_pred ccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcC
Q 031454 11 KRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHY 54 (159)
Q Consensus 11 ~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~ 54 (159)
..+|....+++|++|+++++++..++.+ .+++|++|++++|..
T Consensus 298 ~~l~~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 298 KYLEDVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp CCCCCCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSS
T ss_pred hhhhhccccccCCEEEcccccCcccccC-CCCccceeeccCCcC
Confidence 3444444455555555555334444433 555566666655543
No 68
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.62 E-value=7.9e-05 Score=54.14 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=70.4
Q ss_pred ccCCCCCCCceEEEEecCCcCCcccccCCC-CcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccccccc
Q 031454 13 ILKTNGFFSLQRVSIGRSKLRHVTWLILAP-NLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSI 91 (159)
Q Consensus 13 ~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp-~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i 91 (159)
.++.....+|+.|++++++++.++.+..+. +|+.|+++++ .+..+. ....+++|++|++.+. .++.+
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~----------~l~~l~~L~~L~Ls~N-~l~~~ 79 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD----------GFPLLRRLKTLLVNNN-RICRI 79 (176)
T ss_dssp SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC----------CCCCCSSCCEEECCSS-CCCEE
T ss_pred HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc----------ccccCCCCCEEECCCC-ccccc
Confidence 344556889999999997788776665554 9999999998 455541 2456899999999987 47777
Q ss_pred CCCC-cCCCCccEEeEeccCCCCccCC
Q 031454 92 YPRA-LPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 92 ~~~~-~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
.... ..+++|+.|.+.++ ++..+|.
T Consensus 80 ~~~~~~~l~~L~~L~L~~N-~i~~~~~ 105 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNN-SLVELGD 105 (176)
T ss_dssp CSCHHHHCTTCCEEECCSC-CCCCGGG
T ss_pred CcchhhcCCCCCEEECCCC-cCCcchh
Confidence 6544 56899999999998 5777775
No 69
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.61 E-value=0.00025 Score=52.42 Aligned_cols=95 Identities=18% Similarity=0.297 Sum_probs=68.3
Q ss_pred CccccccccC---CCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCcccee
Q 031454 6 AGEEVKRILK---TNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECL 80 (159)
Q Consensus 6 ~~~~~~~~p~---~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L 80 (159)
.+..+.+++. ...+++|++|++++++++.+. .+..+++|++|+++++. +..++.. ....+++|++|
T Consensus 37 ~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--------~~~~l~~L~~L 107 (192)
T 1w8a_A 37 NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNK--------MFLGLHQLKTL 107 (192)
T ss_dssp CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSS--------SSTTCTTCCEE
T ss_pred CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHH--------HhcCCCCCCEE
Confidence 3444555654 356899999999998788763 36789999999999884 5555431 24557999999
Q ss_pred cccCcccccccCC-CCcCCCCccEEeEeccC
Q 031454 81 SLYGLEKLRSIYP-RALPFPHLKELKVDLCP 110 (159)
Q Consensus 81 ~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp 110 (159)
++.+. +++.+.. ....+++|+.|.+.+.+
T Consensus 108 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 108 NLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred ECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99876 4555533 34568899999987764
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.61 E-value=0.00016 Score=61.40 Aligned_cols=52 Identities=10% Similarity=0.162 Sum_probs=37.8
Q ss_pred cccccccC--CCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccc
Q 031454 8 EEVKRILK--TNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVS 60 (159)
Q Consensus 8 ~~~~~~p~--~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~ 60 (159)
-.+.++|. -..+++|++|++++++++.+.. +..+++|++|+++++ +++.++.
T Consensus 62 N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 62 NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECG
T ss_pred CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCH
Confidence 34455554 3468899999999877887653 577899999999888 3666543
No 71
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.61 E-value=0.00015 Score=56.78 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=19.5
Q ss_pred CCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCC
Q 031454 74 FARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+++|+.|++.++ +++.+.. ....+++|+.|.+.++ ++.+++.
T Consensus 174 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 216 (306)
T 2z66_A 174 LRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT 216 (306)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCS
T ss_pred CcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccCh
Confidence 455555555544 2333322 2233556666666555 3444443
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.59 E-value=0.0003 Score=59.30 Aligned_cols=57 Identities=19% Similarity=0.150 Sum_probs=38.3
Q ss_pred CCCCCccceecccCccccccc-CCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 71 RIPFARLECLSLYGLEKLRSI-YPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 71 ~~~fp~L~~L~l~~~~~L~~i-~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
...+++|+.|++.++. ++.+ +.....+++|+.|.+.+| ++.++|........+|..+
T Consensus 466 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEE
T ss_pred hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEE
Confidence 4557888888888873 4554 333456789999999998 6888776433334555544
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.57 E-value=0.00017 Score=57.83 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=18.6
Q ss_pred CCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcC
Q 031454 18 GFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDC 52 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C 52 (159)
.+++|++|++++++++.++. +..+++|++|+++++
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 134 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC
Confidence 45566666665544554432 345555555555554
No 74
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.57 E-value=0.00031 Score=55.65 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=43.4
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceec
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLS 81 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~ 81 (159)
+..+.....+|... .++|++|++++++++.+.. +..+++|++|+++++. +..+.+. ....+++|++|+
T Consensus 37 ~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------~~~~l~~L~~L~ 106 (330)
T 1xku_A 37 QCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPG--------AFAPLVKLERLY 106 (330)
T ss_dssp ECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTT--------TTTTCTTCCEEE
T ss_pred EecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHH--------HhcCCCCCCEEE
Confidence 33444555565433 4788888888866776643 6778888999888873 4444221 123345555555
Q ss_pred ccCc
Q 031454 82 LYGL 85 (159)
Q Consensus 82 l~~~ 85 (159)
+.+.
T Consensus 107 Ls~n 110 (330)
T 1xku_A 107 LSKN 110 (330)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5543
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.57 E-value=0.00024 Score=59.64 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=58.1
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCcccee
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECL 80 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L 80 (159)
+|-.+..+.++|.... ++|++|++++++++.+. .+..+++|++|+++++. +..+.+. ....+++|++|
T Consensus 5 l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--------~~~~l~~L~~L 74 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDIS--------VFKFNQELEYL 74 (520)
T ss_dssp EECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGG--------GGTTCTTCCEE
T ss_pred EecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChH--------HhhcccCCCEE
Confidence 3445556667776444 89999999997777764 36789999999998884 4444321 12335556666
Q ss_pred cccCcccccccCCCCcCCCCccEEeEecc
Q 031454 81 SLYGLEKLRSIYPRALPFPHLKELKVDLC 109 (159)
Q Consensus 81 ~l~~~~~L~~i~~~~~~~psLe~L~i~~C 109 (159)
++.+. +++.++.. .+++|++|.+.++
T Consensus 75 ~Ls~N-~l~~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 75 DLSHN-KLVKISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp ECCSS-CCCEEECC--CCCCCSEEECCSS
T ss_pred ecCCC-ceeecCcc--ccCCccEEeccCC
Confidence 66554 34444333 4555555555555
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.57 E-value=0.0003 Score=61.62 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=62.2
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc-------ccCC-CCCC
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG-------QMQN-RIPF 74 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~-------~~~~-~~~f 74 (159)
+|..+..+.++|.... ++|++|++++++++.++. .+++|++|++++|. +..++..-.... .... ...+
T Consensus 45 L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~~l 120 (622)
T 3g06_A 45 LNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPALP 120 (622)
T ss_dssp EECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECSCCCCCCCCCC
T ss_pred EEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcCCcCCCCCCCC
Confidence 4455666667776443 888888888877777655 67888888888874 555443100000 0000 1135
Q ss_pred CccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 75 ARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
++|+.|.+.++ +++.++. .+++|++|.+.+| ++.++|.
T Consensus 121 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 121 SGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC
T ss_pred CCcCEEECCCC-CCCcCCC---CCCCCCEEECcCC-cCCCcCC
Confidence 66777766655 3444433 3467777777776 4555553
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.57 E-value=0.00028 Score=55.93 Aligned_cols=46 Identities=11% Similarity=0.004 Sum_probs=34.2
Q ss_pred CCCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCC
Q 031454 71 RIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 71 ~~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
...+++|+.|++.++ .++.++.....+++|+.|.+.++ ++..+|..
T Consensus 236 ~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~ 281 (330)
T 1xku_A 236 LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSN 281 (330)
T ss_dssp GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChh
Confidence 345688888888887 56677665567788999998888 47777654
No 78
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.57 E-value=0.00025 Score=59.71 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=18.9
Q ss_pred CCCceEEEEecCCcCCcc--cccCCCCcceEEEEcC
Q 031454 19 FFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDC 52 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C 52 (159)
+++|++|++++++++.+. .+..+++|++|+++++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n 60 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCC
Confidence 356666666664455432 2455566666666555
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.56 E-value=0.00042 Score=58.97 Aligned_cols=112 Identities=16% Similarity=0.099 Sum_probs=74.2
Q ss_pred CCCCCCceEEEEecCCcCCcc----cccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc--CCCCCC-Ccc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVT----WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM--QNRIPF-ARL 77 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~----~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~--~~~~~f-p~L 77 (159)
...+++|++|++++++++.+. .+..+++|+.|+++++.--..++... ... . .. .....+ ++|
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L 452 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence 456889999999987777653 25778999999998885322233210 000 0 00 011223 689
Q ss_pred ceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 78 ECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 78 ~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
+.|++.++ +++.++.....+++|+.|.+.++ +++.+|.........+..+
T Consensus 453 ~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 453 KVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp SEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCE
T ss_pred CEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEE
Confidence 99999988 78888776668999999999998 6888987632333444443
No 80
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.56 E-value=0.00011 Score=65.40 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCC
Q 031454 17 NGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRA 95 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~ 95 (159)
..+++|+.|+++++++..++ .+..+++|++|+++++ .+..++. ....+++|+.|+|.+.. |+.++...
