Query 031458
Match_columns 159
No_of_seqs 111 out of 325
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 14:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01190 Pollen_Ole_e_I: Polle 99.9 3.6E-26 7.7E-31 163.7 9.8 82 29-112 1-88 (97)
2 PF13620 CarboxypepD_reg: Carb 96.4 0.0049 1.1E-07 41.4 4.0 45 29-87 2-47 (82)
3 PF13715 DUF4480: Domain of un 96.0 0.02 4.2E-07 39.1 5.2 42 29-87 2-43 (88)
4 PF01060 DUF290: Transthyretin 94.7 0.11 2.3E-06 35.7 5.5 46 30-86 1-46 (80)
5 PF11974 MG1: Alpha-2-macroglo 94.3 0.075 1.6E-06 38.0 4.1 37 46-86 24-60 (97)
6 PF10670 DUF4198: Domain of un 93.7 0.12 2.5E-06 40.6 4.5 42 46-87 160-201 (215)
7 PRK15036 hydroxyisourate hydro 93.3 0.74 1.6E-05 35.1 8.2 49 28-86 28-76 (137)
8 PF07210 DUF1416: Protein of u 92.1 0.74 1.6E-05 32.5 6.2 57 25-101 6-63 (85)
9 PF08400 phage_tail_N: Prophag 90.9 1.7 3.8E-05 33.1 7.7 43 45-88 12-57 (134)
10 cd00421 intradiol_dioxygenase 90.7 1.2 2.5E-05 33.9 6.6 58 23-90 8-79 (146)
11 TIGR02438 catachol_actin catec 90.4 1 2.2E-05 38.3 6.7 50 25-84 131-190 (281)
12 cd03858 M14_CP_N-E_like Carbox 88.9 0.97 2.1E-05 39.3 5.6 41 28-86 299-339 (374)
13 PF05738 Cna_B: Cna protein B- 88.9 0.78 1.7E-05 29.8 3.9 34 50-86 1-35 (70)
14 PF08194 DIM: DIM protein; In 86.3 0.96 2.1E-05 27.0 2.7 21 16-38 15-35 (36)
15 cd03863 M14_CPD_II The second 85.9 1.4 3.1E-05 38.7 4.9 44 27-87 297-340 (375)
16 cd03462 1,2-CCD chlorocatechol 85.7 2.9 6.2E-05 35.0 6.4 52 24-85 97-158 (247)
17 KOG1948 Metalloproteinase-rela 85.5 1.2 2.6E-05 43.5 4.4 41 27-85 316-356 (1165)
18 PF00775 Dioxygenase_C: Dioxyg 85.2 1.6 3.4E-05 34.8 4.4 53 23-84 26-89 (183)
19 cd03868 M14_CPD_I The first ca 84.8 1.7 3.7E-05 37.9 4.9 42 27-86 296-337 (372)
20 cd03464 3,4-PCD_beta Protocate 84.8 4.3 9.2E-05 33.4 6.9 52 24-85 63-129 (220)
21 COG5266 CbiK ABC-type Co2+ tra 84.6 1.7 3.7E-05 36.7 4.5 40 47-86 182-229 (264)
22 cd03461 1,2-HQD Hydroxyquinol 84.5 3.5 7.6E-05 35.0 6.4 51 24-84 118-178 (277)
23 cd03463 3,4-PCD_alpha Protocat 84.4 4 8.6E-05 32.6 6.4 52 24-85 34-99 (185)
24 cd03459 3,4-PCD Protocatechuat 83.5 4.8 0.00011 31.2 6.4 52 24-85 13-79 (158)
25 cd03866 M14_CPM Peptidase M14 83.3 3.1 6.6E-05 36.6 5.8 44 27-86 295-338 (376)
26 TIGR02962 hdxy_isourate hydrox 82.0 4.9 0.00011 29.6 5.6 41 44-86 10-50 (112)
27 TIGR02422 protocat_beta protoc 81.9 6.4 0.00014 32.3 6.8 52 24-85 58-124 (220)
28 COG3485 PcaH Protocatechuate 3 81.6 6.3 0.00014 32.6 6.7 50 25-85 71-135 (226)
29 TIGR02423 protocat_alph protoc 81.5 5.9 0.00013 31.8 6.4 52 24-85 37-103 (193)
30 cd03867 M14_CPZ Peptidase M14- 79.1 3.9 8.4E-05 36.1 5.0 42 27-86 318-359 (395)
31 TIGR02465 chlorocat_1_2 chloro 79.0 6 0.00013 33.1 5.8 52 24-85 96-157 (246)
32 TIGR02439 catechol_proteo cate 78.7 7.7 0.00017 33.1 6.5 52 24-85 126-187 (285)
33 cd06245 M14_CPD_III The third 78.0 5.4 0.00012 34.9 5.5 42 27-87 287-328 (363)
34 cd03460 1,2-CTD Catechol 1,2 d 75.7 8.9 0.00019 32.7 6.1 50 25-84 123-182 (282)
35 PF02369 Big_1: Bacterial Ig-l 75.2 3.1 6.7E-05 29.5 2.8 54 23-88 21-77 (100)
36 KOG1948 Metalloproteinase-rela 74.4 16 0.00035 36.1 7.9 104 26-143 897-1002(1165)
37 cd03458 Catechol_intradiol_dio 72.5 14 0.0003 31.1 6.3 51 24-84 102-162 (256)
38 cd03865 M14_CPE_H Peptidase M1 68.3 8.5 0.00018 34.3 4.5 41 28-86 327-367 (402)
39 PF13115 YtkA: YtkA-like 66.8 18 0.0004 24.2 5.1 42 45-86 30-74 (86)
40 COG4850 Uncharacterized conser 63.0 15 0.00032 32.3 4.8 52 46-103 92-144 (373)
41 PF07172 GRP: Glycine rich pro 61.4 6.4 0.00014 28.2 2.0 11 1-11 1-12 (95)
42 cd03864 M14_CPN Peptidase M14 58.6 18 0.00038 32.1 4.7 42 27-86 316-357 (392)
43 cd03457 intradiol_dioxygenase_ 58.1 36 0.00079 27.1 6.0 54 24-87 24-97 (188)
44 PF00576 Transthyretin: HIUase 52.7 30 0.00065 25.4 4.4 38 44-82 10-47 (112)
45 PF13717 zinc_ribbon_4: zinc-r 50.6 13 0.00028 21.8 1.7 30 32-62 2-31 (36)
46 cd05822 TLP_HIUase HIUase (5-h 46.9 76 0.0017 23.3 5.7 54 45-100 11-66 (112)
47 PF10731 Anophelin: Thrombin i 45.8 19 0.0004 24.0 2.0 16 1-16 1-17 (65)
48 KOG4088 Translocon-associated 44.3 63 0.0014 25.2 5.1 9 54-62 46-54 (167)
49 cd05469 Transthyretin_like Tra 39.9 1.2E+02 0.0027 22.3 5.9 41 45-86 11-51 (113)
50 cd05821 TLP_Transthyretin Tran 34.8 71 0.0015 23.9 4.0 38 45-83 17-54 (121)
51 smart00634 BID_1 Bacterial Ig- 34.5 1E+02 0.0022 21.0 4.6 40 46-87 30-70 (92)
52 cd03869 M14_CPX_like Peptidase 33.4 70 0.0015 28.6 4.4 44 27-88 329-373 (405)
53 PF05404 TRAP-delta: Transloco 33.3 2.4E+02 0.0053 22.3 7.9 58 27-86 43-101 (167)
54 TIGR03361 VI_Rhs_Vgr type VI s 32.6 1.1E+02 0.0025 27.4 5.7 45 50-101 358-407 (513)
55 TIGR02174 CXXU_selWTH selT/sel 32.4 44 0.00096 22.2 2.3 42 32-87 3-49 (72)
56 KOG4680 Uncharacterized conser 32.3 1.4E+02 0.003 23.2 5.2 22 65-86 54-78 (153)
57 PF07245 Phlebovirus_G2: Phleb 31.9 87 0.0019 28.9 4.8 56 50-110 353-411 (507)
58 TIGR00008 infA translation ini 31.1 1.7E+02 0.0036 19.7 5.0 35 26-75 4-38 (68)
59 PRK12442 translation initiatio 31.0 1.7E+02 0.0036 20.8 5.1 53 26-102 6-59 (87)
60 PF01835 A2M_N: MG2 domain; I 30.6 1.6E+02 0.0035 19.9 5.1 68 25-100 15-85 (99)
61 PF14686 fn3_3: Polysaccharide 27.9 49 0.0011 23.4 2.1 16 70-85 41-56 (95)
62 COG0361 InfA Translation initi 26.7 2.2E+02 0.0047 19.6 6.4 24 26-62 6-29 (75)
63 PF03785 Peptidase_C25_C: Pept 26.0 2.4E+02 0.0051 19.8 5.3 38 47-87 11-55 (81)
64 smart00095 TR_THY Transthyreti 25.7 1.7E+02 0.0037 21.8 4.7 39 44-83 13-51 (121)
65 PHA02123 hypothetical protein 24.1 1.2E+02 0.0027 22.6 3.6 31 71-101 39-75 (146)
66 PF12171 zf-C2H2_jaz: Zinc-fin 22.9 40 0.00087 17.8 0.7 11 34-44 3-13 (27)
67 PF08884 Flagellin_D3: Flagell 22.7 1.4E+02 0.0031 21.2 3.6 23 65-87 37-61 (90)
68 PF14289 DUF4369: Domain of un 22.6 2.5E+02 0.0053 18.8 6.9 53 25-98 11-64 (106)
69 PF11781 RRN7: RNA polymerase 22.4 32 0.00069 20.2 0.2 14 27-40 20-33 (36)
70 PF11119 DUF2633: Protein of u 22.1 70 0.0015 21.1 1.8 11 1-11 9-19 (59)
71 COG2351 Transthyretin-like pro 21.9 1.8E+02 0.0039 21.9 4.1 38 46-85 20-57 (124)
72 cd07692 Ig_CD3_epsilon Immunog 21.7 1.5E+02 0.0032 19.8 3.3 14 49-62 4-17 (65)
73 PRK15209 long polar fimbrial p 21.5 1.7E+02 0.0038 22.2 4.2 18 23-40 24-41 (174)
74 PRK09733 putative fimbrial pro 21.1 1.7E+02 0.0036 22.6 4.1 17 24-40 25-41 (181)
No 1
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=99.93 E-value=3.6e-26 Score=163.70 Aligned_cols=82 Identities=46% Similarity=0.794 Sum_probs=74.9
Q ss_pred EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecCC------CcCcceEEEEccCC
Q 031458 29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSED------HQDQLCDAVLVSSP 102 (159)
Q Consensus 29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~------~~~~~C~v~LvsSP 102 (159)
|+|+||||+|+++++ ..++||+||+|+|+|+++ ++.+.++.+++||++|+|+|++|++ +..+.|+|+|++||
T Consensus 1 V~G~V~C~~C~~~~~-~~~~~l~GA~V~v~C~~~-~~~~~~~~~~~Td~~G~F~i~l~~~~~~~~~~~~~~C~v~l~~sp 78 (97)
T PF01190_consen 1 VEGVVYCDDCSSGFS-RAAKPLPGAKVSVECKDG-NGGVVFSAEAKTDENGYFSIELPSDPGSSSPHLSSSCRVKLVSSP 78 (97)
T ss_pred CEEEEEeCCCCCCcc-ccCccCCCCEEEEECCCC-CCCcEEEEEEEeCCCCEEEEEecCccccccCCCCCCcEEEEeCCC
Confidence 799999999999776 788999999999999998 4557889999999999999999864 67899999999999
Q ss_pred CCCCCCCCCC
Q 031458 103 QNDCKTVAPG 112 (159)
Q Consensus 103 ~~~C~~~t~~ 112 (159)
++.|+++++.
