BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031455
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UX3|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
pdb|3UX3|B Chain B, Crystal Structure Of Domain-Swapped Fam96a Minor Dimer
Length = 130
Score = 144 bits (362), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 94/118 (79%), Gaps = 3/118 (2%)
Query: 40 EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
EV+D +R I+DPE P +LEEL+V++E +EV ++E V + FTPTV HCS+AT+IGL
Sbjct: 12 EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 97 CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
CLRVKL R LP + K++I ++ GTH+TE +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct: 72 CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 129
>pdb|3UX2|A Chain A, Crystal Structure Of Domain-Swapped Fam96a Major Dimer
Length = 130
Score = 142 bits (358), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 93/118 (78%), Gaps = 3/118 (2%)
Query: 40 EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGL 96
EV+D +R I+DPE P +LEEL+V++E +EV ++E V + FTPTV HCS+AT+IGL
Sbjct: 12 EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGL 71
Query: 97 CLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
CLRVKL R LP + K++I ++ GTH+TE +NKQ+NDKERVAAA ENPNL ++V++C+
Sbjct: 72 CLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAXENPNLREIVEQCV 129
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 36 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 84
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 42 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 39 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 87
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 46 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 94
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 76 KVKIPVAIMELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 124
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 52 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 100
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 49 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 111 KVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPTF 158
K+ + + T N + D+ + A++++P+LV ++ CL+PT
Sbjct: 67 KIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTI 114
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 42 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 44 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 42 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 42 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 43 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 91
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 42 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 44 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 44 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 45 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 44 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 67 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 115
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 49 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 44 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 45 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 45 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 48 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 96
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 46 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 94
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 43 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 91
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 49 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 42 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 45 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 111 KVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
K+ + + T N + D+ + A++++P+LV ++ CL+PT
Sbjct: 44 KIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT 90
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 109 RFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLAPT 157
+ K+ + + AT NK++ D+ V A+++NP++ ++ CL T
Sbjct: 49 KVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
>pdb|2RAA|A Chain A, Crystal Structure Of Pyruvate Oxidoreductase Subunit Porc
(Ec 1.2.7.1) (Tm0015) From Thermotoga Maritima At 2.12 A
Resolution
Length = 204
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 120 THATEAAVNKQLNDKERVAAALENPNLVDMVDECL 154
T A A N+ ++ RV +A+ENP++V ++DE L
Sbjct: 61 TGAPXRAFNRIGDEYIRVRSAVENPDVVVVIDETL 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,596,508
Number of Sequences: 62578
Number of extensions: 168256
Number of successful extensions: 512
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 36
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)