BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031459
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + P R+FKAFV D+ NL+PKIAPQA K +IL+GDGG GTIK F +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G + + K +ID++DK+N + YT+ EG+ EK Y+ K AS +GGSI K +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KG+ E+KEE +K +EKA+ L+ ++E +L +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + P R+FKAFV D+ NL+PKIAPQA K +IL GDGG GTIK F +
Sbjct: 1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G + + K +ID++DK+N + YT+ EG+ EK Y+ K AS +GGSI K +
Sbjct: 61 GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KG+ E+KEE +K +EKA+ L+ ++E +L +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E EA + + +R+FKAF+ D NL PK+APQA S++ ++G+GG GTIK +F +
Sbjct: 1 GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ NGGSI K+ +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 1 MGVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA 59
MGV +E E + + ++FKAFV D+ NL+PKIAPQA K +IL+GDGG GTIK F
Sbjct: 1 MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 60 DGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAE 119
+G + + K +I ++DK N T Y++ EG+ + EK Y+ K ++ +GG+I K ++
Sbjct: 61 EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 120 CHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+KEE +K +EKA L+ ++E +L +P Y
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + +R+FKAF+ D NL+PK+APQA S++ ++G+GG GTIK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ +GGSI K++ +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + +R+FKAF+ D NL PK+APQA S++ ++G+GG GTIK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ +GGSI K++ +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + +R+FKAF+ D NL PK+APQA S++ ++G+GG GTIK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ +GGSI K++ +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + +R+FKAF+ D NL PK+APQA S++ ++G+GG GTIK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ +GGSI K++ +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAY 158
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 127 bits (318), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 96/158 (60%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + +R+FKAF+ D NL PK+APQA S++ + G+GG GTIK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ +GGSI K++ +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E E + + +R+FKAF+ D L P++APQA S++ + G+GG GTIK +F +
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+G+GGSI K++ +
Sbjct: 61 GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KGD E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV +E EA + + +RMFKAF+ D L+PK+APQA S++ ++G+GG GTIK NF +
Sbjct: 1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G FK+ K R+D +D N Y+V EG EK ++K A+ +GG + K++ +
Sbjct: 61 GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
H KG+ E+K E +K ++E L VE++LLA+ D Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/160 (40%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MGVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA 59
M KE + +AP R+FKA V + H +L K P FKS +I++GDGGVGT+ F
Sbjct: 7 MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 60 DGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAE 119
DG + + D +D N KYT++EG+ EK VY+VK EA G GGS K+
Sbjct: 67 DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 120 CHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLYA 159
H K + EE +K E+KA Y VE +L ANP+++A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 1 MGVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA 59
MGV E ++V+ ++F+ FV D +LPK AP A+KS++I +GDGG GT+K+
Sbjct: 1 MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 60 DGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAE 119
DGG RID ++K+ LT Y+V +G+ E V + +GGSICK A
Sbjct: 60 DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 120 CHIKGDQELKEELMKDAEEKATALYNIVEAHLLAN 154
H KGD + EE +K A E+ TAL+ +EA+L+AN
Sbjct: 120 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 1 MGVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA 59
MGV F+ E + +AP++++KA V D+ ++PK A + +S++I++G+GG GTIK F
Sbjct: 1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPK-AVETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 60 DGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAE 119
+GG+ K+ +I+A+D+ NL Y++ G G EK ++ K NGGSI KV +
Sbjct: 60 EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 120 CHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156
KGD + EE K A+ + A + +E++L A+PD
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV FE E + VAP+ ++KA V D+ N++PK A +FKS++ ++G+GG GTIK F +
Sbjct: 1 GVFTFEDEINSPVAPATLYKALVTDADNVIPK-ALDSFKSVENVEGNGGPGTIKKITFLE 59
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G+ K +I+++D+ NL Y+V G EK +D K A NGGS K+ +
Sbjct: 60 DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156
KGD E ++ +K + KA AL+ +EA+LLA+PD
Sbjct: 120 ETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 105 bits (263), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV FE E+ + +AP+R++KA V D+ ++PK A +A +SI+ ++G+GG GTIK +
Sbjct: 1 GVFTFEDESTSTIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
GG+ K+ +I+A+D+ NL Y++ G G EK ++ K NGGSI KV +
Sbjct: 60 GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156
KGD + EE K A+ + A + +E +L A+P+