T Consensus 79 ~~~C~~~~~~ 88 (97)
T PF01190_consen 79 DPSCNVPTNS 88 (97)
T ss_pred cCcCCCCcCC
Confidence 9999999974
No 2
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=96.43 E-value=0.0049 Score=41.37 Aligned_cols=45 Identities=22% Similarity=0.278 Sum_probs=29.8
Q ss_pred EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ecC
Q 031458 29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VSE 87 (159)
Q Consensus 29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~~ 87 (159)
|.|+|.=. ...||+||.|.|.=.+. +. .....||++|.|.+. ++.
T Consensus 2 I~G~V~d~---------~g~pv~~a~V~l~~~~~--~~---~~~~~Td~~G~f~~~~l~~ 47 (82)
T PF13620_consen 2 ISGTVTDA---------TGQPVPGATVTLTDQDG--GT---VYTTTTDSDGRFSFEGLPP 47 (82)
T ss_dssp EEEEEEET---------TSCBHTT-EEEET--TT--TE---CCEEE--TTSEEEEEEE-S
T ss_pred EEEEEEcC---------CCCCcCCEEEEEEEeeC--CC---EEEEEECCCceEEEEccCC
Confidence 78888832 24699999999987654 22 357899999999998 764
No 3
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=95.96 E-value=0.02 Score=39.12 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=31.0
Q ss_pred EEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458 29 VEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87 (159)
Q Consensus 29 V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 87 (159)
|.|.|. | .....||+||.|.+.=.+ ....||++|+|.|.++.
T Consensus 2 i~G~V~-d-------~~t~~pl~~a~V~~~~~~---------~~~~Td~~G~F~i~~~~ 43 (88)
T PF13715_consen 2 ISGKVV-D-------SDTGEPLPGATVYLKNTK---------KGTVTDENGRFSIKLPE 43 (88)
T ss_pred EEEEEE-E-------CCCCCCccCeEEEEeCCc---------ceEEECCCeEEEEEEcC
Confidence 678877 1 112579999999987222 34789999999999874
No 4
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=94.67 E-value=0.11 Score=35.70 Aligned_cols=46 Identities=28% Similarity=0.283 Sum_probs=34.5
Q ss_pred EEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 30 EGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 30 ~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
.|+..|. ..|.+|++|+|-=++.. ..-..-.+..||++|+|.|.-.
T Consensus 1 ~G~L~C~----------~~P~~~~~V~L~e~d~~-~~Ddll~~~~Td~~G~F~l~G~ 46 (80)
T PF01060_consen 1 KGQLMCG----------GKPAKNVKVKLWEDDYF-DPDDLLDETKTDSDGNFELSGS 46 (80)
T ss_pred CeEEEeC----------CccCCCCEEEEEECCCC-CCCceeEEEEECCCceEEEEEE
Confidence 3788884 36999999999888762 1112246799999999999864
No 5
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=94.32 E-value=0.075 Score=37.99 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=27.9
Q ss_pred CccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 46 ATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 46 ~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
...|++||+|+|-=. . ++++ -.+++||++|...+...
T Consensus 24 tg~Pv~ga~V~l~~~-~-~~~~--l~~g~TD~~G~a~~~~~ 60 (97)
T PF11974_consen 24 TGKPVAGAEVELYDS-R-NGQV--LASGKTDADGFASFDST 60 (97)
T ss_pred CCCccCCCEEEEEEC-C-CCcE--eeeeeeCCCceEEecCC
Confidence 468999999999530 2 2333 37899999999998876
No 6
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=93.68 E-value=0.12 Score=40.56 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=32.4
Q ss_pred CccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458 46 ATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87 (159)
Q Consensus 46 ~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 87 (159)
..+|++||+|.+.-.+.............||++|.+.|.++.
T Consensus 160 ~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~ 201 (215)
T PF10670_consen 160 DGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPR 201 (215)
T ss_pred CCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCC
Confidence 357999999999999863211112467899999999999974
No 7
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=93.29 E-value=0.74 Score=35.10 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=35.4
Q ss_pred EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
.|.|.|. ++....|.+|.+|+|+=.+. .+... ..++.||++|.|...++
T Consensus 28 ~Is~HVL--------Dt~~G~PA~gV~V~L~~~~~-~~w~~-l~~~~Td~dGR~~~l~~ 76 (137)
T PRK15036 28 ILSVHIL--------NQQTGKPAADVTVTLEKKAD-NGWLQ-LNTAKTDKDGRIKALWP 76 (137)
T ss_pred CeEEEEE--------eCCCCcCCCCCEEEEEEccC-CceEE-EEEEEECCCCCCccccC
Confidence 4888888 23456899999999975543 23232 47899999999986444
No 8
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=92.10 E-value=0.74 Score=32.52 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe-cCCCcCcceEEEEccC
Q 031458 25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV-SEDHQDQLCDAVLVSS 101 (159)
Q Consensus 25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l-~~~~~~~~C~v~LvsS 101 (159)
+..+|+|+|. . ...|++||.|+|-=... + |..+-.|+++|.|+.-. |+. ..++.+++
T Consensus 6 ke~VItG~V~-~---------~G~Pv~gAyVRLLD~sg---E--FtaEvvts~~G~FRFfaapG~-----WtvRal~~ 63 (85)
T PF07210_consen 6 KETVITGRVT-R---------DGEPVGGAYVRLLDSSG---E--FTAEVVTSATGDFRFFAAPGS-----WTVRALSR 63 (85)
T ss_pred ceEEEEEEEe-c---------CCcCCCCeEEEEEcCCC---C--eEEEEEecCCccEEEEeCCCc-----eEEEEEcc
Confidence 3579999998 2 23599999999975543 2 46899999999999765 343 66665544
No 9
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=90.91 E-value=1.7 Score=33.12 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=33.9
Q ss_pred CCccccCCCEEEEEecCCCCceE--EEEEEEEcCCCceEEEEec-CC
Q 031458 45 PATTYIAGAKVKVECKDRKSMQV--VYSREGKTDSTGTYKILVS-ED 88 (159)
Q Consensus 45 ~~~~pi~GA~V~v~C~~~~~~~v--~~~~~~~TD~~G~F~i~l~-~~ 88 (159)
...+|++|+.+.|.=+... ..+ .+.....||+.|+|.+++. +.
