Query 031459
Match_columns 159
No_of_seqs 102 out of 901
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 14:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 6.3E-43 1.4E-47 261.0 19.4 150 1-154 1-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 8E-37 1.7E-41 227.0 19.9 146 4-153 1-147 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 9.4E-19 2E-23 125.4 17.4 138 5-151 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.7 9.3E-16 2E-20 109.8 20.4 137 3-151 1-138 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.7 9.2E-16 2E-20 111.5 16.9 137 6-152 1-143 (144)
6 cd08861 OtcD1_ARO-CYC_like N-t 99.7 1.2E-14 2.6E-19 105.4 15.7 139 6-151 1-140 (142)
7 cd07819 SRPBCC_2 Ligand-bindin 99.7 4E-14 8.6E-19 101.7 18.1 136 4-150 2-139 (140)
8 cd07813 COQ10p_like Coenzyme Q 99.6 5.7E-14 1.2E-18 101.9 14.5 134 7-152 2-136 (138)
9 cd08865 SRPBCC_10 Ligand-bindi 99.6 1.4E-13 2.9E-18 98.3 16.3 136 6-151 1-138 (140)
10 cd07822 SRPBCC_4 Ligand-bindin 99.5 2.8E-12 6E-17 91.7 17.0 138 6-151 2-140 (141)
11 cd08862 SRPBCC_Smu440-like Lig 99.5 4.1E-12 8.9E-17 91.1 16.9 134 5-150 2-135 (138)
12 cd07812 SRPBCC START/RHO_alpha 99.5 4.6E-12 9.9E-17 88.3 15.9 136 7-150 2-140 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.5 6.4E-12 1.4E-16 93.1 16.9 136 5-149 2-140 (146)
14 PF03364 Polyketide_cyc: Polyk 99.4 1.1E-11 2.3E-16 88.7 15.7 127 12-148 1-130 (130)
15 cd05018 CoxG Carbon monoxide d 99.4 1.6E-11 3.5E-16 88.4 15.2 140 5-151 2-143 (144)
16 cd07825 SRPBCC_7 Ligand-bindin 99.4 1.1E-11 2.3E-16 90.0 13.5 138 6-151 2-143 (144)
17 cd07814 SRPBCC_CalC_Aha1-like 99.4 1.6E-11 3.4E-16 88.0 14.2 136 6-151 2-137 (139)
18 cd07818 SRPBCC_1 Ligand-bindin 99.4 4.4E-11 9.6E-16 87.4 15.8 138 5-151 3-148 (150)
19 PRK10724 hypothetical protein; 99.4 3.3E-11 7.2E-16 90.6 15.2 136 3-150 14-150 (158)
20 cd07817 SRPBCC_8 Ligand-bindin 99.4 2.6E-11 5.7E-16 87.0 14.1 107 5-124 1-107 (139)
21 cd07820 SRPBCC_3 Ligand-bindin 99.4 2.2E-11 4.8E-16 88.4 12.8 108 6-122 1-111 (137)
22 cd07824 SRPBCC_6 Ligand-bindin 99.3 2.8E-10 6.1E-15 83.5 16.5 107 6-123 3-112 (146)
23 cd07823 SRPBCC_5 Ligand-bindin 99.2 5.5E-10 1.2E-14 81.9 14.4 139 7-151 2-144 (146)
24 COG3427 Carbon monoxide dehydr 99.2 1E-09 2.2E-14 81.1 13.0 141 6-153 3-145 (146)
25 PF06240 COXG: Carbon monoxide 99.0 2.4E-08 5.3E-13 73.1 14.3 134 9-151 2-139 (140)
26 COG5637 Predicted integral mem 99.0 5.7E-09 1.2E-13 79.3 9.4 108 3-124 69-178 (217)
27 cd08898 SRPBCC_CalC_Aha1-like_ 98.9 7.8E-08 1.7E-12 69.5 12.2 139 5-153 2-145 (145)
28 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 1.4E-07 3.1E-12 70.1 12.9 129 4-155 11-139 (157)
29 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 2.8E-06 6.2E-11 61.9 16.2 137 6-152 2-142 (143)
30 cd08893 SRPBCC_CalC_Aha1-like_ 98.7 9.3E-07 2E-11 63.0 13.3 134 5-152 1-135 (136)
31 cd08876 START_1 Uncharacterize 98.7 8.2E-06 1.8E-10 62.3 18.1 144 4-151 41-194 (195)
32 cd08894 SRPBCC_CalC_Aha1-like_ 98.6 2E-06 4.3E-11 62.5 12.9 134 6-152 2-138 (139)
33 cd07826 SRPBCC_CalC_Aha1-like_ 98.6 3.8E-06 8.3E-11 61.4 14.3 138 6-152 2-141 (142)
34 cd08897 SRPBCC_CalC_Aha1-like_ 98.6 2.4E-06 5.3E-11 61.6 13.0 128 5-152 1-132 (133)
35 cd08895 SRPBCC_CalC_Aha1-like_ 98.6 9E-06 1.9E-10 59.5 16.1 136 5-152 1-145 (146)
36 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 1.6E-05 3.5E-10 58.1 17.2 134 6-152 2-145 (146)
37 PF08327 AHSA1: Activator of H 98.4 9.6E-06 2.1E-10 56.9 12.2 122 13-151 1-123 (124)
38 COG2867 Oligoketide cyclase/li 98.4 2.6E-06 5.6E-11 62.9 9.2 112 4-124 2-113 (146)
39 cd08891 SRPBCC_CalC Ligand-bin 98.4 3.5E-05 7.6E-10 56.5 14.4 137 6-152 2-148 (149)
40 COG3832 Uncharacterized conser 98.1 0.00023 5E-09 52.7 14.7 139 4-152 8-148 (149)
41 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00029 6.2E-09 50.4 13.8 122 6-151 2-124 (126)
42 cd08901 SRPBCC_CalC_Aha1-like_ 98.0 0.00019 4E-09 51.9 11.9 129 6-154 2-133 (136)
43 PTZ00220 Activator of HSP-90 A 97.8 0.0003 6.5E-09 51.0 10.0 123 12-151 1-126 (132)
44 cd08873 START_STARD14_15-like 97.5 0.019 4.1E-07 45.9 16.2 145 5-154 78-235 (235)
45 cd08874 START_STARD9-like C-te 97.4 0.02 4.3E-07 44.8 15.6 143 5-151 46-203 (205)
46 cd08906 START_STARD3-like Chol 97.0 0.1 2.3E-06 40.7 15.9 144 5-152 50-207 (209)
47 COG4276 Uncharacterized conser 97.0 0.053 1.1E-06 39.8 13.0 113 3-124 1-119 (153)
48 cd08877 START_2 Uncharacterize 97.0 0.079 1.7E-06 41.2 15.1 145 4-152 46-213 (215)
49 cd08905 START_STARD1-like Chol 97.0 0.072 1.6E-06 41.5 14.5 143 6-152 51-207 (209)
50 cd08863 SRPBCC_DUF1857 DUF1857 97.0 0.093 2E-06 38.8 15.0 111 16-148 19-132 (141)
51 cd08913 START_STARD14-like Lip 96.9 0.1 2.2E-06 41.9 15.3 144 5-154 82-240 (240)
52 cd00177 START Lipid-binding ST 96.8 0.13 2.9E-06 38.1 16.2 142 5-150 40-191 (193)
53 PF08982 DUF1857: Domain of un 96.7 0.066 1.4E-06 39.9 11.9 98 6-123 2-108 (149)
54 cd08903 START_STARD5-like Lipi 96.6 0.22 4.8E-06 38.7 16.3 143 6-152 48-206 (208)
55 PF10698 DUF2505: Protein of u 96.6 0.12 2.7E-06 38.4 12.7 108 6-122 1-127 (159)
56 cd08868 START_STARD1_3_like Ch 96.1 0.44 9.5E-06 36.8 15.2 143 6-152 50-206 (208)
57 cd08871 START_STARD10-like Lip 96.0 0.51 1.1E-05 36.8 16.0 146 6-155 49-204 (222)
58 cd08914 START_STARD15-like Lip 95.7 0.86 1.9E-05 36.5 14.5 114 5-122 79-205 (236)
59 cd08870 START_STARD2_7-like Li 95.5 0.84 1.8E-05 35.4 17.5 144 5-152 51-207 (209)
60 cd08911 START_STARD7-like Lipi 94.4 1.8 3.9E-05 33.5 17.9 145 5-153 46-206 (207)
61 cd08867 START_STARD4_5_6-like 94.0 2.2 4.8E-05 32.8 15.9 142 6-151 48-205 (206)
62 cd08872 START_STARD11-like Cer 93.5 3.1 6.7E-05 33.1 14.6 144 5-154 53-227 (235)
63 smart00234 START in StAR and p 93.4 2.6 5.7E-05 31.9 17.6 145 5-153 46-202 (206)
64 cd08869 START_RhoGAP C-termina 90.6 6.4 0.00014 30.2 16.0 117 6-126 46-171 (197)
65 cd08910 START_STARD2-like Lipi 90.6 6.7 0.00014 30.4 14.4 141 5-152 50-205 (207)
66 cd08908 START_STARD12-like C-t 86.6 14 0.00029 28.9 12.4 119 4-126 52-178 (204)
67 KOG3177 Oligoketide cyclase/li 83.9 5.6 0.00012 31.4 6.7 104 9-123 73-181 (227)
68 PF01852 START: START domain; 69.7 44 0.00096 25.0 18.3 146 4-155 46-204 (206)
69 PF11485 DUF3211: Protein of u 62.6 59 0.0013 23.9 10.7 41 5-47 2-42 (136)
70 PRK06628 lipid A biosynthesis 56.7 21 0.00045 29.0 4.5 43 116-158 239-281 (290)
71 PRK06553 lipid A biosynthesis 53.2 22 0.00047 29.1 4.1 44 115-158 257-300 (308)
72 cd08904 START_STARD6-like Lipi 47.6 1.3E+02 0.0029 23.3 15.7 139 6-149 48-201 (204)
73 PF02021 UPF0102: Uncharacteri 46.8 70 0.0015 21.5 5.2 66 82-155 14-79 (93)
74 PRK05645 lipid A biosynthesis 45.3 37 0.00081 27.5 4.3 40 115-158 238-277 (295)
75 TIGR02208 lipid_A_msbB lipid A 44.9 38 0.00082 27.6 4.3 39 116-158 249-287 (305)
76 cd00222 CollagenBindB Collagen 44.5 39 0.00086 26.0 4.0 73 12-91 3-75 (187)
77 PRK08419 lipid A biosynthesis 41.6 55 0.0012 26.5 4.7 24 135-158 258-281 (298)
78 cd08902 START_STARD4-like Lipi 39.8 1.8E+02 0.004 22.7 14.3 141 6-151 49-201 (202)
79 PRK14681 hypothetical protein; 39.5 1E+02 0.0023 23.1 5.5 69 81-156 60-128 (158)
80 PF13410 GST_C_2: Glutathione 37.4 70 0.0015 19.3 3.8 24 132-155 3-26 (69)
81 PRK06860 lipid A biosynthesis 37.4 57 0.0012 26.6 4.2 40 115-158 251-290 (309)
82 PRK08734 lipid A biosynthesis 37.3 56 0.0012 26.7 4.2 22 137-158 257-278 (305)
83 PRK08733 lipid A biosynthesis 36.8 61 0.0013 26.5 4.3 40 115-158 248-287 (306)
84 PRK08706 lipid A biosynthesis 34.7 61 0.0013 26.1 3.9 39 116-158 233-271 (289)
85 TIGR02207 lipid_A_htrB lipid A 33.5 73 0.0016 25.9 4.2 39 116-158 246-284 (303)
86 PRK08943 lipid A biosynthesis 33.3 73 0.0016 26.1 4.2 40 115-158 257-296 (314)
87 PF03000 NPH3: NPH3 family; I 31.8 32 0.0007 27.9 1.8 17 141-157 220-236 (258)
88 PF03279 Lip_A_acyltrans: Bact 31.8 93 0.002 24.9 4.6 41 114-158 246-286 (295)
89 PRK14680 hypothetical protein; 31.5 1.6E+02 0.0034 21.4 5.2 67 82-156 24-90 (134)
90 PRK14688 hypothetical protein; 30.6 1.5E+02 0.0033 21.1 5.0 66 82-155 24-89 (121)
91 PRK05646 lipid A biosynthesis 29.1 88 0.0019 25.5 4.0 39 116-158 250-288 (310)
92 cd07984 LPLAT_LABLAT-like Lyso 28.7 1.1E+02 0.0024 22.4 4.3 23 136-158 162-184 (192)
93 TIGR02777 LigD_PE_dom DNA liga 28.2 1E+02 0.0022 23.2 3.8 60 51-124 50-110 (156)
94 PRK07920 lipid A biosynthesis 28.1 83 0.0018 25.5 3.7 39 116-158 236-274 (298)
95 PRK12497 hypothetical protein; 26.6 2.2E+02 0.0048 20.0 5.2 67 82-156 24-90 (119)
96 KOG2936 Uncharacterized conser 25.2 2.3E+02 0.005 23.6 5.7 95 5-119 174-271 (301)
97 PRK14684 hypothetical protein; 24.8 2.5E+02 0.0053 19.9 5.2 67 82-156 24-90 (120)
98 PRK06946 lipid A biosynthesis 23.3 1.4E+02 0.0031 24.1 4.2 21 138-158 255-275 (293)
99 PRK14686 hypothetical protein; 22.8 2.7E+02 0.0059 19.6 5.1 66 82-155 23-88 (119)
100 PF00028 Cadherin: Cadherin do 22.4 2.2E+02 0.0048 18.1 5.0 12 78-89 28-39 (93)
101 PF08473 VGCC_alpha2: Neuronal 22.3 2.1E+02 0.0045 19.7 4.1 21 67-89 34-54 (94)
102 PF11647 PMT_C: C-terminal reg 21.6 1.2E+02 0.0026 19.4 2.8 19 139-157 43-61 (66)
103 cd08909 START_STARD13-like C-t 20.8 4.1E+02 0.0089 20.7 12.9 117 4-125 52-178 (205)
104 PF07067 DUF1340: Protein of u 20.1 1.3E+02 0.0029 23.5 3.2 27 129-155 66-93 (236)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=6.3e-43 Score=261.02 Aligned_cols=150 Identities=37% Similarity=0.631 Sum_probs=137.1
Q ss_pred CccEEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcc-cEEEEEeecCCceeeeEEEEEEeecCCC
Q 031459 1 MGVIRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVG-TIKLWNFADGGDFKHSKQRIDALDKDNL 79 (159)
Q Consensus 1 m~~~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G-~vR~~~~~~g~~~~~~kErl~~~D~~~~ 79 (159)
|++++++.|+++++||+++|+++++.++++|+++|++|++++++||||++| |||.|+|.+|++..++|||++.+|++++
T Consensus 1 m~~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~ 80 (151)
T PF00407_consen 1 MGVGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENK 80 (151)
T ss_dssp SCEEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTT
T ss_pred CCcEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCc
Confidence 899999999999999999999999877889999999999999999998777 9999999999998999999999999999
Q ss_pred eEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhC
Q 031459 80 TSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLAN 154 (159)
Q Consensus 80 ~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 154 (159)
+++|+++||+++. .|++|..+++++|.++|+|+++|+++|++.+++.++|+. ..+++..|+|+||+||++|
T Consensus 81 ~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~---~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 81 TITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEK---YLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHH---HHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHH---HHHHHHHHHHHHHHHHhcC
Confidence 9999999999886 799999999999999999999999999999886643332 2357999999999999998
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=8e-37 Score=227.00 Aligned_cols=146 Identities=37% Similarity=0.570 Sum_probs=127.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCC-ccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEE
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHN-LLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~-~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
++++.+++|+||||+||++++||.+ +.+.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|+++
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~~ 79 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTYK 79 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEEE
Confidence 4789999999999999999999994 3455666 7999999999999999999999988777899999999999999999
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhh
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLA 153 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 153 (159)
|++++|+++..+|++|+++++|.|.++++|+++|+++|++.+++.++|+.. ++.+..+++++++|++.
T Consensus 80 y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~ 147 (148)
T cd07816 80 YTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEI---KAGKEKALKMFKAVEAY 147 (148)
T ss_pred EEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHH---HhHHHHHHHHHHHHHhc
Confidence 999999987446999999999999988899999999999998764444432 35788889999998875
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.83 E-value=9.4e-19 Score=125.45 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=115.2
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
.++.+++|++|+++||+++.|+++ +++|+|. +++++++++..++|+++.+.+..| ..+++++..+|+.+++++|+
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~ 76 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDG---GTVRERLLALDDAERRYSYR 76 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCC---CEEEEEehhcCccCCEEEEE
Confidence 478899999999999999999999 8999997 889998766545799999998865 37889999999988899999
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHL 151 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 151 (159)
+.+|+. ++.++.++++|.|.++|+|.++|+.+|++.+. .+.+.....+.+.....++.|+++|
T Consensus 77 ~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 77 IVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred ecCCCC---CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 988743 47788999999998887899999999998755 3333334466777888899998876
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.75 E-value=9.3e-16 Score=109.83 Aligned_cols=137 Identities=18% Similarity=0.263 Sum_probs=99.4
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEE
Q 031459 3 VIRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
|.+++.++.|++||++||+++.|+.+ +++|+|+ +.++++++++ ++|..+.+.... + ..+++++..+|++.+.+.