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~---------~~~~l~~L~~L~Ls~N~-l~~lp~~~ 289 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPA---------EIKNLSNLRVLDLSHNR-LTSLPAEL 289 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCG---------GGGGGTTCCEEECTTSC-CSSCCSSG
T ss_pred ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccCh---------hhhCCCCCCEEeCcCCc-CCccChhh
Confidence 34678888888886676664 3567888888888877 3445542 23457888888888764 66776555
Q ss_pred cCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 96 LPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 96 ~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
..+++|++|.+.++ ++..+|... ..+.+|...
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~-~~l~~L~~L 321 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEF-GNLCNLQFL 321 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSST-TSCTTCCCE
T ss_pred cCCCCCCEEECCCC-CCCccChhh-hcCCCccEE
Confidence 66788888888887 677777653 223444443
No 81
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.00037 Score=58.42 Aligned_cols=112 Identities=16% Similarity=0.159 Sum_probs=74.3
Q ss_pred CCCCCCceEEEEecCCcCCcc----cccCCCCcceEEEEcCcCCccccccc--cccc---------cc--CCCCCC-Ccc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVT----WLILAPNLKRISMHDCHYLEEIVSLE--KLGG---------QM--QNRIPF-ARL 77 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~----~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~~---------~~--~~~~~f-p~L 77 (159)
...+++|++|++++++++.+. .+..+++|++|+++++.--..++... .... .. .....+ ++|
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L 423 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI 423 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTC
T ss_pred hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccC
Confidence 467899999999997787642 36789999999999885333243210 0000 00 001123 688
Q ss_pred ceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 78 ECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 78 ~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
+.|++.++ +++.++.....+++|+.|.+.+| +++.+|.........|..+
T Consensus 424 ~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 424 KVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKI 473 (520)
T ss_dssp CEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEE
Confidence 99998887 67777665568999999999999 6888987632333445444
No 82
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.54 E-value=0.00024 Score=55.15 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=58.9
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc------------ccCCCCCC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG------------QMQNRIPF 74 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~------------~~~~~~~f 74 (159)
+..+..++....+++|++|++++++++.++.+.. ++|+.|+++++ .+..+........ .......+
T Consensus 72 ~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l 149 (263)
T 1xeu_A 72 HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFL 149 (263)
T ss_dssp SSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGC
T ss_pred CCccCCChhhccCCCCCEEECCCCccCCcCcccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCCChHHccC
Confidence 3444455555567777777777766666544444 66777776666 2333221110000 01224557
Q ss_pred CccceecccCcccccccCCCCcCCCCccEEeEeccC
Q 031454 75 ARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCP 110 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp 110 (159)
++|+.|++.++ .++.+ .....+++|+.|.+.+++
T Consensus 150 ~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 150 SKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred CCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCCc
Confidence 88999999875 45555 334568899999998874
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.54 E-value=0.00061 Score=56.55 Aligned_cols=33 Identities=9% Similarity=0.368 Sum_probs=16.6
Q ss_pred CCceEEEEecCCcCCcc--cccCCCCcceEEEEcC
Q 031454 20 FSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDC 52 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C 52 (159)
++|+.|++++++++.+. .+..+++|++|+++++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 66 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCC
Confidence 45555555554454432 2344555555555544
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.52 E-value=0.00052 Score=57.83 Aligned_cols=107 Identities=19% Similarity=0.211 Sum_probs=63.2
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--ccc--c-------cc--
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------QM-- 68 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~~-- 68 (159)
|..+.....+|.. -.+++++|++++++++.+. .+..+++|++|++++|. +..+.... ... . ..
T Consensus 13 ~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 13 QCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp ECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCc
Confidence 3444455566653 3467889998886677653 36778889999888883 55543211 000 0 00
Q ss_pred ---CCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCc
Q 031454 69 ---QNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 69 ---~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~ 114 (159)
.....+++|++|++.+. +++.+.. ....+++|++|.+.++ .+..
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~ 138 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQS 138 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSS-CCCC
T ss_pred cCHhhhcCcccccccccccc-ccccCCCccccccccccEEecCCC-ccce
Confidence 12344567777777655 3444443 2345678888888777 3444
No 85
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.51 E-value=0.00047 Score=52.01 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=59.1
Q ss_pred CCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--ccc--c-------c---c--CCCCCCCccc
Q 031454 17 NGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--KLG--G-------Q---M--QNRIPFARLE 78 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~---~--~~~~~fp~L~ 78 (159)
..+++|++|++++++++.+.. +..+++|++|+++++. +..++... ... . . . .....+++|+
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 132 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC
Confidence 457888888888866776643 6678888888887763 33332210 000 0 0 1 2245578999
Q ss_pred eecccCcccccccCC-CCcCCCCccEEeEeccC
Q 031454 79 CLSLYGLEKLRSIYP-RALPFPHLKELKVDLCP 110 (159)
Q Consensus 79 ~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp 110 (159)
.|++.+. +++.+.. ....+++|+.|.+.+.+
T Consensus 133 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 133 LLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 9999875 5666643 34468899999887664
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.51 E-value=0.00021 Score=61.54 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=60.9
Q ss_pred CCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccc--ccc--c----------cc-CCCCCCCccceeccc
Q 031454 19 FFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLE--KLG--G----------QM-QNRIPFARLECLSLY 83 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~----------~~-~~~~~fp~L~~L~l~ 83 (159)
+++|+.|++++++++.+.++..+++|+.|+++++. +..+++.. ... . +. .....+|+|+.|++.
T Consensus 231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence 45788888877667766677788888888888774 33332111 000 0 00 123447788888887
Q ss_pred CcccccccCCCCcCCCCccEEeEeccCCCCccCCC
Q 031454 84 GLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 84 ~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
++ .+..++.....+++|+.|.+.+|. +..+|..
T Consensus 310 ~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~ 342 (597)
T 3oja_B 310 HN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLS 342 (597)
T ss_dssp SS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCC
T ss_pred CC-CCCccCcccccCCCCCEEECCCCC-CCCcChh
Confidence 76 455555444567888888888884 6777654
No 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.51 E-value=0.0007 Score=54.69 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=64.2
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCccc--cc-CCCCcceEEEEcCcCCccccccc--ccc--c-------c---c-
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LI-LAPNLKRISMHDCHYLEEIVSLE--KLG--G-------Q---M- 68 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~-~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-------~---~- 68 (159)
+..+..+|. ...++++.|++++++++.+.. +. .+++|++|+++++ ++..+.... ... . . .
T Consensus 27 ~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 27 KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp SSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCC
Confidence 444566665 345779999999987887643 44 8999999999887 455544211 000 0 0 0
Q ss_pred -CCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCC
Q 031454 69 -QNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 69 -~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
.....+++|+.|++.+.. ++.+.. ....+++|+.|.+.++ ++..+|..
T Consensus 105 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 154 (361)
T 2xot_A 105 EFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE 154 (361)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred HHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence 112345666666665543 333322 2334677777777776 56676654
No 88
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.50 E-value=0.00012 Score=58.05 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCCCCceEEEEecCCcCCccc--c-cCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCC
Q 031454 17 NGFFSLQRVSIGRSKLRHVTW--L-ILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYP 93 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~~--l-~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~ 93 (159)
..+++|++|+++++++..+.. + ..+++|++|+++++. +..+.. ...+++|+.|++.++ +++.+..
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----------~~~l~~L~~L~Ls~N-~l~~l~~ 208 (317)
T 3o53_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG----------QVVFAKLKTLDLSSN-KLAFMGP 208 (317)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC----------CCCCTTCCEEECCSS-CCCEECG
T ss_pred hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccc----------ccccccCCEEECCCC-cCCcchh
Confidence 447899999999977776532 2 468999999998884 444421 234778888888765 4555554
Q ss_pred CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 94 RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 94 ~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
....+++|+.|.+.++ ++..+|.... ....+..+
T Consensus 209 ~~~~l~~L~~L~L~~N-~l~~l~~~~~-~l~~L~~L 242 (317)
T 3o53_A 209 EFQSAAGVTWISLRNN-KLVLIEKALR-FSQNLEHF 242 (317)
T ss_dssp GGGGGTTCSEEECTTS-CCCEECTTCC-CCTTCCEE
T ss_pred hhcccCcccEEECcCC-cccchhhHhh-cCCCCCEE
Confidence 4445678888888877 5777776432 22444444
No 89
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.50 E-value=0.00049 Score=57.72 Aligned_cols=103 Identities=12% Similarity=0.105 Sum_probs=56.7
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc---------cc--CCCCCCC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG---------QM--QNRIPFA 75 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~---------~~--~~~~~fp 75 (159)
+..+.++| .+.+++|++|++++++++.+ .+..+++|++|+++++. +..+. ...... .. .....++
T Consensus 73 ~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~l~~l~ 148 (457)
T 3bz5_A 73 SNNITTLD-LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEIDVSHNT 148 (457)
T ss_dssp SSCCSCCC-CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCCCTTCT
T ss_pred CCcCCeEc-cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCc-CCeec-CCCCCcCCEEECCCCccceeccccCC
Confidence 33444544 56678888888887667665 36777888888887773 33332 110000 00 1234466
Q ss_pred ccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 76 RLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 76 ~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
+|+.|++.++..+..+. ...+++|+.|.+.++ +++.+|
T Consensus 149 ~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~l~ 186 (457)
T 3bz5_A 149 QLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD 186 (457)
T ss_dssp TCCEEECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCCCC
T ss_pred cCCEEECCCCCcccccc--cccCCcCCEEECCCC-ccceec
Confidence 77777777665554441 224455555555555 344444
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.48 E-value=0.00052 Score=52.94 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=68.8
Q ss_pred cccccccc--CCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccc--cc---cc-----c----cc
Q 031454 7 GEEVKRIL--KTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSL--EK---LG-----G----QM 68 (159)
Q Consensus 7 ~~~~~~~p--~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~--~~---~~-----~----~~ 68 (159)
+..+...+ .-..+++|++|++++++++.+.. +..+++|++|+++++. +..+... .. .. . +.