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 103 bits (257), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 3/156 (1%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
GV FE E P+AVA +++FKA DS +++PK+ Q +S++I++G+GG GT+K +
Sbjct: 1 GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
GG + +IDA+D+ + Y++ G G EK ++ K + +GGSI K+ +
Sbjct: 60 GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156
H KGD L + + ++A+ + T L+ VE ++LANP+
Sbjct: 120 HTKGDV-LSDAVREEAKARGTGLFKAVEGYVLANPN 154
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 84/157 (53%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG 61
GV F E ++VAP++++KA + + + +SI++++G+GGVGTIK +G
Sbjct: 1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKIDGPIQSIELVEGNGGVGTIKKITANEG 60
Query: 62 GDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECH 121
Q++DA+D+ NL Y++ G G EK ++ K A GGSI KV + H
Sbjct: 61 DKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFH 120
Query: 122 IKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158
KGD L + + DA K + +E ++LANP Y
Sbjct: 121 TKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157
>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1a From Yellow Lupine
Length = 155
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 2 GVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD 60
G+ FE E + VAP++++KA DS ++PK+ + +S++I++G+GG GTIK
Sbjct: 1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 61 GGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAEC 120
G ++DA+D+ NLT Y++ GEG EK Y+ K +GGSI K+ +
Sbjct: 60 DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 121 HIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156
H KGD L E + A+ K L+ +E ++LA+PD
Sbjct: 120 HTKGDV-LSETVRDQAKFKGLGLFKAIEGYVLAHPD 154
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 1 MGVIRFEKEAPAAVAPSRMFKAFVDSHNLL-PKIAPQAFKSIDILQGDGGVGTIKLWNFA 59
MGVI E E ++++ ++++ V+ N++ PK P+ + + L+GDGG GTIK F
Sbjct: 6 MGVITSESEYVSSLSAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDGGPGTIKKLTFV 65
Query: 60 DGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAA-AIFEKAVYDVKFEASGNGGSICKVAA 118
GDF +KQ ID +D++N Y+VYEG + EK V++ K + G I K
Sbjct: 66 --GDFGSTKQHIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTT 123
Query: 119 ECHIKGDQ-ELKEELMKDAEEKATALYNIVEAHLLANPD 156
+ + KGD EL ++ ++ E+ VE+ LLANPD
Sbjct: 124 KYYTKGDDIELSKDYLEAGIERFEGFTKAVESFLLANPD 162
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 1 MGVIRFEKEAPAAVAPSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA 59
MG E ++V+ ++F V D ++PK A A+KS+++ +GDGG GT+++
Sbjct: 1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 60 DGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAE 119
+G R DA++K+ L+ TV +G+ E + + +GGSI K A
Sbjct: 60 EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 120 CHIKGDQELKEELMKDAEEKATALYNIVEAHLLAN 154
H KGD + EE +K A+ + TAL+ +EA+L+AN
Sbjct: 120 FHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWNFADGGD 63
+ E + + + F + + K +P + D+ +GD G VG+I WN+ G+
Sbjct: 18 KLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGE 77
Query: 64 FKHSKQRIDALDKDNLTSKYTVYEGE 89
K +K+RI+A++ D + V EG+
Sbjct: 78 AKVAKERIEAVEPDKNLITFRVIEGD 103
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 25 DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84
D ++PK+ P K + +++GDGGVGTI ++NF + ++ I D+ +
Sbjct: 25 DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSPSYQREEITEFDESSHEIGLQ 84
Query: 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALY 144
V EG + + Y F+ S V + D +++E++ ++T +Y
Sbjct: 85 VIEGGYLSQGL--SYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMY 142
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 29 LLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG-GDFKHSKQRIDALDKDNLTSKYTVYE 87
++PK+ P K + +++GDGGVGT ++NF G + ++ I D+ + T V E
Sbjct: 29 VVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPGIAPVNYQREVITEYDELSHTIGLQVVE 88
Query: 88 G----EGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATAL 143
G +G + Y F+ S + V + + EL EE +K + + L
Sbjct: 89 GGYLNQGLSY------YKTTFQFSAISENKTLVNVKISYDHESELIEEKVKPTKTSESTL 142
Query: 144 Y 144
+
Sbjct: 143 F 143
>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VNE|B Chain B, The X-Ray Structure Of Norcoclaurine Synthase From
Thalictrum Flavum
pdb|2VQ5|A Chain A, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
pdb|2VQ5|B Chain B, X-Ray Structure Of Norcoclaurine Synthase From Thalictrum
Flavum In Complex With Dopamine And Hydroxybenzaldehyde
Length = 201
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 30 LPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHS-KQRIDALDKDNLTSKYTVYEG 88
LP + P AF+ ++I+ GDGGVGTI F G+F H K++ +D ++ K EG
Sbjct: 57 LPDLLPGAFEKLEII-GDGGVGTILDXTFVP-GEFPHEYKEKFILVDNEHRLKKVQXIEG 114
Query: 89 ---EGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIK 123
+ + ++ V +G + K + E H+K
Sbjct: 115 GYLDLGVTYYXDTIHVV---PTGKDSCVIKSSTEYHVK 149
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 32.7 bits (73), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G F S +R++ +D D+ + V GE + K+
Sbjct: 57 KRCRLISGDGDVGSVREVTVISGLPFSTSTERLEFVDDDHRVLSFRVVGGEHRLKNY-KS 115
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 116 VTSVNEFLNQDSGKVYTVVLESY 138
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G S +R++ +D D+ + V GE + K+
Sbjct: 68 KRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNY-KS 126
