Query 031455
Match_columns 159
No_of_seqs 105 out of 1059
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 23:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ux2_A MIP18 family protein FA 100.0 4.4E-38 1.5E-42 238.7 4.9 119 37-155 9-130 (130)
2 1uwd_A Hypothetical protein TM 99.9 4.9E-22 1.7E-26 143.6 8.6 90 35-128 5-94 (103)
3 3lno_A Putative uncharacterize 99.9 1.9E-22 6.6E-27 147.4 4.9 90 35-127 7-96 (108)
4 3cq1_A Putative uncharacterize 99.8 3.6E-21 1.2E-25 139.2 7.2 86 37-127 7-92 (103)
5 1xhj_A Nitrogen fixation prote 93.4 0.53 1.8E-05 32.7 8.1 72 38-117 9-81 (88)
6 2z51_A NIFU-like protein 2, ch 91.8 0.55 1.9E-05 35.8 7.0 71 34-114 83-153 (154)
7 2z51_A NIFU-like protein 2, ch 87.9 0.62 2.1E-05 35.4 4.5 75 33-115 1-76 (154)
8 1veh_A NIFU-like protein hirip 87.8 0.74 2.5E-05 32.2 4.5 70 38-114 15-85 (92)
9 1th5_A NIFU1; iron-sulfur clus 87.1 0.83 2.8E-05 30.7 4.3 70 35-114 3-72 (74)
10 2zzt_A Putative uncharacterize 69.2 23 0.00078 24.3 7.2 74 37-121 11-87 (107)
11 3byp_A CZRB protein; membrane 68.2 11 0.00036 24.9 5.2 75 34-118 8-85 (94)
12 2dyj_A Ribosome-binding factor 67.3 21 0.0007 24.5 6.6 40 39-85 14-53 (95)
13 2kd5_A ADF H, actin severing a 54.8 31 0.0011 24.8 6.0 57 84-142 87-144 (144)
14 1ghh_A DINI, DNA-damage-induci 46.4 13 0.00046 25.2 2.6 32 89-120 16-48 (81)
15 3dxs_X Copper-transporting ATP 43.3 51 0.0018 19.7 5.0 35 79-117 4-38 (74)
16 4a4j_A Pacszia, cation-transpo 42.5 50 0.0017 19.3 5.0 35 79-117 4-38 (69)
17 1jos_A RBFA, ribosome-binding 40.9 80 0.0027 22.6 6.3 39 40-85 18-57 (128)
18 1xoc_A Oligopeptide-binding pr 38.1 50 0.0017 28.2 5.5 56 34-94 96-153 (520)
19 3h90_A Ferrous-iron efflux pum 37.8 1.1E+02 0.0037 24.1 7.2 71 36-118 206-279 (283)
20 1uqw_A Putative binding protei 30.7 57 0.002 27.8 4.7 56 34-94 99-155 (509)
21 2kvk_A Actin severing and dyna 29.2 1.6E+02 0.0053 21.0 7.1 56 85-142 88-144 (144)
22 3cjk_B Copper-transporting ATP 26.3 1E+02 0.0035 17.9 5.3 35 79-117 4-38 (75)
23 1pa4_A Probable ribosome-bindi 25.2 74 0.0025 22.3 3.7 40 39-85 15-55 (116)
24 2l3m_A Copper-ION-binding prot 24.7 1E+02 0.0036 17.5 5.3 37 77-117 5-41 (71)
25 1osd_A MERP, hypothetical prot 23.6 1.1E+02 0.0038 17.4 5.0 35 79-117 5-39 (72)
26 1ik9_C DNA ligase IV; DNA END 23.4 65 0.0022 18.4 2.6 25 25-49 11-35 (37)
27 2ia7_A Tail lysozyme, putative 23.3 1.9E+02 0.0066 20.1 7.1 58 39-118 36-99 (134)
28 1mwy_A ZNTA; open-faced beta-s 22.8 1.2E+02 0.0041 17.6 5.0 35 79-117 5-39 (73)
29 1cpz_A Protein (COPZ); copper 22.5 1.1E+02 0.0038 17.0 4.4 33 81-117 4-36 (68)
30 2xmw_A PACS-N, cation-transpor 22.4 1.1E+02 0.0039 17.2 5.3 34 80-117 6-39 (71)
31 2g9o_A Copper-transporting ATP 22.2 1.2E+02 0.0043 19.0 4.2 35 79-117 5-39 (90)
32 1yg0_A COP associated protein; 22.0 1.1E+02 0.0038 16.9 4.6 34 80-117 4-37 (66)
33 2qif_A Copper chaperone COPZ; 21.4 1.1E+02 0.0039 16.7 4.9 34 80-117 5-38 (69)
34 3ry3_A Putative solute-binding 21.0 1.3E+02 0.0045 25.7 5.2 53 34-94 104-156 (528)
35 2noo_A NIKA, nickel-binding pe 20.7 67 0.0023 27.2 3.2 56 34-94 77-133 (502)
36 2kt2_A Mercuric reductase; nme 20.6 1.2E+02 0.004 17.2 3.5 33 81-117 4-36 (69)
37 1kvi_A Copper-transporting ATP 20.3 1.4E+02 0.0049 17.5 4.4 36 78-117 9-44 (79)
38 3iwl_A Copper transport protei 20.3 1.4E+02 0.0049 17.5 4.6 32 80-117 5-36 (68)
39 2ew9_A Copper-transporting ATP 20.1 1.8E+02 0.0062 19.4 4.9 35 79-117 82-116 (149)
No 1
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=100.00 E-value=4.4e-38 Score=238.72 Aligned_cols=119 Identities=56% Similarity=0.968 Sum_probs=104.9
Q ss_pred CHHHHHHHhccCCCCCCCCCccccCceeecceEE---eCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEE
Q 031455 37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVD 113 (159)
Q Consensus 37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I---~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~ 113 (159)
++++||++|++|+|||+|.+|++||+||+++|.+ .++++.|.|+||||+||||++..|+.+|+.+|.+++|+..+|+
T Consensus 9 ~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV~ 88 (130)
T 3ux2_A 9 KALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLE 88 (130)
T ss_dssp HHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCCC
T ss_pred cHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEEE
Confidence 4789999999999999999999999999966654 2334479999999999999999999999999988899999999
Q ss_pred EEEcCCCCcCHHHHHHHhcchhhhhcccCCccHHHHHhhhcC
Q 031455 114 IMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 155 (159)
Q Consensus 114 V~i~~~~h~~~~~lnkql~dkErv~aa~e~~~l~~~~~~~~~ 155 (159)
|++++++|.+++++|||+||||||+||+||++|+++|++|+.