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 115 (276)
T 2z62_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASL 115 (276)
T ss_dssp TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCcccc
Confidence 34444444 34568899999998876776543 6678899999988874 3333211 00 00 0 01
Q ss_pred --CCCCCCCccceecccCcccccc--cCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 69 --QNRIPFARLECLSLYGLEKLRS--IYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 69 --~~~~~fp~L~~L~l~~~~~L~~--i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
.....+++|++|.+.+.. ++. ++.....+++|+.|.+.++ ++..++.
T Consensus 116 ~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~ 166 (276)
T 2z62_A 116 ENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 166 (276)
T ss_dssp TTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred CchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCH
Confidence 134567899999998753 443 2333456899999999998 5777664
No 91
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.46 E-value=0.00021 Score=56.74 Aligned_cols=88 Identities=15% Similarity=0.155 Sum_probs=53.8
Q ss_pred CCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCCcC
Q 031454 20 FSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRALP 97 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~~~ 97 (159)
++|++|++++++++.+. .+..+++|++|+++++ .+..+.. .....+++|+.|++.++ +++.++.....
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~--------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~ 262 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN--------GSLSFLPTLRELHLDNN-KLSRVPAGLPD 262 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT--------TGGGGCTTCCEEECCSS-CCCBCCTTGGG
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCCh--------hHhhCCCCCCEEECCCC-cCeecChhhhc
Confidence 45555555554444432 2445556666666555 2332221 12345788889888876 56677665567
Q ss_pred CCCccEEeEeccCCCCccCCC
Q 031454 98 FPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 98 ~psLe~L~i~~Cp~L~~lP~~ 118 (159)
+++|+.|.+.++ ++..+|..
T Consensus 263 l~~L~~L~l~~N-~l~~~~~~ 282 (332)
T 2ft3_A 263 LKLLQVVYLHTN-NITKVGVN 282 (332)
T ss_dssp CTTCCEEECCSS-CCCBCCTT
T ss_pred CccCCEEECCCC-CCCccChh
Confidence 888999999887 57777654
No 92
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.46 E-value=0.00051 Score=60.20 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=59.8
Q ss_pred cccCccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc-------ccCC-CCCC
Q 031454 3 IDYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG-------QMQN-RIPF 74 (159)
Q Consensus 3 ~~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~-------~~~~-~~~f 74 (159)
++-.+..+.++|. .+++|++|++++++++.++. .+++|++|+++++ .+..++....... .... ...+
T Consensus 66 L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N-~l~~l~~~l~~L~~L~L~~N~l~~lp~~l 140 (622)
T 3g06_A 66 LVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLPVLP 140 (622)
T ss_dssp EEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC-CCCCCCCCCTTCCEEECCSSCCSCCCCCC
T ss_pred EEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC-cCCCCCCCCCCcCEEECCCCCCCcCCCCC
Confidence 3445566677777 68999999999977887755 7899999999887 3444432110000 0101 1235
Q ss_pred CccceecccCcccccccCCCCcCCCCccEEeEecc
Q 031454 75 ARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLC 109 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~C 109 (159)
++|++|++.++ +++.++. .+++|+.|.+.++
T Consensus 141 ~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N 171 (622)
T 3g06_A 141 PGLQELSVSDN-QLASLPA---LPSELCKLWAYNN 171 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred CCCCEEECcCC-cCCCcCC---ccCCCCEEECCCC
Confidence 88999998876 5555432 2344444444443
No 93
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.46 E-value=0.00087 Score=60.06 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=75.9
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--c---cc-----c-cc--
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--K---LG-----G-QM-- 68 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~---~~-----~-~~-- 68 (159)
|..+....++|. ..++|++|++++++++.+. .+..+++|++|++++|.....+.+.. . .. . ..
T Consensus 10 dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 10 FYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp EESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred EccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 344556677777 6789999999997777653 46789999999999996555542211 0 00 0 00
Q ss_pred ---CCCCCCCccceecccCcccccc-cCCC--CcCCCCccEEeEeccCCCCccCCC-CCCCCCCceEE
Q 031454 69 ---QNRIPFARLECLSLYGLEKLRS-IYPR--ALPFPHLKELKVDLCPELKKLPFD-CTSGLERKLII 129 (159)
Q Consensus 69 ---~~~~~fp~L~~L~l~~~~~L~~-i~~~--~~~~psLe~L~i~~Cp~L~~lP~~-~~~~~~~l~~v 129 (159)
.....+++|++|++.++. +.. +... ...+++|+.|.+.++ ++.+++.. ....+.+|...
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEE
T ss_pred cCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEE
Confidence 234556788888888763 333 3222 346788999999888 45555432 12223455544
No 94
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=97.45 E-value=0.00057 Score=53.44 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcc-cccc-cccc--c-------cc-----CCCCCCCcc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEE-IVSL-EKLG--G-------QM-----QNRIPFARL 77 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~-l~~~-~~~~--~-------~~-----~~~~~fp~L 77 (159)
...+++|++|+++++++.... .+..+++|++|+++++.--.. ++.. .... . .. .....+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 334566666666664443321 244566677776666632211 1110 0000 0 00 224457899
Q ss_pred ceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCC
Q 031454 78 ECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 78 ~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+.|++.++. ++.+.. ....+++|+.|.+.++ ++...+.
T Consensus 202 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 240 (306)
T 2z66_A 202 QVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK 240 (306)
T ss_dssp CEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-CCCBCSS
T ss_pred CEEECCCCc-cCccChhhccCcccCCEeECCCC-CCcccCH
Confidence 999998764 555543 2345799999999999 4655443
No 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.43 E-value=0.00059 Score=50.56 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=66.6
Q ss_pred ccccccccC-CCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 7 GEEVKRILK-TNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 7 ~~~~~~~p~-~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
+..+..+|. -..+++|++|++++++++.+.. +..+++|++|+++++. +..++.. ....+++|+.|++.
T Consensus 40 ~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~--------~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 40 GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPR--------TFDGLKSLRLLSLH 110 (193)
T ss_dssp SSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTT--------TTTTCTTCCEEECC
T ss_pred CCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHH--------HhCCCCCCCEEECC
Confidence 334445543 3458999999999988887754 6789999999999884 5555431 24567999999998
Q ss_pred CcccccccCCC-CcCCCCccEEeEecc
Q 031454 84 GLEKLRSIYPR-ALPFPHLKELKVDLC 109 (159)
Q Consensus 84 ~~~~L~~i~~~-~~~~psLe~L~i~~C 109 (159)
+. +++.+... ...+++|+.|.+.+-
T Consensus 111 ~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 111 GN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CC-CCCeeChhhhhcCccccEEEeCCC
Confidence 75 46666653 335788888887654
No 96
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.42 E-value=9.8e-05 Score=65.65 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=72.6
Q ss_pred ccccccccC-CCCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 7 GEEVKRILK-TNGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 7 ~~~~~~~p~-~~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
+..+..+|. ...+++|++|++++++++.++ .+..|++|+.|+++++. +..++. ....+++|++|.+.+
T Consensus 233 ~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~---------~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPA---------ELGSCFQLKYFYFFD 302 (727)
T ss_dssp TSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCS---------SGGGGTTCSEEECCS
T ss_pred CCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccCh---------hhcCCCCCCEEECCC
Confidence 334445553 456899999999997788775 47889999999999985 556643 245688999999998
Q ss_pred cccccccCCCCcCCCCccEEeEeccC
Q 031454 85 LEKLRSIYPRALPFPHLKELKVDLCP 110 (159)
Q Consensus 85 ~~~L~~i~~~~~~~psLe~L~i~~Cp 110 (159)
+ .++.++.....+++|+.|.+.+++
T Consensus 303 N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 303 N-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp S-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred C-CCCccChhhhcCCCccEEeCCCCc
Confidence 7 678887766678999999999885
No 97
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.40 E-value=0.00051 Score=59.46 Aligned_cols=123 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred ccCccccccccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCccccccc--c---cc-----c----c
Q 031454 4 DYAGEEVKRILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLE--K---LG-----G----Q 67 (159)
Q Consensus 4 ~~~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~--~---~~-----~----~ 67 (159)
|-.+.....+|... .++|++|++++++++.+.. +..+++|++|+++++. +..+.+.. . .. . .
T Consensus 10 ~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 10 DCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp ECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred ECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCc
Confidence 33444555666543 3788888888866776643 5678888888887763 33332210 0 00 0 0
Q ss_pred c--CCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 68 M--QNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 68 ~--~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
. .....+++|++|++.++ +++.+.. ....+++|+.|.+.+| ++..++......+.+|+...
T Consensus 88 l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEE
T ss_pred cChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEE
Confidence 0 12445678888888876 4555553 3346788999999888 46665544333345555553
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.40 E-value=0.0006 Score=59.04 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=66.4
Q ss_pred ccCccccccccC--CCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccc--cccc--c---------
Q 031454 4 DYAGEEVKRILK--TNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSL--EKLG--G--------- 66 (159)
Q Consensus 4 ~~~~~~~~~~p~--~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~--~~~~--~--------- 66 (159)
|..+..+.+.+. -..+++|++|++++++++.+.. +..+++|++|+++++ .+..++.. .... +
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l 109 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSI 109 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCCcc
Confidence 344444555554 3457788888887755655432 456777777777776 34444321 0000 0
Q ss_pred -cc--CCCCCCCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCccCC
Q 031454 67 -QM--QNRIPFARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 67 -~~--~~~~~fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
.. .....+++|++|++.++. +..+.. ....+++|+.|.+.++ ++..++.
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 162 (680)
T 1ziw_A 110 QKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNN-KIQALKS 162 (680)
T ss_dssp CCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSS-CCCCBCH
T ss_pred CccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCC-cccccCH
Confidence 00 124557899999999874 444433 3346899999999988 4666553
No 99
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=97.40 E-value=0.00048 Score=56.60 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=61.8
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--c---ccc------c-----c
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--K---LGG------Q-----M 68 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~---~~~------~-----~ 68 (159)
+..+..+|. ..++|++|++++++++.+. .+..+++|++|+++++.-...+.... . ... . .