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 127 VTSVNEFLNQDSGKVYTVVLESY 149
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G S +R++ +D D+ + V GE + K+
Sbjct: 56 KRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNY-KS 114
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 115 VTSVNEFLNQDSGKVYTVVLESY 137
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G S +R++ +D D+ + V GE + K+
Sbjct: 57 KRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNY-KS 115
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 116 VTSVNEFLNQDSGKVYTVVLESY 138
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G S +R++ +D D+ + V GE + K+
Sbjct: 57 KRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNY-KS 115
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 116 VTSVNEFLNQDSGKVYTVVLESY 138
>pdb|1PNU|B Chain B, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome. This
File, 1pnu, Contains Only Molecules Of The 50s Ribosomal
Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site
Trna Are In The Pdb File 1pns.
pdb|1PNY|B Chain B, Crystal Structure Of The Wild Type Ribosome From E. Coli,
50s Subunit Of 70s Ribosome. This File, 1pny, Contains
Only Molecules Of The 50s Ribosomal Subunit. The 30s
Subunit Is In The Pdb File 1pnx.
pdb|1VOR|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|E Chain E, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 205
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 10 APAAVAPSRMFKAFV------DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGD 63
A A VAP+R+ + F DS N+ + + +G G G +K WNFA GG
Sbjct: 68 AKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFA-GGP 126
Query: 64 FKHSKQR 70
H ++
Sbjct: 127 ASHGSKK 133
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G S +R++ +D D+ + V GE + K+
Sbjct: 71 KRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEHRLKNY-KS 129
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 130 VTSVNEFLNQDSGKVYTVVLESY 152
>pdb|4G1T|A Chain A, Crystal Structure Of Interferon-Stimulated Gene 54
pdb|4G1T|B Chain B, Crystal Structure Of Interferon-Stimulated Gene 54
Length = 472
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 83 YTVYEGEGAAAIFE-KAVYDVKFEASGNGGSICKVAAEC-HIKGDQELKEELMKDAEE 138
+ + EGE + FE K Y +F+ ++C + A H+KG E E ++ AEE
Sbjct: 22 WNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79
>pdb|1NKW|B Chain B, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|B Chain B, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|B Chain B, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|B Chain B, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|B Chain B, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2OGM|B Chain B, The Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans Complexed With The Pleuromutilin
Derivative Sb-571519
pdb|2OGN|B Chain B, The Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans Complexed With The Pleuromutilin
Derivative Sb-280080
pdb|2OGO|B Chain B, The Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans Complexed With The Pleuromutilin
Derivative Retapamulin (Sb-275833)
pdb|2ZJP|B Chain B, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|B Chain B, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|B Chain B, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|B Chain B, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|B Chain B, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|B Chain B, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|B Chain B, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 211
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 10 APAAVAPSRMFKAFV------DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGD 63
A A VAP+R+ + F DS N+ + + +G G G +K WNFA GG
Sbjct: 68 AKAGVAPTRILREFRGFAPDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMKRWNFA-GGP 126
Query: 64 FKHSKQR 70
H ++
Sbjct: 127 ASHGSKK 133
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 39 KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKA 98
K ++ GDG VG+++ G S +R++ +D D+ + + GE + K+
Sbjct: 71 KRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRIVGGEHRLKNY-KS 129
Query: 99 VYDVKFEASGNGGSICKVAAECH 121
V V + + G + V E +
Sbjct: 130 VTSVNEFLNQDSGKVYTVVLESY 152
>pdb|2J01|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|E Chain E, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|C Chain C, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|E Chain E, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|E Chain E, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|C Chain C, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|E Chain E, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|E Chain E, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|E Chain E, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|E Chain E, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|E Chain E, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|E Chain E, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|E Chain E, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|E Chain E, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|E Chain E, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|E Chain E, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|E Chain E, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|E