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g--~-~~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAG--R-GTVREEITEYDPEPRRIT 74 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECS--C-SEEEEEEEEEETTTTEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhh-hhhhhhc-eEEEEEcccc-ccceeEEEEecc--c-cceeEEEEEecCCCcEEE
Confidence 56899999999999999999999999 9999996 8899977633 445556666432 2 379999999998899999
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
|++. . .++.++.++++|.|.++| |.++|+.+|++..........+. .+...+...++.|.++|
T Consensus 75 ~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 75 WRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 9996 1 257788999999999865 99999999998211222222222 23333455555555443
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.72 E-value=9.2e-16 Score=111.54 Aligned_cols=137 Identities=12% Similarity=0.143 Sum_probs=100.0
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecC---Cc-eeeeEEEEEEeecCCCeE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG---GD-FKHSKQRIDALDKDNLTS 81 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g---~~-~~~~kErl~~~D~~~~~~ 81 (159)
|+.++.|++|+++||+++.|+++ +|+|+|+ +++++++++.+. +.........+ .. ...+..++.+.++..+++
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~-~~~w~p~-v~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i 77 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDN-LAEFIPN-LAESRLLERNGN-RVVLEQTGKQGILFFKFEARVVLELREREEFPREL 77 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhh-HHhhCcC-ceEEEEEEcCCC-EEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceE
Confidence 46789999999999999999999 9999997 889998876531 21111110000 00 124455666667668999
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCC-CcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhhh
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGN-GGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHLL 152 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~-g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~ 152 (159)
.|++++|+ +..|.++++|.|.++ |+|.++|+++|++... .|...++ .+++.+..++++|.+.+-
T Consensus 78 ~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~--~p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 78 DFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF--APVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998774 668999999999988 6899999999998653 3334444 556667888888887653
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.65 E-value=1.2e-14 Score=105.43 Aligned_cols=139 Identities=17% Similarity=0.280 Sum_probs=96.8
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
++.++.|++|+++||+++.|+.+ +|+|+|. .+++.++++++...++.+....++..... +....+|++.+++.|..
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~~ 76 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFRQ 76 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEEE
Confidence 46889999999999999999999 9999996 35554554322224665666533322223 34445788888999998
Q ss_pred EecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
.++.. .+..+.++++|.|.++++|.|+|+.+|++....+.+...+. .+...+..++++|-+++
T Consensus 77 ~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 77 EEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred eeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHh
Confidence 87543 37789999999999878899999999998754443333333 33333556666665543
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.65 E-value=4e-14 Score=101.74 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=94.6
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC-CCcccEEEEEeecCCceeeeEEEEEEeecCCCeEE
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
.+++.++.|++|+++||+++.|+++ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .++++
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~ 77 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSVS 77 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcEE
Confidence 3688999999999999999999999 9999997 8899986653 3333344455543321111222332 233 67899
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHh
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAH 150 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~ 150 (159)
|+..+|. +..++.++++|.|.++ +|.++|+.++++.. +.+.-.++ ..+.....++++|.+|
T Consensus 78 ~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 78 WTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVELTV--PLPGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred EEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEecC--CCCHHHHHHhhhHHHHHHHHhHhhh
Confidence 9998875 4678899999999876 79999999999854 34434333 2233346666666655
No 8
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.60 E-value=5.7e-14 Score=101.86 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=100.9
Q ss_pred EEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEE
Q 031459 7 EKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVY 86 (159)
Q Consensus 7 ~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~ 86 (159)
+.++.|++|+++||+++.|+++ +|+|+|+ +.+++++++++. +....+....++....+..++. +++ .++++++..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~-~~~~~p~-~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVER-YPEFLPW-CTASRVLERDED-ELEAELTVGFGGIRESFTSRVT-LVP-PESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHh-hhhhcCC-ccccEEEEcCCC-EEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEEec
Confidence 6789999999999999999999 9999997 889999987652 3444455554432234555655 666 668899988
Q ss_pred ecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhhh
Q 031459 87 EGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHLL 152 (159)
Q Consensus 87 eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~ 152 (159)
+|. ++.+.++++|.|.++|+|.|+|..+|++.+. .+...++ -+.+....+++++++.+.
T Consensus 77 ~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~--l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 77 DGP-----FKHLEGEWRFKPLGENACKVEFDLEFEFKSR--LLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred CCC-----hhhceeEEEEEECCCCCEEEEEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 883 6688999999999988999999999999743 2223333 445566788888877654
No 9
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.4e-13 Score=98.33 Aligned_cols=136 Identities=21% Similarity=0.190 Sum_probs=97.2
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC-CCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
++.++.|++|+++||+++.|+.+ +++|.|. +.+++.+.+. .++|+...+....++....++++++.+|+ ++.+.|.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~~ 77 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVFR 77 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEEE
Confidence 35789999999999999999999 9999997 6788876543 36788888876544332367899998775 5789998
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
...|. + .+..+++|.+.++ +|.++|+.+|+...-.......++ .++..+..++++|.+++
T Consensus 78 ~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 78 GSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred ecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 86553 2 3688999999765 699999999997321111112222 34444566666666654
No 10
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=2.8e-12 Score=91.74 Aligned_cols=138 Identities=14% Similarity=0.103 Sum_probs=94.3
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecC-CceeeeEEEEEEeecCCCeEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG-GDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g-~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
++.++.|++|+++||+++.|+.+ +|+|+|. +..++... .++|+...+.+..+ +......+++.++|+. +++.|+
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~~ 76 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAWR 76 (141)
T ss_pred eEEEEEecCCHHHHHHHHhcccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEEE
Confidence 67899999999999999999999 9999986 55655321 35677777776543 2334678888888875 588999
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHL 151 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 151 (159)
...++.. .-....++.|.|.++++|.++|+..|...............+.+....+++.|.+++
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 77 GGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred ecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 8666532 235668999999877789999998886432211111111134444555666665553
No 11
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.50 E-value=4.1e-12 Score=91.09 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=90.8
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|+||+++||+++.|+.+ +|+|+|+ +.+++...+..++|+...++...+ ..+..++.++++.+ +++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i~~~~p~~-~~~~~ 75 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGL---VRSTFTVTELRPGH-SFTWT 75 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCC---CceEEEEEEecCCC-EEEEE
Confidence 578899999999999999999999 9999997 789987654325677666654432 25677888888654 68887
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHh
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAH 150 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~ 150 (159)
.... ...+..+++|.+.++++|.++|+.+|.........+.....+...+...+++|.+.
T Consensus 76 ~~~~------~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 135 (138)
T cd08862 76 GPAP------GISAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAA 135 (138)
T ss_pred ecCC------CEEEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5332 23456799999987678999999888742111011112223444455555555443
No 12
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.49 E-value=4.6e-12 Score=88.26 Aligned_cols=136 Identities=19% Similarity=0.326 Sum_probs=98.2
Q ss_pred EEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC-CCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 7 EKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 7 ~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
+.++.|++|+++||+.+.|+.+ +++|+|+ +.+++..++. ...|....+.+..+. ....+.++..+++ +..++|+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~-~~~~~~~~ 77 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGGR-RLTLTSEVTEVDP-PRPGRFRV 77 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCCc-cccceEEEEEecC-CCceEEEE
Confidence 5789999999999999999999 9999997 7888877654 355666666654222 2357788887777 66899998
Q ss_pred EecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCC--CChHHHHHHHHHHHHHHHHHHHh
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQE--LKEELMKDAEEKATALYNIVEAH 150 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~--~~~~~~~~~~~~~~~~~k~ie~~ 150 (159)
..++.. ..+..++++.+.++++|.++|+.++.+..... ..+...+.+++.+..+++.+++.
T Consensus 78 ~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 78 TGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred ecCCCC----cceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 877642 57889999999876689999999999865431 22222334444455666665543
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.48 E-value=6.4e-12 Score=93.14 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=91.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEe-ecCCceeeeEEEEEEeecCCCeEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNF-ADGGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~-~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
..+.++.|++||++||+++.|+.+ +|.|+|. +.++++++.++ +.|.--++.+ ..|....+..|+. .|+..+++.
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~--~~~~~~~i~ 77 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERT--LDPVNRTVR 77 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEE--ecCCCcEEE
Confidence 467899999999999999999999 9999997 88999887543 4442211222 2333333444543 688999888
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEA 149 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~ 149 (159)
++-.... ++.+..++++|+|.++| |.|++..+|+..++.+.....+. .+.......+++|-+
T Consensus 78 ~~~~~~~----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~ 140 (146)
T cd08860 78 ARRVETG----PFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKK 140 (146)
T ss_pred EEEecCC----CcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHH
Confidence 7521111 48899999999999664 99999999997755444333333 222224444444443
No 14
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.45 E-value=1.1e-11 Score=88.67 Aligned_cols=127 Identities=20% Similarity=0.360 Sum_probs=88.7
Q ss_pred ecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEEecCCC
Q 031459 12 AAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGA 91 (159)
Q Consensus 12 i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~ 91 (159)
|++|+++||+++.|+.+ +|.|+|. ++++++++.++. +..-.+....++....+..++.. ++... +.+...+|+
T Consensus 1 V~ap~~~V~~~i~D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~-- 73 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP-- 73 (130)
T ss_dssp ESS-HHHHHHHHTTGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT--
T ss_pred CCCCHHHHHHHHHHHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC--
Confidence 78999999999999999 9999996 889999987643 33334555544332355666653 44444 888887774
Q ss_pred ccceeEEEEEEEEeecCC--CcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 031459 92 AAIFEKAVYDVKFEASGN--GGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVE 148 (159)
Q Consensus 92 ~~~~~~y~~t~~v~~~~~--g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie 148 (159)
++.+.+++++.+.++ |+|.++++.+|+..+..+.+..... .+.+....++++|+
T Consensus 74 ---~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 74 ---FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp ---EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 889999999999875 3677788888887655555555443 33444556666553
No 15
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.42 E-value=1.6e-11 Score=88.43 Aligned_cols=140 Identities=17% Similarity=0.242 Sum_probs=89.5
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|++|+++||+++.|+.+ +++|+|+ +++++.+++++ ......+.+.+-+..-..+-++..+|+. +++.++
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 77 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTIT 77 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEEE
Confidence 478899999999999999999999 9999997 77887665321 1111112221111111224555555544 567777
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCC-CCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGD-QELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
....+.. ....+..++++.|. +++|.++|+.+|++.+. ...+...++ .+.+.+..+++.|.+++
T Consensus 78 ~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 78 GEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6443322 35689999999998 67899999999998653 222334343 34444556666665543
No 16
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=1.1e-11 Score=90.02 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=92.8
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC--CCcccEEEEEeec-CCceeeeEEEEEEeecCCCeEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD--GGVGTIKLWNFAD-GGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~--g~~G~vR~~~~~~-g~~~~~~kErl~~~D~~~~~~~ 82 (159)
++.++.|+||+++||+++.|+.+ +|+|.|... ......++ -.+|+...+.... |++ ..+..++..+++.+ +++
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~~-~~~W~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~g~~-~~~~~~v~~~~p~~-~l~ 77 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPRR-HPEIDGSGT-VREAIDGPRILAVGDVFRMAMRLDGGP-YRITNHVVAFEENR-LIA 77 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCccc-cceeCCCCc-cccccCCCccCCCCCEEEEEEEcCCCc-eEEEEEEEEECCCC-EEE
Confidence 67899999999999999999999 999998522 22222333 2678888777664 343 35666788777755 689
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCC-CCChHHHHHHHHHHHHHHHHHHHhh
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQ-ELKEELMKDAEEKATALYNIVEAHL 151 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~-~~~~~~~~~~~~~~~~~~k~ie~~l 151 (159)
|+..-.+. +......+++|++.++|+|+++++.+|...+.. ... .............+..|++||
T Consensus 78 ~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~-~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 78 WRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELL-GFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccCChhhhhcc-ccCCCCHHHHHHHHHHHHHHh
Confidence 98631111 123456788999988788999999988865331 111 101113456778888888876
No 17
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.41 E-value=1.6e-11 Score=88.03 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=94.3
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
++.++.|+||+++||+++.|+.+ +|+|+|+ +..++.....| |+.+.+....++....+..++..+|+. +.+.|+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~~ 76 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFTW 76 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEEe
Confidence 57889999999999999999999 9999995 32333211223 666655444333334678888988866 6899998
Q ss_pred EecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhh
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l 151 (159)
..++.. +.-....+++|.|.+ ++|.++|+.++.+.... .......+......++..|.++|
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 77 AFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFPEEDA--EQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred cccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccChHhH--HHHHHhCHhhHHHHHHHHHHHHh
Confidence 776531 234568899999987 57999999998874211 12233345556677777777765
No 18
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=4.4e-11 Score=87.43 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=90.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceee---EEEE--cCCCCcccEEEEEeecCCceeeeEEEEEEeecCCC
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKS---IDIL--QGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNL 79 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s---~~~~--eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~ 79 (159)
+++.++.|++|+++||+++.|+.+ +|+|+|. ... ++.. .++.++|+...++...+. .....++..+++ ++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-~~ 77 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-NE 77 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-Cc
Confidence 678999999999999999999999 9999995 332 2221 223467888777665421 133456666664 56
Q ss_pred eEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCC--CC-hHHHHHHHHHHHHHHHHHHHhh
Q 031459 80 TSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQE--LK-EELMKDAEEKATALYNIVEAHL 151 (159)
Q Consensus 80 ~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~--~~-~~~~~~~~~~~~~~~k~ie~~l 151 (159)
++.|++..++.. + -.+..+++|.|. ++||.++|+.+|+...... .. .-....+++.+...+++|.+++
T Consensus 78 ~i~~~~~~~~~~--~-~~~~~~~~~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 78 RIEYELRFIKPF--E-ATNDVEFTLEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred EEEEEEEecCCc--c-ccceEEEEEEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 799998764422 1 267899999999 4579999999999643211 00 1111233344555556655554
No 19
>PRK10724 hypothetical protein; Provisional
Probab=99.38 E-value=3.3e-11 Score=90.56 Aligned_cols=136 Identities=15% Similarity=0.209 Sum_probs=99.4
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEE
Q 031459 3 VIRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
|.+++.++.|++|++++|+++.|.++ +|+|+|. .+++++++-++. +.+..++.+-++-...+..|.. +++.+ ++.
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~ 88 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL 88 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence 45788999999999999999999999 9999996 778888775432 2344455543433346666665 45544 899
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHh
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAH 150 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~ 150 (159)
+.+++|+ ++++.+.|+|.|.++++|.|++..+|+... +.....++ -..+.+..|.+++++-
T Consensus 89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s--~l~~~~~~~~~~~~~~~mv~AF~~R 150 (158)
T PRK10724 89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEFTN--KLIELAFGRVFKELASNMVQAFTVR 150 (158)
T ss_pred EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEEch--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999883 788999999999887789999999999753 22222223 3344556777777764
No 20
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=2.6e-11 Score=86.96 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=79.0
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|++|+++||+++.|+.+ +|+|.|+ +++++++.|. +....+....|.. ..+..++...++ ++.+.|.
T Consensus 1 ~v~~~i~I~ap~e~V~~~~~D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~v~~~~~-~~~i~~~ 73 (139)
T cd07817 1 TVEKSITVNVPVEEVYDFWRDFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPAGLS-VEWDAEITEQVP-NERIAWR 73 (139)
T ss_pred CeeEEEEeCCCHHHHHHHHhChhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCCCCc-EEEEEEEeccCC-CCEEEEE
Confidence 367899999999999999999999 9999997 8899876442 2222233332333 355666665444 5569998
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcC
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKG 124 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~ 124 (159)
...|. + .+.+++.|.+.++++|.+++++.|++..
T Consensus 74 ~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 74 SVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred ECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEECCc
Confidence 76653 3 5678999999877789999999999764
No 21
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=2.2e-11 Score=88.44 Aligned_cols=108 Identities=17% Similarity=0.226 Sum_probs=85.1
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC-C--CcccEEEEEeecCCceeeeEEEEEEeecCCCeEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-G--GVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~-g--~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~ 82 (159)
++.++.|++|+++||+.+.|+.+ +|+|+|+ +.++++++.+ | .+|+.-.+.+..++..-.++-+++.+++ ++.++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f~ 77 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRFV 77 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeEE
Confidence 46789999999999999999999 9999997 7789987433 2 5578888888765422345666676554 55788
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEE
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHI 122 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~ 122 (159)
++...|. +.++..++.|.|.++ ||.++++++|+.