T Consensus 89 v~I~pgtH~~e~~vnKQl~DKERvaAAlEn~~l~~~v~~c~~ 130 (130)
T 3ux2_A 89 IYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCVL 130 (130)
T ss_dssp CCCCCC------CHHHHHHCHHHHHHHHHSHHHHHHHHHHHC
T ss_pred EEECCCCCcCHHHHHHhhhhHHHHHHHhcCHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999974
No 2
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.86 E-value=4.9e-22 Score=143.57 Aligned_cols=90 Identities=18% Similarity=0.300 Sum_probs=83.3
Q ss_pred cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI 114 (159)
Q Consensus 35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V 114 (159)
|+++++|+++|++|+|||+|.+|++||+||+ |.+++++ +|+|+|++|+|+||+.+.|..+|+.+| ++++|+.+|+|
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~~-~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~v~V 80 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYD--IQIDDQN-NVKVLMTMTTPMCPLAGMILSDAEEAI-KKIEGVNNVEV 80 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCC--EEECTTC-EEEEEECCSSSCCSSHHHHHHHHHHHH-HTSSSCCEEEE
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeE--EEEcCCC-EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCcceEEE
Confidence 5789999999999999999999999999999 9998643 899999999999999999999999999 78999999999
Q ss_pred EEcCCCCcCHHHHH
Q 031455 115 MVAPGTHATEAAVN 128 (159)
Q Consensus 115 ~i~~~~h~~~~~ln 128 (159)
++++.++|+.+.+.
T Consensus 81 ~l~~~p~W~~~~~s 94 (103)
T 1uwd_A 81 ELTFDPPWTPERMS 94 (103)
T ss_dssp EECCSSCCCGGGSC
T ss_pred EEecCCCCChHHCC
Confidence 99999999875443
No 3
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.86 E-value=1.9e-22 Score=147.37 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=82.9
Q ss_pred cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI 114 (159)
Q Consensus 35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V 114 (159)
+.++++|+++|++|+|||+|++|++||+||+ |.+++++ +|+|+|++|+|+||+...|..+|+.+|+++++|+.+|+|
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~--I~v~~~~-~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYD--VTADENN-NAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEE--EEECTTC-CEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCCHHHcCCceE--EEECCCC-eEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 4688999999999999999999999999999 9998643 899999999999999999999999999667999999999
Q ss_pred EEcCCCCcCHHHH
Q 031455 115 MVAPGTHATEAAV 127 (159)
Q Consensus 115 ~i~~~~h~~~~~l 127 (159)
++++.++|+.+.+
T Consensus 84 ~l~~~p~W~~~~~ 96 (108)
T 3lno_A 84 NVVWNPPWSKERM 96 (108)
T ss_dssp EECCSSCCCGGGS
T ss_pred EEEecCCCChHHC
Confidence 9999999987544
No 4
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.84 E-value=3.6e-21 Score=139.15 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=80.7
Q ss_pred CHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEE
Q 031455 37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMV 116 (159)
Q Consensus 37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i 116 (159)
++++|+++|++|.|||+|.+|++||+||+ |.++++ +|+|+|++|+|+||+...|..+|+.+| ++++|+.+|+|++
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~--v~v~~~--~V~v~l~lt~~~cp~~~~l~~~i~~al-~~l~gv~~V~V~l 81 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYD--LVVEPP--RAYVRMTLTTPGCPLHDSLGEAVRQAL-SRLPGVEEVEVEV 81 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEE--EEEETT--EEEEEECCSSSSCCSSCHHHHHHHHHH-HTSTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEE--EEEECC--EEEEEEEECCCCCcHHHHHHHHHHHHH-HhCCCceeEEEEE
Confidence 57899999999999999999999999999 999865 899999999999999999999999999 7899999999999
Q ss_pred cCCCCcCHHHH
Q 031455 117 APGTHATEAAV 127 (159)
Q Consensus 117 ~~~~h~~~~~l 127 (159)
++.++|+.+.+
T Consensus 82 ~~~p~W~~~~~ 92 (103)
T 3cq1_A 82 TFEPPWTLARL 92 (103)
T ss_dssp CCSSCCCGGGC
T ss_pred ecCCCCChHHC
Confidence 99999987543
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=93.40 E-value=0.53 Score=32.74 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=50.3
Q ss_pred HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHH-HHHHHHHHHHHhhCCCceEEEEEE
Q 031455 38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT-VIGLCLRVKLMRSLPPRFKVDIMV 116 (159)
Q Consensus 38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~-~I~~~V~~aL~~~v~~v~~V~V~i 116 (159)
.+.|.++|.+ .=|-+. -+=|=|.- +.+++ +.|.|.|.=...|||... +++..|+++|+..+|++..|...-
T Consensus 9 ~~~I~~~L~~-IRP~L~---~dGGdvel--v~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~ 80 (88)
T 1xhj_A 9 FDQVAEVIER-LRPFLL---RDGGDCTL--VDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVF 80 (88)
T ss_dssp HHHHHHHHHH-HHHHHH---HHSCEEEE--EECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEE
T ss_pred HHHHHHHHHH-hcHHHH---hcCCeEEE--EEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 4556666655 334332 23444555 55543 389999999999999986 488899999988899988877643
Q ss_pred c
Q 031455 117 A 117 (159)
Q Consensus 117 ~ 117 (159)
.