T Consensus 12 g~G~pv~g~~I~L~A~~tS-~~Vv~~t~as~~t~~~G~Ys~~~epG~ 57 (134)
T PF08400_consen 12 GAGKPVPGCTITLKARRTS-STVVVGTVASVVTGEAGEYSFDVEPGV 57 (134)
T ss_pred CCCCcCCCCEEEEEEccCc-hheEEEEEEEEEcCCCceEEEEecCCe
Confidence 3468999999999998863 333 3467889999999999985 44
No 10
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=90.67 E-value=1.2 Score=33.95 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=41.4
Q ss_pred CCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE------------EEEEEEEcCCCceEEEEe--cCC
Q 031458 23 NPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV------------VYSREGKTDSTGTYKILV--SED 88 (159)
Q Consensus 23 ~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v------------~~~~~~~TD~~G~F~i~l--~~~ 88 (159)
.+.++.|.|+|.=. ...|++||.|.|---+. +|.. .......||++|.|.+.. |+.
T Consensus 8 ~G~~l~l~G~V~D~---------~g~pv~~A~VeiW~~d~-~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~ 77 (146)
T cd00421 8 PGEPLTLTGTVLDG---------DGCPVPDALVEIWQADA-DGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGP 77 (146)
T ss_pred CCCEEEEEEEEECC---------CCCCCCCcEEEEEecCC-CCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCC
Confidence 34679999999922 23699999999987776 2221 235678999999999863 554
Q ss_pred Cc
Q 031458 89 HQ 90 (159)
Q Consensus 89 ~~ 90 (159)
..
T Consensus 78 Y~ 79 (146)
T cd00421 78 YP 79 (146)
T ss_pred CC
Confidence 33
No 11
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=90.40 E-value=1 Score=38.34 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE----------EEEEEEEcCCCceEEEE
Q 031458 25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV----------VYSREGKTDSTGTYKIL 84 (159)
Q Consensus 25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 84 (159)
.++.|+|+|. |. ...||+||.|-|=..|. +|.. .+.....||++|.|.+.
T Consensus 131 ~pl~v~G~V~-D~--------~G~Pv~gA~VdiWqada-~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~ 190 (281)
T TIGR02438 131 TPLVFSGQVT-DL--------DGNGLAGAKVELWHADD-DGFYSQFAPGIPEWNLRGTIIADDEGRFEIT 190 (281)
T ss_pred CEEEEEEEEE-cC--------CCCCcCCCEEEEEecCC-CCCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 4688999998 31 23699999999955554 2332 23567899999998875
No 12
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=88.93 E-value=0.97 Score=39.29 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=31.6
Q ss_pred EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
.|.|.|.-. ...||+||+|.|+ +. .....||++|.|.+.++
T Consensus 299 ~i~G~V~d~---------~g~pl~~A~V~i~--~~-------~~~~~Td~~G~f~~~l~ 339 (374)
T cd03858 299 GIKGFVRDA---------NGNPIANATISVE--GI-------NHDVTTAEDGDYWRLLL 339 (374)
T ss_pred ceEEEEECC---------CCCccCCeEEEEe--cc-------eeeeEECCCceEEEecC
Confidence 789999843 1359999999993 21 23568999999999876
No 13
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=88.93 E-value=0.78 Score=29.78 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=24.7
Q ss_pred cCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ec
Q 031458 50 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VS 86 (159)
Q Consensus 50 i~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~ 86 (159)
|+||++.|.-.+.. .+ ...+..||++|.|.+. |+
T Consensus 1 L~Ga~f~L~~~~~~--~~-~~~~~~Td~~G~~~f~~L~ 35 (70)
T PF05738_consen 1 LAGATFELYDEDGN--EV-IEVTVTTDENGKYTFKNLP 35 (70)
T ss_dssp -STEEEEEEETTSE--EE-EEEEEEGGTTSEEEEEEEE
T ss_pred CCCeEEEEEECCCC--EE-EEEEEEECCCCEEEEeecC
Confidence 68999999988762 12 1126899999999997 43
No 14
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=86.26 E-value=0.96 Score=27.02 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=12.9
Q ss_pred hhhcccCCCCCeEEEEEEEcccC
Q 031458 16 LVSAVRPNPKPFSVEGRVYCDTC 38 (159)
Q Consensus 16 ~~~~~~~~~~~~~V~G~VyCd~C 38 (159)
++++....++.++|.|. |.+|
T Consensus 15 l~~a~~~~pG~ViING~--C~dC 35 (36)
T PF08194_consen 15 LAAAVPATPGNVIINGK--CIDC 35 (36)
T ss_pred HHhcccCCCCeEEECce--eeeC
Confidence 34444333566899884 7777
No 15
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=85.92 E-value=1.4 Score=38.74 Aligned_cols=44 Identities=23% Similarity=0.135 Sum_probs=32.5
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 87 (159)
..|.|.|.=+ ....||+||+|.|+=.+ ...+||.+|.|.+.++.
T Consensus 297 ~gI~G~V~D~--------~~g~pl~~AtV~V~g~~---------~~~~Td~~G~f~~~l~p 340 (375)
T cd03863 297 RGVRGFVLDA--------TDGRGILNATISVADIN---------HPVTTYKDGDYWRLLVP 340 (375)
T ss_pred CeEEEEEEeC--------CCCCCCCCeEEEEecCc---------CceEECCCccEEEccCC
Confidence 4799999821 12469999999997221 23579999999998763
No 16
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=85.70 E-value=2.9 Score=34.99 Aligned_cols=52 Identities=29% Similarity=0.371 Sum_probs=37.2
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCce----------EEEEEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------VVYSREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|. |. ...||+||.|-|=-.|. +|. ..+.....||++|.|.+..
T Consensus 97 G~~l~l~G~V~-D~--------~G~Pv~~A~VeiWqad~-~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~T 158 (247)
T cd03462 97 HKPLLFRGTVK-DL--------AGAPVAGAVIDVWHSTP-DGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRT 158 (247)
T ss_pred CCEEEEEEEEE-cC--------CCCCcCCcEEEEECCCC-CCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEE
Confidence 34689999998 31 23599999999976665 232 2235677899999998863
No 17
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=1.2 Score=43.47 Aligned_cols=41 Identities=41% Similarity=0.545 Sum_probs=31.3
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV 85 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l 85 (159)
+.|.|+|.= +....|++||+|.|.=+ ..++||+.|||+++-
T Consensus 316 fSvtGRVl~--------g~~g~~l~gvvvlvngk----------~~~kTdaqGyykLen 356 (1165)
T KOG1948|consen 316 FSVTGRVLV--------GSKGLPLSGVVVLVNGK----------SGGKTDAQGYYKLEN 356 (1165)
T ss_pred EEeeeeEEe--------CCCCCCccceEEEEcCc----------ccceEcccceEEeee
Confidence 567788872 24567999999998433 347999999999975
No 18
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=85.20 E-value=1.6 Score=34.75 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=35.6
Q ss_pred CCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCC------Cc----eEEEEEEEEcCCCceEEEE
Q 031458 23 NPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRK------SM----QVVYSREGKTDSTGTYKIL 84 (159)
Q Consensus 23 ~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~------~~----~v~~~~~~~TD~~G~F~i~ 84 (159)
.+.++.|.|+|+=.+| .||+||.|-| +|.... .+ ...+.....||++|.|.+.
T Consensus 26 ~G~~l~l~G~V~D~~g---------~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~ 89 (183)
T PF00775_consen 26 PGEPLVLHGRVIDTDG---------KPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFR 89 (183)
T ss_dssp SS-EEEEEEEEEETTS---------SB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEE
T ss_pred CCCEEEEEEEEECCCC---------CCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEE
Confidence 3457999999994333 5999999999 887542 00 1234578899999999865
No 19
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=84.82 E-value=1.7 Score=37.87 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=31.0
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
..|.|.|.= ....|++||+|.|+-.+ ....||++|.|...++
T Consensus 296 ~~i~G~V~d---------~~g~pv~~A~V~v~~~~---------~~~~td~~G~y~~~l~ 337 (372)
T cd03868 296 IGVKGFVRD---------ASGNPIEDATIMVAGID---------HNVTTAKFGDYWRLLL 337 (372)
T ss_pred CceEEEEEc---------CCCCcCCCcEEEEEecc---------cceEeCCCceEEecCC
Confidence 368999981 12369999999997433 2359999999986665
No 20
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=84.77 E-value=4.3 Score=33.39 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=37.1
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEE---------------EEEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVV---------------YSREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~---------------~~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|+=.+ ..||+||.|.|=--|. +|... ......||++|.|.+..
T Consensus 63 G~~i~l~G~V~D~~---------G~PV~~A~VEIWQad~-~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~T 129 (220)
T cd03464 63 GERIIVHGRVLDED---------GRPVPNTLVEIWQANA-AGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRT 129 (220)
T ss_pred CCEEEEEEEEECCC---------CCCCCCCEEEEEecCC-CCcccCccCCcccccCCCCCCEEEEEECCCccEEEEE
Confidence 45699999999322 3599999999976655 23221 24566999999998863
No 21
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=84.65 E-value=1.7 Score=36.66 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=28.6
Q ss_pred ccccCCCEEEEEecCC-------CCce-EEEEEEEEcCCCceEEEEec
Q 031458 47 TTYIAGAKVKVECKDR-------KSMQ-VVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 47 ~~pi~GA~V~v~C~~~-------~~~~-v~~~~~~~TD~~G~F~i~l~ 86 (159)
.+|++||+|.++-.+. .++. ..-.....||.+|+|.+...
