BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031458
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GIC|A Chain A, Crystal Structure Of A Putative Histidinol Dehydrogenase
           (Target Psi- 014034) From Methylococcus Capsulatus
 pdb|4GIC|B Chain B, Crystal Structure Of A Putative Histidinol Dehydrogenase
           (Target Psi- 014034) From Methylococcus Capsulatus
          Length = 423

 Score = 30.4 bits (67), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 14/91 (15%)

Query: 45  PATTYIAGAK------VKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVL 98
           P   Y+A AK      V ++     S  +V S +G+TD       L S+   D+   A+L
Sbjct: 218 PGNIYVATAKKLVFGQVGIDXVAGPSEILVIS-DGRTDPDWIAXDLFSQAEHDEDAQAIL 276

Query: 99  VS-------SPQNDCKTVAPGRERSRVILTS 122
           +S       + Q   + + PG ER+ VI TS
Sbjct: 277 ISPDAAHLEAVQASIERLLPGXERAEVIRTS 307


>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
 pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
           Bestatin
          Length = 421

 Score = 29.6 bits (65), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 30  EGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDH 89
           EG       +AG +  AT  +AGA+VK       S  V+ +++   +   T  I++   H
Sbjct: 173 EGDALAANLRAGEKITATVKVAGAEVKTLT----SHNVIATKKPDANKKNTNDIIIIGSH 228

Query: 90  QDQLCDAVLVSSPQNDCKTVAPGRERSRVI 119
            D +  A       +D   VA   E +RV+
Sbjct: 229 HDSVEKA---PGANDDASGVAVTLELARVM 255


>pdb|2WNW|A Chain A, The Crystal Structure Of Srfj From Salmonella Typhimurium
 pdb|2WNW|B Chain B, The Crystal Structure Of Srfj From Salmonella Typhimurium
          Length = 447

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 18/65 (27%)

Query: 88  DHQDQLCDAVLVSSPQND--------------CKTVAPGRERSRVIL-TSYNGISSETRY 132
           +HQ  LC+A +    QND              C+ V PG   +RV+L +SY+ +  E  +
Sbjct: 342 NHQGNLCEAPIQYDAQNDVLRRNHSWYGIGHFCRYVRPG---ARVMLSSSYDNLLEEVGF 398

Query: 133 ANSMG 137
            N  G
Sbjct: 399 VNPDG 403


>pdb|3KKE|A Chain A, Crystal Structure Of A Laci Family Transcriptional
           Regulator From Mycobacterium Smegmatis
 pdb|3KKE|B Chain B, Crystal Structure Of A Laci Family Transcriptional
           Regulator From Mycobacterium Smegmatis
 pdb|3KKE|C Chain C, Crystal Structure Of A Laci Family Transcriptional
           Regulator From Mycobacterium Smegmatis
 pdb|3KKE|D Chain D, Crystal Structure Of A Laci Family Transcriptional
           Regulator From Mycobacterium Smegmatis
          Length = 303

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 87  EDHQDQLCDAVLVSSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSG 146
           ED  D +  AVL   P     +  PGR  S VIL    G    T +  ++G  +   +SG
Sbjct: 81  EDFDDDMLAAVLEGVPAVTINSRVPGRVGS-VILDDQKGGGIATEHLITLGHSRIAFISG 139

Query: 147 CA 148
            A
Sbjct: 140 TA 141


>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
 pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
          Length = 429

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 121 TSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 159
           TSY   +S    A S+ F   E +   A+VLRL++E D+
Sbjct: 22  TSYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFEENDI 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,053,339
Number of Sequences: 62578
Number of extensions: 139601
Number of successful extensions: 284
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 5
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)