T Consensus 19 ~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 19 NRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp SSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 445556666 3478899998886676652 36778888888888885433332110 0 000 0 0
Q ss_pred CCCCCCCccceecccCcccccc-cCCC--CcCCCCccEEeEeccCCCCcc
Q 031454 69 QNRIPFARLECLSLYGLEKLRS-IYPR--ALPFPHLKELKVDLCPELKKL 115 (159)
Q Consensus 69 ~~~~~fp~L~~L~l~~~~~L~~-i~~~--~~~~psLe~L~i~~Cp~L~~l 115 (159)
.....+++|++|++.++. ++. +... ...+++|+.|.+.++. +..+
T Consensus 97 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~ 144 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKI 144 (455)
T ss_dssp TTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSC
T ss_pred hhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCcc
Confidence 224456778888887763 332 2111 3457888888888773 5444
No 100
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.39 E-value=0.001 Score=56.75 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=61.0
Q ss_pred CCCCCceEEEEecCCcCCcc-cccCCCCcceEEEEcCcCCccccccc--ccc--c-----------cc--CCCCCCCccc
Q 031454 17 NGFFSLQRVSIGRSKLRHVT-WLILAPNLKRISMHDCHYLEEIVSLE--KLG--G-----------QM--QNRIPFARLE 78 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~--~~~--~-----------~~--~~~~~fp~L~ 78 (159)
..+++|++|++++++++.++ .+..+++|++|++++|. +..+.+.. ... . .. .....+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 45788888888886676664 46778888888888774 33322110 000 0 00 1133456777
Q ss_pred eecccCccccccc---CCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 79 CLSLYGLEKLRSI---YPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 79 ~L~l~~~~~L~~i---~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
+|++.++. ++.+ ......+++|+.|.+.+|. +..++......+.+|....
T Consensus 354 ~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 354 ELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp EEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEE
T ss_pred EEECCCCc-cccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEE
Confidence 77776543 2222 2233457788888887773 5555433222234455443
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.39 E-value=0.0003 Score=60.91 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=74.0
Q ss_pred CceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCCcCCCC
Q 031454 21 SLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRALPFPH 100 (159)
Q Consensus 21 ~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~~~~ps 100 (159)
.|+.|++++++++.++.+..+++|+.|+++++ .+..++. ....+++|+.|++.+. +++.++ ....+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~---------~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~ 509 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPP---------ALAALRCLEVLQASDN-ALENVD-GVANLPR 509 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCG---------GGGGCTTCCEEECCSS-CCCCCG-GGTTCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcc-cccccch---------hhhcCCCCCEEECCCC-CCCCCc-ccCCCCC
Confidence 58999999988888877899999999999998 4556643 2456899999999875 566665 4557899
Q ss_pred ccEEeEeccCCCCcc--CCCCCCCCCCceEEe
Q 031454 101 LKELKVDLCPELKKL--PFDCTSGLERKLIIK 130 (159)
Q Consensus 101 Le~L~i~~Cp~L~~l--P~~~~~~~~~l~~v~ 130 (159)
|+.|.+.++ ++.++ |... ..+.+|..+.
T Consensus 510 L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~ 539 (567)
T 1dce_A 510 LQELLLCNN-RLQQSAAIQPL-VSCPRLVLLN 539 (567)
T ss_dssp CCEEECCSS-CCCSSSTTGGG-GGCTTCCEEE
T ss_pred CcEEECCCC-CCCCCCCcHHH-hcCCCCCEEE
Confidence 999999998 68888 4432 2346666665
No 102
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.39 E-value=0.00065 Score=56.91 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=44.6
Q ss_pred CCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc----------ccCCCCCCCccceecccCccccc
Q 031454 20 FSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG----------QMQNRIPFARLECLSLYGLEKLR 89 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~----------~~~~~~~fp~L~~L~l~~~~~L~ 89 (159)
++|++|++++++++.++.+..+++|++|+++++ .+..++......+ .......+++|+.|++.++. ++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l~ 208 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LK 208 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-CC
Confidence 456666665544555545556666666666665 2333322100000 00123334555555555442 33
Q ss_pred ccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 90 SIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 90 ~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
.++. ..++|++|.+.+| ++..+|
T Consensus 209 ~l~~---~~~~L~~L~l~~n-~l~~lp 231 (454)
T 1jl5_A 209 KLPD---LPLSLESIVAGNN-ILEELP 231 (454)
T ss_dssp SCCC---CCTTCCEEECCSS-CCSSCC
T ss_pred cCCC---CcCcccEEECcCC-cCCccc
Confidence 3221 2357777777777 466666
No 103
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.38 E-value=0.0011 Score=56.51 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=76.3
Q ss_pred ccccccccC-CCCCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCccccccc--c---ccc------c-----
Q 031454 7 GEEVKRILK-TNGFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--K---LGG------Q----- 67 (159)
Q Consensus 7 ~~~~~~~p~-~~~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~---~~~------~----- 67 (159)
+..+..+|. ...+++|++|++++++++.+. .+..+++|++|++++|.....++... . ... .
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 444556665 456899999999997777653 46788999999999885443332210 0 000 0
Q ss_pred --cCCCCCCCccceecccCcccccccC-CCCcCCCCccEEeEeccCCCCcc-CCCCCCCCCCceEEe
Q 031454 68 --MQNRIPFARLECLSLYGLEKLRSIY-PRALPFPHLKELKVDLCPELKKL-PFDCTSGLERKLIIK 130 (159)
Q Consensus 68 --~~~~~~fp~L~~L~l~~~~~L~~i~-~~~~~~psLe~L~i~~Cp~L~~l-P~~~~~~~~~l~~v~ 130 (159)
......+++|++|++.++. +..+. .....+++|+.|.+.+|. +... |.........|....
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEE
T ss_pred CcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEE
Confidence 1134567999999998874 44443 334568999999999985 4433 333223335555554
No 104
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.36 E-value=0.00081 Score=53.57 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=69.5
Q ss_pred eEEEEec-CCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCC-cCCCC
Q 031454 23 QRVSIGR-SKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRA-LPFPH 100 (159)
Q Consensus 23 ~~L~I~~-~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~-~~~ps 100 (159)
..++.++ ++++.++.+..+++|+.|+++++..+..++.. ....+++|+.|+|.+. +|+.+.... ..+++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~--------~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~ 81 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELR--------DLRGLGELRNLTIVKS-GLRFVAPDAFHFTPR 81 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGG--------GSCSCCCCSEEECCSS-CCCEECTTGGGSCSC
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChh--------HhccccCCCEEECCCC-ccceeCHHHhcCCcC
Confidence 3467777 58998877788899999999987788887642 2456899999999987 688887643 56899
Q ss_pred ccEEeEeccCCCCccCCCC
Q 031454 101 LKELKVDLCPELKKLPFDC 119 (159)
Q Consensus 101 Le~L~i~~Cp~L~~lP~~~ 119 (159)
|+.|.+.+. +|..+|...
T Consensus 82 L~~L~l~~N-~l~~~~~~~ 99 (347)
T 2ifg_A 82 LSRLNLSFN-ALESLSWKT 99 (347)
T ss_dssp CCEEECCSS-CCSCCCSTT
T ss_pred CCEEeCCCC-ccceeCHHH
Confidence 999999986 688888653
No 105
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.34 E-value=0.00019 Score=62.51 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=36.1
Q ss_pred ccccccC-CCCCCCceEEEEecCCcCC------------------cc-ccc--CCCCcceEEEEcCcCCcccc
Q 031454 9 EVKRILK-TNGFFSLQRVSIGRSKLRH------------------VT-WLI--LAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 9 ~~~~~p~-~~~~~~L~~L~I~~~~l~~------------------l~-~l~--~Lp~Le~L~I~~C~~l~~l~ 59 (159)
.+.++|. .+.+++|++|++++++++. ++ .+. .+++|++|++++|.-...++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 3334554 4568899999999855776 43 355 78999999999987555544
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.32 E-value=0.00049 Score=54.49 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=66.1
Q ss_pred CCCCceEEEEecCCcCCcc--cccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCC
Q 031454 18 GFFSLQRVSIGRSKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRA 95 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~ 95 (159)
.+++|++|++++++++.+. .+..+++|++|+++++. +..+.... -...+++|+.|++.++. ++.+.. .
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------~~~~l~~L~~L~L~~N~-l~~~~~-~ 187 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE-------LAASSDTLEHLNLQYNF-IYDVKG-Q 187 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG-------GGGGTTTCCEEECTTSC-CCEEEC-C
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHH-------HhhccCcCCEEECCCCc-Cccccc-c
Confidence 3788999999887777664 35668889999988873 44332211 01246889999988764 555533 2
Q ss_pred cCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 96 LPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 96 ~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
..+++|+.|.+.++ ++..+|.... ...+|....
T Consensus 188 ~~l~~L~~L~Ls~N-~l~~l~~~~~-~l~~L~~L~ 220 (317)
T 3o53_A 188 VVFAKLKTLDLSSN-KLAFMGPEFQ-SAAGVTWIS 220 (317)
T ss_dssp CCCTTCCEEECCSS-CCCEECGGGG-GGTTCSEEE
T ss_pred cccccCCEEECCCC-cCCcchhhhc-ccCcccEEE
Confidence 34788999999888 5777766422 224455444
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.32 E-value=3.3e-05 Score=61.10 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCCCCCceEEEEecCCcCC--cc-cccCCCCcceEEEEcCc
Q 031454 16 TNGFFSLQRVSIGRSKLRH--VT-WLILAPNLKRISMHDCH 53 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~--l~-~l~~Lp~Le~L~I~~C~ 53 (159)
...+++|++|+++++.+.. ++ .+..+++|++|++++|.
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc
Confidence 4457788888888744543 21 24667788888887774
No 108
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.32 E-value=0.0009 Score=56.27 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=56.7
Q ss_pred CCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccc--ccc---c-----c-cc------CCCCCCCc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSL--EKL---G-----G-QM------QNRIPFAR 76 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~--~~~---~-----~-~~------~~~~~fp~ 76 (159)
-..+++|++|++++++++.+.. +..+++|++|+++++. +..++.. ... . . .. .....+++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 3567888888888866666542 5677888888887773 3333221 000 0 0 00 12344577
Q ss_pred cceecccCcccccccCC-CCcCCCCccEEeEeccCCCCc
Q 031454 77 LECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 77 L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~ 114 (159)
|++|++.++..+..+.. ....+++|++|.+.++. +..