T Consensus 182 GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~ 229 (264)
T COG5266 182 GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPL 229 (264)
T ss_pred CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEc
Confidence 5799999999995541 1111 11136789999999999865
No 22
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=84.45 E-value=3.5 Score=35.04 Aligned_cols=51 Identities=31% Similarity=0.330 Sum_probs=37.0
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCce----------EEEEEEEEcCCCceEEEE
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------VVYSREGKTDSTGTYKIL 84 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~G~F~i~ 84 (159)
+.++.|+|+|. |. ...||+||.|-|=-.|.. |. ......-.||++|.|...
T Consensus 118 G~~l~v~G~V~-D~--------~G~Pv~gA~VeiWqad~~-G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~ 178 (277)
T cd03461 118 GEPCFVHGRVT-DT--------DGKPLPGATVDVWQADPN-GLYDVQDPDQPEFNLRGKFRTDEDGRYAFR 178 (277)
T ss_pred CCEEEEEEEEE-cC--------CCCCcCCcEEEEECcCCC-CCcCCCCCCCCCCCCeEEEEeCCCCCEEEE
Confidence 34689999999 31 236999999999776652 21 223567899999998875
No 23
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=84.37 E-value=4 Score=32.62 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE------------EE--EEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV------------VY--SREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v------------~~--~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|.=.. ..||+||.|-|=.-|.. |.. .| ...-.||++|.|....
T Consensus 34 G~~l~l~G~V~D~~---------g~Pi~gA~VeiWqad~~-G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~T 99 (185)
T cd03463 34 GERITLEGRVYDGD---------GAPVPDAMLEIWQADAA-GRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTT 99 (185)
T ss_pred CCEEEEEEEEECCC---------CCCCCCCEEEEEcCCCC-CccCCcCCcccccCCCCCcEEEEEECCCCCEEEEE
Confidence 45799999999222 35999999999777652 211 22 3456799999999864
No 24
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=83.51 E-value=4.8 Score=31.24 Aligned_cols=52 Identities=21% Similarity=0.217 Sum_probs=37.5
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE-------------EE--EEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV-------------VY--SREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v-------------~~--~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|.=.+ ..||+||.|.|=--|.. |.. .| .....||++|.|.+..
T Consensus 13 G~~l~l~g~V~D~~---------g~Pv~~A~veiWqad~~-G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~T 79 (158)
T cd03459 13 GERIILEGRVLDGD---------GRPVPDALVEIWQADAA-GRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRT 79 (158)
T ss_pred CcEEEEEEEEECCC---------CCCCCCCEEEEEccCCC-CccCCccCCcccccCCCCCceeEEEECCCCcEEEEE
Confidence 35799999999332 35999999999766652 211 22 3567899999999864
No 25
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=83.30 E-value=3.1 Score=36.60 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=31.6
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
..|.|.|. |. ...||+||+|.|+ +. .. .....||++|.|.+.++
T Consensus 295 ~gI~G~V~-D~--------~g~pi~~A~V~v~--g~--~~---~~~~~T~~~G~y~~~l~ 338 (376)
T cd03866 295 LGVKGQVF-DS--------NGNPIPNAIVEVK--GR--KH---ICPYRTNVNGEYFLLLL 338 (376)
T ss_pred CceEEEEE-CC--------CCCccCCeEEEEE--cC--Cc---eeEEEECCCceEEEecC
Confidence 46999998 42 1259999999997 22 11 12458999999988765
No 26
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=82.04 E-value=4.9 Score=29.59 Aligned_cols=41 Identities=24% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 44 TPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 44 t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
+....|-+|+.|.|...+.+ +.. ...++.||++|...-.++
T Consensus 10 t~~G~PAagv~V~L~~~~~~-~~~-~i~~~~Tn~DGR~~~~l~ 50 (112)
T TIGR02962 10 TTSGKPAAGVPVTLYRLDGS-GWT-PLAEGVTNADGRCPDLLP 50 (112)
T ss_pred CCCCccCCCCEEEEEEecCC-CeE-EEEEEEECCCCCCcCccc
Confidence 34568999999999987652 322 346899999999875444
No 27
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.88 E-value=6.4 Score=32.32 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=36.8
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEE---------------EEEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVV---------------YSREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~---------------~~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|.=.. ..||+||.|.|=--|. +|... ......||++|.|.+..
T Consensus 58 G~~i~l~G~V~D~~---------g~PV~~A~VEIWQada-~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~T 124 (220)
T TIGR02422 58 GERIIVHGRVLDED---------GRPVPNTLVEVWQANA-AGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRT 124 (220)
T ss_pred CCEEEEEEEEECCC---------CCCCCCCEEEEEecCC-CCcccCccCccccccCCCCCCEEEEEECCCccEEEEE
Confidence 34699999999322 3599999999966654 22211 24567799999998863
No 28
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.58 E-value=6.3 Score=32.57 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=37.6
Q ss_pred CCeEEEEEEEcccCCCCCCCCCccccCCCEEEE-EecCCCCceEE--------------EEEEEEcCCCceEEEEe
Q 031458 25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV-ECKDRKSMQVV--------------YSREGKTDSTGTYKILV 85 (159)
Q Consensus 25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v-~C~~~~~~~v~--------------~~~~~~TD~~G~F~i~l 85 (159)
.++.|+|+|+=.. ..|++||.|.| +|... |+.. -.....||++|.|...-
T Consensus 71 e~i~l~G~VlD~~---------G~Pv~~A~VEiWQAda~--GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~T 135 (226)
T COG3485 71 ERILLEGRVLDGN---------GRPVPDALVEIWQADAD--GRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRT 135 (226)
T ss_pred ceEEEEEEEECCC---------CCCCCCCEEEEEEcCCC--CcccCccccccCcCccccceEEEEeCCCceEEEEE
Confidence 5799999999444 36999999999 66544 2222 35677899999999863
No 29
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=81.47 E-value=5.9 Score=31.85 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=36.7
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE-------------EE--EEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV-------------VY--SREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v-------------~~--~~~~~TD~~G~F~i~l 85 (159)
+.++.|.|+|. |. ...||+||.|-|=--|.. |.. .| .....||++|.|.+..
T Consensus 37 G~~l~l~G~V~-D~--------~g~Pv~~A~VeiWqad~~-G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~T 103 (193)
T TIGR02423 37 GERIRLEGRVL-DG--------DGHPVPDALIEIWQADAA-GRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFET 103 (193)
T ss_pred CCEEEEEEEEE-CC--------CCCCCCCCEEEEEccCCC-CccCCccCCcccccCCCCCCeEEEEECCCCCEEEEE
Confidence 45799999999 32 135999999999766541 221 11 3456899999998863
No 30
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=79.14 E-value=3.9 Score=36.13 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=31.0
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
..|.|.|.= ....||+||.|.|+ +. .....||++|.|...++
T Consensus 318 ~~i~G~V~D---------~~g~pi~~A~V~v~--g~-------~~~~~Td~~G~y~~~l~ 359 (395)
T cd03867 318 RGIKGFVKD---------KDGNPIKGARISVR--GI-------RHDITTAEDGDYWRLLP 359 (395)
T ss_pred ceeEEEEEc---------CCCCccCCeEEEEe--cc-------ccceEECCCceEEEecC
Confidence 469999982 12369999999996 22 13468999999986665
No 31
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=78.96 E-value=6 Score=33.05 Aligned_cols=52 Identities=27% Similarity=0.353 Sum_probs=37.5
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCce----------EEEEEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------VVYSREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|. |. ...||+||.|-|=-.|.+ |. ..+.....||++|.|.+..
T Consensus 96 G~~l~v~G~V~-D~--------~G~Pv~~A~VeiWqad~~-G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~T 157 (246)
T TIGR02465 96 HKPLLIRGTVR-DL--------SGTPVAGAVIDVWHSTPD-GKYSGFHDNIPDDYYRGKLVTAADGSYEVRT 157 (246)
T ss_pred CcEEEEEEEEE-cC--------CCCCcCCcEEEEECCCCC-CCCCCCCCCCCCCCCeEEEEECCCCCEEEEE
Confidence 34688999998 32 235999999999776652 22 2235778999999999863
No 32
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=78.67 E-value=7.7 Score=33.12 Aligned_cols=52 Identities=29% Similarity=0.313 Sum_probs=37.5
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE----------EEEEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV----------VYSREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~l 85 (159)
+.++.|+|+|. |. ...||+||.|-|=..|.. |.. .....-.||++|.|.+..
T Consensus 126 G~pl~v~G~V~-D~--------~G~PI~gA~VeIWqad~~-G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~T 187 (285)
T TIGR02439 126 GETLFLHGQVT-DA--------DGKPIAGAKVELWHANTK-GNYSHFDKSQSEFNLRRTIITDAEGRYRARS 187 (285)
T ss_pred CcEEEEEEEEE-CC--------CCCCcCCcEEEEEccCCC-CCcCCCCCCCCCCCceEEEEECCCCCEEEEE
Confidence 34688999998 31 135999999999777652 322 245778999999988853
No 33
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=78.02 E-value=5.4 Score=34.94 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=31.7
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 87 (159)
..|.|.|. |. ...||+||+|.|+ +. . ...||++|.|.+.++.