T Consensus 78 ~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~ 111 (137)
T cd07820 78 DEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL 111 (137)
T ss_pred EEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence 9887764 567888999998876 699999999997
No 22
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=2.8e-10 Score=83.47 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=77.5
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEc--CCCCcccEEEEEeecC-CceeeeEEEEEEeecCCCeEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQ--GDGGVGTIKLWNFADG-GDFKHSKQRIDALDKDNLTSK 82 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~e--G~g~~G~vR~~~~~~g-~~~~~~kErl~~~D~~~~~~~ 82 (159)
++.+..|++|+++||+++.|+.+ +|+|+|+ +.++++++ ++.++|+.-++..... +....+.-++.+. +..+.++
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~~ 79 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLLE 79 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEEE
Confidence 56788999999999999999999 9999996 88998887 2336676655443322 2112445555554 4566888
Q ss_pred EEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEc
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIK 123 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~ 123 (159)
|+. +|+. . ...+++|.|.++ ||.|+++.+++..
T Consensus 80 ~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~~ 112 (146)
T cd07824 80 VRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRTT 112 (146)
T ss_pred EEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEcC
Confidence 885 5642 2 268899999754 6999999999974
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.24 E-value=5.5e-10 Score=81.89 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=84.0
Q ss_pred EEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeee--EEEEEEeecCCCeEEEE
Q 031459 7 EKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHS--KQRIDALDKDNLTSKYT 84 (159)
Q Consensus 7 ~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~--kErl~~~D~~~~~~~y~ 84 (159)
+.++.|++|+++||+++.|+.+ ++.|+|+ +++++.+ |++. ..-.+++..|+-...+ +=++..++++.++++++
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVLE 76 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEE
Confidence 5688999999999999999999 9999997 7787754 3221 1122333322210112 22455556578888877
Q ss_pred EEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCC-CCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 85 VYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGD-QELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 85 i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
.-..+.....--....++++.| .+++|.++|+.+++..+. ..+....++ ..++.+..++++|.+.+
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~-~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSP-AGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEe-cCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 5432111101224677888888 456899999999987543 222222233 33444566666665543
No 24
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=99.18 E-value=1e-09 Score=81.11 Aligned_cols=141 Identities=18% Similarity=0.287 Sum_probs=99.7
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
++-+..|++|+++||+.+.|+.. +...+|+ ++|++. +|+.-.+.+ .+.+++=..--..+=++..+|+..++++.+.
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe~-~a~ciPG-~qs~e~-~g~e~~~~v-~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g 78 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPEQ-VAACIPG-VQSVET-NGDEYTAKV-KLKIGPLKGTFSGRVRFVNVDEPPRSITING 78 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHHH-HHhhcCC-cceeee-cCCeEEEEE-EEeecceeEEEEEEEEEccccCCCcEEEEEe
Confidence 56789999999999999999999 8899998 999994 676211111 1222211111133556667789999998888
Q ss_pred EecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCC-CCCChHHHH-HHHHHHHHHHHHHHHhhhh
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGD-QELKEELMK-DAEEKATALYNIVEAHLLA 153 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~~l~~ 153 (159)
-+|..- .+-+.++.+++.|.+++ |++.|.++-+..+- ...-+..++ .+++.+..+++.|.++|.+
T Consensus 79 ~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~~ 145 (146)
T COG3427 79 SGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELAA 145 (146)
T ss_pred eccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 664433 57788889999999876 99999999887653 222334455 5566678888888888754
No 25
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=99.01 E-value=2.4e-08 Score=73.14 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=83.6
Q ss_pred EEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCC-c-eeeeEEEEEEeecCCCeEEEEEE
Q 031459 9 EAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGG-D-FKHSKQRIDALDKDNLTSKYTVY 86 (159)
Q Consensus 9 e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~-~-~~~~kErl~~~D~~~~~~~y~i~ 86 (159)
+.+|++|+++||+.+.|+.+ +-+.+|+ +++++.+. +.--+.+ +..-|. + .-..+=++..+|+.++.. .++-
T Consensus 2 s~~v~a~~~~vw~~l~D~~~-l~~ciPG-~~~~e~~~-~~~~~~~---~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~~ 74 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPEN-LARCIPG-VESIEKVG-DEYKGKV---KVKVGPIKGTFDGEVRITEIDPPESYT-LEFE 74 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHH-HHHHSTT-EEEEEEEC-TEEEEEE---EEESCCCEEEEEEEEEEEEEETTTEEE-EEEE
T ss_pred cEEecCCHHHHHHHhcCHHH-HHhhCCC-cEEeeecC-cEEEEEE---EEEeccEEEEEEEEEEEEEcCCCcceE-eeee
Confidence 57899999999999999999 8899998 88998764 4211222 222221 1 113344556677777652 3333
Q ss_pred ecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCC-CCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 87 EGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGD-QELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 87 eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~-~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
..+.. .-.+..+.+++...++++|.+.|+.+++..+- .......++ .....+..+++.|++.|
T Consensus 75 g~g~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 75 GRGRG--GGSSASANITLSLEDDGGTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EEECT--CCEEEEEEEEEEECCCTCEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc--cceEEEEEEEEEcCCCCCcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 32322 24466777777776666699999999998764 333444454 34445677777777654
No 26
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.96 E-value=5.7e-09 Score=79.29 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=86.5
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEee--cCCceeeeEEEEEEeecCCCe
Q 031459 3 VIRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA--DGGDFKHSKQRIDALDKDNLT 80 (159)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~--~g~~~~~~kErl~~~D~~~~~ 80 (159)
...++.+++|++|+++||..++|+.+ +|.||.+ +.|+++.+-.. .+|+.. .|..+ .++-+|+ -|..+.+
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v-~Wea~it-~d~~~e~ 139 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEV-EWEAEIT-KDIPGER 139 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceE-EEeehhh-ccCCCcE
Confidence 35789999999999999999999999 9999985 99999876542 355554 33444 4555555 4999999
Q ss_pred EEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcC
Q 031459 81 SKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKG 124 (159)
Q Consensus 81 ~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~ 124 (159)
|.|+-++|.-.. + ++.++|.+..+..|+|+.++.|.+-+
T Consensus 140 I~W~Sl~Ga~v~----N-sG~VrF~~~pg~~t~V~v~lsY~~Pg 178 (217)
T COG5637 140 IQWESLPGARVE----N-SGAVRFYDAPGDSTEVKVTLSYRPPG 178 (217)
T ss_pred EeeecCCCCcCC----C-CccEEeeeCCCCceEEEEEEEecCCc
Confidence 999999996442 1 67899999887789999999999754
No 27
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.86 E-value=7.8e-08 Score=69.47 Aligned_cols=139 Identities=12% Similarity=0.136 Sum_probs=82.8
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|+||+++||+++.|++. +++|.|... ....-|.+..| .+.+.++ ......-++..+++. +++.|+
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~-~~~W~~~~~--~~~~~~~~~~g---~~~~~~~-~~~~~~~~i~~~~p~-~~l~~~ 73 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEH-FGQWFGVKL--GPFVVGEGATG---EITYPGY-EHGVFPVTVVEVDPP-RRFSFR 73 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhh-hhhcccccC--CCcccCCccee---EEecCCC-CccceEEEEEEeCCC-cEEEEE
Confidence 478899999999999999999999 899998632 11111222223 2333322 111344566666554 467787
Q ss_pred EEecC----CCccceeEEEEEEEEeecCCCcceEEEEEE-EEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhh
Q 031459 85 VYEGE----GAAAIFEKAVYDVKFEASGNGGSICKVAAE-CHIKGDQELKEELMKDAEEKATALYNIVEAHLLA 153 (159)
Q Consensus 85 i~eg~----~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~ 153 (159)
..... .....-.....+++|.+.+ ++|.++++.. |...++.. .+.......++...++..|++||-+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~-~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 74 WHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAER-RAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred ecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHH-HHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 64332 0000122356888899876 4699999876 43221100 0112234556778999999999853
No 28
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.83 E-value=1.4e-07 Score=70.12 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=87.9
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEE
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKY 83 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
.++..+..|++|+++||+++.|+.+ +++|.|.. .++-.+|....+.+...+. .....++.++|+. +++.|
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~-~~~W~~~~-------~~~~~~G~~~~~~~~~~~~-~~~~~~v~e~~p~-~~l~~ 80 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPER-LARWFAPG-------TGDLRVGGRVEFVMDDEEG-PNATGTILACEPP-RLLAF 80 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHH-HHhhcCCC-------CCCcccCceEEEEecCCCC-CccceEEEEEcCC-cEEEE
Confidence 4688999999999999999999999 99999842 1222345555555543211 2456677766666 57888
Q ss_pred EEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCC
Q 031459 84 TVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANP 155 (159)
Q Consensus 84 ~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 155 (159)
+...++ .....++.|.+.+ ++|.++.+.++.+.. +......++...++..|.+||-+.+
T Consensus 81 ~~~~~~------~~~~~~~~l~~~~-~gT~v~~~~~~~~~~------~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 81 TWGEGG------GESEVRFELAPEG-DGTRLTLTHRLLDER------FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EecCCC------CCceEEEEEEEcC-CCEEEEEEEeccCch------hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 875443 1235678888765 579988887776433 1222344677888999999987765
No 29
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.70 E-value=2.8e-06 Score=61.86 Aligned_cols=137 Identities=20% Similarity=0.198 Sum_probs=81.1
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccc-eeeEEEEcCCCCcccEEEEEee-cCCceeeeEEEEEEeecCCCeEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQA-FKSIDILQGDGGVGTIKLWNFA-DGGDFKHSKQRIDALDKDNLTSKY 83 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~-i~s~~~~eG~g~~G~vR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
+..+..+++|+++||+++.|... +.+|+.+. --.+...+.+-.+|..-.+.+. .++......=++.++|+.+ ++.|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEEE
Confidence 56778899999999999999998 78887530 1112222333223333333332 3433234445666677655 5666
Q ss_pred EEE--ecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 031459 84 TVY--EGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 84 ~i~--eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (159)
+-. .++.. -.....++.|.+.+ |+|.++.+...-..++. +......++...++..|+++|-
T Consensus 80 t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~----~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 80 TYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGD----DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEeccccc----chhhhHHHHHHHHHHHHHHHHh
Confidence 642 22221 11235788888875 57998888765322211 1123345678889999999874
No 30
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.70 E-value=9.3e-07 Score=62.99 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=81.2
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+++.++.|+||+++||+++.|+.. ++.|.++.. .+++-.+|.--.+.....+. ..+.=++.+++ ..+++.|+
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~~ 72 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVHT 72 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEEE
Confidence 478899999999999999999999 899987622 12332333332333332111 13445566666 55567777
Q ss_pred EEecCCCc-cceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 031459 85 VYEGEGAA-AIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 85 i~eg~~~~-~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (159)
...+.... ..-.....++.+.+.++ +|+++.+.+..+.+ +............+++.|.++|-
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~-----~~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 73 WRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPG-----SPTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCc-----hhHHHhhhcCHHHHHHHHHHHhc
Confidence 64333210 01224677888888754 67766665543221 12333455677889999998873
No 31
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.65 E-value=8.2e-06 Score=62.35 Aligned_cols=144 Identities=13% Similarity=0.081 Sum_probs=92.2
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCc---eeeeEEEEEEeecCCCe
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGD---FKHSKQRIDALDKDNLT 80 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~---~~~~kErl~~~D~~~~~ 80 (159)
..+..+..|++|++++|+++.|.+. .|+|.|. +.++++++-.+.--.+-.+.+....+ ...+..+-...+..+..
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 4578889999999999999999999 8999996 88999988553212233333332211 11222221122322445
Q ss_pred EEEEEEecCC--Cc-c---ceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 81 SKYTVYEGEG--AA-A---IFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 81 ~~y~i~eg~~--~~-~---~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
+...+..++. +. . ....+.+.+.++|.++++|.+++...+++.+ ..|...++ .++.....++++|++.+
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g--~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGG--SIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5445544432 11 1 1467788899999888889999999888864 34445554 44455678888887764
No 32
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.61 E-value=2e-06 Score=62.50 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=79.0
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccc-cceeeEEEEcCCCCcccEEEEEe-ecCCceeeeEEEEEEeecCCCeEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAP-QAFKSIDILQGDGGVGTIKLWNF-ADGGDFKHSKQRIDALDKDNLTSKY 83 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P-~~i~s~~~~eG~g~~G~vR~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
+..+..|++|+++||+++.|... +.+|++ ..+. +...+.+-.+|..-.+.+ .+++..-...=++.++++.+ +|.|
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~-l~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~~ 78 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEH-LAQWWGPEGFT-NTTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIVY 78 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHH-HhhccCcCCCc-ceEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence 56788999999999999999988 777763 3222 111222322333333333 22332112344667777655 7778
Q ss_pred EEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHH-HHHHHHHHHHHHHHHHHhhh
Q 031459 84 TVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEEL-MKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 84 ~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~-~~~~~~~~~~~~k~ie~~l~ 152 (159)
+...++ . ....+++|.|.+ ++|.++.+..|..... . ... .....++...++..|++||.
T Consensus 79 t~~~~~----~--~~~v~~~~~~~~-~gT~ltl~~~~~~~~~--~-~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 79 DHGSGP----P--RFRLTVTFEEQG-GKTRLTWRQVFPTAAE--R-CEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EeccCC----C--cEEEEEEEEECC-CCEEEEEEEEcCCHHH--H-HHHHHhCHHHHHHHHHHHHHHHHh
Confidence 764331 1 245788998875 6799888876531100 0 000 11345667889999999874
No 33
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.60 E-value=3.8e-06 Score=61.37 Aligned_cols=138 Identities=15% Similarity=0.082 Sum_probs=81.5
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEee-cCCceeeeEEEEEEeecCCCeEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA-DGGDFKHSKQRIDALDKDNLTSKYT 84 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~ 84 (159)
+..+..+++|+++||+++.|.+. +.+|++..--.+...+.|-.+|..-.+.+. +++....+.=++.++|+.+ +|.|+
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEEE
Confidence 56788999999999999999988 677765432222233344233333344443 3332223444566677654 55555
Q ss_pred EE-ecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 031459 85 VY-EGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 85 i~-eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (159)
-. ++... .....++.|.+.+ |+|.++.+..|.... ...........++...++..|++||.
T Consensus 80 ~~~~~~~~----~~s~v~~~l~~~~-~gT~l~l~~~~~~~~--~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 80 EEFEGLPD----GVALETVTFTELG-GRTRLTATSRYPSKE--ARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred eEecCCCC----CceEEEEEEEECC-CCEEEEEEEEeCCHH--HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 32 22211 2346788888875 679988876653210 00001122455678899999999985
No 34
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.59 E-value=2.4e-06 Score=61.55 Aligned_cols=128 Identities=12% Similarity=0.158 Sum_probs=77.7
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceee--EEEEcCCCCcccEEEEEee-cCCc-eeeeEEEEEEeecCCCe
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKS--IDILQGDGGVGTIKLWNFA-DGGD-FKHSKQRIDALDKDNLT 80 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s--~~~~eG~g~~G~vR~~~~~-~g~~-~~~~kErl~~~D~~~~~ 80 (159)
|+..++.|+||+++||+++.|... +.+|++. ... +...+.|-.+|..-.+.+. .++. ...+.=++.++++. ++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~-~~ 77 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPH-KL 77 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCC-CE
Confidence 577899999999999999999998 8888643 111 1111233233444333332 2221 11234455566655 47
Q ss_pred EEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 031459 81 SKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 81 ~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (159)
+.|+...+ ...++.|.|.+ ++|.++.+ +...+. .......++...++..|++||-
T Consensus 78 l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~-----~~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 78 IEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENE-----NPVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred EEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCC-----CcHHHHHHHHHHHHHHHHHHhh
Confidence 88886321 25688999875 57887765 443221 1122345678899999999984
No 35
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.59 E-value=9e-06 Score=59.48 Aligned_cols=136 Identities=17% Similarity=0.131 Sum_probs=80.3
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCcccccccc-ceeeEEEEcCCCCcccEEEE--Eeec------CCceeeeEEEEEEee
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQ-AFKSIDILQGDGGVGTIKLW--NFAD------GGDFKHSKQRIDALD 75 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~-~i~s~~~~eG~g~~G~vR~~--~~~~------g~~~~~~kErl~~~D 75 (159)
++..+..|+||+++||+++.|... +.+|.+. .+ .+.....+-.+|..-.+ ++.. ++......=++.+++
T Consensus 1 ~~~~~r~i~ap~e~Vw~a~td~~~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~ 78 (146)
T cd08895 1 TDRLHRVIAAPPERVYRAFLDPDA-LAKWLPPDGM-TGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELV 78 (146)
T ss_pred CEEEEEEECCCHHHHHHHHcCHHH-HhhcCCCCCe-EeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEc
Confidence 356788999999999999999998 7787752 22 22222233222323222 2222 121123344667777
Q ss_pred cCCCeEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhh
Q 031459 76 KDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 76 ~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (159)
+.+ +|.|+..-.+... + .....++.|++.+ ++|.++++...-+.. .......+....++..|++||-
T Consensus 79 p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~------~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 79 PNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDG------IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred CCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCch------hhhhHHHHHHHHHHHHHHHHhc
Confidence 665 6777753222111 1 2346888888875 579988887643211 1112445788999999999985
No 36
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.58 E-value=1.6e-05 Score=58.14 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=76.8
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccc-eeeEEEEcCCCCcccEEEEEe-ecCCceeeeEEEEEEeecCCCeEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQA-FKSIDILQGDGGVGTIKLWNF-ADGGDFKHSKQRIDALDKDNLTSKY 83 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~-i~s~~~~eG~g~~G~vR~~~~-~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
+..+..|+||+++||+++.|... +.+|++.. . .+...+.|-.+|..-.+.+ .+++..-...=++.++|+.+ +|.|
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~ 78 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPEL-LKQWFCPKPW-TTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF 78 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHH-HhccCCCCCc-cceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence 56788999999999999999988 67776521 1 1111122212222323333 23333223445677787765 5666
Q ss_pred E--EEecC-CCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-----HHHHHHHHHHHHHHHhhh
Q 031459 84 T--VYEGE-GAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-----DAEEKATALYNIVEAHLL 152 (159)
Q Consensus 84 ~--i~eg~-~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-----~~~~~~~~~~k~ie~~l~ 152 (159)
+ +-++. ....+ ....+++|++.+ ++|.++.+..+.. ++..+ .+.++...++..|++||.