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~ 162 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRN 162 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccc
Confidence 77777777665655543 33456777777777763 444
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=0.0022 Score=46.67 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=70.1
Q ss_pred ceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCC-cCCCC
Q 031454 22 LQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRA-LPFPH 100 (159)
Q Consensus 22 L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~-~~~ps 100 (159)
-+.+++++++++.++. ...++|+.|++++.. +..+++. ....+++|++|++.+. +|+.+.... ..+++
T Consensus 14 ~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~-l~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQ-ITKLEPG--------VFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SSEEECCSSCCSSCCS-CCCTTCSEEECCSSC-CCCCCTT--------TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CcEEEeCCCCCCccCC-CcCCCCcEEEeCCCC-ccccCHH--------HhcCCcCCCEEECCCC-CCCccChhHhCCcch
Confidence 4678888877887754 345899999998874 5555431 2456899999999987 788887654 46899
Q ss_pred ccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 101 LKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 101 Le~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
|+.|.+.+. ++..+|......+.+|..+
T Consensus 83 L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 83 LTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred hhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 999999987 6888887533334555544
No 110
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.00068 Score=61.70 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCCccceecccCccc------ccccCCCCcCCCCccEEeEeccCCCCccCCCC
Q 031454 72 IPFARLECLSLYGLEK------LRSIYPRALPFPHLKELKVDLCPELKKLPFDC 119 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~------L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~ 119 (159)
..+++|+.|.+.+++. ...++.....+++|+.|.+++|. +..+|...
T Consensus 773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l 825 (876)
T 4ecn_A 773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL 825 (876)
T ss_dssp GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC
T ss_pred hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh
Confidence 4567788888876432 22333334457888888888884 57787754
No 111
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.24 E-value=0.0013 Score=55.16 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=22.1
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcC
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDC 52 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C 52 (159)
+..+.++|....+++|++|++++++++.++. .+++|++|+++++
T Consensus 140 ~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n 183 (454)
T 1jl5_A 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNN 183 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS
T ss_pred CCCCCCCcccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCC
Confidence 3444455555556666666666644544321 1234444444444
No 112
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.23 E-value=0.00067 Score=54.50 Aligned_cols=54 Identities=20% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 72 IPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
..+++|+.|++++. ++++++. ..|.+|+.|.+.+|.+++.+|.- ....+|....
T Consensus 199 ~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l--~~l~~L~~l~ 252 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTL--EKLVALMEAS 252 (350)
T ss_dssp TTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCT--TTCCSCCEEE
T ss_pred ccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCc--hhCcChhhCc
Confidence 45678888888876 5777764 35788999999999999988851 2234555543
No 113
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.17 E-value=0.003 Score=45.67 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=71.0
Q ss_pred CceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCC-cCCC
Q 031454 21 SLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRA-LPFP 99 (159)
Q Consensus 21 ~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~-~~~p 99 (159)
..+.|++++++++.++. ...++|++|++++. .+..+.+. ....+++|++|++.+. +++.+.... ..++
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N-~i~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDN-QITKLEPG--------VFDRLTQLTRLDLDNN-QLTVLPAGVFDKLT 78 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CCCTTCSEEECCSS-CCCCCCTT--------TTTTCTTCSEEECCSS-CCCCCCTTTTTTCT
T ss_pred CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCC-cCCccChh--------hhcCcccCCEEECCCC-CcCccChhhccCCC
Confidence 45788888877887753 34589999999887 45555431 2456899999999977 588877654 4789
Q ss_pred CccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 100 HLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 100 sLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
+|+.|.+.+. +++++|......+.+|..+
T Consensus 79 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 79 QLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 9999999988 6888887544444556555
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.16 E-value=0.0022 Score=55.64 Aligned_cols=101 Identities=17% Similarity=0.081 Sum_probs=64.2
Q ss_pred CccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCccccccccccc----------ccCCCCCCC
Q 031454 6 AGEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEKLGG----------QMQNRIPFA 75 (159)
Q Consensus 6 ~~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~----------~~~~~~~fp 75 (159)
.+..+.++|... +++|++|++++++++.++ ..+++|++|+++++ .+..++....... .... .++
T Consensus 67 s~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~l~~~L~~L~Ls~N~l~~lp~--~l~ 140 (571)
T 3cvr_A 67 NRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPELPASLKHLDVDNNQLTMLPE--LPA 140 (571)
T ss_dssp CSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC--CCT
T ss_pred CCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcchhhcCCCEEECCCCcCCCCCC--cCc
Confidence 344555666533 588999999887788776 67889999999887 4554443110000 0111 456
Q ss_pred ccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 76 RLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 76 ~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
+|+.|++.+.. ++.++. .+++|+.|.+.++ ++..+|.
T Consensus 141 ~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N-~L~~lp~ 177 (571)
T 3cvr_A 141 LLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN-QLTFLPE 177 (571)
T ss_dssp TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSCCCC
T ss_pred cccEEeCCCCc-cCcCCC---cCCCcCEEECCCC-CCCCcch
Confidence 77777777653 555443 5678888888888 4777766
No 115
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.16 E-value=0.00071 Score=53.57 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=19.6
Q ss_pred CCCCccceecccCcccccccCCCCcCCCCccEEeEecc
Q 031454 72 IPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLC 109 (159)
Q Consensus 72 ~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~C 109 (159)
..+++|++|++.+..--..++.....+++|+.|.+.++
T Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 34566666666654322223333334566666666665
No 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.13 E-value=0.00049 Score=58.10 Aligned_cols=39 Identities=10% Similarity=0.005 Sum_probs=17.3
Q ss_pred CCccceecccCcccccccCC-CCcCCCCccEEeEeccCCCCc
Q 031454 74 FARLECLSLYGLEKLRSIYP-RALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~~i~~-~~~~~psLe~L~i~~Cp~L~~ 114 (159)
|++|+.|.+.++. +..+.. ....+++|+.|.+.++ ++..
T Consensus 119 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 158 (487)
T 3oja_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDT 158 (487)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCE
T ss_pred cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCC
Confidence 4455555554432 222211 2223556666666555 3443
No 117
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.12 E-value=0.0013 Score=58.41 Aligned_cols=38 Identities=8% Similarity=0.220 Sum_probs=22.3
Q ss_pred CCCCCCceEEEEecCCcCC-cccccCCCCcceEEEEcCc
Q 031454 16 TNGFFSLQRVSIGRSKLRH-VTWLILAPNLKRISMHDCH 53 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~-l~~l~~Lp~Le~L~I~~C~ 53 (159)
...+++|++|+++++++.. ++.+..+++|++|++++|.
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~ 234 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK 234 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence 3556666666666633433 2335566677777776664
No 118
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.08 E-value=0.00054 Score=57.85 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred CCCCCceEEEEecCCcCCcc--ccc-CCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCC
Q 031454 17 NGFFSLQRVSIGRSKLRHVT--WLI-LAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYP 93 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~--~l~-~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~ 93 (159)
+.+++|++|+++++++.... .+. .+++|++|+++++. +..++. ...+++|+.|+++++ +++.++.
T Consensus 141 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~----------~~~l~~L~~L~Ls~N-~l~~~~~ 208 (487)
T 3oja_A 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG----------QVVFAKLKTLDLSSN-KLAFMGP 208 (487)
T ss_dssp GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC----------CCCCTTCCEEECCSS-CCCEECG
T ss_pred cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc----------cccCCCCCEEECCCC-CCCCCCH
Confidence 45789999999987777642 233 68999999998885 444422 233667777777664 3555544
Q ss_pred CCcCCCCccEEeEeccCCCCccCCC
Q 031454 94 RALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 94 ~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
....+++|+.|.+.++ ++.++|..
T Consensus 209 ~~~~l~~L~~L~Ls~N-~l~~lp~~ 232 (487)
T 3oja_A 209 EFQSAAGVTWISLRNN-KLVLIEKA 232 (487)
T ss_dssp GGGGGTTCSEEECTTS-CCCEECTT
T ss_pred hHcCCCCccEEEecCC-cCcccchh
Confidence 4445666777777665 46666654
No 119
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.03 E-value=0.00019 Score=56.70 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCCCceEEEEec-CCcCC--ccc-ccCCCCcceEEEEcCcCCc
Q 031454 18 GFFSLQRVSIGR-SKLRH--VTW-LILAPNLKRISMHDCHYLE 56 (159)
Q Consensus 18 ~~~~L~~L~I~~-~~l~~--l~~-l~~Lp~Le~L~I~~C~~l~ 56 (159)
.+++|++|++++ ..++. +.. +..+++|++|++++|..+.
T Consensus 140 ~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 367777777777 45553 222 4456667777776664443
No 120
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.01 E-value=0.00023 Score=53.11 Aligned_cols=72 Identities=11% Similarity=0.151 Sum_probs=53.2
Q ss_pred cccCCCCCCCceEEEEec-CCcCCc--ccccCC----CCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccC
Q 031454 12 RILKTNGFFSLQRVSIGR-SKLRHV--TWLILA----PNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYG 84 (159)
Q Consensus 12 ~~p~~~~~~~L~~L~I~~-~~l~~l--~~l~~L----p~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 84 (159)
++.....+++|++|++++ ..++.- ..+..+ ++|++|+|++|.++.+-.- .....+++|++|.+.+
T Consensus 77 GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl--------~~L~~~~~L~~L~L~~ 148 (176)
T 3e4g_A 77 GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI--------IALHHFRNLKYLFLSD 148 (176)
T ss_dssp GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH--------HHGGGCTTCCEEEEES
T ss_pred HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH--------HHHhcCCCCCEEECCC
Confidence 444456799999999999 888752 123443 4799999999998875321 1234589999999999
Q ss_pred ccccccc
Q 031454 85 LEKLRSI 91 (159)
Q Consensus 85 ~~~L~~i 91 (159)
|+.++..