T Consensus 287 ~gI~G~V~-d~--------~g~pi~~A~V~v~--g~-~-------~~~T~~~G~y~~~L~p 328 (363)
T cd06245 287 KGVHGVVT-DK--------AGKPISGATIVLN--GG-H-------RVYTKEGGYFHVLLAP 328 (363)
T ss_pred cEEEEEEE-cC--------CCCCccceEEEEe--CC-C-------ceEeCCCcEEEEecCC
Confidence 68999997 21 1369999999997 21 1 3479999999998763
No 34
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=75.75 E-value=8.9 Score=32.70 Aligned_cols=50 Identities=28% Similarity=0.318 Sum_probs=36.6
Q ss_pred CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceE----------EEEEEEEcCCCceEEEE
Q 031458 25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQV----------VYSREGKTDSTGTYKIL 84 (159)
Q Consensus 25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v----------~~~~~~~TD~~G~F~i~ 84 (159)
.++.|+|+|. |. ...||+||.|-|=..|. +|.. .....-.||++|.|...
T Consensus 123 epl~l~G~V~-D~--------~G~PI~~A~VeiWqad~-~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~ 182 (282)
T cd03460 123 ETLVMHGTVT-DT--------DGKPVPGAKVEVWHANS-KGFYSHFDPTQSPFNLRRSIITDADGRYRFR 182 (282)
T ss_pred CEEEEEEEEE-CC--------CCCCcCCcEEEEECCCC-CCCcCCCCCCCCCCCCceEEEeCCCCCEEEE
Confidence 4688999998 31 23599999999977775 2322 23567889999998875
No 35
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=75.23 E-value=3.1 Score=29.47 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=30.6
Q ss_pred CCCCeEEEEEEEcccCCCCCCCCCccccCCCEEEE--EecCCCCceEEEE-EEEEcCCCceEEEEecCC
Q 031458 23 NPKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKV--ECKDRKSMQVVYS-REGKTDSTGTYKILVSED 88 (159)
Q Consensus 23 ~~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v--~C~~~~~~~v~~~-~~~~TD~~G~F~i~l~~~ 88 (159)
+.....+.-.|. | .+..||+|..|.+ .-.. +.+.-. ....||++|.+.+.+.+.
T Consensus 21 g~~~~tltatV~-D--------~~gnpv~g~~V~f~~~~~~---~~l~~~~~~~~Td~~G~a~~tltst 77 (100)
T PF02369_consen 21 GSDTNTLTATVT-D--------ANGNPVPGQPVTFSSSSSG---GTLSPTNTSATTDSNGIATVTLTST 77 (100)
T ss_dssp SSS-EEEEEEEE-E--------TTSEB-TS-EEEE--EESS---SEES-CEE-EEE-TTSEEEEEEE-S
T ss_pred CcCcEEEEEEEE-c--------CCCCCCCCCEEEEEEcCCC---cEEecCccccEECCCEEEEEEEEec
Confidence 334567777776 2 2346999999999 2222 222211 158999999999998653
No 36
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones]
Probab=74.36 E-value=16 Score=36.07 Aligned_cols=104 Identities=15% Similarity=0.239 Sum_probs=60.0
Q ss_pred CeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEE-ecCCCcCcceEEEEccCCCC
Q 031458 26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKIL-VSEDHQDQLCDAVLVSSPQN 104 (159)
Q Consensus 26 ~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~-l~~~~~~~~C~v~LvsSP~~ 104 (159)
.++.+|+-.=-+|.-.-......|..|.-+.-.=.+. .-+..+++||++|.|+|. |-. .|.-.+.-++..
T Consensus 897 ~vvl~gkRvAySayGtvssLsGdp~~gVaieA~sdn~----~~y~eeattdenG~yRiRGL~P-----dc~Y~V~vk~~~ 967 (1165)
T KOG1948|consen 897 NVVLKGKRVAYSAYGTVSSLSGDPMKGVAIEALSDNC----DLYQEEATTDENGTYRIRGLLP-----DCEYQVHVKSYA 967 (1165)
T ss_pred EEEEEEEEEEEEeeeehhhccCCcccCeEEEEecCCC----CccccccccccCCcEEEeccCC-----CceEEEEEeecc
Confidence 3888999887788644444566889886554433332 345689999999999996 222 277666656554
Q ss_pred CCCCCCCCCcceeEEee-eccCcceeeeeccccceeccCC
Q 031458 105 DCKTVAPGRERSRVILT-SYNGISSETRYANSMGFMKAEP 143 (159)
Q Consensus 105 ~C~~~t~~~~~a~v~L~-~~~gi~~~~~~a~~l~F~~~~p 143 (159)
+ +.+..........+. -|+. ++-.|-|.|++.+.
T Consensus 968 ~-n~~iers~P~s~tv~vgneD----v~glnf~af~q~kt 1002 (1165)
T KOG1948|consen 968 D-NSPIERSFPRSFTVSVGNED----VKGLNFMAFIQAKT 1002 (1165)
T ss_pred C-CCcccccCCceEEEEecccc----cCCceEEEEeccce
Confidence 4 223222112222332 1222 33356777776544
No 37
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=72.45 E-value=14 Score=31.12 Aligned_cols=51 Identities=31% Similarity=0.349 Sum_probs=37.1
Q ss_pred CCCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCce----------EEEEEEEEcCCCceEEEE
Q 031458 24 PKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------VVYSREGKTDSTGTYKIL 84 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------v~~~~~~~TD~~G~F~i~ 84 (159)
+.++.|+|+|. |. ...||+||.|-|=-.|.. |. ......-.||++|.|.+.
T Consensus 102 G~~l~l~G~V~-D~--------~G~Pv~~A~VeiWqad~~-G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~ 162 (256)
T cd03458 102 GEPLFVHGTVT-DT--------DGKPLAGATVDVWHADPD-GFYSQQDPDQPEFNLRGKFRTDEDGRYRFR 162 (256)
T ss_pred CcEEEEEEEEE-cC--------CCCCCCCcEEEEEccCCC-CCcCCCCCCCCCCCCEEEEEeCCCCCEEEE
Confidence 34689999999 31 236999999999766652 22 233567899999998885
No 38
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=68.33 E-value=8.5 Score=34.34 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=30.2
Q ss_pred EEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 28 SVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 28 ~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
-|.|.|.-.+ ..||+||+|.|+ +.. ....||++|.|.+.++
T Consensus 327 gI~G~V~D~~---------g~pI~~AtV~V~--g~~-------~~~~T~~~G~Y~~~L~ 367 (402)
T cd03865 327 GVKGFVKDLQ---------GNPIANATISVE--GID-------HDITSAKDGDYWRLLA 367 (402)
T ss_pred ceEEEEECCC---------CCcCCCeEEEEE--cCc-------cccEECCCeeEEECCC
Confidence 4999998431 259999999998 221 1247999999998665
No 39
>PF13115 YtkA: YtkA-like
Probab=66.81 E-value=18 Score=24.18 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=29.5
Q ss_pred CCccccCCCEEEEEecCCC-C--ceEEEEEEEEcCCCceEEEEec
Q 031458 45 PATTYIAGAKVKVECKDRK-S--MQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 45 ~~~~pi~GA~V~v~C~~~~-~--~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
....|+.||.|.++-...+ . ............+.|.|.+.+.
T Consensus 30 ~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~ 74 (86)
T PF13115_consen 30 QGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVT 74 (86)
T ss_pred CCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEee
Confidence 3457999999999999763 1 1223344555578999999863
No 40
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=63.00 E-value=15 Score=32.34 Aligned_cols=52 Identities=19% Similarity=0.123 Sum_probs=34.4
Q ss_pred CccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecCCCcC-cceEEEEccCCC
Q 031458 46 ATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQD-QLCDAVLVSSPQ 103 (159)
Q Consensus 46 ~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~~~~-~~C~v~LvsSP~ 103 (159)
.+.+++|..|.++=++.+ +..+.||.+|||.|...-++.. +.-.+..+.++.
T Consensus 92 ls~ev~~vpV~~T~~~~~------tv~~~Td~~Gyf~i~~~~~~~~~~g~~av~lq~eg 144 (373)
T COG4850 92 LSDEVPNVPVYVTLKNGA------TVNVATDDEGYFIIHAVIPFPPTKGNHAVRLQSEG 144 (373)
T ss_pred ccccCCCceEEEecCCCc------eEEeEecCCCceEEEEecccCCCCCceeEEeecCC
Confidence 356788888887776542 3678999999999987654432 233444444444
No 41
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=61.44 E-value=6.4 Score=28.19 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=5.6
Q ss_pred Ch-hHHHHHHHH
Q 031458 1 MA-RTLLLIALC 11 (159)
Q Consensus 1 ma-~~~~~~~l~ 11 (159)
|| ++++|++|+
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 77 445544443
No 42
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=58.64 E-value=18 Score=32.13 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=29.5
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
..|.|.|.-. ...||+||.|.|+ +.+ ....||++|.|.-.++
T Consensus 316 ~gI~G~V~D~---------~g~pi~~A~V~v~--g~~-------~~~~T~~~G~y~r~l~ 357 (392)
T cd03864 316 QGIKGMVTDE---------NNNGIANAVISVS--GIS-------HDVTSGTLGDYFRLLL 357 (392)
T ss_pred CeEEEEEECC---------CCCccCCeEEEEE--CCc-------cceEECCCCcEEecCC
Confidence 4799999842 1359999999995 221 2468999999943343
No 43
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=58.11 E-value=36 Score=27.12 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=37.6
Q ss_pred CCCeEEEEEEEc-ccCCCCCCCCCccccCCCEEEEEecCCCCce----------------EE-EEEEEEcCCCceEEEEe
Q 031458 24 PKPFSVEGRVYC-DTCQAGFETPATTYIAGAKVKVECKDRKSMQ----------------VV-YSREGKTDSTGTYKILV 85 (159)
Q Consensus 24 ~~~~~V~G~VyC-d~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~----------------v~-~~~~~~TD~~G~F~i~l 85 (159)
+.|+.++|+|.= ++| .||+||.|-|=--|.. |. .. +.....||++|.|....