T Consensus 79 t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~-------~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 79 TDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHWT-------EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeCC-------HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 6 32221 11111 145688898864 5798887654421 11121 124678899999999885
No 37
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.43 E-value=9.6e-06 Score=56.86 Aligned_cols=122 Identities=14% Similarity=0.200 Sum_probs=74.3
Q ss_pred cCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEEecCCCc
Q 031459 13 AVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAA 92 (159)
Q Consensus 13 ~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~~ 92 (159)
+||+++||+++.+... +.+|.+......+. ..| |..+. . .+++......=++.++++.+ +|.|+..-++..
T Consensus 1 ~ap~e~Vw~a~t~~~~-~~~W~~~~~~~~~~--~~G--g~~~~-~-~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~- 71 (124)
T PF08327_consen 1 DAPPERVWEALTDPEG-LAQWFTTSEAEMDF--RPG--GSFRF-M-DPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP- 71 (124)
T ss_dssp SSSHHHHHHHHHSHHH-HHHHSEEEEEEEEC--STT--EEEEE-E-ETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS-
T ss_pred CcCHHHHHHHHCCHhH-HhhccCCCcceeee--ecC--CEEEE-E-ecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC-
Confidence 6899999999999998 88893211222222 123 34444 2 24443223343477777766 477875434322
Q ss_pred cceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHH-HHHHHHHHHHHHHHhh
Q 031459 93 AIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKD-AEEKATALYNIVEAHL 151 (159)
Q Consensus 93 ~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~-~~~~~~~~~k~ie~~l 151 (159)
.-.....++.|.+ .+++|.++.+..-. ++....+. ...+...++..|.+||
T Consensus 72 -~~~~~~v~~~~~~-~~~~T~l~~~~~~~------~~~~~~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 72 -DGPESRVTFEFEE-EGGGTRLTLTHSGF------PDDDEEEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp -SCEEEEEEEEEEE-ETTEEEEEEEEEEE------HSHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEEEEEE-cCCcEEEEEEEEcC------CccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235578889989 55678877776322 12222333 6678889999999887
No 38
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.42 E-value=2.6e-06 Score=62.87 Aligned_cols=112 Identities=15% Similarity=0.184 Sum_probs=86.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEE
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKY 83 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
.+++...-++-+|+++|+++.|... .|+.+|. -.+.++.+.++ ...+=.++.+-++=-++..-|.. .++..+.|.-
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~~ 77 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSIDM 77 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhhh
Confidence 4678899999999999999999999 9999996 67777777663 23444455543321245566655 5666668887
Q ss_pred EEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcC
Q 031459 84 TVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKG 124 (159)
Q Consensus 84 ~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~ 124 (159)
++++| |++...++|+|+|.++++|.|+..++|+...
T Consensus 78 ~l~~G-----PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s 113 (146)
T COG2867 78 KLIDG-----PFKYLKGGWQFTPLSEDACKVEFFLDFEFKS 113 (146)
T ss_pred hhhcC-----ChhhhcCceEEEECCCCceEEEEEEEeeehh
Confidence 88888 4888999999999878899999999999864
No 39
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.37 E-value=3.5e-05 Score=56.51 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=76.2
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccce-------eeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCC
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAF-------KSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDN 78 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i-------~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~ 78 (159)
++.++.|+||+++||+++.| . +.+|++..- ..|++--..| |..+ +... ++. ....=++.++|+.+
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~~~-~g~-~~~~g~v~~v~p~~ 73 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EIGE-DGT-ECEWGTVLAWEPPS 73 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-EecC-CCc-EeceEEEEEEcCCC
Confidence 67899999999999999998 3 555553211 2333211113 3333 2222 232 12334666677665
Q ss_pred CeEEEEEE-ecCCC-ccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCC-CChHHHHHHHHHHHHHHHHHHHhhh
Q 031459 79 LTSKYTVY-EGEGA-AAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQE-LKEELMKDAEEKATALYNIVEAHLL 152 (159)
Q Consensus 79 ~~~~y~i~-eg~~~-~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~-~~~~~~~~~~~~~~~~~k~ie~~l~ 152 (159)
+|.|+-. ..+.. .... .-..+++|++.++++|.++.+...-...... ..........++...++..|++||-
T Consensus 74 -~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 74 -RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred -EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 5667643 21111 0111 2368889999764679988887765422100 1111122334567888999998874
No 40
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=0.00023 Score=52.72 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=78.5
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEE
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKY 83 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y 83 (159)
.++..+..|++|+++||+++.|... +.+|+.+-=...+..-|. +....+....| +.....-++.++++.. +|.|
T Consensus 8 ~~~~~er~i~aP~e~Vf~A~Tdpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~-rIv~ 81 (149)
T COG3832 8 RTLEIERLIDAPPEKVFEALTDPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPE-RIVF 81 (149)
T ss_pred ceEEEEEeecCCHHHHHHHhcCHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCc-EEEE
Confidence 5789999999999999999999997 888885210001111121 22333444433 2234556666676655 5556
Q ss_pred EEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHH--HHHHHHHHHHHHHHhhh
Q 031459 84 TVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKD--AEEKATALYNIVEAHLL 152 (159)
Q Consensus 84 ~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~--~~~~~~~~~k~ie~~l~ 152 (159)
+-.-.+... +...-..++++++..+|+ +++..........+....... +.++...++..++++|.
T Consensus 82 tw~~~~~~~-~~~~~~v~~~l~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 82 TWDFDEDGE-PFLKSLVTITLTPEDDGG---TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EeccCCCCC-cccCceEEEEEEEecCCC---cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 643333221 223447788888866654 233333333322122221111 25678889999988874
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.09 E-value=0.00029 Score=50.39 Aligned_cols=122 Identities=9% Similarity=0.065 Sum_probs=72.2
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
++.+..|+||+++||+++.+... +.+|+.. ..+.+... | |..+ +.+|. +.=++.++++. +++.|+-
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~-l~~W~~~-~~~~d~~~--G--G~~~---~~~g~----~~g~~~~i~p~-~~l~~~w 67 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEER-VQAFTRS-PAKVDAKV--G--GKFS---LFGGN----ITGEFVELVPG-KKIVQKW 67 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHH-HHhhcCC-CceecCCC--C--CEEE---EeCCc----eEEEEEEEcCC-CEEEEEE
Confidence 56789999999999999999988 7888753 33444322 2 3333 33331 33355666654 4566664
Q ss_pred EecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHH-HHHHHHHhh
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATA-LYNIVEAHL 151 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l 151 (159)
.-.+... -..-..++.|.+. +++|.++.+....+. +......+.... +++.|.++|
T Consensus 68 ~~~~~~~--~~~s~v~~~l~~~-~~gT~ltl~~~g~~~-------~~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 68 RFKSWPE--GHYSTVTLTFTEK-DDETELKLTQTGVPA-------GEEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EcCCCCC--CCcEEEEEEEEEC-CCCEEEEEEEECCCC-------chHHHHHhhHHHHHHHHHHHHh
Confidence 3222111 1124578888887 457887776654432 122334456554 778887776
No 42
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.03 E-value=0.00019 Score=51.93 Aligned_cols=129 Identities=15% Similarity=0.096 Sum_probs=77.7
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
++.++.|+||+++||+++.+... +.+|.+. -.+.++. +|..-.+.+...++ ...=++.++++. +++.|+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~w 71 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIEW 71 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEEe
Confidence 46789999999999999999998 7776443 2233332 23333455544332 223356667554 5777876
Q ss_pred EecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH---HHHHHHHHHHHHHHHhhhhC
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK---DAEEKATALYNIVEAHLLAN 154 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~---~~~~~~~~~~k~ie~~l~~~ 154 (159)
..++ +. -..+++|.+.++|+|.++.+...-+. .+++..+ ....+...++..|++||...
T Consensus 72 ~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~----~~~~~~~~~~~~~~GW~~~L~~L~~~le~g 133 (136)
T cd08901 72 GDPG----EP--TTVEWTFEELDDGRTFVTITESGFPG----TDDEGLKQALGSTEGWTLVLAGLKAYLEHG 133 (136)
T ss_pred cCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCC----CcHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 4321 12 34788888876567887777543221 1111111 12355678899999998654
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.82 E-value=0.0003 Score=50.99 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=66.8
Q ss_pred ecCCHHHHHHHhhhcCCccccc-cccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEEecCC
Q 031459 12 AAVAPSRMFKAFVDSHNLLPKI-APQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEG 90 (159)
Q Consensus 12 i~apa~~vw~~~~d~~~~~p~~-~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~ 90 (159)
++||+++||+++-|.+. +.+| .+. ...++... | |.-+. ..+. +.=+..++|+.+ +|.|+-.-.+.
T Consensus 1 f~ap~e~Vw~A~Tdp~~-l~~w~~~~-~~~~d~~~--G--G~f~~---~~~~----~~G~~~ev~pp~-rlv~tw~~~~~ 66 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYT-LTRLSLGS-PAEMDAKV--G--GKFSL---FNGS----VEGEFTELEKPK-KIVQKWRFRDW 66 (132)
T ss_pred CCCCHHHHHHHHcCHHH-HHHHhcCC-CccccCCc--C--CEEEE---ecCc----eEEEEEEEcCCC-EEEEEEecCCC
Confidence 47999999999999987 7777 432 21222222 2 33332 2221 223555566665 44455321211
Q ss_pred CccceeEEEEEEEEeecCCCcceEEEEEE-EEEcCCCCCChHHHHHHHHHHHH-HHHHHHHhh
Q 031459 91 AAAIFEKAVYDVKFEASGNGGSICKVAAE-CHIKGDQELKEELMKDAEEKATA-LYNIVEAHL 151 (159)
Q Consensus 91 ~~~~~~~y~~t~~v~~~~~g~s~v~W~~~-ye~~~~~~~~~~~~~~~~~~~~~-~~k~ie~~l 151 (159)
....+ -..|+.|.+.++|+|.++.+.. +........ ........++... ++..|++||
T Consensus 67 ~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~-~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 67 EEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGN-GGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCC-CchhhHHHhChHHHHHHHHHHHh
Confidence 11112 2588899887667898888877 322211100 0011123456666 699999887
No 44
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.46 E-value=0.019 Score=45.91 Aligned_cols=145 Identities=12% Similarity=0.042 Sum_probs=89.1
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEeec---CCceeeeEEEEEEe--ecCC
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNFAD---GGDFKHSKQRIDAL--DKDN 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~~~---g~~~~~~kErl~~~--D~~~ 78 (159)
.+..+..+++|++++|+++.|... -++|.+. ..++++++--+ ..+ +-.+.+.. -.+-..+.-+-... +...
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~-R~~WD~~-~~e~evI~~id~d~~-iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFK-RPEWDPH-GRSCEEVKRVGEDDG-IYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcch-hhhhhhc-ccEEEEEEEeCCCcE-EEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 467888999999999999999999 8999986 88999987322 223 33333332 11112222221111 2222
Q ss_pred -CeEEEEEEe-cCCCc----cceeEEEEEEEEeecCCCcceEEEEEEEEEcC-CCCCChHHHHHHHHHHHHHHHHHHHhh
Q 031459 79 -LTSKYTVYE-GEGAA----AIFEKAVYDVKFEASGNGGSICKVAAECHIKG-DQELKEELMKDAEEKATALYNIVEAHL 151 (159)
Q Consensus 79 -~~~~y~i~e-g~~~~----~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~-~~~~~~~~~~~~~~~~~~~~k~ie~~l 151 (159)
..+..+-+. ...++ .....+.+-+.+.|.++|+|.|......+|.- ... ...+..+-..+...+++.++||
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 232 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYV--TCNLAGLSALYCRTFHCCEQFL 232 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCcccee--eecchhhhHHHHHHHHHHHHHh
Confidence 233333333 11110 12567889999999988899999998888742 211 1112233346678888888998
Q ss_pred hhC
Q 031459 152 LAN 154 (159)
Q Consensus 152 ~~~ 154 (159)
..|
T Consensus 233 ~~~ 235 (235)
T cd08873 233 VTN 235 (235)
T ss_pred ccC
Confidence 765
No 45
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.41 E-value=0.02 Score=44.78 Aligned_cols=143 Identities=10% Similarity=-0.001 Sum_probs=83.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEee-c--C--CceeeeEEEEEEeecCC
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNFA-D--G--GDFKHSKQRIDALDKDN 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~~-~--g--~~~~~~kErl~~~D~~~ 78 (159)
.+..+..|++|++++|+++.|..+ -++|.+ .++++++++--+ .. .+-.+.+. + . .+-..+.-+-...+...
T Consensus 46 ~~~ge~~v~as~~~v~~ll~D~~~-r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~ 122 (205)
T cd08874 46 GFLGAGVIKAPLATVWKAVKDPRT-RFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPRDFCCLQVEAKEGEL 122 (205)
T ss_pred eEEEEEEEcCCHHHHHHHHhCcch-hhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCCeEEEEEEEEECCCc
Confidence 355788999999999999999999 899998 599999987533 22 33333332 2 2 11122222222123333
Q ss_pred CeEEEEEEec-CCCc-----cceeEEEEEEEEeec---CCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHH
Q 031459 79 LTSKYTVYEG-EGAA-----AIFEKAVYDVKFEAS---GNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEA 149 (159)
Q Consensus 79 ~~~~y~i~eg-~~~~-----~~~~~y~~t~~v~~~---~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~ 149 (159)
..+.-+-+.- .++. .....+.+-+.+.|. ++|.|.++..+..+|.+++-|+ -..+.+....-.+...|..
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~-~l~N~~~~~~p~~~~~~~~ 201 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA-QLLSSLSKRQPLVIARLAL 201 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH-HHHhHHHHhccHHHHHHHH
Confidence 2333332232 1111 124567788999998 7778999999999998544333 3333222233333444444
Q ss_pred hh
Q 031459 150 HL 151 (159)
Q Consensus 150 ~l 151 (159)
||
T Consensus 202 ~~ 203 (205)
T cd08874 202 FL 203 (205)
T ss_pred Hh
Confidence 43
No 46
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.02 E-value=0.1 Score=40.71 Aligned_cols=144 Identities=9% Similarity=0.025 Sum_probs=81.4
Q ss_pred EEEEEEEecCCHHHHH-HHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEeecC-Cc---eeeeEEEEEEeecCC
Q 031459 5 RFEKEAPAAVAPSRMF-KAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNFADG-GD---FKHSKQRIDALDKDN 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw-~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~~~g-~~---~~~~kErl~~~D~~~ 78 (159)
.+..+..+++|++++| .++.|... .++|.+. +.++++++--+ .---++.++.... ++ -..+.-|-..-+...
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhChhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCc
Confidence 3678899999999998 68899999 9999986 88988886432 1111222333221 11 123333333233333
Q ss_pred C-eEEEEEEecCCCc-ccee----EEEEEEEEee-cCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHh
Q 031459 79 L-TSKYTVYEGEGAA-AIFE----KAVYDVKFEA-SGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAH 150 (159)
Q Consensus 79 ~-~~~y~i~eg~~~~-~~~~----~y~~t~~v~~-~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~ 150 (159)
. .+..++.-...++ .+|- ...+-+...+ .++++|.+.|.+-.+|.+. .|.-..+ .+.+.....++.|.++
T Consensus 128 ~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~--lP~~lvN~~~~~~~~~~~~~LR~~ 205 (209)
T cd08906 128 YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR--LPRYLIHQSLAATMFEFASHLRQR 205 (209)
T ss_pred EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222332222111 1111 1223333333 4567899999999999874 3333333 5666677788888777
Q ss_pred hh
Q 031459 151 LL 152 (159)
Q Consensus 151 l~ 152 (159)
|.
T Consensus 206 ~~ 207 (209)
T cd08906 206 IR 207 (209)
T ss_pred Hh
Confidence 64
No 47
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.053 Score=39.80 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=75.6
Q ss_pred cEEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEee---cCCc-eeeeEEEEEE--eec
Q 031459 3 VIRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA---DGGD-FKHSKQRIDA--LDK 76 (159)
Q Consensus 3 ~~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~---~g~~-~~~~kErl~~--~D~ 76 (159)
++++.....|++|.+.||+..+..++ +...-|..+ +-+-+|+ .++..-.++++ -|.+ -..++-|+++ .|+
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrpd~-lq~LTppw~--VV~p~g~-eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~ 76 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRPDA-LQRLTPPWI--VVLPLGS-EITQGTRIAMGLTPFGLPAGLTWVARHTESGFDN 76 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCccH-HHhcCCCcE--EeccCCC-cccceeeeeecceeecCCCCceEEEEeeecccCC
Confidence 46788999999999999999998888 667777643 2222342 23333334332 1222 1367778776 565
Q ss_pred CCCeEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcC
Q 031459 77 DNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKG 124 (159)
Q Consensus 77 ~~~~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~ 124 (159)
-. +++=..+.|+... + +..-+-+|.+.+ |+|++.=++.|+...