T Consensus 149 c~~Itd~ 155 (176)
T 3e4g_A 149 LPGVKEK 155 (176)
T ss_dssp CTTCCCH
T ss_pred CCCCCch
Confidence 9998763
No 121
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=96.94 E-value=0.0019 Score=58.78 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=32.4
Q ss_pred CCCCCccceecccCcccccccCCCCcCCCCccEEeEeccCCCCccC
Q 031454 71 RIPFARLECLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLP 116 (159)
Q Consensus 71 ~~~fp~L~~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP 116 (159)
...+++|+.|++.++.- ..++.. .+++|+.|++++|+ +..+.
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~--l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEK--LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSC--CCSSSCEEECCSCT-TCEEE
T ss_pred HhcCCCCCEEECCCCCC-CccCHh--hcCCCCEEECCCCC-CCccC
Confidence 45579999999999854 777654 34899999999997 55544
No 122
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=96.93 E-value=0.0019 Score=56.13 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=56.0
Q ss_pred CceEEEEecCCcCCccc-cc--CCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcc------ccccc
Q 031454 21 SLQRVSIGRSKLRHVTW-LI--LAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLE------KLRSI 91 (159)
Q Consensus 21 ~L~~L~I~~~~l~~l~~-l~--~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~------~L~~i 91 (159)
+|++|++++++++.++. +. .+++|++|+++++. +..++. ....+++|+.|++.+.. -...+
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~---------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT---------QPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC---------GGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcCh---------hhhcCCCCCEEECCCCcccccCcccccC
Confidence 88888888866776653 44 78888998888874 444432 12346777777775433 12233
Q ss_pred CCCCcCCCCccEEeEeccCCCCccCCC
Q 031454 92 YPRALPFPHLKELKVDLCPELKKLPFD 118 (159)
Q Consensus 92 ~~~~~~~psLe~L~i~~Cp~L~~lP~~ 118 (159)
+.....+++|+.|.+.+|. +..+|..
T Consensus 559 p~~l~~l~~L~~L~Ls~N~-l~~ip~~ 584 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSND-IRKVNEK 584 (636)
T ss_dssp CTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred hHHHhcCCCCCEEECCCCc-CCccCHh
Confidence 3344457777777777774 5677765
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.82 E-value=0.0043 Score=53.85 Aligned_cols=101 Identities=23% Similarity=0.225 Sum_probs=64.3
Q ss_pred ccccccccCCCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccccccc-cc-----c-ccCC-CCCCCccc
Q 031454 7 GEEVKRILKTNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIVSLEK-LG-----G-QMQN-RIPFARLE 78 (159)
Q Consensus 7 ~~~~~~~p~~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~~~~~-~~-----~-~~~~-~~~fp~L~ 78 (159)
+..+.++| ..+++|++|++++++++.++.+. .+|++|+++++. +..++..-. .. . .... ...+++|+
T Consensus 89 ~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~--~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~ 163 (571)
T 3cvr_A 89 QNALISLP--ELPASLEYLDACDNRLSTLPELP--ASLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLPELPTSLE 163 (571)
T ss_dssp SSCCSCCC--CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCCCcccc--cccCCCCEEEccCCCCCCcchhh--cCCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCCCcCCCcC
Confidence 34455666 55788888888887677665422 278888887763 444432000 00 0 0000 11467999
Q ss_pred eecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 79 CLSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 79 ~L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
.|++.++ +++.++. .. ++|+.|.+.++ ++..+|.
T Consensus 164 ~L~Ls~N-~L~~lp~--l~-~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 164 VLSVRNN-QLTFLPE--LP-ESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp EEECCSS-CCSCCCC--CC-TTCCEEECCSS-CCSSCCC
T ss_pred EEECCCC-CCCCcch--hh-CCCCEEECcCC-CCCchhh
Confidence 9999987 4666655 22 89999999998 6888887
No 124
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=96.78 E-value=0.00049 Score=54.55 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=53.9
Q ss_pred ceEEEEecCCcCCc--ccccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccccccCCCCcCCC
Q 031454 22 LQRVSIGRSKLRHV--TWLILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSIYPRALPFP 99 (159)
Q Consensus 22 L~~L~I~~~~l~~l--~~l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~~~~~~~p 99 (159)
|++|++++++++.. ..+..+++|+.|+++++.- ...++ ....+++|++|++.++.--..++.....++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 268 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-AFDLG---------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE-CCBGG---------GCCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce-eeecC---------cccccCCCCEEECcCCcccCcCChHHhcCc
Confidence 88999888666543 2367788899998888743 22221 124467888888877643324444445677
Q ss_pred CccEEeEeccCCCC-ccCC
Q 031454 100 HLKELKVDLCPELK-KLPF 117 (159)
Q Consensus 100 sLe~L~i~~Cp~L~-~lP~ 117 (159)
+|+.|.+.++. +. .+|.
T Consensus 269 ~L~~L~Ls~N~-l~~~ip~ 286 (313)
T 1ogq_A 269 FLHSLNVSFNN-LCGEIPQ 286 (313)
T ss_dssp TCCEEECCSSE-EEEECCC
T ss_pred CCCEEECcCCc-ccccCCC
Confidence 88888887774 43 4554
No 125
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=96.77 E-value=0.0014 Score=58.07 Aligned_cols=101 Identities=14% Similarity=0.010 Sum_probs=57.4
Q ss_pred CCCCCceEEEEecCCcCC-cc-cccCCCCcceEEEEcCcCCccccccccc-c--c-------cc-----CCCCCCCccce
Q 031454 17 NGFFSLQRVSIGRSKLRH-VT-WLILAPNLKRISMHDCHYLEEIVSLEKL-G--G-------QM-----QNRIPFARLEC 79 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~-l~-~l~~Lp~Le~L~I~~C~~l~~l~~~~~~-~--~-------~~-----~~~~~fp~L~~ 79 (159)
..+++|++|+++++++.. ++ .+..+++|++|++++|.--..++..-.. . + .. .....+++|+.
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 446778888887754542 22 3566777777777777433222211000 0 0 00 12344677778
Q ss_pred ecccCcccccccCCCCcCCCCccEEeEeccCCCCccCC
Q 031454 80 LSLYGLEKLRSIYPRALPFPHLKELKVDLCPELKKLPF 117 (159)
Q Consensus 80 L~l~~~~~L~~i~~~~~~~psLe~L~i~~Cp~L~~lP~ 117 (159)
|++.++.--..++.....+++|+.|++.+|+--..+|.
T Consensus 519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 87777754445555455677888888887754445554
No 126
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.75 E-value=0.0012 Score=52.06 Aligned_cols=48 Identities=8% Similarity=0.121 Sum_probs=32.6
Q ss_pred ccccccC--CCCCCCceEEEEecCCcCC---c---ccccCCCCcceEEEEcCcCCcc
Q 031454 9 EVKRILK--TNGFFSLQRVSIGRSKLRH---V---TWLILAPNLKRISMHDCHYLEE 57 (159)
Q Consensus 9 ~~~~~p~--~~~~~~L~~L~I~~~~l~~---l---~~l~~Lp~Le~L~I~~C~~l~~ 57 (159)
.+...+. -..+++|++|+++++++.. + .....+++|++|.+++|. +..
T Consensus 156 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 211 (310)
T 4glp_A 156 HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-MET 211 (310)
T ss_dssp SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCC
T ss_pred CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCc
Confidence 3344443 3378999999999965543 1 234678999999999884 443
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.75 E-value=3.4e-05 Score=57.21 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCCCCceEEEEecCCcCCcccccCCCCcceEEEEcCcCCcccc
Q 031454 16 TNGFFSLQRVSIGRSKLRHVTWLILAPNLKRISMHDCHYLEEIV 59 (159)
Q Consensus 16 ~~~~~~L~~L~I~~~~l~~l~~l~~Lp~Le~L~I~~C~~l~~l~ 59 (159)
...+++|++|++++++++.++.+..+++|+.|++++|. +..++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~-l~~l~ 86 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL-IKKIE 86 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEE-ECSCS
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCC-ccccc
Confidence 34578899999988667777667778899999998873 44443
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.58 E-value=4.6e-05 Score=56.47 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=40.7
Q ss_pred cccccCCCCCCCceEEEEecCCcCCccc-ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcccc
Q 031454 10 VKRILKTNGFFSLQRVSIGRSKLRHVTW-LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKL 88 (159)
Q Consensus 10 ~~~~p~~~~~~~L~~L~I~~~~l~~l~~-l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L 88 (159)
+..+|....+++|++|++++++++.++. ...+++|+.|+++++ .+..++. ...+++|+.|++.+.. +
T Consensus 60 l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~----------~~~l~~L~~L~l~~N~-i 127 (198)
T 1ds9_A 60 IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG----------IEKLVNLRVLYMSNNK-I 127 (198)
T ss_dssp ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH----------HHHHHHSSEEEESEEE-C
T ss_pred CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc----------cccCCCCCEEECCCCc-C
Confidence 3334433345555666655544444432 233455566655555 2333321 1234555555555431 2
Q ss_pred cccCC--CCcCCCCccEEeEeccC
Q 031454 89 RSIYP--RALPFPHLKELKVDLCP 110 (159)
Q Consensus 89 ~~i~~--~~~~~psLe~L~i~~Cp 110 (159)
+.+.. ....+++|+.|.+.+++
T Consensus 128 ~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 128 TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CchhHHHHHhcCCCCCEEEecCCc
Confidence 22211 12245666666666653
No 129
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.56 E-value=0.0037 Score=49.24 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=70.4
Q ss_pred CCCCCceEEEEecCCcCCccc-----ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCccccccc
Q 031454 17 NGFFSLQRVSIGRSKLRHVTW-----LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLEKLRSI 91 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~~l~~-----l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i 91 (159)
..+++|++|++++++++.+.. ...+++|++|+++++. +...++.. ....+++|+.|++.++. ++.+
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~i 268 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP-------SCDWPSQLNSLNLSFTG-LKQV 268 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS-------CCCCCTTCCEEECTTSC-CSSC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh-------hhhhcCCCCEEECCCCc-cChh
Confidence 678999999999977875432 2478999999999884 44433111 23346899999998863 6666
Q ss_pred CCCCcCCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 92 YPRALPFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 92 ~~~~~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
+.... ++|+.|+++++ +++.+|. ....+.|+.+.