T Consensus 24 G~pl~l~g~V~D~~~c---------~Pv~~a~VdiWh~da~-G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~T 93 (188)
T cd03457 24 GVPLTLDLQVVDVATC---------CPPPNAAVDIWHCDAT-GVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTT 93 (188)
T ss_pred CCEEEEEEEEEeCCCC---------ccCCCeEEEEecCCCC-CCCCCccCCccccccccCCCcCEEEEEECCCccEEEEE
Confidence 457999999992 124 5999999999554441 11 11 35678999999988753
Q ss_pred --cC
Q 031458 86 --SE 87 (159)
Q Consensus 86 --~~ 87 (159)
|+
T Consensus 94 I~PG 97 (188)
T cd03457 94 IFPG 97 (188)
T ss_pred ECCC
Confidence 54
No 44
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=52.71 E-value=30 Score=25.38 Aligned_cols=38 Identities=29% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEE
Q 031458 44 TPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYK 82 (159)
Q Consensus 44 t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~ 82 (159)
+....|-.|..|+|.=.+. .+.-....+++||++|...
T Consensus 10 t~~G~PA~gv~V~L~~~~~-~~~~~~l~~~~Td~DGR~~ 47 (112)
T PF00576_consen 10 TTTGKPAAGVPVTLYRLDS-DGSWTLLAEGVTDADGRIK 47 (112)
T ss_dssp TTTTEE-TT-EEEEEEEET-TSCEEEEEEEEBETTSEES
T ss_pred CCCCCCccCCEEEEEEecC-CCCcEEEEEEEECCCCccc
Confidence 3456899999999987774 2334445799999999874
No 45
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=50.60 E-value=13 Score=21.77 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=22.2
Q ss_pred EEEcccCCCCCCCCCccccCCCEEEEEecCC
Q 031458 32 RVYCDTCQAGFETPATTYIAGAKVKVECKDR 62 (159)
Q Consensus 32 ~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~ 62 (159)
.|-|..|...|.- ...-|++..++|+|..=
T Consensus 2 ~i~Cp~C~~~y~i-~d~~ip~~g~~v~C~~C 31 (36)
T PF13717_consen 2 IITCPNCQAKYEI-DDEKIPPKGRKVRCSKC 31 (36)
T ss_pred EEECCCCCCEEeC-CHHHCCCCCcEEECCCC
Confidence 3789999887753 23458888889999863
No 46
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=46.95 E-value=76 Score=23.26 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=34.8
Q ss_pred CCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecCC--CcCcceEEEEcc
Q 031458 45 PATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSED--HQDQLCDAVLVS 100 (159)
Q Consensus 45 ~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~--~~~~~C~v~Lvs 100 (159)
....|-.|..|+|.=.+. .+. ....++.||++|...-.++.. ......++....
T Consensus 11 ~~G~PAagv~V~L~~~~~-~~~-~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~ 66 (112)
T cd05822 11 ATGKPAAGVAVTLYRLDG-NGW-TLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDT 66 (112)
T ss_pred CCCcccCCCEEEEEEecC-CCe-EEEEEEEECCCCCccCcccccccCCCeeEEEEEEh
Confidence 445789999999977655 232 334789999999987655532 223444444433
No 47
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=45.77 E-value=19 Score=24.02 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=11.0
Q ss_pred Ch-hHHHHHHHHHHhhh
Q 031458 1 MA-RTLLLIALCVLPAL 16 (159)
Q Consensus 1 ma-~~~~~~~l~~~~~~ 16 (159)
|| ++++|+.||+..+.
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 88 46667778876554
No 48
>KOG4088 consensus Translocon-associated complex TRAP, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.31 E-value=63 Score=25.19 Aligned_cols=9 Identities=11% Similarity=0.704 Sum_probs=5.6
Q ss_pred EEEEEecCC
Q 031458 54 KVKVECKDR 62 (159)
Q Consensus 54 ~V~v~C~~~ 62 (159)
+..|+|+++
T Consensus 46 EftLqCsn~ 54 (167)
T KOG4088|consen 46 EFTLQCSNN 54 (167)
T ss_pred EEEEEeCCC
Confidence 456677764
No 49
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=39.89 E-value=1.2e+02 Score=22.29 Aligned_cols=41 Identities=22% Similarity=0.142 Sum_probs=27.7
Q ss_pred CCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec
Q 031458 45 PATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 45 ~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
....|-+|..|+|.=.+.. +.-..-.++.||++|...-.++
T Consensus 11 ~~G~PAagv~V~L~~~~~~-~~w~~l~~~~Tn~DGR~~~~l~ 51 (113)
T cd05469 11 VRGSPAANVAIKVFRKTAD-GSWEIFATGKTNEDGELHGLIT 51 (113)
T ss_pred CCCccCCCCEEEEEEecCC-CceEEEEEEEECCCCCccCccc
Confidence 4567999999999754421 2223347899999998864443
No 50
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=34.78 E-value=71 Score=23.87 Aligned_cols=38 Identities=26% Similarity=0.053 Sum_probs=25.6
Q ss_pred CCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEE
Q 031458 45 PATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKI 83 (159)
Q Consensus 45 ~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i 83 (159)
....|=.|..|+|.=.+. .+.-..-.++.||++|...-
T Consensus 17 ~~G~PAaGV~V~L~~~~~-~~~w~~l~~~~Tn~DGR~~~ 54 (121)
T cd05821 17 VRGSPAANVAVKVFKKTA-DGSWEPFASGKTTETGEIHG 54 (121)
T ss_pred CCCccCCCCEEEEEEecC-CCceEEEEEEEECCCCCCCC
Confidence 456799999999964331 12223346899999998853
No 51
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=34.47 E-value=1e+02 Score=21.01 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=27.4
Q ss_pred CccccCCCEEEEEecCCCCceEEE-EEEEEcCCCceEEEEecC
Q 031458 46 ATTYIAGAKVKVECKDRKSMQVVY-SREGKTDSTGTYKILVSE 87 (159)
Q Consensus 46 ~~~pi~GA~V~v~C~~~~~~~v~~-~~~~~TD~~G~F~i~l~~ 87 (159)
...|++|+.|.++=... +...+ .....||++|...+.+.+
T Consensus 30 ~Gnpv~~~~V~f~~~~~--~~~~~~~~~~~Td~~G~a~~~l~~ 70 (92)
T smart00634 30 NGNPVAGQEVTFTTPSG--GALTLSKGTATTDANGIATVTLTS 70 (92)
T ss_pred CCCCcCCCEEEEEECCC--ceeeccCCeeeeCCCCEEEEEEEC
Confidence 45699999988776543 11111 245689999999998864
No 52
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=33.44 E-value=70 Score=28.64 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=28.9
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEE-EEecCC
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYK-ILVSED 88 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~-i~l~~~ 88 (159)
.-|.|.|.= ....||++|+|.|+=.+. .-+|.++|.|. +.+|+.
T Consensus 329 ~GikG~V~d---------~~g~~i~~a~i~v~g~~~---------~v~t~~~GdywRll~pG~ 373 (405)
T cd03869 329 RGIKGVVRD---------KTGKGIPNAIISVEGINH---------DIRTASDGDYWRLLNPGE 373 (405)
T ss_pred cCceEEEEC---------CCCCcCCCcEEEEecCcc---------ceeeCCCCceEEecCCce
Confidence 458999972 134599999999975443 12467777665 445653
No 53
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=33.32 E-value=2.4e+02 Score=22.27 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=28.7
Q ss_pred eEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCC-CCceEEEEEEEEcCCCceEEEEec
Q 031458 27 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDR-KSMQVVYSREGKTDSTGTYKILVS 86 (159)
Q Consensus 27 ~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~-~~~~v~~~~~~~TD~~G~F~i~l~ 86 (159)
+++|..+-|+.-..+ ..+--.+.|-.+-+.=... .+=+|++..+-+.-..|.|.|.+-
T Consensus 43 fi~EFsl~C~n~~~~--~~LyAeV~Gk~~PVar~~~~nkYQVSW~~e~k~a~sG~y~V~~f 101 (167)
T PF05404_consen 43 FIAEFSLKCSNGAKN--ISLYAEVNGKILPVARSGDTNKYQVSWTEEHKKASSGTYEVKFF 101 (167)
T ss_pred EEEEEEEEeCCCCcC--ccEEEEECCEEEEEEEcCCCCceEEEEEechhhccCCceEEEEe
Confidence 667777777641111 1222334444443333332 122456666666666677777664
No 54
>TIGR03361 VI_Rhs_Vgr type VI secretion system Vgr family protein. Members of this protein family belong to the Rhs element Vgr protein family (see TIGR01646), but furthermore all are found in genomes with type VI secretion loci. However, members of this protein family, although recognizably correlated to type VI secretion according the partial phylogenetic profiling algorithm, are often found far the type VI secretion locus.