T Consensus 81 ~ 81 (88)
T 1xhj_A 81 L 81 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=91.76 E-value=0.55 Score=35.76 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=51.1
Q ss_pred CcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEE
Q 031455 34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVD 113 (159)
Q Consensus 34 ~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~ 113 (159)
.+++++.|-++|.+|+ |-+.. .+=|=|.- +.|+++ .|+|.++=...+| .+++..|+++|++.+|++..|.
T Consensus 83 l~L~~~~v~~~L~~iR-P~L~~--~dGGdvel--v~v~~~--~v~v~l~Gac~~~---~Tlk~~Ie~~l~e~vP~i~~V~ 152 (154)
T 2z51_A 83 LELNEENIEKVLEEIR-PYLIG--TADGSLDL--VEIEDP--IVKIRITGPAAGV---MTVRVAVTQKLREKIPSIAAVQ 152 (154)
T ss_dssp CCSSHHHHHHHHHHHG-GGCCG--GGCCEEEE--EEEETT--EEEEEEESGGGGC---HHHHHHHHHHHHHHCTTCCEEE
T ss_pred hHHHHHHHHHHHHHHH-HHhhh--cCCCCeEE--EEEECC--EEEEEEecCCccc---HhHHHHHHHHHHHHCCCccEEE
Confidence 4688999999988753 55532 13455666 667643 7888887655554 6889999999999999998875
Q ss_pred E
Q 031455 114 I 114 (159)
Q Consensus 114 V 114 (159)
.
T Consensus 153 ~ 153 (154)
T 2z51_A 153 L 153 (154)
T ss_dssp E
T ss_pred e
Confidence 3
No 7
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=87.86 E-value=0.62 Score=35.45 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=54.2
Q ss_pred cCcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHH-HHHHHHHHHHHhhCCCceE
Q 031455 33 AEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMAT-VIGLCLRVKLMRSLPPRFK 111 (159)
Q Consensus 33 ~~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~-~I~~~V~~aL~~~v~~v~~ 111 (159)
|.+++.+.|.++|.+| =|-+.. +=|=|.- +.++++ .|.|.+.=...|||... +++..|+++|+..+|++..
T Consensus 1 ~~~~~~e~v~~~L~~i-RP~l~~---dGGdvel--v~v~~~--~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~ 72 (154)
T 2z51_A 1 MVPLTEENVESVLDEI-RPYLMS---DGGNVAL--HEIDGN--VVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVA 72 (154)
T ss_dssp CCCSCHHHHHHHHHHH-HHHHHH---TTEEEEE--EEEETT--EEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCcchHHHHHHHHHHh-ChHHHh---cCCeEEE--EEEECC--EEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceE
Confidence 3467888888888763 454432 2344554 556543 89999998899999964 5888999999888998877
Q ss_pred EEEE
Q 031455 112 VDIM 115 (159)
Q Consensus 112 V~V~ 115 (159)
|...
T Consensus 73 V~~v 76 (154)
T 2z51_A 73 VEAL 76 (154)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6553
No 8
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=87.84 E-value=0.74 Score=32.19 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=47.6
Q ss_pred HHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHH-HHHHHHHHHHhhCCCceEEEE
Q 031455 38 QQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATV-IGLCLRVKLMRSLPPRFKVDI 114 (159)
Q Consensus 38 ~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~-I~~~V~~aL~~~v~~v~~V~V 114 (159)
.+.|.+.|.+-.=|-+. -+=|=|.- +.++++ .|.|.|.=...|||.... ++..|+++|+..+|++..|..
T Consensus 15 ~~~I~~~L~~~IRP~L~---~dGGdvel--v~v~~g--~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~ 85 (92)
T 1veh_A 15 VAMIKELLDTRIRPTVQ---EDGGDVIY--RGFEDG--IVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQ 85 (92)
T ss_dssp HHHHHHHHHHTTHHHHH---HHSCCCCE--EEEETT--EEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEE
T ss_pred HHHHHHHHHHHhhHHHH---hcCCeEEE--EEEeCC--EEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEE
Confidence 34466666543334332 22344444 556543 888888888999999864 788999999888999877765
No 9
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=87.11 E-value=0.83 Score=30.70 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=49.1
Q ss_pred cCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEE
Q 031455 35 QIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDI 114 (159)
Q Consensus 35 ~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V 114 (159)
.++.+.|.++|.+ .-|-+..+= =|=|.- +.++++ .|.|.|+=...+| .+++..|+++|++.+|++..|..