T Consensus 269 p~~~~--~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~ 302 (312)
T 1wwl_A 269 PKGLP--AKLSVLDLSYN-RLDRNPS--PDELPQVGNLS 302 (312)
T ss_dssp CSSCC--SEEEEEECCSS-CCCSCCC--TTTSCEEEEEE
T ss_pred hhhcc--CCceEEECCCC-CCCCChh--HhhCCCCCEEe
Confidence 54322 89999999998 6888876 23346666654
No 130
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.51 E-value=0.012 Score=52.68 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=56.5
Q ss_pred CCCCCCceEEEEec-CCcCCcc--cccCCCCcceEEEEcCcCCccccccc--c---ccc---------c-c-C--CCCCC
Q 031454 16 TNGFFSLQRVSIGR-SKLRHVT--WLILAPNLKRISMHDCHYLEEIVSLE--K---LGG---------Q-M-Q--NRIPF 74 (159)
Q Consensus 16 ~~~~~~L~~L~I~~-~~l~~l~--~l~~Lp~Le~L~I~~C~~l~~l~~~~--~---~~~---------~-~-~--~~~~f 74 (159)
-..+++|++|++++ .....+. .+..+++|++|+++++. +..+.+.. . ... + . . ....+
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 34577777777777 4444432 25667777777777663 33221110 0 000 0 0 1 14567
Q ss_pred CccceecccCcccccccCC--CCcCCCCccEEeEeccCCCCcc
Q 031454 75 ARLECLSLYGLEKLRSIYP--RALPFPHLKELKVDLCPELKKL 115 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~--~~~~~psLe~L~i~~Cp~L~~l 115 (159)
++|+.|++.++. ++.+.. .-..+++|+.|.+.++. +..+
T Consensus 123 ~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~ 163 (844)
T 3j0a_A 123 KALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLV 163 (844)
T ss_dssp SSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC-CCCC
T ss_pred CCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc-CCee
Confidence 899999998764 333322 23568999999999973 5443
No 131
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=96.47 E-value=0.0034 Score=49.28 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=22.3
Q ss_pred CCCccceecccCcccccccCCC----CcCCCCccEEeEeccCCCCcc
Q 031454 73 PFARLECLSLYGLEKLRSIYPR----ALPFPHLKELKVDLCPELKKL 115 (159)
Q Consensus 73 ~fp~L~~L~l~~~~~L~~i~~~----~~~~psLe~L~i~~Cp~L~~l 115 (159)
.+++|++|.+.++ +++.+... ...+++|++|.++++. +..+
T Consensus 195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 239 (310)
T 4glp_A 195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRAT 239 (310)
T ss_dssp SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCC
T ss_pred cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCcc
Confidence 4566666666654 23332211 1245777777777773 5554
No 132
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=96.35 E-value=0.0055 Score=48.20 Aligned_cols=16 Identities=19% Similarity=0.239 Sum_probs=9.1
Q ss_pred CCCccEEeEeccCCCCc
Q 031454 98 FPHLKELKVDLCPELKK 114 (159)
Q Consensus 98 ~psLe~L~i~~Cp~L~~ 114 (159)
+++|+.|.+.++ ++..
T Consensus 227 l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 227 RVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp TCCCSEEECTTS-CCCS
T ss_pred CCCCCEEECCCC-cCCc
Confidence 456666666665 3444
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.88 E-value=0.034 Score=43.92 Aligned_cols=98 Identities=15% Similarity=0.081 Sum_probs=58.4
Q ss_pred CCCceEEEEecCCcCCccc--ccCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccc-eecccCcccccccCCCC
Q 031454 19 FFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLE-CLSLYGLEKLRSIYPRA 95 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~-~L~l~~~~~L~~i~~~~ 95 (159)
.++|+.|++.+++++.+.. +..+++|++|++.+ +++.|... .....++|+ .+.+.+ +++.|....
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~--------aF~~~~~L~~~l~l~~--~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH--NLKTIGQR--------VFSNCGRLAGTLELPA--SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT--TCCEECTT--------TTTTCTTCCEEEEECT--TCCEECTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc--ccceehHH--------HhhCChhccEEEEEcc--cceEEchhh
Confidence 5778888887755766543 45677788887765 35555421 223346677 777766 677776533
Q ss_pred -cCCCCccEEeEeccCCCCccCCCCCCCCCCceEE
Q 031454 96 -LPFPHLKELKVDLCPELKKLPFDCTSGLERKLII 129 (159)
Q Consensus 96 -~~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v 129 (159)
..+++|+.|.+.+- +++.++.+.=..+.+|+.+
T Consensus 293 F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 293 FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred hhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence 34677777776433 5666665433333445443
No 134
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.80 E-value=0.015 Score=47.51 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=21.8
Q ss_pred CCCCCceEEEEecCCcC--Ccc---------cccCCCCcceEEEEcCc
Q 031454 17 NGFFSLQRVSIGRSKLR--HVT---------WLILAPNLKRISMHDCH 53 (159)
Q Consensus 17 ~~~~~L~~L~I~~~~l~--~l~---------~l~~Lp~Le~L~I~~C~ 53 (159)
..|++|+.|.|.+.... .+. .+..+|+|+.|.|++|.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 35778888887651111 111 13456788888887763
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.69 E-value=0.0043 Score=52.45 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=21.4
Q ss_pred CCCCceEEEEecCCcCCc--cccc-CCCCcceEEEEcCcCCc
Q 031454 18 GFFSLQRVSIGRSKLRHV--TWLI-LAPNLKRISMHDCHYLE 56 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l--~~l~-~Lp~Le~L~I~~C~~l~ 56 (159)
.+++|++|+++++.+... ..+. .+++|++|++.+|..+.
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 355666666666323321 1122 46777777777775443
No 136
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.34 E-value=0.0027 Score=53.70 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=27.5
Q ss_pred CCCCceEEEEec-CCcCCcc-----c-----------ccCCCCcceEEEEcCc
Q 031454 18 GFFSLQRVSIGR-SKLRHVT-----W-----------LILAPNLKRISMHDCH 53 (159)
Q Consensus 18 ~~~~L~~L~I~~-~~l~~l~-----~-----------l~~Lp~Le~L~I~~C~ 53 (159)
.|++|++|.+++ +.+.... | ...+++|++|++++|.
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 116 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV 116 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE
Confidence 478999999999 7665432 1 2357899999999885
No 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=94.16 E-value=0.011 Score=47.54 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=5.6
Q ss_pred CCCccEEeEecc
Q 031454 98 FPHLKELKVDLC 109 (159)
Q Consensus 98 ~psLe~L~i~~C 109 (159)
+++|+.|.+.+|
T Consensus 302 l~~L~~L~l~~N 313 (386)
T 2ca6_A 302 MPDLLFLELNGN 313 (386)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCceEEEccCC
Confidence 344444444444
No 138
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.02 E-value=0.025 Score=46.16 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=44.4
Q ss_pred CCCCceEEEEecCCcCCc--ccc--cCCCCcceEEEEcCcCCcccc-cccccccccCCCCCCCccceecccCcccccccC
Q 031454 18 GFFSLQRVSIGRSKLRHV--TWL--ILAPNLKRISMHDCHYLEEIV-SLEKLGGQMQNRIPFARLECLSLYGLEKLRSIY 92 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l--~~l--~~Lp~Le~L~I~~C~~l~~l~-~~~~~~~~~~~~~~fp~L~~L~l~~~~~L~~i~ 92 (159)
..++|++|.+...++..- ..+ ..+|+|++|++..+.+...-- ...... .......||+|+.|.+.+|.--....
T Consensus 191 ~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~i~~~~~ 269 (362)
T 2ra8_A 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAEEQNVVV 269 (362)
T ss_dssp BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCTTHHHHH
T ss_pred cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCCCchHHH
Confidence 378999999987445321 112 368999999986432210000 000000 00112357788888776654321110
Q ss_pred C---CCcCCCCccEEeEec
Q 031454 93 P---RALPFPHLKELKVDL 108 (159)
Q Consensus 93 ~---~~~~~psLe~L~i~~ 108 (159)
. ....+|+|+.|.++.
T Consensus 270 ~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHCSSGGGCSEEECCS
T ss_pred HHHHhCccCCCCCEEECCC
Confidence 0 012355666666643
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.02 E-value=0.021 Score=48.20 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=9.7
Q ss_pred cCCCCcceEEEEcCc
Q 031454 39 ILAPNLKRISMHDCH 53 (159)
Q Consensus 39 ~~Lp~Le~L~I~~C~ 53 (159)
..+++|++|++++|.
T Consensus 290 ~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 290 PFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGCCEEEETTCC
T ss_pred hhcCCCcEEecCCCc
Confidence 446667777776665
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=93.45 E-value=0.011 Score=49.88 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=52.2
Q ss_pred CCCceEEEEec----CCcCCcc-------cccCCCCcceEEEEcCcC-Cc---------------ccccccc-ccc-cc-
Q 031454 19 FFSLQRVSIGR----SKLRHVT-------WLILAPNLKRISMHDCHY-LE---------------EIVSLEK-LGG-QM- 68 (159)
Q Consensus 19 ~~~L~~L~I~~----~~l~~l~-------~l~~Lp~Le~L~I~~C~~-l~---------------~l~~~~~-~~~-~~- 68 (159)
+++|++|++++ ++++..+ .+..+++|++|.++.|.+ +. .+--... ... ..
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 67888888873 4554421 134577888888876653 11 1100000 000 00
Q ss_pred CCCCCCCccceecccCcccccc--cCCCCcCCCCccEEeEeccCCCCc
Q 031454 69 QNRIPFARLECLSLYGLEKLRS--IYPRALPFPHLKELKVDLCPELKK 114 (159)
Q Consensus 69 ~~~~~fp~L~~L~l~~~~~L~~--i~~~~~~~psLe~L~i~~Cp~L~~ 114 (159)
.-...+++|++|++.+|+ +.. +......+++|+.|.+++|. +..