Chain E, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|E Chain E, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|E Chain E, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|E Chain E, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|E Chain E, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|E Chain E, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|E Chain E, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|3MRZ|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|2XG0|E Chain E, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|E Chain E, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|E Chain E, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|E Chain E, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|E Chain E, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|E Chain E, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|E Chain E, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|E Chain E, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|E Chain E, Ef-Tu Complex 3
pdb|2Y19|E Chain E, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|E Chain E, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|E Chain E, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|E Chain E, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|E Chain E, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|E Chain E, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|E Chain E, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|E Chain E, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|E Chain E, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|E Chain E, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|E Chain E, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|E Chain E, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|E Chain E, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 206
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 10 APAAVAPSRMFKAFVDSHNLLPKIAPQAFKS---IDIL---QGDGGVGTIKLWNFADGGD 63
A A V P R+ + D + + + FK +D+ +G G G +K WNFA G D
Sbjct: 68 AKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPD 127
Query: 64 FKHSKQRIDALDKD--NLTSKYTVYEGEGAAA 93
H +I N + VY+G+ A
Sbjct: 128 -SHGAHKIHRHPGSIGNRKTPGRVYKGKKMAG 158
>pdb|3PYO|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 204
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 10 APAAVAPSRMFKAFVDSHNLLPKIAPQAFKS---IDIL---QGDGGVGTIKLWNFADGGD 63
A A V P R+ + D + + + FK +D+ +G G G +K WNFA G D
Sbjct: 68 AKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPD 127
Query: 64 FKHSKQRIDALDKD--NLTSKYTVYEGEGAAA 93
H +I N + VY+G+ A
Sbjct: 128 -SHGAHKIHRHPGSIGNRKTPGRVYKGKKMAG 158
>pdb|3FIN|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit.
pdb|3TVE|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 205
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 10 APAAVAPSRMFKAFVDSHNLLPKIAPQAFKS---IDIL---QGDGGVGTIKLWNFADGGD 63
A A V P R+ + D + + + FK +D+ +G G G +K WNFA G D
Sbjct: 68 AKAGVEPVRILREIRDFNPEGDTVTVEIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPD 127
Query: 64 FKHSKQRIDALDKD--NLTSKYTVYEGEGAAA 93
H +I N + VY+G+ A
Sbjct: 128 -SHGAHKIHRHPGSIGNRKTPGRVYKGKKMAG 158
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 48 GGVGTIKLWNFADGGDFKHSKQRIDALDKDN 78
GG G +K+W+ + G+ K ++D L++DN
Sbjct: 69 GGKGCVKVWDISHPGN-KSPVSQLDCLNRDN 98
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 12/76 (15%)
Query: 64 FKHSKQRIDALDKDNLTS--KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECH 121
+ S++RI AL++ + KY+ Y+ AA I +AV + S K+A E
Sbjct: 172 LEESERRIRALEESGVYEGEKYSFYQ---AAKIVSEAVINYGLRYS-------KLAEELA 221
Query: 122 IKGDQELKEELMKDAE 137
D E +EEL+K AE
Sbjct: 222 ESEDGERREELLKIAE 237
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDI 43
F KE P ++ R F A ++ NLLPK P+ + + I
Sbjct: 183 FLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 220
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDI 43
F KE P ++ R F A ++ NLLPK P+ + + I
Sbjct: 152 FLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSI 189
>pdb|3M8N|A Chain A, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|B Chain B, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|C Chain C, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|D Chain D, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
Length = 225
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 120 CHIKGDQELKEELMKDAEEKATALYNIVEAHLLAN 154
C +KG ++L+ ++D E+ A + E HL N
Sbjct: 116 CLVKGGRDLQTHALEDWLERGYAALQVXENHLKTN 150
>pdb|2I3O|A Chain A, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|B Chain B, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|C Chain C, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
pdb|2I3O|D Chain D, Crystal Structure Of Gamma-Glutamyl Transferase Related
Protein From Thermoplasma Acidophilum
Length = 516
Score = 26.2 bits (56), Expect = 8.6, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 74 LDKDNLTSKYTVYEGEGAAAIFEKAVY-DVKFEASG 108
LDK T YT+YE GA + + +Y +V + SG
Sbjct: 439 LDKPRWTEPYTIYEAPGAVYVESEELYRNVSKQISG 474
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,986,634
Number of Sequences: 62578
Number of extensions: 209089
Number of successful extensions: 552
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 53
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)