T Consensus 77 ~~-~FtDv~i~gPfp~--~-~WrHtH~F~~eg-g~TvliD~Vsye~p~ 119 (153)
T COG4276 77 GS-RFTDVCITGPFPA--L-NWRHTHNFVDEG-GGTVLIDSVSYELPA 119 (153)
T ss_pred cc-eeeeeeecCCccc--e-eeEEEeeeecCC-CcEEEEeeEEeeccC
Confidence 54 5566677776542 2 588889998885 479999999999753
No 48
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.99 E-value=0.079 Score=41.22 Aligned_cols=145 Identities=9% Similarity=0.018 Sum_probs=86.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeec---CCceeeeE--EEEEEeecCC
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD---GGDFKHSK--QRIDALDKDN 78 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~---g~~~~~~k--Erl~~~D~~~ 78 (159)
..+..+..|++|++++..++.|.+. .++|.|. ..+.+.++..+..-.+-.+.+.. -..-..+- -.++.+| ++
T Consensus 46 ~~~k~e~~i~~~~~~~~~vl~d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-~~ 122 (215)
T cd08877 46 LSLRMEGEIDGPLFNLLALLNEVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-EN 122 (215)
T ss_pred EEEEEEEEecCChhHeEEEEehhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-cC
Confidence 4578899999999999999999987 9999997 44555554432112222333221 11101111 1112122 33
Q ss_pred CeEEEEE--EecC----------CCcc-----ceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHH
Q 031459 79 LTSKYTV--YEGE----------GAAA-----IFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKA 140 (159)
Q Consensus 79 ~~~~y~i--~eg~----------~~~~-----~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~ 140 (159)
..+.... +..+ ++.. ....+.+-+.++|.++++|.+++.+..+|.+.. .|.-.++ .+++.+
T Consensus 123 ~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~-IP~~liN~~~k~~~ 201 (215)
T cd08877 123 GQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSL-VPKSLLNFVARKFA 201 (215)
T ss_pred CCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCccc-CCHHHHHHHHHHHH
Confidence 3333222 1110 1111 135677888999998889999999888876542 3445554 566677
Q ss_pred HHHHHHHHHhhh
Q 031459 141 TALYNIVEAHLL 152 (159)
Q Consensus 141 ~~~~k~ie~~l~ 152 (159)
..++++|..-+.
T Consensus 202 ~~~~~~l~k~~~ 213 (215)
T cd08877 202 GLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 49
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.96 E-value=0.072 Score=41.53 Aligned_cols=143 Identities=10% Similarity=0.033 Sum_probs=85.3
Q ss_pred EEEEEEecCCHHHHH-HHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEeec-CC---ceeeeEEEEEEeecCCC
Q 031459 6 FEKEAPAAVAPSRMF-KAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNFAD-GG---DFKHSKQRIDALDKDNL 79 (159)
Q Consensus 6 ~~~e~~i~apa~~vw-~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~~~-g~---~~~~~kErl~~~D~~~~ 79 (159)
+..+..|++|+++++ .++-|.+. .++|.+. +.++++++--+ ..--++.+.... ++ +-..+.-|....+..+.
T Consensus 51 ~k~e~~i~~~~~~l~~~l~~d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 51 FRLEVVVDQPLDNLYSELVDRMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred EEEEEEecCCHHHHHHHHHhchhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 678899999999999 66668888 8999986 77888776432 111133322221 11 11223323222333333
Q ss_pred eEEEEEEecCCCc-----cceeEEEEEEEEeecCC--CcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 80 TSKYTVYEGEGAA-----AIFEKAVYDVKFEASGN--GGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 80 ~~~y~i~eg~~~~-----~~~~~y~~t~~v~~~~~--g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
.+.....+-+-.+ .....+.+-+.+.|.++ ++|.+.|.+-.+|++. .|.-..+ .+.+.....++.|.+++
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~--iP~~lvN~~~~~~~~~~~~~Lr~~~ 206 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGW--LPKSIINQVLSQTQVDFANHLRQRM 206 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCC--CCHHHHHHHhHHhHHHHHHHHHHHH
Confidence 3222222222111 01445667788999765 7899999999998765 3344444 44666778888888776
Q ss_pred h
Q 031459 152 L 152 (159)
Q Consensus 152 ~ 152 (159)
.
T Consensus 207 ~ 207 (209)
T cd08905 207 A 207 (209)
T ss_pred h
Confidence 5
No 50
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=96.95 E-value=0.093 Score=38.79 Aligned_cols=111 Identities=13% Similarity=0.221 Sum_probs=65.9
Q ss_pred HHHHHHHhh-hcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEEe-cCCCcc
Q 031459 16 PSRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYE-GEGAAA 93 (159)
Q Consensus 16 a~~vw~~~~-d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~e-g~~~~~ 93 (159)
.+++|.-+. ...+ -....|+ +.+|++++.++. ...|.++|+++ .++|++. +++ ..++.|.+-. |+
T Consensus 19 r~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~~-~l~Rel~f~~~----~v~e~vt-~~~-~~~v~f~~~~~g~---- 85 (141)
T cd08863 19 RAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESGT-VLERELTFGPA----KIRETVT-LEP-PSRVHFLQADAGG---- 85 (141)
T ss_pred HHHHHhHHHhhhCC-chhcccc-cceEEEEecCCC-EEEEEEEECCc----eEEEEEE-ecC-CcEEEEEecCCCC----
Confidence 569998765 4443 2345664 899999986642 56799999874 7999988 444 4477888765 32
Q ss_pred ceeEEEEEEEEeecCCCcceEEEEEEEEEc-CCCCCChHHHHHHHHHHHHHHHHHH
Q 031459 94 IFEKAVYDVKFEASGNGGSICKVAAECHIK-GDQELKEELMKDAEEKATALYNIVE 148 (159)
Q Consensus 94 ~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~-~~~~~~~~~~~~~~~~~~~~~k~ie 148 (159)
+.++.+....+| ..-.++.|+-. ++..+ ++ .+.+.+...++++.-+
T Consensus 86 -----~l~~~iee~~~g--~L~lrf~ye~~~p~~~~-~e-~~~~~~~~~~a~~~a~ 132 (141)
T cd08863 86 -----TLTNTIEEPEDG--ALYLRFVYETTLPEVAE-EE-AKAYQEIVKQAYKEAD 132 (141)
T ss_pred -----eEEEEeccCCCC--cEEEEEEEEecCCCcCc-hH-HHHHHHHHHHHHHHHH
Confidence 223333333333 35577778764 33333 22 2234455555555433
No 51
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=96.93 E-value=0.1 Score=41.89 Aligned_cols=144 Identities=12% Similarity=0.007 Sum_probs=83.2
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEeecC-Cc---eeeeEEEEEEeecCCC
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNFADG-GD---FKHSKQRIDALDKDNL 79 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~~~g-~~---~~~~kErl~~~D~~~~ 79 (159)
.+..+..+++|++++++++.|... .++|.++ +.++++++--+ .- .+..++..+- ++ -..+.-+-...+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~~-r~~Wd~~-~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLRR-RPEWDKH-YRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhh-hhhhHhh-ccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 456788999999999999999999 9999986 88999887432 22 2555543332 11 1122221111222232
Q ss_pred ---eEEEEEEe-cCCCc-c---ceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHH-HHHHHHHHHH
Q 031459 80 ---TSKYTVYE-GEGAA-A---IFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEK-ATALYNIVEA 149 (159)
Q Consensus 80 ---~~~y~i~e-g~~~~-~---~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~-~~~~~k~ie~ 149 (159)
.+..+... .+.++ . ...++.+-+.+.|.++++|.+.+...-+| + ..|.-..+ ...+. +...+.+-..
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP--G-~LP~~~~N~~~~~~p~~~~~~~~~~ 235 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP--G-VLPYISTDIAGLSSEFYSTFSACSQ 235 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC--c-cccHHHhhhhhhccchhHHHHHHHH
Confidence 13333333 22211 1 24556788899998888899877665554 3 33333332 22222 4566666666
Q ss_pred hhhhC
Q 031459 150 HLLAN 154 (159)
Q Consensus 150 ~l~~~ 154 (159)
||.+|
T Consensus 236 ~~~~~ 240 (240)
T cd08913 236 FLLDN 240 (240)
T ss_pred HhhcC
Confidence 66653
No 52
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=96.79 E-value=0.13 Score=38.13 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=81.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCc---eeeeEEEEEEeec-CCCe
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGD---FKHSKQRIDALDK-DNLT 80 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~---~~~~kErl~~~D~-~~~~ 80 (159)
.+..+..|++|++++|+++.|... .++|-|. +.++++++-....-.+....+....+ -..+--+-...++ ....
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~ 117 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLMDIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYV 117 (193)
T ss_pred eEEEEEEECCCHHHHHHHHhCCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEE
Confidence 467788999999999999999887 8899985 88999887543223444545543221 0112111121233 2222
Q ss_pred EEEEEEecCCCcc--c---eeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHh
Q 031459 81 SKYTVYEGEGAAA--I---FEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAH 150 (159)
Q Consensus 81 ~~y~i~eg~~~~~--~---~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~ 150 (159)
+...-++.+..+. . ...+.+-+.+.|.++++|.+.+.+..++.+.. |....+ .+.+....+.+.+..+
T Consensus 118 ~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~i--P~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 118 IVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSI--PKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCc--cHHHHHhhhhhccHHHHHHHHHh
Confidence 2222222210110 1 12234557788887789999999999887643 333333 4444455666655543
No 53
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=96.70 E-value=0.066 Score=39.90 Aligned_cols=98 Identities=13% Similarity=0.222 Sum_probs=52.4
Q ss_pred EEEEEEecCCH--------HHHHHHhh-hcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeec
Q 031459 6 FEKEAPAAVAP--------SRMFKAFV-DSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDK 76 (159)
Q Consensus 6 ~~~e~~i~apa--------~~vw~~~~-d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~ 76 (159)
+...++||-|. +++|+-+. ...+ -..+.| .|.+|++++-. +..-.|.++|+ + ..++|++. +.+
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp-~i~~c~Vl~e~-~~~~~R~v~fg--~--~~v~E~v~-~~~ 73 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVP-GIDSCEVLSES-DTVLTREVTFG--G--ATVRERVT-LYP 73 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH--GGGT-T-T--EEEEEEE--SSEEEEEEEET--T--EEEEEEEE-EET
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCcc-ccCeEEEEecC-CCeEEEEEEEC--C--cEEEEEEE-EeC
Confidence 45556666554 57998776 3333 234667 48999999755 34679999993 3 48999987 444
Q ss_pred CCCeEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEc
Q 031459 77 DNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIK 123 (159)
Q Consensus 77 ~~~~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~ 123 (159)
.. ++.|.... =+ +-++.+....+| ..-.++.|+-.
T Consensus 74 ~~-~V~f~~~~-------Gs--~lt~~I~e~~~g--~L~ltf~ye~~ 108 (149)
T PF08982_consen 74 PE-RVDFAQHD-------GS--SLTNIISEPEPG--DLFLTFTYEWR 108 (149)
T ss_dssp TT-EEEESSSB-------EE--EEEEEEEEEETT--EEEEEEEEEEE
T ss_pred Cc-EEEEEcCC-------CC--EEEEEEecCCCC--cEEEEEEEEec
Confidence 44 67772111 11 334444333233 55667777753
No 54
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=96.64 E-value=0.22 Score=38.73 Aligned_cols=143 Identities=9% Similarity=0.040 Sum_probs=80.2
Q ss_pred EEEEEEecCCHHHHHHHhhhcCC-ccccccccceeeEEEEcCC-CCcccEEEEEee-c-CC---ceeeeEEE-EEEeecC
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHN-LLPKIAPQAFKSIDILQGD-GGVGTIKLWNFA-D-GG---DFKHSKQR-IDALDKD 77 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~-~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~~~-~-g~---~~~~~kEr-l~~~D~~ 77 (159)
+..+..++++++++++.+.|..+ .-++|.+. +.++++++-- ....-++. ..+ + ++ +-..+.-| ....++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCCc
Confidence 67889999999999999987654 12799986 8888888753 22222222 222 1 11 11122211 1222333
Q ss_pred CCeEEEEEEecCCCc--ccee---E--EEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 031459 78 NLTSKYTVYEGEGAA--AIFE---K--AVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEA 149 (159)
Q Consensus 78 ~~~~~y~i~eg~~~~--~~~~---~--y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~ 149 (159)
.-.+.+...+-+-.+ .+|- . ..+.++..|.++++|.++|.+-.+|++.. |....+ .+.+.....++.|..
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~i--P~~lvn~~~~~~~~~~~~~Lr~ 203 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYL--PQTVVDSFFPASMAEFYNNLTK 203 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCc--CHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333332111 1111 1 23445555556678999999999987543 334443 445666778888877
Q ss_pred hhh
Q 031459 150 HLL 152 (159)
Q Consensus 150 ~l~ 152 (159)
++.
T Consensus 204 ~~~ 206 (208)
T cd08903 204 AVK 206 (208)
T ss_pred HHh
Confidence 764
No 55
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.56 E-value=0.12 Score=38.41 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=61.9
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCcccc---cccc---ceeeEEEEcCCCCcccEEEE-Eeec-CC--------c-eeee-
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPK---IAPQ---AFKSIDILQGDGGVGTIKLW-NFAD-GG--------D-FKHS- 67 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~---~~P~---~i~s~~~~eG~g~~G~vR~~-~~~~-g~--------~-~~~~- 67 (159)
++.++++++|+++||+++.|..- +.. -+.. .+.+++ .+|+| -+++.- .+.. .. + --.+
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~ 76 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT 76 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence 35788999999999999996542 221 2211 244444 23443 112111 1111 11 0 0122
Q ss_pred -EEEEEEeecCCCeEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEE
Q 031459 68 -KQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHI 122 (159)
Q Consensus 68 -kErl~~~D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~ 122 (159)
.|+-...++..++.+|++--.+.+ -+.++++.+.|.+ ++|++.++.+...
T Consensus 77 ~~e~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~~~-~gt~~~~~g~v~v 127 (159)
T PF10698_consen 77 RTETWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRPDG-GGTRLTVEGEVKV 127 (159)
T ss_pred EEEEEecCCCCeEEEEEEEEecCce----EEEEEEEEEecCC-CCEEEEEEEEEEE
Confidence 222222367888888886443322 2789999999954 5799999999886
No 56
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.14 E-value=0.44 Score=36.80 Aligned_cols=143 Identities=11% Similarity=0.020 Sum_probs=81.5
Q ss_pred EEEEEEecCCHHHHHH-HhhhcCCccccccccceeeEEEEcCC-CCcccEEEEEeecC-Cc---eeeeEEEEEEeecCCC
Q 031459 6 FEKEAPAAVAPSRMFK-AFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWNFADG-GD---FKHSKQRIDALDKDNL 79 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~-~~~d~~~~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~~~~g-~~---~~~~kErl~~~D~~~~ 79 (159)
+..+..|++|+++++. ++.|.+. .++|.+. +.++++++.- +..--+...+..+. .+ -..+--|-...++...
T Consensus 50 ~k~~~~i~~~~~~v~~~l~~d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 50 FRLTGVLDCPAEFLYNELVLNVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred EEEEEEEcCCHHHHHHHHHcCccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 6678899999999986 5558888 8999986 7787777643 22111222222221 11 1122222222334333
Q ss_pred eEEEEEEecCCCc--c---ceeEEEEEEEEeecCC--CcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 80 TSKYTVYEGEGAA--A---IFEKAVYDVKFEASGN--GGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 80 ~~~y~i~eg~~~~--~---~~~~y~~t~~v~~~~~--g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
.+...-++-+-.+ . ....+.+.+.+.|.++ ++|.+.|.+..+|.+..| .-..+ .+......++++|..++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP--~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLP--QYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCc--ceeeehhhHHHHHHHHHHHHHHH
Confidence 3333333311110 1 1334557788888754 579999999999876432 22232 34566677888888777
Q ss_pred h
Q 031459 152 L 152 (159)
Q Consensus 152 ~ 152 (159)
.