Probab=32.59 E-value=1.1e+02 Score=27.44 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=33.9
Q ss_pred cCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecCC-----CcCcceEEEEccC
Q 031458 50 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSED-----HQDQLCDAVLVSS 101 (159)
Q Consensus 50 i~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~-----~~~~~C~v~LvsS 101 (159)
++|...++.....+ + +..||+.|.++|.++.+ .....|.+++...
T Consensus 358 i~G~q~A~V~g~~~-~------~i~~D~~GRvkV~f~wd~~~~~~~~~S~wvRvaqp 407 (513)
T TIGR03361 358 IDGPQTATVVGPAG-E------EIYTDEYGRVKVQFHWDRYGKRDEKSSCWVRVAQP 407 (513)
T ss_pred CCCCeEEEEECCCC-C------EEeECCCCCEEEEecccCCCCCCCCCceEEEeccc
Confidence 78888888886542 2 34699999999999853 2457899998653
No 55
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=32.39 E-value=44 Score=22.20 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEEcccCCCCCC--C---CCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecC
Q 031458 32 RVYCDTCQAGFE--T---PATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSE 87 (159)
Q Consensus 32 ~VyCd~C~~g~~--t---~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~ 87 (159)
..||..|.+... + ....-+|+..|.+.-. ....|.|.|.+++
T Consensus 3 IeyC~~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~--------------~~~~G~Fev~~~g 49 (72)
T TIGR02174 3 IEYCGSCGYKPRAAWLKQELLEEFPDLEIEGENT--------------PPTTGAFEVTVNG 49 (72)
T ss_pred EEECCCCCChHHHHHHHHHHHHHCCCCeeEEeee--------------cCCCcEEEEEECC
Confidence 369999985311 1 1224456655554433 3456999998854
No 56
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=32.26 E-value=1.4e+02 Score=23.23 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=16.0
Q ss_pred ceEEEEEEEEcC---CCceEEEEec
Q 031458 65 MQVVYSREGKTD---STGTYKILVS 86 (159)
Q Consensus 65 ~~v~~~~~~~TD---~~G~F~i~l~ 86 (159)
+..+|++++.|+ ++|.|-|++.
T Consensus 54 e~aTf~i~~ntg~tIs~Gk~VIeV~ 78 (153)
T KOG4680|consen 54 ENATFSISGNTGETISEGKYVIEVS 78 (153)
T ss_pred CccEEEEecccccEeeCCeEEEEEE
Confidence 456677776666 5799999886
No 57
>PF07245 Phlebovirus_G2: Phlebovirus glycoprotein G2; InterPro: IPR009878 This domain is found in several Phlebovirus glycoprotein G2 sequences. Members of the Bunyaviridae family acquire an envelope by budding through the lipid bilayer of the Golgi complex. The budding compartment is thought to be determined by the accumulation of the two heterodimeric membrane glycoproteins G1 and G2 in the Golgi [].
Probab=31.88 E-value=87 Score=28.92 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=38.7
Q ss_pred cCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEec-CCCcCcceEEEEccCC--CCCCCCCC
Q 031458 50 IAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVS-EDHQDQLCDAVLVSSP--QNDCKTVA 110 (159)
Q Consensus 50 i~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~-~~~~~~~C~v~LvsSP--~~~C~~~t 110 (159)
..||+|.|+|+..... ....++.++.+.+-++ .....+.|.....++| +..|.+-=
T Consensus 353 ~~GA~v~I~C~S~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~V~~~C~~sC 411 (507)
T PF07245_consen 353 EEGARVCIKCKSSKNT-----TIAAVCCDSSITIAFCCSPGTHDYCITLHFNSPQVDENCSYSC 411 (507)
T ss_pred cCCCeEEEEEEeCCCC-----eEEEEecCCcEEEEEecCCCCeeEEEEEEcCCcEEEEEEEEeC
Confidence 5799999999987432 2246888888887775 3455667887777777 35565433
No 58
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=31.13 E-value=1.7e+02 Score=19.70 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=24.9
Q ss_pred CeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEc
Q 031458 26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKT 75 (159)
Q Consensus 26 ~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~T 75 (159)
.+.++|.|- ..|+++..+|+|.|+ ..+..++.|.-
T Consensus 4 ~ie~~G~V~-------------e~L~~~~f~V~l~ng--~~vla~i~GKm 38 (68)
T TIGR00008 4 KIEMEGKVT-------------ESLPNAMFRVELENG--HEVLAHISGKI 38 (68)
T ss_pred EEEEEEEEE-------------EECCCCEEEEEECCC--CEEEEEecCcc
Confidence 477888886 589999999999986 23444444433
No 59
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=31.03 E-value=1.7e+02 Score=20.80 Aligned_cols=53 Identities=19% Similarity=0.302 Sum_probs=34.5
Q ss_pred CeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe-cCCCcCcceEEEEccCC
Q 031458 26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV-SEDHQDQLCDAVLVSSP 102 (159)
Q Consensus 26 ~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l-~~~~~~~~C~v~LvsSP 102 (159)
.+.++|.|- .-|+++..+|+|.|+ ..+..++.|.- =.++|.+ ++| .|.+.-||
T Consensus 6 ~ie~~G~V~-------------e~Lp~~~frV~LenG--~~vla~isGKm---R~~rIrIl~GD------~V~VE~sp 59 (87)
T PRK12442 6 LIELDGIVD-------------EVLPDSRFRVTLENG--VEVGAYASGRM---RKHRIRILAGD------RVTLELSP 59 (87)
T ss_pred eEEEEEEEE-------------EECCCCEEEEEeCCC--CEEEEEeccce---eeeeEEecCCC------EEEEEECc
Confidence 588999987 589999999999886 33443433332 2334543 555 46666665
No 60
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=30.58 E-value=1.6e+02 Score=19.86 Aligned_cols=68 Identities=16% Similarity=0.057 Sum_probs=45.6
Q ss_pred CCeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCCCCceEEEEEEE-EcCCCceEEEEec--CCCcCcceEEEEcc
Q 031458 25 KPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREG-KTDSTGTYKILVS--EDHQDQLCDAVLVS 100 (159)
Q Consensus 25 ~~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~-~TD~~G~F~i~l~--~~~~~~~C~v~Lvs 100 (159)
..+.+.+.+.=.. ....+..+..|.|+=.|. ++........ .+|++|.|..+++ .+.......+.+..
T Consensus 15 etV~~~~~~~~~~-------~~~~~~~~~~~~v~i~dp-~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 15 ETVHFRAIVRDLD-------NDFKPPANSPVTVTIKDP-SGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp SEEEEEEEEEEEC-------TTCSCESSEEEEEEEEET-TSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CEEEEEEEEeccc-------cccccccCCceEEEEECC-CCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4477777765221 014578888999999988 5777777777 8899999998764 44445666666644
No 61
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=27.88 E-value=49 Score=23.37 Aligned_cols=16 Identities=31% Similarity=0.354 Sum_probs=9.0
Q ss_pred EEEEEcCCCceEEEEe
Q 031458 70 SREGKTDSTGTYKILV 85 (159)
Q Consensus 70 ~~~~~TD~~G~F~i~l 85 (159)
.-...||++|.|.|+-
T Consensus 41 qYwt~td~~G~Fti~~ 56 (95)
T PF14686_consen 41 QYWTRTDSDGNFTIPN 56 (95)
T ss_dssp EEEEE--TTSEEE---
T ss_pred cEEEEeCCCCcEEeCC
Confidence 3467899999999973
No 62
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=2.2e+02 Score=19.58 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.8
Q ss_pred CeEEEEEEEcccCCCCCCCCCccccCCCEEEEEecCC
Q 031458 26 PFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDR 62 (159)
Q Consensus 26 ~~~V~G~VyCd~C~~g~~t~~~~pi~GA~V~v~C~~~ 62 (159)
...++|.|-. .|+|+.++|+|.|+
T Consensus 6 ~~e~~g~V~e-------------~L~~~~f~v~~edg 29 (75)
T COG0361 6 EIEMEGTVIE-------------MLPNGRFRVELENG 29 (75)
T ss_pred ccEEEEEEEE-------------ecCCCEEEEEecCC
Confidence 4678888874 89999999999997
No 63
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=25.96 E-value=2.4e+02 Score=19.76 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=22.9
Q ss_pred ccccCCCEEEEEec-CCCCceEE------EEEEEEcCCCceEEEEecC
Q 031458 47 TTYIAGAKVKVECK-DRKSMQVV------YSREGKTDSTGTYKILVSE 87 (159)
Q Consensus 47 ~~pi~GA~V~v~C~-~~~~~~v~------~~~~~~TD~~G~F~i~l~~ 87 (159)
..++.-..+.|+|. +. ..+. .+..+.+| +|.+.|.++.