T Consensus 3 ~~~~~~V~~~L~~-iRP~L~~dG--GGdvel--v~v~~g--~V~v~l~GaC~gc---~Tlk~gIe~~L~~~vpei~~V~~ 72 (74)
T 1th5_A 3 ELNEENVEKVLNE-IRPYLAGTG--GGGLQF--LMIKGP--IVKVRLTGPAAVV---RTVRIAVSKKLREKIPSIQIVQL 72 (74)
T ss_dssp CCSHHHHHHHHTT-THHHHTTTT--CCCCCC--CEEETT--EEEECCCSSSSSS---SSHHHHHHHHHHHHCTTCSEEEE
T ss_pred hHHHHHHHHHHHH-HhHHHHhcC--CCcEEE--EEEeCC--EEEEEEecCCcch---HHHHHHHHHHHHHHCCCCcEEEe
Confidence 4678899999987 556554332 023444 445543 7888777777777 68999999999888999877653
No 10
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=69.23 E-value=23 Score=24.28 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=42.8
Q ss_pred CHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCC-CCchHH--HHHHHHHHHHHhhCCCceEEE
Q 031455 37 DQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVE-HCSMAT--VIGLCLRVKLMRSLPPRFKVD 113 (159)
Q Consensus 37 t~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p-~Cp~~~--~I~~~V~~aL~~~v~~v~~V~ 113 (159)
..++|.+.|..+ |+. .++-+|. ++-. |..+.+++.+..+ ..++.+ .|...|+.+|++.++.+..|.
T Consensus 11 ~~~~I~~~l~~~--~gV-~~vh~lr------~r~~--G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 11 MYDDIFAVLERF--PNV-HNPHRVR------IRRV--GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp HHHHHHHHHTTC--SSC-EEEEEEE------EECS--CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHcC--CCc-cccEEEE------EEEE--CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEE
Confidence 456777777654 433 2333332 2222 2234455544444 445444 799999999977776677777
Q ss_pred EEEcCCCC
Q 031455 114 IMVAPGTH 121 (159)
Q Consensus 114 V~i~~~~h 121 (159)
|.+.+...
T Consensus 80 IhvEp~~~ 87 (107)
T 2zzt_A 80 IHVEPLGN 87 (107)
T ss_dssp EEEEETTC
T ss_pred EEEecCCC
Confidence 77775443
No 11
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=68.25 E-value=11 Score=24.91 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=43.5
Q ss_pred CcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCC-CCchH--HHHHHHHHHHHHhhCCCce
Q 031455 34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVE-HCSMA--TVIGLCLRVKLMRSLPPRF 110 (159)
Q Consensus 34 ~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p-~Cp~~--~~I~~~V~~aL~~~v~~v~ 110 (159)
+....++|.+.|..+..|+. .++.+|..- -.+. .+.+++.+..+ +.++. ..+...++.+|++.++..
T Consensus 8 ~~~~~~~I~~~l~~~~~~gV-~~vh~l~~~------~~g~--~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~- 77 (94)
T 3byp_A 8 PPEEVERIRAFLQERIRGRA-LEVHDLKTR------RAGP--RSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL- 77 (94)
T ss_dssp CHHHHHHHHHHHHHHHTTTC-SEEEEEEEE------EETT--EEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-
T ss_pred CHHHHHHHHHHHHhcCCCCc-eeeeeEEEE------EECC--cEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-
Confidence 34456777777766523543 344444322 1222 45555555544 34444 678899999997777654
Q ss_pred EEEEEEcC
Q 031455 111 KVDIMVAP 118 (159)
Q Consensus 111 ~V~V~i~~ 118 (159)
.+.|.+.+
T Consensus 78 ~vtIh~ep 85 (94)
T 3byp_A 78 QATIHVEP 85 (94)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeCC
Confidence 77776664
No 12
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=67.33 E-value=21 Score=24.48 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=27.9
Q ss_pred HHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCC
Q 031455 39 QEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTV 85 (159)
Q Consensus 39 e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~ 85 (159)
++|-+.|++++||-++ .+ -|.+ |++..|..+++|.+++-.
T Consensus 14 ~~ls~il~ei~Dprl~--~v---tVt~--V~vs~Dl~~AkVyvs~~~ 53 (95)
T 2dyj_A 14 RALAEEIQALEDPRLF--LL---TVEA--VRLSKDGSVLSVYVEAFR 53 (95)
T ss_dssp HHHHHHHHTCCCGGGT--TC---EEEE--EEECTTSSEEEEEEECSS
T ss_pred HHHHHHHHHhcCcccC--cE---EEEE--EEECCCCCEEEEEEEeCC
Confidence 4455555889999875 22 2456 888888778888887653
No 13
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=54.77 E-value=31 Score=24.84 Aligned_cols=57 Identities=16% Similarity=0.061 Sum_probs=42.5
Q ss_pred CCCCCchHHHH-HHHHHHHHHhhCCCceEEEEEEcCCCCcCHHHHHHHhcchhhhhcccC
Q 031455 84 TVEHCSMATVI-GLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALE 142 (159)
Q Consensus 84 T~p~Cp~~~~I-~~~V~~aL~~~v~~v~~V~V~i~~~~h~~~~~lnkql~dkErv~aa~e 142 (159)
.-.+||....| -..-+.+|++.+.|+ ++++........++.+.+.+....-++||+|
T Consensus 87 ~Pd~a~vk~KMlyAssk~~l~~~l~g~--~~i~a~d~~el~~~~i~~kl~~~r~~~~~~~ 144 (144)
T 2kd5_A 87 IPDTARPREKMMYSASRDALSSVSEGY--LPIQANDESGLDAEEIIRKVRLHRSVAAALE 144 (144)
T ss_dssp CCCCSCSHHHHHHHHHGGGGTTTTCCS--EEEEESSSSSSSHHHHHHHHHHTTCTTSSCC
T ss_pred CCCCCCHHHHhhhHHHHHHHHHHhCCe--EEEEECChHHCCHHHHHHHHhhhhhhhhhcC
Confidence 34467777665 344566675666676 8888888888889999999988777999886
No 14
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=46.41 E-value=13 Score=25.22 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=24.6
Q ss_pred chHHHHHHHHHHHHHhhCCCc-eEEEEEEcCCC
Q 031455 89 SMATVIGLCLRVKLMRSLPPR-FKVDIMVAPGT 120 (159)
Q Consensus 89 p~~~~I~~~V~~aL~~~v~~v-~~V~V~i~~~~ 120 (159)
...+.|..++..+|.+.+|.. ..|.|+.....
