BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031460
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 33.1 bits (74), Expect = 0.065, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 27 DCVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDI 86
+ +Y V + TG GTD+ I + + A G + L+ W +N FE G+ +
Sbjct: 373 NAIYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKW------FHNDFEAGSKEQ 425
Query: 87 FSGRGPCLGGPVCALNLSSDGSGEHHG---WYCNYVEVTSTGVHTRCAQQQFTIEQWLAT 143
++ +G +G + + L SDG G G W+ N V + S+ T+ F +W+
Sbjct: 426 YTVQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISS---TQDRVYSFPCFRWVIK 481
Query: 144 D 144
D
Sbjct: 482 D 482
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 32.7 bits (73), Expect = 0.098, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFS 88
+Y V + TG GTD+ I + + A G + L+ W +N FE G+ + ++
Sbjct: 8 IYNVEVETGDREHAGTDATITIRITGAKGRTDYL-KLDKW------FHNDFEAGSKEQYT 60
Query: 89 GRGPCLGGPVCALNLSSDGSGEHHG---WYCNYVEVTSTGVHTRCAQQQFTIEQWLATD 144
+G +G + + L SDG G G W+ N V + S+ T+ F +W+ D
Sbjct: 61 VQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISS---TQDRVYSFPCFRWVIKD 115
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
pdb|3VF1|B Chain B, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests
A Mechanism For Ca-Regulation
Length = 698
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 30 YTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSG 89
Y + + TG + GTD+ + + L G +L+ + +N FE G D +
Sbjct: 22 YKITVETGDLRGAGTDASVSIKLTGKDGAETSAFSLDKY------FHNDFESGGTDTYDQ 75
Query: 90 RGPCLGGPVCALNLSSDGSGEHHGWYCNYV 119
G +G + + L +G G WY V
Sbjct: 76 SGVDVGE-IAMITLKENGFGLKSDWYIAKV 104
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFS 88
+Y V + TG GTD+ I + + A G R L+ G FE G+ + ++
Sbjct: 8 IYNVEVETGDREHAGTDATITIRITGAKG---RTDYLKLDKG-------SFEAGSKEQYT 57
Query: 89 GRGPCLGGPVCALNLSSDGSGEHHG---WYCNYVEVTSTGVHTRCAQQQFTIEQWLATD 144
+G +G + + L SDG G G W+ N V + S+ T+ F +W+ D
Sbjct: 58 VQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISS---TQDRVYSFPCFRWVIKD 112
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFS 88
+Y V + TG GTD+ I + + A G R L+ G FE G+ + ++
Sbjct: 8 IYNVEVETGDREHAGTDATITIRITGAKG---RTDYLKLDKG-------SFEAGSKEQYT 57
Query: 89 GRGPCLGGPVCALNLSSDGSGEHHG---WYCNYVEVTSTGVHTRCAQQQFTIEQWLATD 144
+G +G + + L SDG G G W+ N V + S+ T+ F +W+ D
Sbjct: 58 VQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISS---TQDRVYSFPCFRWVIKD 112
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFS 88
+Y V + TG GTD+ I + + A G R L+ G FE G+ + ++
Sbjct: 8 IYNVEVETGDREHAGTDATITIRITGAKG---RTDYLKLDKG-------SFEAGSKEQYT 57
Query: 89 GRGPCLGGPVCALNLSSDGSGEHHG---WYCNYVEVTSTGVHTRCAQQQFTIEQWLATD 144
+G +G + + L SDG G G W+ N V + S+ T+ F +W+ D
Sbjct: 58 VQGFDVGD-IQLIELHSDGGGYWSGDPDWFVNRVIIISS---TQDRVYSFPCFRWVIKD 112
>pdb|3V98|A Chain A, S663d Stable-5-Lox
pdb|3V98|B Chain B, S663d Stable-5-Lox
pdb|3V99|A Chain A, S663d Stable-5-Lox In Complex With Arachidonic Acid
pdb|3V99|B Chain B, S663d Stable-5-Lox In Complex With Arachidonic Acid
Length = 691
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 30 YTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSG 89
YTV + TGS GTD I ++L + G + L+ G FERG +D +
Sbjct: 24 YTVTVATGSQEHAGTDDYIYLSLVGSAGCSEK--------HLLDKG--SFERGAVDSYDV 73
Query: 90 RGPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTS 123
G + + + G + WY Y+ + +
Sbjct: 74 TVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKT 107
>pdb|3V92|B Chain B, S663a Stable-5-Lox
pdb|3V92|A Chain A, S663a Stable-5-Lox
Length = 691
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 30 YTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSG 89
YTV + TGS GTD I ++L + G + L+ G FERG +D +
Sbjct: 24 YTVTVATGSQEHAGTDDYIYLSLVGSAGCSEK--------HLLDKG--SFERGAVDSYDV 73
Query: 90 RGPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTS 123
G + + + G + WY Y+ + +
Sbjct: 74 TVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKT 107
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase
pdb|3O8Y|B Chain B, Stable-5-Lipoxygenase
Length = 691
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 30 YTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSG 89
YTV + TGS GTD I ++L + G + L+ G FERG +D +
Sbjct: 24 YTVTVATGSQEHAGTDDYIYLSLVGSAGCSEK--------HLLDKG--SFERGAVDSYDV 73
Query: 90 RGPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTS 123
G + + + G + WY Y+ + +
Sbjct: 74 TVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKT 107
>pdb|2Q1X|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1X|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Citrate.
pdb|2Q1Y|A Chain A, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
pdb|2Q1Y|B Chain B, Crystal Structure Of Cell Division Protein Ftsz From
Mycobacterium Tuberculosis In Complex With Gtp-Gamma-S
Length = 379
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 47 IIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSD 106
I G + D++GD VR++ + A + GP GR P +G A + S
Sbjct: 290 IFGTVIDDSLGDEVRVTVIAAGFDVSGP--------------GRKPVMGETGGAHRIESA 335
Query: 107 GSGEHHGWYCNYVEVTSTGVHTRCA 131
+G+ V+ S +HT A
Sbjct: 336 KAGKLTSTLFEPVDAVSVPLHTNGA 360
>pdb|1RLU|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RLU|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With
Gtp-Gamma-S
pdb|1RQ2|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ2|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Citrate
pdb|1RQ7|A Chain A, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
pdb|1RQ7|B Chain B, Mycobacterium Tuberculosis Ftsz In Complex With Gdp
Length = 382
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 14/85 (16%)
Query: 47 IIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSD 106
I G + D++GD VR++ + A + GP GR P +G A + S
Sbjct: 293 IFGTVIDDSLGDEVRVTVIAAGFDVSGP--------------GRKPVMGETGGAHRIESA 338
Query: 107 GSGEHHGWYCNYVEVTSTGVHTRCA 131
+G+ V+ S +HT A
Sbjct: 339 KAGKLTSTLFEPVDAVSVPLHTNGA 363
>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|B Chain B, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|C Chain C, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|D Chain D, Crystal Structure Of Ispg (Gcpe)
Length = 366
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 18 NIAFADDSDDCVYTVYIRTGSIFKGGTDSI--IGVTLYDAVGDGVRIS 63
N+ FA+ +D ++ G KG S IG+ LY +GD VR+S
Sbjct: 196 NLIFAERTDVPLHIGITEAGMGTKGIIKSSVGIGILLYMGIGDTVRVS 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,037,641
Number of Sequences: 62578
Number of extensions: 222806
Number of successful extensions: 358
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 358
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)