T Consensus 482 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 012346889999999888 432 11112357899999999996 543
No 141
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=93.08 E-value=0.031 Score=44.95 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=7.6
Q ss_pred CCCccEEeEecc
Q 031454 98 FPHLKELKVDLC 109 (159)
Q Consensus 98 ~psLe~L~i~~C 109 (159)
+++|+.|.+.+|
T Consensus 273 ~~~L~~L~L~~n 284 (386)
T 2ca6_A 273 NIGLQTLRLQYN 284 (386)
T ss_dssp SCCCCEEECCSS
T ss_pred CCCeEEEECcCC
Confidence 566666666666
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=93.02 E-value=0.087 Score=41.38 Aligned_cols=60 Identities=23% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCCceEEEEecCCcCCcccc----cCCCCcceEEEEcCcCCcccccccccccccCCCCCCCccceecccCcc
Q 031454 18 GFFSLQRVSIGRSKLRHVTWL----ILAPNLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLYGLE 86 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~l----~~Lp~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 86 (159)
.+++|+.|+++++++..+..+ ..+++|+.|++++. ++..+.... ....+ +|+.|.+.+-|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~-------~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD-------KIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG-------GGTTS-CCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh-------hcccC-CcceEEccCCc
Confidence 478999999999878876543 47899999998765 344331111 12223 78888888766
No 143
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=92.51 E-value=0.019 Score=46.93 Aligned_cols=11 Identities=0% Similarity=0.135 Sum_probs=6.2
Q ss_pred CCCceEEEEec
Q 031454 19 FFSLQRVSIGR 29 (159)
Q Consensus 19 ~~~L~~L~I~~ 29 (159)
+++|++|++++
T Consensus 169 ~~~L~~L~L~~ 179 (461)
T 1z7x_W 169 KPDFKELTVSN 179 (461)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEECcC
Confidence 35555665555
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=91.73 E-value=0.99 Score=35.28 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=13.4
Q ss_pred CCCcc-EEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 98 FPHLK-ELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 98 ~psLe-~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
+++|+ .+.+.+ +++.++.+.=..+.+|..+.
T Consensus 272 ~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 272 CGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTTCCEEEEECT--TCCEECTTTTTTCTTEEEEE
T ss_pred ChhccEEEEEcc--cceEEchhhhhCCccCCEEE
Confidence 34444 444444 44444433222234555554
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=91.09 E-value=0.031 Score=45.64 Aligned_cols=36 Identities=22% Similarity=0.116 Sum_probs=21.5
Q ss_pred CCccceecccCccccc-----ccCCCCcCCCCccEEeEeccC
Q 031454 74 FARLECLSLYGLEKLR-----SIYPRALPFPHLKELKVDLCP 110 (159)
Q Consensus 74 fp~L~~L~l~~~~~L~-----~i~~~~~~~psLe~L~i~~Cp 110 (159)
.++|++|++.++ ++. .+......+++|++|.+++|+
T Consensus 369 ~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 369 GSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 457777777776 333 222222346778888877773
No 146
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=90.73 E-value=0.091 Score=41.96 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=22.2
Q ss_pred CCCceEEEEecCCcCCccc------ccCCC-CcceEEEEcC
Q 031454 19 FFSLQRVSIGRSKLRHVTW------LILAP-NLKRISMHDC 52 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~~------l~~Lp-~Le~L~I~~C 52 (159)
.++|++|+++++++..... +..++ +|++|++++|
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN 61 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC
Confidence 3447888887755665432 34566 7888877777
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=86.97 E-value=3.5 Score=33.60 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=6.5
Q ss_pred cCCCCcceEEEE
Q 031454 39 ILAPNLKRISMH 50 (159)
Q Consensus 39 ~~Lp~Le~L~I~ 50 (159)
..+++|+.+++.
T Consensus 177 ~~c~~L~~l~l~ 188 (401)
T 4fdw_A 177 YYCYNLKKADLS 188 (401)
T ss_dssp TTCTTCCEEECT
T ss_pred hCcccCCeeecC
Confidence 345556655554
No 148
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=86.82 E-value=0.11 Score=41.54 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=23.5
Q ss_pred CCceEEEEecCCcCCccc------ccCC-CCcceEEEEcCc
Q 031454 20 FSLQRVSIGRSKLRHVTW------LILA-PNLKRISMHDCH 53 (159)
Q Consensus 20 ~~L~~L~I~~~~l~~l~~------l~~L-p~Le~L~I~~C~ 53 (159)
++|++|++++++++.... +... ++|++|++++|.
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 388888888876765431 2345 488888888874
No 149
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=81.91 E-value=1.5 Score=30.10 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=28.7
Q ss_pred cccCCCCCCCceEEEEecCCcCCccc--ccCCCCcceEEEEcC
Q 031454 12 RILKTNGFFSLQRVSIGRSKLRHVTW--LILAPNLKRISMHDC 52 (159)
Q Consensus 12 ~~p~~~~~~~L~~L~I~~~~l~~l~~--l~~Lp~Le~L~I~~C 52 (159)
++|.. -..+|++|++++++|+.++. +..+++|+.|+|.+-
T Consensus 24 ~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 24 SLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 44432 34579999998888888754 466888888888654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=75.56 E-value=1.4 Score=34.31 Aligned_cols=64 Identities=13% Similarity=0.035 Sum_probs=40.3
Q ss_pred CCCCceEEEEecCCcCCcccccCCC--CcceEEEEcCcCCcccccccccccccCCCCCCCccceeccc
Q 031454 18 GFFSLQRVSIGRSKLRHVTWLILAP--NLKRISMHDCHYLEEIVSLEKLGGQMQNRIPFARLECLSLY 83 (159)
Q Consensus 18 ~~~~L~~L~I~~~~l~~l~~l~~Lp--~Le~L~I~~C~~l~~l~~~~~~~~~~~~~~~fp~L~~L~l~ 83 (159)
.+++|+.|++++++++.+..+..+. +|++|.+++.+-...++...... ..-...||+|+.|+=.
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~--~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI--SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH--HHHHHHCTTCCEESSC
T ss_pred hCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHH--HHHHHHCcccCeECCc
Confidence 6999999999998888775555555 89999998876433332110000 0012446777776543
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=72.74 E-value=0.4 Score=38.91 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=19.8
Q ss_pred CCCceEEEEecCCcCCcc--cc-----cCCCCcceEEEEcCc
Q 031454 19 FFSLQRVSIGRSKLRHVT--WL-----ILAPNLKRISMHDCH 53 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~--~l-----~~Lp~Le~L~I~~C~ 53 (159)
+++|++|+++++++.... .+ ...++|++|++++|.
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC
Confidence 446777777775554321 01 234667777777663
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=54.06 E-value=84 Score=25.22 Aligned_cols=11 Identities=18% Similarity=0.449 Sum_probs=5.6
Q ss_pred CCCCcceEEEE
Q 031454 40 LAPNLKRISMH 50 (159)
Q Consensus 40 ~Lp~Le~L~I~ 50 (159)
.+++|+.+.+.
T Consensus 269 ~c~~L~~l~l~ 279 (401)
T 4fdw_A 269 YCPELAEVTTY 279 (401)
T ss_dssp TCTTCCEEEEE
T ss_pred CCCCCCEEEeC
Confidence 34555555553
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=47.30 E-value=1e+02 Score=24.19 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=25.0
Q ss_pred CccceecccCcccccccCCCCc-CCCCccEEeEeccCCCCccCCCCCCCCCCceEEe
Q 031454 75 ARLECLSLYGLEKLRSIYPRAL-PFPHLKELKVDLCPELKKLPFDCTSGLERKLIIK 130 (159)
Q Consensus 75 p~L~~L~l~~~~~L~~i~~~~~-~~psLe~L~i~~Cp~L~~lP~~~~~~~~~l~~v~ 130 (159)
.+|+.+.|-+ +++.|..... .+.+|+.+.|.+ +++++....=..+.+|..|.
T Consensus 311 ~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 311 ISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEE
T ss_pred CCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEE
Confidence 5566666542 3555544322 346677776642 34444433222234555443
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=35.48 E-value=1.3e+02 Score=23.49 Aligned_cols=12 Identities=8% Similarity=0.149 Sum_probs=7.2
Q ss_pred cCCCCcceEEEE
Q 031454 39 ILAPNLKRISMH 50 (159)
Q Consensus 39 ~~Lp~Le~L~I~ 50 (159)
....+|+.+.+.
T Consensus 294 ~~~~~L~~i~l~ 305 (394)
T 4fs7_A 294 YGCSSLTEVKLL 305 (394)
T ss_dssp TTCTTCCEEEEC
T ss_pred cccccccccccc
Confidence 345667766663
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=26.01 E-value=1.7e+02 Score=22.49 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=14.4
Q ss_pred CCCceEEEEecCCcCCcc--cccCCCCcceEEE
Q 031454 19 FFSLQRVSIGRSKLRHVT--WLILAPNLKRISM 49 (159)
Q Consensus 19 ~~~L~~L~I~~~~l~~l~--~l~~Lp~Le~L~I 49 (159)
..+|+.+.+.+ .++.+. ......+|+.+.+
T Consensus 239 ~~~L~~i~lp~-~v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 239 MKALDEIAIPK-NVTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp CSSCCEEEECT-TCCEECTTTTTTCTTCCEEEE
T ss_pred CccceEEEcCC-CccEeCccccceeehhccccc
Confidence 45666666654 122221 1234555666655
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=21.90 E-value=2.8e+02 Score=21.50 Aligned_cols=11 Identities=9% Similarity=0.060 Sum_probs=6.7
Q ss_pred CCCceEEEEec
Q 031454 19 FFSLQRVSIGR 29 (159)
Q Consensus 19 ~~~L~~L~I~~ 29 (159)
..+|+.+.+.+
T Consensus 229 ~~~l~~i~ip~ 239 (394)
T 4fs7_A 229 KTGVKNIIIPD 239 (394)
T ss_dssp TCCCCEEEECT
T ss_pred cCCCceEEECC
Confidence 45677776654
Done!