T Consensus 206 ~ 206 (208)
T cd08868 206 A 206 (208)
T ss_pred h
Confidence 5
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.05 E-value=0.51 Score=36.79 Aligned_cols=146 Identities=9% Similarity=-0.031 Sum_probs=81.2
Q ss_pred EEEEEEe-cCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecC--C-ceeeeEEEEEEeecCCCeE
Q 031459 6 FEKEAPA-AVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG--G-DFKHSKQRIDALDKDNLTS 81 (159)
Q Consensus 6 ~~~e~~i-~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g--~-~~~~~kErl~~~D~~~~~~ 81 (159)
+..+..+ ++|++.+++++.|... -++|.+. +..+++++--+.--.|..+.+... . +-..+--|....++....+
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~vi 126 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLHDPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEYII 126 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHHChhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEEEE
Confidence 5566666 6999999999999877 7899986 667777664321123434443311 1 1122222322223322222
Q ss_pred EEEEEecC-CCc-cc---eeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhhhhCC
Q 031459 82 KYTVYEGE-GAA-AI---FEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHLLANP 155 (159)
Q Consensus 82 ~y~i~eg~-~~~-~~---~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~~~~ 155 (159)
...-+.-+ .+. .+ ...+.+-+.+.|.++++|.+.|....++.+. .|.-..+ .+......++++|...+.+-+
T Consensus 127 ~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~--IP~~lvN~~~~~~~~~~l~~l~k~~~~y~ 204 (222)
T cd08871 127 FNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS--LPKWVVNKATTKLAPKVMKKLHKAALKYP 204 (222)
T ss_pred EeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC--cCHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11111211 110 11 2245666788898778899999988888764 3344444 334445677777777665544
No 58
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.69 E-value=0.86 Score=36.51 Aligned_cols=114 Identities=10% Similarity=-0.079 Sum_probs=68.4
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCC-CcccEEEEEeec--CCc-eeeeEEEEEE-eecCC-
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLWNFAD--GGD-FKHSKQRIDA-LDKDN- 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~~~~~--g~~-~~~~kErl~~-~D~~~- 78 (159)
.+..+..+++|++++++++.|..+ .++|.++ ..++++++--+ .-- |..+.-.+ ..+ -..+.-+=.. ..+.+
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 577888999999999999999999 9999986 77888887432 212 66655333 111 1122211110 12122
Q ss_pred -CeEEEEEEec-CCCc-c---ceeE-EEEEEEEeecCCCcceEEEEEEEEE
Q 031459 79 -LTSKYTVYEG-EGAA-A---IFEK-AVYDVKFEASGNGGSICKVAAECHI 122 (159)
Q Consensus 79 -~~~~y~i~eg-~~~~-~---~~~~-y~~t~~v~~~~~g~s~v~W~~~ye~ 122 (159)
..+.-.-+.. -+++ . .... ..|. .+.|.++++|.|.+....+|
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2222222222 1111 1 1334 4445 78898888999999998888
No 59
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.52 E-value=0.84 Score=35.35 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=84.8
Q ss_pred EEEEEEEe-cCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCccc-EEEEEeec---CCceeeeEEEEEEee-cCC
Q 031459 5 RFEKEAPA-AVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGT-IKLWNFAD---GGDFKHSKQRIDALD-KDN 78 (159)
Q Consensus 5 ~~~~e~~i-~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~-vR~~~~~~---g~~~~~~kErl~~~D-~~~ 78 (159)
.+..+..+ ++|++.+++++.|... -++|.+. +.+.++++-++..|+ |-.+.+.. -.+-.++--|..-.| +..
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYWDDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRS 128 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHcChhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCE
Confidence 46777788 6799999999999887 8899986 667777765432121 22222221 111123333322233 333
Q ss_pred CeEEEEEEecCCCc----cceeEEEEEEEEeec--CCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 79 LTSKYTVYEGEGAA----AIFEKAVYDVKFEAS--GNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 79 ~~~~y~i~eg~~~~----~~~~~y~~t~~v~~~--~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
..+....+.-+..+ ..+..|.+.+.+.|. ++++|.+.++.--.|.+. .|.-..+ .+..+.-.++++|...+
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~--IP~wlvN~~~~~~~~~~l~~l~~a~ 206 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG--IPRELAKLAVKRGMPGFLKKLENAL 206 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC--CCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33322222221111 136788999999997 667788888776666433 4445544 55556678888888766
Q ss_pred h
Q 031459 152 L 152 (159)
Q Consensus 152 ~ 152 (159)
.
T Consensus 207 ~ 207 (209)
T cd08870 207 R 207 (209)
T ss_pred h
Confidence 4
No 60
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=94.42 E-value=1.8 Score=33.52 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=84.8
Q ss_pred EEEEEEEe-cCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcc-cEEEEEeecC---CceeeeEEEEEEeecCCC
Q 031459 5 RFEKEAPA-AVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVG-TIKLWNFADG---GDFKHSKQRIDALDKDNL 79 (159)
Q Consensus 5 ~~~~e~~i-~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G-~vR~~~~~~g---~~~~~~kErl~~~D~~~~ 79 (159)
.+..+..+ ++|++.+.+++.|... -++|.+. +.+.++++.+...+ -+-.+.+..- ..-..+--|....|+++.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 45666666 9999999999999987 8999986 77888887542212 2223333211 111244445445676654
Q ss_pred eEEEE--EEec-CCCc----cceeEEEEEEEEeecC---CCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHH
Q 031459 80 TSKYT--VYEG-EGAA----AIFEKAVYDVKFEASG---NGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVE 148 (159)
Q Consensus 80 ~~~y~--i~eg-~~~~----~~~~~y~~t~~v~~~~---~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie 148 (159)
.+.-. -++- ..+. ....+|.+.+.+.|.. +++|.+.++.--+|. ...|.-..+ .+....-.+++.|.
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHHH
Confidence 42111 1221 1010 1367788999999873 457877765544333 334444444 45555677888877
Q ss_pred Hhhhh
Q 031459 149 AHLLA 153 (159)
Q Consensus 149 ~~l~~ 153 (159)
..+++
T Consensus 202 ~a~~~ 206 (207)
T cd08911 202 NAALK 206 (207)
T ss_pred HHHhc
Confidence 76653
No 61
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=93.97 E-value=2.2 Score=32.80 Aligned_cols=142 Identities=8% Similarity=0.018 Sum_probs=79.3
Q ss_pred EEEEEEecCCHHHHHHHhhh--cCCccccccccceeeEEEEcCCCCcccEEEEEeec-C-C---ceeee-EEEEEEeecC
Q 031459 6 FEKEAPAAVAPSRMFKAFVD--SHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD-G-G---DFKHS-KQRIDALDKD 77 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d--~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~-g-~---~~~~~-kErl~~~D~~ 77 (159)
+..+..|+++++++.+.+.| ... .++|-+. +.++++++.-+..=.+-...++. + + +-..+ .+.....++.
T Consensus 48 ~k~~~~i~~~~~~v~~~l~d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 48 YRAEGIVDALPEKVIDVIIPPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEcCCHHHHHHHHHhcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 67889999999999999997 666 6899986 88999887643111122222211 1 1 11111 1211223333
Q ss_pred CCeEEEEEEecCCCc--cc---eeEEEEEEEEeecC--CCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 031459 78 NLTSKYTVYEGEGAA--AI---FEKAVYDVKFEASG--NGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEA 149 (159)
Q Consensus 78 ~~~~~y~i~eg~~~~--~~---~~~y~~t~~v~~~~--~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~ 149 (159)
...+...-++-+..+ .+ ...+.+-+-+.|.+ +++|.++|.+..+|.+..| .-..+ .+.+.....++.|..
T Consensus 126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP--~~lvn~~~~~~~~~~~~~lr~ 203 (206)
T cd08867 126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIP--QSLVESAMPSNLVNFYTDLVK 203 (206)
T ss_pred eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCc--HHHHHhhhhhhHHHHHHHHHH
Confidence 233333333222111 11 12233444566644 3579999999999986433 33433 555666778888877
Q ss_pred hh
Q 031459 150 HL 151 (159)
Q Consensus 150 ~l 151 (159)
||
T Consensus 204 ~~ 205 (206)
T cd08867 204 GV 205 (206)
T ss_pred hc
Confidence 75
No 62
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.53 E-value=3.1 Score=33.08 Aligned_cols=144 Identities=6% Similarity=-0.005 Sum_probs=80.1
Q ss_pred EEEEEEEec-CCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEee---cCCceeee-EEEEEEeecCC-
Q 031459 5 RFEKEAPAA-VAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFA---DGGDFKHS-KQRIDALDKDN- 78 (159)
Q Consensus 5 ~~~~e~~i~-apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~---~g~~~~~~-kErl~~~D~~~- 78 (159)
.+..+..++ ++++++.+++.|... -++|... +.+.++++-...--.|-...+. +-..-..+ .-++...|+..
T Consensus 53 ~~Ka~~~v~~vt~~~~~~~l~D~~~-r~~Wd~~-~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~ 130 (235)
T cd08872 53 PLKATHAVKGVTGHEVCHYFFDPDV-RMDWETT-LENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEE 130 (235)
T ss_pred eEEEEEEECCCCHHHHHHHHhChhh-HHHHHhh-hheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccc
Confidence 467778888 999999999999988 8899985 7888877643210112222222 11111111 11222223321
Q ss_pred -------CeEEEEEEecCCCccceeEEEEE-----------------EEEeecCCCcceEEEEEEEEEcCCCCCChHHHH
Q 031459 79 -------LTSKYTVYEGEGAAAIFEKAVYD-----------------VKFEASGNGGSICKVAAECHIKGDQELKEELMK 134 (159)
Q Consensus 79 -------~~~~y~i~eg~~~~~~~~~y~~t-----------------~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~ 134 (159)
-.+..++.-...+. .-...++. +.++| ++++|.+.+....+|.+.. |.-.++
T Consensus 131 ~~~~~~~vii~~Sv~h~~~P~-~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~i--P~wvvn 206 (235)
T cd08872 131 PNAHDTWIVCNFSVDHDSAPL-NNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWA--PASVLR 206 (235)
T ss_pred ccCCCeEEEEEecccCccCCC-CCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCc--cHHHHH
Confidence 22333332222221 11222222 22344 3567998888888877543 333443
Q ss_pred -HHHHHHHHHHHHHHHhhhhC
Q 031459 135 -DAEEKATALYNIVEAHLLAN 154 (159)
Q Consensus 135 -~~~~~~~~~~k~ie~~l~~~ 154 (159)
.++..+-++++.+.+|+..+
T Consensus 207 ~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 207 AVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred HHHHhhchHHHHHHHHHHHHh
Confidence 56666789999999999875
No 63
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=93.44 E-value=2.6 Score=31.93 Aligned_cols=145 Identities=12% Similarity=-0.024 Sum_probs=84.0
Q ss_pred EEEEEEEecCCHHHHH-HHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecC-Cc---eeeeEEEEEEe-ecCC
Q 031459 5 RFEKEAPAAVAPSRMF-KAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG-GD---FKHSKQRIDAL-DKDN 78 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw-~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g-~~---~~~~kErl~~~-D~~~ 78 (159)
.+..+..++++++++. .++.|... .++|.+. +.++++++-...-..|..+....- ++ -..+--|-... ++..
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~ 123 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGS 123 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhcccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCc
Confidence 4678889999999855 67778887 8999986 778887764311134555444321 12 11222221112 2333
Q ss_pred CeEEEEEEecCCCc--c---ceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhhh
Q 031459 79 LTSKYTVYEGEGAA--A---IFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHLL 152 (159)
Q Consensus 79 ~~~~y~i~eg~~~~--~---~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l~ 152 (159)
..+..+-++.+-.+ . ....+.+-+.+.|.+++.|.++|....++.+.. |.-.++ .+......+++.+.++|.
T Consensus 124 ~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~i--P~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 124 YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWL--PHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred EEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCc--cceeehhhhhhhHHHHHHHHHHHHH
Confidence 33443333322110 0 134677888999988888999999998887643 223333 344455666776766654
Q ss_pred h
Q 031459 153 A 153 (159)
Q Consensus 153 ~ 153 (159)
.
T Consensus 202 ~ 202 (206)
T smart00234 202 K 202 (206)
T ss_pred H
Confidence 3
No 64
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=90.61 E-value=6.4 Score=30.20 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=68.7
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeec--CC-ceeeeEEEEEEeecCCC--e
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFAD--GG-DFKHSKQRIDALDKDNL--T 80 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~--g~-~~~~~kErl~~~D~~~~--~ 80 (159)
+..+..|++++++++..+-|. -++|.+. +.++++++--+.-=.|-...+.. .. +-..+--|....+.++. .
T Consensus 46 ~K~~~~v~a~~~~v~~~l~d~---r~~Wd~~-~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~ 121 (197)
T cd08869 46 WRASTEVEAPPEEVLQRILRE---RHLWDDD-LLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACV 121 (197)
T ss_pred EEEEEEeCCCHHHHHHHHHHH---Hhccchh-hheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEE
Confidence 578999999999999988763 3789986 77888876432101122222221 11 11233333333333332 3
Q ss_pred EEEEEEec--CCCcc--ceeEEEEEEEEeecCCCcceEEEEEEEEEcCCC
Q 031459 81 SKYTVYEG--EGAAA--IFEKAVYDVKFEASGNGGSICKVAAECHIKGDQ 126 (159)
Q Consensus 81 ~~y~i~eg--~~~~~--~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~ 126 (159)
+..+-++- .++.. ....+.+-+.++|.++++|.++|.+..+|.+..
T Consensus 122 i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~i 171 (197)
T cd08869 122 LVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRS 171 (197)
T ss_pred EEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCC
Confidence 33333321 11110 134566788899988889999999999998653
No 65
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=90.59 E-value=6.7 Score=30.40 Aligned_cols=141 Identities=13% Similarity=0.088 Sum_probs=80.1
Q ss_pred EEEEEEEec-CCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecC---Cceeee--EEEEEEeecCC
Q 031459 5 RFEKEAPAA-VAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADG---GDFKHS--KQRIDALDKDN 78 (159)
Q Consensus 5 ~~~~e~~i~-apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g---~~~~~~--kErl~~~D~~~ 78 (159)
.+..+..++ ++++.+.+++.|... -++|.+... ++.-.+.++. .|-.+.+..- ..-..+ +.+ ..+|...
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~~-r~~Wd~~~~-~~~~~~~~~~--~i~y~~~k~PwPvs~RD~V~~r~~-~~~~~~~ 124 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLEY-RKQWDQYVK-ELYEKECDGE--TVIYWEVKYPFPLSNRDYVYIRQR-RDLDVEG 124 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHHH-HHHHHHHHH-hheeecCCCC--EEEEEEEEcCCCCCCceEEEEEEe-ccccCCC
Confidence 466778888 799999999999888 889998744 3321222221 2334433211 111122 222 2344444
Q ss_pred CeEEE---EEEecCC-Cc----cceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 031459 79 LTSKY---TVYEGEG-AA----AIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEA 149 (159)
Q Consensus 79 ~~~~y---~i~eg~~-~~----~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~ 149 (159)
..+.. +..+-+- +. .....|.+.+.++|.++++|.+.+..-.+|.+. .|.-..+ .+......++++|..
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~--IP~wlvN~~~~~~~~~~l~~l~k 202 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM--IPSWLINWAAKNGVPNFLKDMQK 202 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc--chHHHHHHHHHHhhHHHHHHHHH
Confidence 32211 1111110 00 136788999999998777898888877776543 3334444 445566777777776
Q ss_pred hhh
Q 031459 150 HLL 152 (159)
Q Consensus 150 ~l~ 152 (159)
.+.
T Consensus 203 a~~ 205 (207)
T cd08910 203 ACQ 205 (207)
T ss_pred HHh
Confidence 554
No 66
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=86.56 E-value=14 Score=28.91 Aligned_cols=119 Identities=8% Similarity=0.025 Sum_probs=69.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCC-CcccEEEE-Eee-cCCceeeeEEEEEEeecCCCe
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDG-GVGTIKLW-NFA-DGGDFKHSKQRIDALDKDNLT 80 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g-~~G~vR~~-~~~-~g~~~~~~kErl~~~D~~~~~ 80 (159)
..+..+++|+++++++..++-|- -++|.+. +.+.++++--+ .---+... ... +...-..+.-|.-..|..+..
T Consensus 52 ~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~ 127 (204)
T cd08908 52 RLWRTTIEVPAAPEEILKRLLKE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGA 127 (204)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCe
Confidence 34788999999999999999754 4688886 55666666432 11111111 111 111112334333333444444
Q ss_pred EEEEEE--ecC-CCc--cceeEEEEEEEEeecCCCcceEEEEEEEEEcCCC
Q 031459 81 SKYTVY--EGE-GAA--AIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQ 126 (159)
Q Consensus 81 ~~y~i~--eg~-~~~--~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~ 126 (159)
+..... +-+ .+. .....+.+.+.++|.++|+|.++..+..+|.+..
T Consensus 128 ~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~i 178 (204)
T cd08908 128 CALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHM 178 (204)
T ss_pred EEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCC
Confidence 433332 111 111 1244567788899998889999999999987654
No 67
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=83.87 E-value=5.6 Score=31.40 Aligned_cols=104 Identities=14% Similarity=0.187 Sum_probs=66.2
Q ss_pred EEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC-CCcccEEEEE--eecCCceeeeEEEEEEeecCCCeEEEEE
Q 031459 9 EAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWN--FADGGDFKHSKQRIDALDKDNLTSKYTV 85 (159)
Q Consensus 9 e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~--~~~g~~~~~~kErl~~~D~~~~~~~y~i 85 (159)
..-|..+++++|++++|.+. ..+..| .-+..+++.-+ ++ +.+-.++ |++=. +...-+++ .++..++.+- .