T Consensus 16 ga~~aL~~EL~kRl~~~fpd~~~~V~Vr~~s~n 48 (81)
T 1ghh_A 16 GAIDALAGELSRRIQYAFPDNEGHVSVRYAAAN 48 (81)
T ss_dssp THHHHHHHHHHHHHHHHCSSSCCEEEEEEESSC
T ss_pred hHHHHHHHHHHHHHHhhCCCCCceEEEeecCCC
Confidence 467899999999998888875 37777765433
No 15
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=43.34 E-value=51 Score=19.66 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=24.4
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+++......|+. =...|+.+| +.++|+..+.|.+.
T Consensus 4 ~~~~v~gm~C~~---C~~~ie~~l-~~~~gv~~~~v~~~ 38 (74)
T 3dxs_X 4 IQVGVTGMTCAA---CSNSVEAAL-MNVNGVFKASVALL 38 (74)
T ss_dssp EEEEEECCCSHH---HHHHHHHHH-HTSTTEEEEEEEGG
T ss_pred EEEEECCcCCHH---HHHHHHHHH-hcCCCEEEEEEEec
Confidence 455556677753 345678888 78899988887754
No 16
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=42.45 E-value=50 Score=19.33 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=23.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+++.+....|+. =...|+.+| +.++|+..+.|.+.
T Consensus 4 ~~~~v~gm~C~~---C~~~i~~~l-~~~~gv~~~~v~~~ 38 (69)
T 4a4j_A 4 INLQLEGMDCTS---CASSIERAI-AKVPGVQSCQVNFA 38 (69)
T ss_dssp EEEEEESCCSHH---HHHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEEEECCeecHH---HHHHHHHHH-hcCCCeEEEEEEec
Confidence 455566777754 335678888 77899988877654
No 17
>1jos_A RBFA, ribosome-binding factor A; RNA binding protein, structure 2 function project, S2F, structural genomics; 1.70A {Haemophilus influenzae} SCOP: d.52.7.1 PDB: 1kkg_A
Probab=40.94 E-value=80 Score=22.56 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=27.4
Q ss_pred HHHHHh-ccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCC
Q 031455 40 EVFDHV-RDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTV 85 (159)
Q Consensus 40 ~I~eaL-~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~ 85 (159)
+|-+.| ++++||-++ .| -|.+ |++..|..+++|.+++..
T Consensus 18 ~ls~il~~eikDprl~--~v---tVt~--V~vS~Dl~~AkVyvs~~g 57 (128)
T 1jos_A 18 EIAVILQREVKDPRIG--MV---TVSD--VEVSSDLSYAKIFVTFLF 57 (128)
T ss_dssp HHHHHHHHHCCCTTTC--CE---EEEE--EEECTTSCEEEEEEEESC
T ss_pred HHHHHHHHHccCCccC--ce---EEeE--EEECCCCCEEEEEEEeCC
Confidence 344444 689999875 22 2456 888888778999988865
No 18
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=38.05 E-value=50 Score=28.21 Aligned_cols=56 Identities=7% Similarity=0.082 Sum_probs=39.0
Q ss_pred CcCCHHHHHHHhccCCCCCCCCC-ccccCceeecceEEeCCCceEEEEEEeCCCCCc-hHHHH
Q 031455 34 EQIDQQEVFDHVRDIKDPEHPYS-LEELKVITEDAIEVDDERSYVRVTFTPTVEHCS-MATVI 94 (159)
Q Consensus 34 ~~lt~e~I~eaL~~V~DPEl~~~-IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp-~~~~I 94 (159)
.++|.++|...+..+.+|..+-. -..+.-|.+ |++.++ -+|.++++.|.-+ +...|
T Consensus 96 ~p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~--v~~~d~---~Tv~i~l~~p~~~~~~~~l 153 (520)
T 1xoc_A 96 KELTADDVVFTYSVPLSKDYKGERGSTYEMLKS--VEKKGD---YEVLFKLKYKDGNFYNNAL 153 (520)
T ss_dssp CBCCHHHHHHHHHGGGSTTCCCSCGGGTTTEEE--EEEEET---TEEEEEESSCCTHHHHTHH
T ss_pred CccCHHHHHHHHHHHhCCCCCccccccccccce--EEEccC---CEEEEEeCCCCcHHHHHHh
Confidence 58999999999999999986532 233455777 877665 2456666777666 55544
No 19
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=37.78 E-value=1.1e+02 Score=24.12 Aligned_cols=71 Identities=18% Similarity=0.256 Sum_probs=42.9
Q ss_pred CCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCC-CCch--HHHHHHHHHHHHHhhCCCceEE
Q 031455 36 IDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVE-HCSM--ATVIGLCLRVKLMRSLPPRFKV 112 (159)
Q Consensus 36 lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p-~Cp~--~~~I~~~V~~aL~~~v~~v~~V 112 (159)
...++|.+.+.++ |+. .++.++.. +-.+ .+..+++.+..+ +.++ ...+...++++|+++++. .++
T Consensus 206 ~~~~~i~~~i~~~--~~V-~~v~~l~~------~~~G--~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v 273 (283)
T 3h90_A 206 EERQEIIDIVTSW--PGV-SGAHDLRT------RQSG--PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDV 273 (283)
T ss_dssp HHHHHHHHHHHHS--SSC-SEEEEEEE------EEET--TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEE
T ss_pred HHHHHHHHHHhcC--CCc-ccceeeEE------EEEC--CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeE
Confidence 4567777777774 543 34444432 2122 245555555544 3454 468899999999777765 677
Q ss_pred EEEEcC
Q 031455 113 DIMVAP 118 (159)
Q Consensus 113 ~V~i~~ 118 (159)
.|.+.+
T Consensus 274 ~ih~ep 279 (283)
T 3h90_A 274 IIHQDP 279 (283)
T ss_dssp EEEEEC
T ss_pred EEEecc
Confidence 777664
No 20
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=30.73 E-value=57 Score=27.78 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=37.5
Q ss_pred CcCCHHHHHHHhccCCCCCCCCC-ccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHH
Q 031455 34 EQIDQQEVFDHVRDIKDPEHPYS-LEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVI 94 (159)
Q Consensus 34 ~~lt~e~I~eaL~~V~DPEl~~~-IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I 94 (159)
.++|.++|...+..+.+|..+.. -..+.-|.+ |++.++. . |.+++..|..++...+
T Consensus 99 ~p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~--v~~~dd~-T--v~i~l~~p~~~~~~~l 155 (509)
T 1uqw_A 99 TDFNAAAVKANLDRASDPANHLKRHNLYKNIAK--TEAIDPT-T--VKITLKQPFSAFINIL 155 (509)
T ss_dssp CBCCHHHHHHHHHHHTCGGGCCTTGGGTTTEEE--EEEEETT-E--EEEEESSCCTTHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcchhhhcceee--EEEcCCC-E--EEEEECCCCHHHHHHH
Confidence 58999999999999999976532 222445777 8776652 4 5566666655555444
No 21
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=29.16 E-value=1.6e+02 Score=21.02 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=41.4
Q ss_pred CCCCchHHHH-HHHHHHHHHhhCCCceEEEEEEcCCCCcCHHHHHHHhcchhhhhcccC
Q 031455 85 VEHCSMATVI-GLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALE 142 (159)
Q Consensus 85 ~p~Cp~~~~I-~~~V~~aL~~~v~~v~~V~V~i~~~~h~~~~~lnkql~dkErv~aa~e 142 (159)
-.+||....| -..-+.+|++.+.| .+.++......-.++.+.+.+.....+.+++|
T Consensus 88 Pd~a~vk~KMlyassk~~lk~~l~~--~~~i~a~d~~el~~e~i~~kl~~~~~~~~~~e 144 (144)
T 2kvk_A 88 PDTARPREKMMYSASRDALSSVSEG--YLPIQANDESGLDAEEIIRKVRLHRSVAAALE 144 (144)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHCTT--EEEEEESSGGGGCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCC--EEEEEECChHHCCHHHHHHHHhcCCcEeeccC
Confidence 3578888766 45556777677766 36777777777788888888888888888876
No 22
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=26.34 E-value=1e+02 Score=17.91 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=23.8
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+.+.+....|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 4 ~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 38 (75)
T 3cjk_B 4 VTISVEGMTCNSC---VWTIEQQI-GKVNGVHHIKVSLE 38 (75)
T ss_dssp EEEEECCCCSHHH---HHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEEEECCccCHHH---HHHHHHHH-hcCCCeEEEEEEec
Confidence 4556667778542 34477788 77899988877654
No 23
>1pa4_A Probable ribosome-binding factor A; structural genomics, distant homology, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Mycoplasma pneumoniae} SCOP: d.52.7.1
Probab=25.25 E-value=74 Score=22.31 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=26.7
Q ss_pred HHHHHHh-ccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCC
Q 031455 39 QEVFDHV-RDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTV 85 (159)
Q Consensus 39 e~I~eaL-~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~ 85 (159)
.+|-+.| ++++||-++ .|. |.+ |++..|..+++|.+++..
T Consensus 15 ~~ls~il~~eikDprl~--~vt---Vt~--V~vs~Dl~~AkVyvs~~~ 55 (116)
T 1pa4_A 15 RLINRTVIHEIYNETVK--TGH---VTH--VKLSDDLLHVTVYLDCYN 55 (116)
T ss_dssp HHHHHHHTTCSSSSCHH--HHC---CSC--CEEETTTTEEEECCCCSS
T ss_pred HHHHHHHHHhccCcccC--ceE---EeE--EEECCCCCEEEEEEEeCC
Confidence 3344444 779999875 222 345 888877778888888754
No 24
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=24.66 E-value=1e+02 Score=17.49 Aligned_cols=37 Identities=14% Similarity=0.165 Sum_probs=25.1
Q ss_pred EEEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 77 VRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 77 V~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
-.+.+.+....|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 5 ~~~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 41 (71)
T 2l3m_A 5 EQLTLQVEGMSCGHC---VNAIESSV-KELNGVEQVKVQLA 41 (71)
T ss_dssp EEEEEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEEEEEECCccCHHH---HHHHHHHH-HcCCCeEEEEEEec
Confidence 345666677778542 33477788 77899988887654
No 25
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=23.56 E-value=1.1e+02 Score=17.37 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=23.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+.+.+....|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 5 ~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 39 (72)
T 1osd_A 5 VTLSVPGMTCSAC---PITVKKAI-SKVEGVSKVDVTFE 39 (72)
T ss_dssp EEEECTTCCSTTH---HHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEEEECCeEcHHH---HHHHHHHH-hcCCCeEEEEEEec
Confidence 4555566667542 23477788 77899988877654
No 26
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.39 E-value=65 Score=18.39 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=21.1
Q ss_pred CCCCCccccCcCCHHHHHHHhccCC
Q 031455 25 SCVNDEYAAEQIDQQEVFDHVRDIK 49 (159)
Q Consensus 25 ~~~~~~~~~~~lt~e~I~eaL~~V~ 49 (159)
.+.+-+++...+|.+++...|.++.