T Consensus 11 ~i~~~~tS~~Vs~~~~g--s~ValS~dg~l~G~ai~~-sG~ati~l~~ 55 (81)
T PF03785_consen 11 SINLGQTSISVSCDVPG--SYVALSQDGDLYGKAIVN-SGNATINLTN 55 (81)
T ss_dssp EEETT-SEEEEEESSTT---EEEEEETTEEEEEEE-B-TTEEEEE-SS
T ss_pred cccccccEEEEEecCCC--cEEEEecCCEEEEEEEec-CceEEEECCc
Confidence 34555566666776 33 1222 36889999 9999999983
No 64
>smart00095 TR_THY Transthyretin.
Probab=25.71 E-value=1.7e+02 Score=21.81 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=25.7
Q ss_pred CCCccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEE
Q 031458 44 TPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKI 83 (159)
Q Consensus 44 t~~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i 83 (159)
+....|-.|..|+|.=.+.. +.-..-.++.||.+|...-
T Consensus 13 t~~G~PAagv~V~L~~~~~~-~~w~~la~~~Tn~DGR~~~ 51 (121)
T smart00095 13 AVRGSPAVNVAVKVFKKTEE-GTWEPFASGKTNESGEIHE 51 (121)
T ss_pred CCCCccCCCCEEEEEEeCCC-CceEEEEEEecCCCccccC
Confidence 34567999999999533311 2223347899999988753
No 65
>PHA02123 hypothetical protein
Probab=24.11 E-value=1.2e+02 Score=22.64 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=22.5
Q ss_pred EEEEcCCCceEEEEecC------CCcCcceEEEEccC
Q 031458 71 REGKTDSTGTYKILVSE------DHQDQLCDAVLVSS 101 (159)
Q Consensus 71 ~~~~TD~~G~F~i~l~~------~~~~~~C~v~LvsS 101 (159)
++..||++|.|.-.+.. ..+.+.|.--+..|
T Consensus 39 i~eftdeng~yesals~scd~~~~~~~d~clgiifns 75 (146)
T PHA02123 39 IQEFTDENGTYESALSASCDREVREQYDNCLGIVFNS 75 (146)
T ss_pred hhhhhcCCCcEeehhcccccHHHHhhcCceEEEEecC
Confidence 56789999999988763 12456788666655
No 66
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=22.94 E-value=40 Score=17.81 Aligned_cols=11 Identities=45% Similarity=1.250 Sum_probs=9.0
Q ss_pred EcccCCCCCCC
Q 031458 34 YCDTCQAGFET 44 (159)
Q Consensus 34 yCd~C~~g~~t 44 (159)
||+.|...+.+
T Consensus 3 ~C~~C~k~f~~ 13 (27)
T PF12171_consen 3 YCDACDKYFSS 13 (27)
T ss_dssp BBTTTTBBBSS
T ss_pred CcccCCCCcCC
Confidence 89999887765
No 67
>PF08884 Flagellin_D3: Flagellin D3 domain; InterPro: IPR014981 This domain is found in the central portion bacterial flagellin FliC, it contains a structural motif called a beta-folium fold []. Although no specific function is assigned its deletion leads to a reduction in filament stability []. ; PDB: 1IO1_A 1UCU_A 3A5X_A.
Probab=22.68 E-value=1.4e+02 Score=21.15 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=13.4
Q ss_pred ceEEEEEEEE--cCCCceEEEEecC
Q 031458 65 MQVVYSREGK--TDSTGTYKILVSE 87 (159)
Q Consensus 65 ~~v~~~~~~~--TD~~G~F~i~l~~ 87 (159)
++.-..+++. +.++|||.+.+..
T Consensus 37 gkYYv~V~g~~~~~knG~Yev~Vd~ 61 (90)
T PF08884_consen 37 GKYYVEVTGTTATAKNGYYEVTVDD 61 (90)
T ss_dssp --EEEEEEEET-SS--EEEEEEE-T
T ss_pred CCeEEEEEeeccCCCCccEEEEEec
Confidence 4444445566 8999999999976
No 68
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=22.62 E-value=2.5e+02 Score=18.80 Aligned_cols=53 Identities=23% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCeEEEEEEEcccCCCCCCCCCcccc-CCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEecCCCcCcceEEEE
Q 031458 25 KPFSVEGRVYCDTCQAGFETPATTYI-AGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVL 98 (159)
Q Consensus 25 ~~~~V~G~VyCd~C~~g~~t~~~~pi-~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l~~~~~~~~C~v~L 98 (159)
+.+.|+|.+- .+ .|.+|.|.-.+. +.. .......+ +|.|.+..+-++ -..+.|
T Consensus 11 ~~~~I~G~i~--------------~~~~~~~vyL~~~~~--~~~-~~ds~~v~-nG~F~f~~~~~~---p~~~~l 64 (106)
T PF14289_consen 11 KQFTIEGKIK--------------GLPDGDKVYLYYYDN--GKV-VIDSVVVK-NGKFSFKGPLDE---PGFYYL 64 (106)
T ss_pred CcEEEEEEEc--------------CCCCCCEEEEEEeCC--CCE-EEEEEEEe-CCEEEEEEeCCC---CEEEEE
Confidence 6799999986 45 789999988854 222 23445555 899999887543 255555
No 69
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=22.45 E-value=32 Score=20.17 Aligned_cols=14 Identities=43% Similarity=1.020 Sum_probs=11.2
Q ss_pred eEEEEEEEcccCCC
Q 031458 27 FSVEGRVYCDTCQA 40 (159)
Q Consensus 27 ~~V~G~VyCd~C~~ 40 (159)
..-.|.-||+.|.+
T Consensus 20 ~~~dG~~yC~~cG~ 33 (36)
T PF11781_consen 20 YSDDGFYYCDRCGH 33 (36)
T ss_pred EccCCEEEhhhCce
Confidence 45689999999954
No 70
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=22.08 E-value=70 Score=21.09 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=6.9
Q ss_pred ChhHHHHHHHH
Q 031458 1 MARTLLLIALC 11 (159)
Q Consensus 1 ma~~~~~~~l~ 11 (159)
|+|+++|..+.
T Consensus 9 mtriVLLISfi 19 (59)
T PF11119_consen 9 MTRIVLLISFI 19 (59)
T ss_pred HHHHHHHHHHH
Confidence 78877764433
No 71
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=21.89 E-value=1.8e+02 Score=21.93 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=26.6
Q ss_pred CccccCCCEEEEEecCCCCceEEEEEEEEcCCCceEEEEe
Q 031458 46 ATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILV 85 (159)
Q Consensus 46 ~~~pi~GA~V~v~C~~~~~~~v~~~~~~~TD~~G~F~i~l 85 (159)
..+|=+|.+|.|.=.+.+ ....-.+..||++|.-...+
T Consensus 20 ~GkPAagv~V~L~rl~~~--~~~~l~t~~Tn~DGR~d~pl 57 (124)
T COG2351 20 SGKPAAGVKVELYRLEGN--QWELLKTVVTNADGRIDAPL 57 (124)
T ss_pred cCCcCCCCEEEEEEecCC--cceeeeEEEecCCCcccccc
Confidence 357888888888766653 34445788999999766443
No 72
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=21.68 E-value=1.5e+02 Score=19.77 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.8
Q ss_pred ccCCCEEEEEecCC
Q 031458 49 YIAGAKVKVECKDR 62 (159)
Q Consensus 49 pi~GA~V~v~C~~~ 62 (159)
-|+|-+|.|+|-..
T Consensus 4 sisGTtVtlTCP~~ 17 (65)
T cd07692 4 SISGTTVTVTCPLS 17 (65)
T ss_pred EEeccEEEEECCCC
Confidence 48999999999854
No 73
>PRK15209 long polar fimbrial protein LpfA; Provisional
Probab=21.53 E-value=1.7e+02 Score=22.18 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=14.9
Q ss_pred CCCCeEEEEEEEcccCCC
Q 031458 23 NPKPFSVEGRVYCDTCQA 40 (159)
Q Consensus 23 ~~~~~~V~G~VyCd~C~~ 40 (159)
....+.+.|.|.=.+|.-
T Consensus 24 ~~g~I~f~G~I~~~tC~v 41 (174)
T PRK15209 24 GDGTVKFTGEIVDAPCVV 41 (174)
T ss_pred CCcEEEEEEEEEcCcceE
Confidence 345799999999889984
No 74
>PRK09733 putative fimbrial protein; Provisional
Probab=21.09 E-value=1.7e+02 Score=22.56 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCCeEEEEEEEcccCCC
Q 031458 24 PKPFSVEGRVYCDTCQA 40 (159)
Q Consensus 24 ~~~~~V~G~VyCd~C~~ 40 (159)
...+.+.|.|.=.+|.-
T Consensus 25 ~G~i~f~G~I~~~tC~i 41 (181)
T PRK09733 25 HGIVKFKGEVISAPCSI 41 (181)
T ss_pred CCEEEEEEEEEecceee
Confidence 45799999999999984
Done!