T Consensus 73 rrligysp~~my~vVS~V~~-Y~~FVP-wC~kS~V~~~~P~~-~~kA~LeVGFk~l~--E~y~S~Vt-~~~p~l~kt~-~ 145 (227)
T KOG3177|consen 73 RRLIGYSPSEMYSVVSNVSE-YHEFVP-WCKKSDVTSRRPSG-PLKADLEVGFKPLD--ERYTSNVT-CVKPHLTKTV-C 145 (227)
T ss_pred HhhhCCCHHHHHHHHHhHHH-hhcccc-ceeccceeecCCCC-CceeeEEecCcccc--hhheeeeE-EecccceEEe-e
Confidence 34578899999999997776 666666 45566655433 22 2333333 33211 23444544 5566555432 3
Q ss_pred EecCCCccceeEEEEEEEEeecC--CCcceEEEEEEEEEc
Q 031459 86 YEGEGAAAIFEKAVYDVKFEASG--NGGSICKVAAECHIK 123 (159)
Q Consensus 86 ~eg~~~~~~~~~y~~t~~v~~~~--~g~s~v~W~~~ye~~ 123 (159)
-+|. .+......|+|.|+. .+.|++...++||-.
T Consensus 146 ~d~r----LF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~ 181 (227)
T KOG3177|consen 146 ADGR----LFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK 181 (227)
T ss_pred cccc----HHHhhhheeeeccCCCCCCeEEEEEEEEEEeh
Confidence 3443 466777899999988 578999999999975
No 68
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=69.67 E-value=44 Score=24.96 Aligned_cols=146 Identities=10% Similarity=0.054 Sum_probs=87.7
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCC--ce---eeeEEEEEEe-ecC
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGG--DF---KHSKQRIDAL-DKD 77 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~--~~---~~~kErl~~~-D~~ 77 (159)
..+.....|+++++++...+.+-.. .|-+. +.++++++--..-..|..+.+.... +. ..+--|.... .+.
T Consensus 46 ~~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~ 121 (206)
T PF01852_consen 46 KMFKAEGVVPASPEQVVEDLLDDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG 121 (206)
T ss_dssp EEEEEEEEESSCHHHHHHHHHCGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred eEEEEEEEEcCChHHHHHHHHhhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence 4567889999999988877774332 78875 7788888742111456665554322 31 1221122222 344
Q ss_pred CCeEEEEEEecCCCc------cceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHh
Q 031459 78 NLTSKYTVYEGEGAA------AIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAH 150 (159)
Q Consensus 78 ~~~~~y~i~eg~~~~------~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~ 150 (159)
...+..+=++.+..+ .....+.+.+.+.|.+++.|.|.+...-++.+.. |.-..+ .+......+++.+-++
T Consensus 122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i--P~~~~n~~~~~~~~~~~~~~~~~ 199 (206)
T PF01852_consen 122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI--PSWLVNMVVKSQPPNFLKNLRKA 199 (206)
T ss_dssp EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC--hHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555444433221 1234566788899998888999998888876533 344444 3444566778888777
Q ss_pred hhhCC
Q 031459 151 LLANP 155 (159)
Q Consensus 151 l~~~~ 155 (159)
|..+.
T Consensus 200 ~~~~~ 204 (206)
T PF01852_consen 200 LKKQK 204 (206)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 77665
No 69
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=62.59 E-value=59 Score=23.86 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=30.9
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD 47 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~ 47 (159)
.++.++..+-+.+.+-.+++|+.-++|+++|. +++++ ++++
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p~-ik~v~-~~~~ 42 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFPP-IKSVK-VEEN 42 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHSTT-EEEEE--STT
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCCc-eEEEE-ecCC
Confidence 35678888899999999999999889999995 89998 4443
No 70
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=56.75 E-value=21 Score=29.00 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=28.2
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 116 VAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 116 W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
+.+.+++..+.....+..+++.+....+.+.+|+.+.++|+-|
T Consensus 239 ~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir~~PeQw 281 (290)
T PRK06628 239 FKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVKQNPAQW 281 (290)
T ss_pred EEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHcCchhh
Confidence 6666665322221122223455678899999999999999976
No 71
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=53.19 E-value=22 Score=29.14 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=28.8
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 115 KVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 115 ~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
.+.+.+++.-+.+..++.-.++.+....+.+.+|+.+.++|+-|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~PeQw 300 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYPGQW 300 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcChHhh
Confidence 37777765322211111112455678899999999999999976
No 72
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=47.56 E-value=1.3e+02 Score=23.31 Aligned_cols=139 Identities=9% Similarity=-0.004 Sum_probs=75.6
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcC-CCCcccEEEEEeec--CC---ceeeeEEEEE-EeecCC
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQG-DGGVGTIKLWNFAD--GG---DFKHSKQRID-ALDKDN 78 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG-~g~~G~vR~~~~~~--g~---~~~~~kErl~-~~D~~~ 78 (159)
+..+..|+++++++|+.+.+... -.+|-+. +..++++|- |... .|-+....+ ++ +...+-=|-. ..++..
T Consensus 48 ~k~egvi~~~~e~v~~~l~~~e~-r~~Wd~~-~~~~~iie~Id~~T-~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~ 124 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMYQPEH-RIKWDKS-LQVYKMLQRIDSDT-FICHTITQSFAMGSISPRDFVDLVHIKRYEGNM 124 (204)
T ss_pred EEEEEEecCCHHHHHHHHhccch-hhhhccc-ccceeeEEEeCCCc-EEEEEecccccCCcccCceEEEEEEEEEeCCCE
Confidence 57889999999999999997666 6789984 888888873 2211 222222221 11 1112221111 124444
Q ss_pred CeEEEEEEecCCCc--cc---eeEEEEEEEEeecCC--CcceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHH
Q 031459 79 LTSKYTVYEGEGAA--AI---FEKAVYDVKFEASGN--GGSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEA 149 (159)
Q Consensus 79 ~~~~y~i~eg~~~~--~~---~~~y~~t~~v~~~~~--g~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~ 149 (159)
..+....++-+-.+ .. -.++.+-+-+.|.++ ++|.+.|-+..++.+. .|...++ .+......++.++..
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~--lP~~vv~~~~~~~~~~f~~~~~~ 201 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN--LSRSVIEKTMPTNLVNLILDAKD 201 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC--CCHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444433211 01 223334556677655 3799999999888753 3334433 333444555555443
No 73
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=46.77 E-value=70 Score=21.52 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=33.7
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCC
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANP 155 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 155 (159)
.|++++-+ |.+-.+.|-++... +++.+---+++-.......|.+.++ ......+.++...||..||
T Consensus 14 G~~IL~rN-----~r~~~GEIDiIa~~-~~~lvfVEVK~R~~~~~~~~~~~v~--~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 14 GYRILERN-----WRCRRGEIDIIARD-GDTLVFVEVKTRSSSSFGSPEEAVD--PRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp T-EEEEEE-----EEETTEEEEEEEEE-TTEEEEEEEEE----------------HHHHHHHHHHHHHHHHH-G
T ss_pred CCEEeeee-----ecCCCCcEeEEEEE-cccEEEEEEEEeecccccCHHHHCh--HHHHHHHHHHHHHHHHHCC
Confidence 36666654 66667888888875 4455555454444333333333332 2345678888889999988
No 74
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=45.30 E-value=37 Score=27.45 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=27.3
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 115 KVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 115 ~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
.|.+.|++......++ +..+....+.+.+|+++.++|+-|
T Consensus 238 ~y~i~~~~~~~~~~~~----~~~~~t~~~~~~lE~~Ir~~PeQw 277 (295)
T PRK05645 238 GYKVILEAAPEDMYST----DVEVSAAAMSKVVERYVRAYPSQY 277 (295)
T ss_pred eEEEEEecCCcCCCCC----CHHHHHHHHHHHHHHHHHcCcHHh
Confidence 4777776542221222 234578899999999999999966
No 75
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=44.92 E-value=38 Score=27.62 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 116 VAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 116 W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
|.+.+++....+.+ + +..+....+.+.+|+++.++||-|
T Consensus 249 ~~i~~~~~~~~~~~-~---~~~~~t~~~n~~lE~~Ir~~PeQw 287 (305)
T TIGR02208 249 FELTVRPAMATELS-V---DPEQEARAMNKEVEQFILPYPEQY 287 (305)
T ss_pred EEEEEecCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCchHH
Confidence 77777653222222 2 234578899999999999999966
No 76
>cd00222 CollagenBindB Collagen-binding protein B domain, mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by the repetitive B region; the B region has one to four 23 kDa repeat units (B1-B4). The B repeat units have been suggested to serve as a `stalk' that projects the A region from the bacterial surface and thus facilitate bacterial adherence to collagen; each B repeat unit has two domains (D1 and D2) placed side-by-side; D1 and D2 have similar secondary structure and exhibit a unique inverse IgG-like domain fold.
Probab=44.46 E-value=39 Score=26.04 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=42.6
Q ss_pred ecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEEecCCC
Q 031459 12 AAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGA 91 (159)
Q Consensus 12 i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~ 91 (159)
++.+..|+|. |-++ -+..-|..| .+.+.. +|.. ....+++..+..-.+.-+-|-..|+....+.|++-|-++.
T Consensus 3 ~~i~v~K~W~---d~~n-~~~~RP~sI-~v~L~~-ng~~-~~~~~~l~~~n~W~~tf~~Lpkyd~~G~~i~YtV~E~~V~ 75 (187)
T cd00222 3 VNLSGTKIWD---DYDD-KFKKRPAKI-SVQLLA-NGEK-YVKIVTVTKDNNWKYEFKDLPKYDNEGKKINYTVVEVQVP 75 (187)
T ss_pred EEEEEEEEEC---CCCC-CCCCCCCEE-EEEEEe-CCee-eeeEEEecCCCCeEEEEcCCCcccCCCCEEEEEEEeecCC
Confidence 4555667776 3333 344566544 566663 3322 3445555554432233345666777888999999998765
No 77
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=41.60 E-value=55 Score=26.46 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 135 DAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 135 ~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
+..+....+.+.+|+++.++|+-|
T Consensus 258 ~~~~~~~~~~~~lE~~Ir~~P~Qw 281 (298)
T PRK08419 258 DILEATQAQASACEEMIRKKPDEY 281 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhh
Confidence 456778999999999999999976
No 78
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=39.78 E-value=1.8e+02 Score=22.74 Aligned_cols=141 Identities=9% Similarity=0.036 Sum_probs=75.9
Q ss_pred EEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCCCCcccE-EEEEeecCCc----eeeeE-EEEEEeecCCC
Q 031459 6 FEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGDGGVGTI-KLWNFADGGD----FKHSK-QRIDALDKDNL 79 (159)
Q Consensus 6 ~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~g~~G~v-R~~~~~~g~~----~~~~k-Erl~~~D~~~~ 79 (159)
+..|..|+..++++|..+.+... -.+|=|. +++++++|-=+.==+| |.++.+..+. -..+- -+.....+.-.
T Consensus 49 ~R~Egvv~~~~~ev~d~v~~~~~-r~~Wd~~-v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~ 126 (202)
T cd08902 49 YKAQGVVEDVYNRIVDHIRPGPY-RLDWDSL-MTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLL 126 (202)
T ss_pred EEEEEEecCCHHHHHHHHhcccc-hhcccch-hhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeE
Confidence 46778889999999999987654 6799986 9999999842110123 3444443321 01111 11111223323
Q ss_pred eEEEEEEecCCCccce---eEEEEEEEEeecCCC--cceEEEEEEEEEcCCCCCChHHHH-HHHHHHHHHHHHHHHhh
Q 031459 80 TSKYTVYEGEGAAAIF---EKAVYDVKFEASGNG--GSICKVAAECHIKGDQELKEELMK-DAEEKATALYNIVEAHL 151 (159)
Q Consensus 80 ~~~y~i~eg~~~~~~~---~~y~~t~~v~~~~~g--~s~v~W~~~ye~~~~~~~~~~~~~-~~~~~~~~~~k~ie~~l 151 (159)
++.-++.-....+ +| .++-+-+-+.|..++ .|.+.|-+..++.+. .|...++ .+-.....++..|..+|
T Consensus 127 s~gvs~~~~~~pp-g~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~--LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 127 SCGVSIEYEEARP-NFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGM--LPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEeeecCCCCCC-CeEeecccccEEEEEECCCCCCceEEEEEEEecCCCC--ccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3333332222221 11 122233456676654 789999999887753 4455544 33444455555555544
No 79
>PRK14681 hypothetical protein; Provisional
Probab=39.51 E-value=1e+02 Score=23.08 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=44.2
Q ss_pred EEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 031459 81 SKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156 (159)
Q Consensus 81 ~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 156 (159)
-.|+|++-+ |..-.+.|-++...+++++|--.+.+-.......|.+.+. ......+.++-+.||..|+.