T Consensus 11 ~D~yGDSY~rd~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 11 YDCYGDSYFIDTDLNQLKEVFSGIK 35 (37)
T ss_dssp BCTTSCBSSSCCCHHHHHHHHHTCC
T ss_pred cccccccccCcCCHHHHHHHHHHcc
Confidence 4566789999999999999998884
No 27
>2ia7_A Tail lysozyme, putative; NP_952040.1, putative tail lysozyme, structural genomics, JO center for structural genomics, JCSG; 1.44A {Geobacter sulfurreducens} SCOP: d.373.1.1
Probab=23.27 E-value=1.9e+02 Score=20.13 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHHHHHhcc-----CCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCc-hHHHHHHHHHHHHHhhCCCceEE
Q 031455 39 QEVFDHVRD-----IKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCS-MATVIGLCLRVKLMRSLPPRFKV 112 (159)
Q Consensus 39 e~I~eaL~~-----V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp-~~~~I~~~V~~aL~~~v~~v~~V 112 (159)
+.|...|.+ +.+|++|..+.+|- .. |.-+ ....+...|+.+|.+-.|-+..+
T Consensus 36 qsI~~iL~T~~G~r~~~pdyGs~l~dli--~~--------------------~~~~~~~~~i~~~i~~al~~~EPRi~~~ 93 (134)
T 2ia7_A 36 ESIRIILGTARGERVMRPDFGCGIHDRV--FS--------------------VINTTTLGLIENEVKEALILWEPRIELL 93 (134)
T ss_dssp HHHHHHHTCCTTSSTTCTTCSCGGGGCC--CS--------------------CCCHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHCCCCCCcccCcccCCCchHHh--CC--------------------CCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 444444543 88999998888772 21 1122 36789999999996556777777
Q ss_pred EEEEcC
Q 031455 113 DIMVAP 118 (159)
Q Consensus 113 ~V~i~~ 118 (159)
.|.+..
T Consensus 94 ~V~v~~ 99 (134)
T 2ia7_A 94 SVTASP 99 (134)
T ss_dssp EEEEEC
T ss_pred EEEEee
Confidence 777764
No 28
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=22.79 E-value=1.2e+02 Score=17.56 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=22.6
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+.+.+....|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 5 ~~~~v~gm~C~~C---~~~ie~~l-~~~~gV~~~~v~~~ 39 (73)
T 1mwy_A 5 YSWKVSGMDCAAC---ARKVENAV-RQLAGVNQVQVLFA 39 (73)
T ss_dssp EEEEEESCCSTTH---HHHHHHHH-HTSSSEEEEEEETT
T ss_pred EEEEECCcCCHHH---HHHHHHHH-hcCCCeeEEEEEec
Confidence 3455555666442 23477788 77899988877654
No 29
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=22.49 E-value=1.1e+02 Score=17.05 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=21.2
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 81 FTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 81 mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+.+....|+.- ...++.+| ..++|+..+.+.+.
T Consensus 4 ~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 36 (68)
T 1cpz_A 4 FSVKGMSCNHC---VARIEEAV-GRISGVKKVKVQLK 36 (68)
T ss_dssp EEESCCCSSSH---HHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEECCeeCHHH---HHHHHHHH-HcCCCeEEEEEEec
Confidence 44455566542 23377788 77899988887664
No 30
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=22.44 E-value=1.1e+02 Score=17.17 Aligned_cols=34 Identities=9% Similarity=0.169 Sum_probs=22.8
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 80 TFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 80 ~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
.+.+....|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 6 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 39 (71)
T 2xmw_A 6 NLQLEGMRCAAC---ASSIERAI-AKVPGVQSCQVNFA 39 (71)
T ss_dssp EEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEEECCcccHHH---HHHHHHHH-hcCCCeEEEEEEcc
Confidence 445556677532 34477888 77899988887654
No 31
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=22.22 E-value=1.2e+02 Score=18.97 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=24.1
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+++.+....|+.- ...|+.+| ..++|+..+.|.+.
T Consensus 5 ~~l~v~Gm~C~~C---~~~Ie~~L-~~~~GV~~v~v~l~ 39 (90)
T 2g9o_A 5 ATFIIDGMHCKSC---VSNIESTL-SALQYVSSIVVSLE 39 (90)
T ss_dssp EEEEEESCCHHHH---HHHHHHHH-TTCTTEEEEEEETT
T ss_pred EEEEECCcCCHHH---HHHHHHHH-HcCCCeeEEEEEcc
Confidence 4556667777542 34478888 78899988887654
No 32
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=22.03 E-value=1.1e+02 Score=16.91 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=22.7
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 80 TFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 80 ~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
++.+....|+.- ...++.+| ..++|+..+.+.+.
T Consensus 4 ~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 37 (66)
T 1yg0_A 4 TFQVPSITCNHC---VDKIEKFV-GEIEGVSFIDVSVE 37 (66)
T ss_dssp EECCTTCSCSHH---HHHHHHHH-TTSSSEEEEEEETT
T ss_pred EEEECCcccHHH---HHHHHHHH-hcCCCceEEEEEcC
Confidence 455556667542 34577788 77899988877654
No 33
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=21.38 E-value=1.1e+02 Score=16.73 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=22.5
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 80 TFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 80 ~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
.+.+....|+.- ...++.+| ..++|+..+.+.+.