T Consensus 60 ~Gy~IL~rN-----~R~~~GEIDIIa~d~~~~LVFVEVKtR~~~~~g~p~eaVt--~~Kqrrl~raA~~yL~~~~~ 128 (158)
T PRK14681 60 HGWTTLSRN-----WHCRYGELDIVALNPEYTIVFVEVKTRRSMHYGYPQEAVT--AAKQHNLRKAACDWLLERRN 128 (158)
T ss_pred CCCEEEEEE-----EeCCCCcEEEEEEcCCceEEEEEEEeccCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 457777764 4455678888887544577777777765444333334332 23456788888999988763
No 80
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=37.43 E-value=70 Score=19.28 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhCC
Q 031459 132 LMKDAEEKATALYNIVEAHLLANP 155 (159)
Q Consensus 132 ~~~~~~~~~~~~~k~ie~~l~~~~ 155 (159)
.++..++.+...++.+|.+|..++
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~ 26 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGP 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455677888999999999999887
No 81
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.37 E-value=57 Score=26.61 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=26.9
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 115 KVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 115 ~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
.|.+.+++....... + +..+....+.+.+|+++.++|+-|
T Consensus 251 ~~~i~~~~~~~~~~~-~---d~~~~t~~~n~~lE~~Ir~~PeQw 290 (309)
T PRK06860 251 GYELIILPPEDSPPL-D---DAEATAAWMNKVVEKCILMAPEQY 290 (309)
T ss_pred eEEEEEecCCCCCCC-C---CHHHHHHHHHHHHHHHHHcCchHH
Confidence 377777664322222 2 234567888899999999999966
No 82
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=37.35 E-value=56 Score=26.68 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhhhCCCCC
Q 031459 137 EEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 137 ~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
.+....+.+.+|+++.++||-|
T Consensus 257 ~~~~~~~n~~lE~~Ir~~PeQw 278 (305)
T PRK08734 257 LRAATALNAGIERIARRDPAQY 278 (305)
T ss_pred HHHHHHHHHHHHHHHHcCcHHh
Confidence 4577899999999999999976
No 83
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=36.79 E-value=61 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=27.4
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 115 KVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 115 ~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
.|.+.+++..... +++ ++.+....+.+.+|++..++|+-|
T Consensus 248 ~y~i~i~~~~~~~-~~~---~i~~~t~~~~~~lE~~Ir~~P~Qw 287 (306)
T PRK08733 248 RYVLKIAPPLADF-PSD---DVIADTTRVNAAIEDMVREAPDQY 287 (306)
T ss_pred eEEEEEECCCCCC-CCC---CHHHHHHHHHHHHHHHHHcCcHhh
Confidence 3777776532222 222 234678899999999999999966
No 84
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=34.70 E-value=61 Score=26.12 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 116 VAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 116 W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
+.+.+.+.....+ ++ ++.+....+.+.+|+++.++|+-|
T Consensus 233 ~~i~i~~~~~~~~-~~---~~~~~t~~~~~~lE~~Ir~~P~QW 271 (289)
T PRK08706 233 VTLHFYPAWDSFP-SE---DAQADAQRMNRFIEERVREHPEQY 271 (289)
T ss_pred EEEEEecCCCCCC-CC---CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 6666665322212 22 234678999999999999999865
No 85
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=33.53 E-value=73 Score=25.85 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=26.6
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 116 VAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 116 W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
+.+.+++..... +++ +..+....+.+.+|+++.++|+-|
T Consensus 246 ~~i~~~~~~~~~-~~~---~~~~~t~~~~~~lE~~Ir~~P~QW 284 (303)
T TIGR02207 246 YRLKIDPPLDDF-PGD---DEIAAAARMNKIVEKMIMRAPEQY 284 (303)
T ss_pred EEEEEeCCCCCC-CCC---CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 666776532221 222 234578899999999999999866
No 86
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=33.28 E-value=73 Score=26.09 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=27.3
Q ss_pred EEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 115 KVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 115 ~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
.|.+.+++.....+.. +..+....+.+.+|+++.++|+-|
T Consensus 257 ~~~i~~~~~~~~~~~~----d~~~~t~~~~~~lE~~Ir~~PeQw 296 (314)
T PRK08943 257 RLDIEIRPPMDDLLSA----DDETIARRMNEEVEQFVGPHPEQY 296 (314)
T ss_pred eEEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHcCcHHH
Confidence 3777776643222222 234577899999999999999866
No 87
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=31.80 E-value=32 Score=27.89 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhCCCC
Q 031459 141 TALYNIVEAHLLANPDL 157 (159)
Q Consensus 141 ~~~~k~ie~~l~~~~~~ 157 (159)
-+++++|+.||.+||.+
T Consensus 220 D~LYrAID~YLk~Hp~l 236 (258)
T PF03000_consen 220 DGLYRAIDIYLKAHPGL 236 (258)
T ss_pred chHHHHHHHHHHHcccC
Confidence 48999999999999974
No 88
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=31.76 E-value=93 Score=24.92 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=28.6
Q ss_pred EEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 114 CKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 114 v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
..|.+.+++.-..+..+ +..+....+.+.+|+.+.++|+-|
T Consensus 246 ~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~lE~~Ir~~P~QW 286 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSE----DIEELTQRYNDRLEEWIREHPEQW 286 (295)
T ss_pred CEEEEEEeecccCCccc----hHHHHHHHHHHHHHHHHHcChHhh
Confidence 45777777643222222 345678999999999999999865
No 89
>PRK14680 hypothetical protein; Provisional
Probab=31.48 E-value=1.6e+02 Score=21.43 Aligned_cols=67 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 156 (159)
.|+|++-+ |..-.+.|-++... ++++|=-.+.+-.......|.+.++ ......+.++-+.||..|+.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVKtR~~~~~g~p~eaV~--~~K~~ri~raA~~yL~~~~~ 90 (134)
T PRK14680 24 GHRILARN-----WRHGGLELDIVCED-GDTIVFVEVKTRAAHGLTSPTDALT--HSKRHRLIRAARAWLAAHDA 90 (134)
T ss_pred CCEEEEee-----cCCCCCeEEEEEEe-CCEEEEEEEEecCCCCCCChHHhCC--HHHHHHHHHHHHHHHHhCCC
Confidence 57777765 44446788888764 4577766666655433333444332 23456788888999988773
No 90
>PRK14688 hypothetical protein; Provisional
Probab=30.55 E-value=1.5e+02 Score=21.06 Aligned_cols=66 Identities=11% Similarity=0.130 Sum_probs=40.7
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCC
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANP 155 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 155 (159)
.|+|++-+ |.+-.+.|-++... |+++|=--+.+-.......|.+.+. ......+.++-+.||..|+
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lVFVEVK~R~~~~~g~~~eaV~--~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 24 GYSIIQTN-----CRLPEGEIDIVGQD-GEYLVFIEVRTKRRLGYGLPAESVT--PRKKAHLMASAESYIQKHR 89 (121)
T ss_pred CCEEEEEE-----eeCCCCcEeEEEee-CCEEEEEEEEecCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 46776664 44556788888764 4577666666654333333333322 2345678888889998886
No 91
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=29.11 E-value=88 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=25.5
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 116 VAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 116 W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
|.+.+++.-...+.++ . .+....+.+.+|+++.++|+-|
T Consensus 250 ~~i~~~~~~~~~~~~~-~---~~~~~~~~~~lE~~Ir~~P~QW 288 (310)
T PRK05646 250 YRLVIHPPLEDFPGES-E---EADCLRINQWVERVVRECPEQY 288 (310)
T ss_pred EEEEEeCCCcCCCCCC-H---HHHHHHHHHHHHHHHHcCcHHH
Confidence 7777765322222222 2 2346899999999999999865
No 92
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=28.71 E-value=1.1e+02 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCC
Q 031459 136 AEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 136 ~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
..+.+..+.+.||+.+.++|+.|
T Consensus 162 ~~~~~~~~~~~lE~~i~~~P~qw 184 (192)
T cd07984 162 VEEDTQRLNDALEAAIREHPEQW 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHhCchhh
Confidence 45678999999999999999876
No 93
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=28.19 E-value=1e+02 Score=23.17 Aligned_cols=60 Identities=17% Similarity=0.364 Sum_probs=31.0
Q ss_pred ccEEEEEeecCCceeeeEEEEEEeecCCCeEEEEEEecCCCccceeEEEEEEEEeecCCCcceEEEE-EEEEEcC
Q 031459 51 GTIKLWNFADGGDFKHSKQRIDALDKDNLTSKYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVA-AECHIKG 124 (159)
Q Consensus 51 G~vR~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~-~~ye~~~ 124 (159)
|..+.|...-|-+. .-.++..++--+.|-+.|.-+||.++...| .+|+++.|- -+|++.+
T Consensus 50 GVL~SWAvPkGPs~-dp~~kRLAv~~EDHpl~Y~~FEG~IP~g~Y-------------GaG~V~iWD~Gty~~~~ 110 (156)
T TIGR02777 50 GVLKSWAVPKGPSL-DPADKRLAVHVEDHPLDYADFEGTIPKGEY-------------GAGTVIVWDRGTWEPEG 110 (156)
T ss_pred CeEEEeEcCcCCCC-CcccceeeeEccCccchhccccccccCCcc-------------CCccEEEEeCceEEeCC
Confidence 56777777655321 122333345555555555555555432111 247888885 4566653
No 94
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.15 E-value=83 Score=25.52 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=27.0
Q ss_pred EEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCCCC
Q 031459 116 VAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 116 W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~~~ 158 (159)
+.+.+.+.-.. +++ ++..+....+.+.+|+++.++|+-|
T Consensus 236 y~v~~~~~~~~-~~~---~~~~~~t~~~~~~lE~~Ir~~PeQW 274 (298)
T PRK07920 236 WGFRVHPPLDV-PSA---EDVAAMTQALADAFAANIAAHPEDW 274 (298)
T ss_pred EEEEEeCCCCC-Cch---hHHHHHHHHHHHHHHHHHHhChHHH
Confidence 66666643221 111 2455788999999999999999865
No 95
>PRK12497 hypothetical protein; Reviewed
Probab=26.57 E-value=2.2e+02 Score=19.96 Aligned_cols=67 Identities=13% Similarity=0.155 Sum_probs=40.1
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 156 (159)
.|+|++-+ |..-.+.|-++... ++++|=-.+.+-.......|.+.+. ......+.++-+.||..+|.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~~eav~--~~K~~ri~~aA~~yL~~~~~ 90 (119)
T PRK12497 24 GLRILARN-----FRCRFGEIDLIARD-GDTLVFVEVKTRRSDRFGGAAEAVT--PRKQRRLRRAAQLWLARHPS 90 (119)
T ss_pred CCEEEcce-----ecCCCCcEeeeEEe-CCEEEEEEEEeccCCCCCCHHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46676654 33445678887764 4576666666654432223333332 22456788888999998864
No 96
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.22 E-value=2.3e+02 Score=23.63 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=51.8
Q ss_pred EEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEcCC-CCcccEEEEEeecCCceeeeEEEEEEeec-CCCeEE
Q 031459 5 RFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQGD-GGVGTIKLWNFADGGDFKHSKQRIDALDK-DNLTSK 82 (159)
Q Consensus 5 ~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~eG~-g~~G~vR~~~~~~g~~~~~~kErl~~~D~-~~~~~~ 82 (159)
.+..+.+++++++++++.|-+... +..|.- |...++++ | |. +.+-+|. .+- ++.++.+ ..-.+.
T Consensus 174 di~l~~tfn~~~~eLy~~fld~~r-v~~wt~----S~a~l~~~~~--g~---f~lf~Gn---Vtg-~~~~~e~~K~Iv~k 239 (301)
T KOG2936|consen 174 DISLSATFNCRVDELYEIFLDPER-VKAWTR----SPAELEADPG--GK---FSLFDGN---VTG-EFLELEKNKKIVMK 239 (301)
T ss_pred cceehhhcCCCHHHHHHHHhcHHH-HHHhcC----ChhhcccCCC--Cc---eEEeccc---cee-eeeeecCCCeEEEE
Confidence 356778899999999999998887 666663 22223443 4 32 3334442 222 3333333 333455
Q ss_pred EEEEecCCCccceeEEEEEEEEeecC-CCcceEEEEEE
Q 031459 83 YTVYEGEGAAAIFEKAVYDVKFEASG-NGGSICKVAAE 119 (159)
Q Consensus 83 y~i~eg~~~~~~~~~y~~t~~v~~~~-~g~s~v~W~~~ 119 (159)
+++-.= +. .+.+||+++... +|.|.++...+
T Consensus 240 Wrl~~W--p~----~~~atI~~~f~~~~~~t~l~~~~k 271 (301)
T KOG2936|consen 240 WRLKSW--PD----GHDATITLTFYESQGETKLQVKQK 271 (301)
T ss_pred EecccC--CC----CccceEEEEEecCCCceEEEEEec
Confidence 666332 21 245667666533 35566555443
No 97
>PRK14684 hypothetical protein; Provisional
Probab=24.80 E-value=2.5e+02 Score=19.94 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=41.0
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCCC
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANPD 156 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~~ 156 (159)
.|++++-+ |..-.+.|-++... |++.|=-.+.+-.......|.+.+. ...-..+.++-+.||..|+.
T Consensus 24 Gy~Il~rN-----~r~~~GEIDiIa~~-~~~lvFVEVK~R~~~~~g~~~eaV~--~~K~~rl~r~A~~yL~~~~~ 90 (120)
T PRK14684 24 GLSFITKN-----FRYKQGEIDLIMSD-QSMLVFIEVRYRRFSDFIHPVATVT--PLKQRRLIKTALHYLQKHRL 90 (120)
T ss_pred CCEEEEEE-----ecCCCCeEEEEEEe-CCEEEEEEEeEcCCCCCCChHHcCC--HHHHHHHHHHHHHHHHhCCC
Confidence 46676654 44556788888764 4677766666655433223333332 22456788888889988773
No 98
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.30 E-value=1.4e+02 Score=24.09 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhhhCCCCC
Q 031459 138 EKATALYNIVEAHLLANPDLY 158 (159)
Q Consensus 138 ~~~~~~~k~ie~~l~~~~~~~ 158 (159)
+....+.+.+|+++.++||-|
T Consensus 255 ~~t~~~n~~lE~~Ir~~PeQw 275 (293)
T PRK06946 255 LDARRMNAFLEEQIRLMPEQY 275 (293)
T ss_pred HHHHHHHHHHHHHHHcCcHhH
Confidence 468899999999999999976
No 99
>PRK14686 hypothetical protein; Provisional
Probab=22.85 E-value=2.7e+02 Score=19.57 Aligned_cols=66 Identities=17% Similarity=0.225 Sum_probs=39.2
Q ss_pred EEEEEecCCCccceeEEEEEEEEeecCCCcceEEEEEEEEEcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhCC
Q 031459 82 KYTVYEGEGAAAIFEKAVYDVKFEASGNGGSICKVAAECHIKGDQELKEELMKDAEEKATALYNIVEAHLLANP 155 (159)
Q Consensus 82 ~y~i~eg~~~~~~~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 155 (159)
.|++++-+ |.+-.+.|-++... |+++|=-.+.+-.......|.+.++ ......+.++-+.||..++
T Consensus 23 Gy~il~rN-----~r~~~GEIDlIa~~-~~~lvFVEVKtR~~~~~g~~~eaV~--~~K~~rl~~aA~~yl~~~~ 88 (119)
T PRK14686 23 GYTILERN-----YRFQKAEIDIIAQK-GNILVIVEVKTRSSSDFGNPQDFVK--PKKIQLLVKAVNHYIEDKD 88 (119)
T ss_pred CCEEEEEE-----ecCCCCcEEEEECc-CCEEEEEEEEecCCCCCCChhHcCC--HHHHHHHHHHHHHHHHhCC
Confidence 46777765 44556788888764 4577666666654333222333332 2345667777778887665
No 100
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=22.40 E-value=2.2e+02 Score=18.13 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=5.7
Q ss_pred CCeEEEEEEecC
Q 031459 78 NLTSKYTVYEGE 89 (159)
Q Consensus 78 ~~~~~y~i~eg~ 89 (159)
+..+.|++++|+
T Consensus 28 n~~i~y~i~~~~ 39 (93)
T PF00028_consen 28 NSQITYSILGGN 39 (93)
T ss_dssp TSSEEEEEEETT
T ss_pred CceEEEEEecCc
Confidence 444444444444
No 101
>PF08473 VGCC_alpha2: Neuronal voltage-dependent calcium channel alpha 2acd; InterPro: IPR013680 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. This eukaryotic domain has been found in the neuronal voltage-dependent calcium channel (VGCC) alpha 2a, 2c, and 2d subunits. It is also found in other calcium channel alpha-2/delta subunits to the N terminus of a Cache domain (IPR004010 from INTERPRO).
Probab=22.33 E-value=2.1e+02 Score=19.67 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.0
Q ss_pred eEEEEEEeecCCCeEEEEEEecC
Q 031459 67 SKQRIDALDKDNLTSKYTVYEGE 89 (159)
Q Consensus 67 ~kErl~~~D~~~~~~~y~i~eg~ 89 (159)
.-||- +|..+|+++|.-++|.
T Consensus 34 ~DeRY--Id~~~RtYtw~PI~gT 54 (94)
T PF08473_consen 34 QDERY--IDEVNRTYTWTPINGT 54 (94)
T ss_pred cccee--eeeeceeEEEeccCCC
Confidence 34554 6999999999999986
No 102
>PF11647 PMT_C: C-terminal region of Pasteurella multocida toxin residues 569-1285; InterPro: IPR020972 This entry represents the C-terminal domain of Pasteurella multocida toxin (PMT) which displays a Trojan horse-like shape with three domains, C1, C2 and C3. The C3 domain possesses the Cys-His-Asp catalytic triad. PMT is an enzyme toxin carrying the cysteine protease-like catalytic triad which functions on the cytoplasmic face of the plasma membrane of target cells []. This entry is also found in the Vibrio cholerae RTX toxin [], a bacterial toxin that self-process by a cysteine peptidase mechanism. These cysteine peptidases belong to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). ; PDB: 4ERR_A 2EC5_B 2EBH_X 2EBF_X.
Probab=21.65 E-value=1.2e+02 Score=19.36 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhhhhCCCC
Q 031459 139 KATALYNIVEAHLLANPDL 157 (159)
Q Consensus 139 ~~~~~~k~ie~~l~~~~~~ 157 (159)
....+-+.||.|++.+|+.
T Consensus 43 ~l~~L~~~ie~yl~~hp~s 61 (66)
T PF11647_consen 43 TLYELRKQIEHYLLDHPDS 61 (66)
T ss_dssp HHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhcCCcc
Confidence 3345668999999999973
No 103
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=20.75 E-value=4.1e+02 Score=20.65 Aligned_cols=117 Identities=11% Similarity=0.009 Sum_probs=63.0
Q ss_pred EEEEEEEEecCCHHHHHHHhhhcCCccccccccceeeEEEEc-CCCCcccEEEEEee---cCCceeeeEEEEEEeecCCC
Q 031459 4 IRFEKEAPAAVAPSRMFKAFVDSHNLLPKIAPQAFKSIDILQ-GDGGVGTIKLWNFA---DGGDFKHSKQRIDALDKDNL 79 (159)
Q Consensus 4 ~~~~~e~~i~apa~~vw~~~~d~~~~~p~~~P~~i~s~~~~e-G~g~~G~vR~~~~~---~g~~~~~~kErl~~~D~~~~ 79 (159)
..+..+++|++|++.|-..+-+ . -+.|-..+. +.++++ -++..- |-.-.+. +-..-..+.-|--..|....
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~--~-R~~WD~~~~-~~~~ie~ld~~td-i~~y~~~~~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLR--E-RHLWDEDFL-QWKVVETLDKQTE-VYQYVLNCMAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHh--h-HhhHHhhcc-eeEEEEEeCCCcE-EEEEEeecCCCCCCCEEEEEEEEEEeCCCC
Confidence 3467889999999999776654 3 467887644 444444 342111 1111111 11111234444333343333
Q ss_pred --eEEEEEEecC-CCccc---eeEEEEEEEEeecCCCcceEEEEEEEEEcCC
Q 031459 80 --TSKYTVYEGE-GAAAI---FEKAVYDVKFEASGNGGSICKVAAECHIKGD 125 (159)
Q Consensus 80 --~~~y~i~eg~-~~~~~---~~~y~~t~~v~~~~~g~s~v~W~~~ye~~~~ 125 (159)
.+.+.-++.. .+..+ ...+.+-+-++|.++|+|.+++.+..++.+-
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~ 178 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH 178 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC
Confidence 3333333332 11111 2344566778899888999999999998764
No 104
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=20.15 E-value=1.3e+02 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=21.3
Q ss_pred ChHHHHHHHHHH-HHHHHHHHHhhhhCC
Q 031459 129 KEELMKDAEEKA-TALYNIVEAHLLANP 155 (159)
Q Consensus 129 ~~~~~~~~~~~~-~~~~k~ie~~l~~~~ 155 (159)
+|.-++++++.+ .+++.+|++||.+|=
T Consensus 66 Sp~Tl~dmreyitdgL~NDlq~yL~~~y 93 (236)
T PF07067_consen 66 SPATLDDMREYITDGLANDLQEYLSKHY 93 (236)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445566778886 799999999999873
Done!