T Consensus 5 ~~~v~gm~C~~c---~~~i~~~l-~~~~gv~~~~v~~~ 38 (69)
T 2qif_A 5 TLQVEGMSCQHC---VKAVETSV-GELDGVSAVHVNLE 38 (69)
T ss_dssp EEEEECCCSHHH---HHHHHHHH-HTSTTEEEEEEETT
T ss_pred EEEECCcccHHH---HHHHHHHH-hcCCCeeEEEEEec
Confidence 455556677542 33477888 77899888877654
No 34
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=21.01 E-value=1.3e+02 Score=25.69 Aligned_cols=53 Identities=11% Similarity=0.145 Sum_probs=37.0
Q ss_pred CcCCHHHHHHHhccCCCCCCCCCccccCceeecceEEeCCCceEEEEEEeCCCCCchHHHH
Q 031455 34 EQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVI 94 (159)
Q Consensus 34 ~~lt~e~I~eaL~~V~DPEl~~~IVdLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I 94 (159)
.++|.++|...+..+.++.-.. .++-|.+ |++.++ =+|.+++..|.-++...+
T Consensus 104 ~p~TA~DV~~s~~~~~~~~~~~---~~~~i~~--v~~~d~---~Tv~i~l~~p~~~f~~~l 156 (528)
T 3ry3_A 104 SPLTAKDVAFTYNNAAASGGKV---DMGNFLS--AEVIDP---LNVRIHLKAPQSTFVNVL 156 (528)
T ss_dssp CBCCHHHHHHHHHHHTSSSCSS---CCSSEEE--EEEEET---TEEEEEESSCCTTHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccccc---ccccceE--EEEecC---CEEEEEECCCCHHHHHHH
Confidence 5799999999999998876433 3556777 777655 245666677766665544
No 35
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=20.72 E-value=67 Score=27.20 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=37.7
Q ss_pred CcCCHHHHHHHhccCCCCCCCCCcc-ccCceeecceEEeCCCceEEEEEEeCCCCCchHHHH
Q 031455 34 EQIDQQEVFDHVRDIKDPEHPYSLE-ELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVI 94 (159)
Q Consensus 34 ~~lt~e~I~eaL~~V~DPEl~~~IV-dLGlV~~~~I~I~~~~~~V~V~mtlT~p~Cp~~~~I 94 (159)
+++|.++|...+..+.+|..+.... -++-|.+ |++.++ =+|+++++.|..++...+
T Consensus 77 ~p~TA~DV~~s~~r~~~~~~~~~~~~~~~~i~~--v~~~d~---~Tv~i~l~~p~~~~~~~l 133 (502)
T 2noo_A 77 EPFDAEAAAENFRAVLDNRQAHAALELANQIVD--VKALSK---TELQITLKSAYYPFLQEL 133 (502)
T ss_dssp CBCCHHHHHHHHHHHHTTGGGGTTSHHHHHEEE--EEECSS---SEEEEEESSCCTTHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCcchhhhccccce--EEEcCC---CEEEEEECCCChHHHHHH
Confidence 5899999999999998987553321 1123666 777665 256677777776665544
No 36
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=20.58 E-value=1.2e+02 Score=17.21 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=21.7
Q ss_pred EEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 81 FTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 81 mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+.++...|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 4 ~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 36 (69)
T 2kt2_A 4 LKITGMTCDSC---AAHVKEAL-EKVPGVQSALVSYP 36 (69)
T ss_dssp EEEESSCSTHH---HHHHHHHH-HHSTTEEEEEEETT
T ss_pred EEECCcccHHH---HHHHHHHH-HcCCCeeEEEEEcc
Confidence 34456667542 34577788 77899988877654
No 37
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=20.34 E-value=1.4e+02 Score=17.46 Aligned_cols=36 Identities=8% Similarity=0.166 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 78 RVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 78 ~V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
.+.+.+....|+.- ...|+.+| ..++|+..+.+.+.
T Consensus 9 ~~~~~v~gm~C~~C---~~~i~~~l-~~~~gv~~~~v~~~ 44 (79)
T 1kvi_A 9 SVTISVEGMTCNSC---VWTIEQQI-GKVNGVHHIKVSLE 44 (79)
T ss_dssp EEEEEECCCCSTTT---HHHHHHHH-HHSSSCCCEEEEGG
T ss_pred EEEEEECCccCHHH---HHHHHHHH-hcCCCeEEEEEEcc
Confidence 34555555556432 23367778 67889888777654
No 38
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=20.32 E-value=1.4e+02 Score=17.49 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 80 TFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 80 ~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
++.+ ...|.. =...|+.+| ..++|+ .+.+.+.
T Consensus 5 ~~~v-gm~C~~---C~~~i~~~l-~~~~gV-~v~v~~~ 36 (68)
T 3iwl_A 5 EFSV-DMTCGG---CAEAVSRVL-NKLGGV-KYDIDLP 36 (68)
T ss_dssp EEEE-CCCSHH---HHHHHHHHH-HHHCSE-EEEEETT
T ss_pred EEEE-CcCcHH---HHHHHHHHH-HcCCCe-EEEEEcC
Confidence 4444 556643 234577777 667898 8877654
No 39
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=20.08 E-value=1.8e+02 Score=19.35 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=24.9
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHhhCCCceEEEEEEc
Q 031455 79 VTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVA 117 (159)
Q Consensus 79 V~mtlT~p~Cp~~~~I~~~V~~aL~~~v~~v~~V~V~i~ 117 (159)
+.+......|+.- ...|+.+| ..++|+..+.|.+.
T Consensus 82 ~~~~v~gm~C~~C---~~~ie~~l-~~~~gv~~~~v~~~ 116 (149)
T 2ew9_A 82 IELTITGMTCASC---VHNIESKL-TRTNGITYASVALA 116 (149)
T ss_dssp EEEEEESCCSHHH---HHHHHHHH-HHSSSCCEEEEETT
T ss_pred eEEEEEeccCHHH---HHHHHHHH-hcCCCeEEEEEEcC
Confidence 4566677788643 34577888 77899988887654
Done!