Query 031460
Match_columns 159
No_of_seqs 108 out of 679
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 14:25:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01754 PLAT_plant_stress PLAT 100.0 3.2E-41 6.9E-46 253.4 14.7 127 28-155 1-128 (129)
2 cd01752 PLAT_polycystin PLAT/L 100.0 2.5E-36 5.4E-41 223.4 15.6 119 28-156 1-119 (120)
3 cd01756 PLAT_repeat PLAT/LH2 d 100.0 5.3E-35 1.2E-39 216.2 15.6 116 29-155 2-118 (120)
4 cd01753 PLAT_LOX PLAT domain o 100.0 9.4E-34 2E-38 208.2 13.0 105 28-144 1-105 (113)
5 cd01757 PLAT_RAB6IP1 PLAT/LH2 100.0 1E-31 2.3E-36 197.9 14.8 106 29-154 2-113 (114)
6 cd00113 PLAT PLAT (Polycystin- 100.0 1.5E-30 3.2E-35 189.7 14.8 108 28-146 1-108 (116)
7 cd02899 PLAT_SR Scavenger rece 100.0 3.3E-30 7.3E-35 188.6 13.4 106 29-155 2-107 (109)
8 PF01477 PLAT: PLAT/LH2 domain 100.0 9.6E-29 2.1E-33 178.1 9.9 112 30-154 1-112 (113)
9 smart00308 LH2 Lipoxygenase ho 100.0 6.8E-28 1.5E-32 173.0 13.8 104 28-143 1-104 (105)
10 PF06232 ATS3: Embryo-specific 99.9 3.6E-22 7.8E-27 148.7 11.8 106 25-144 11-117 (125)
11 cd01755 PLAT_lipase PLAT/ LH2 99.8 8.4E-19 1.8E-23 130.0 12.5 95 28-135 1-102 (120)
12 cd01758 PLAT_LPL PLAT/ LH2 dom 99.7 4.9E-16 1.1E-20 117.9 11.9 96 28-135 1-116 (137)
13 KOG2080 Uncharacterized conser 99.0 2.7E-10 5.9E-15 106.0 5.2 98 27-146 973-1070(1295)
14 cd01759 PLAT_PL PLAT/LH2 domai 98.9 4.6E-08 1E-12 72.1 11.4 95 29-139 2-99 (113)
15 TIGR03230 lipo_lipase lipoprot 98.2 3.8E-05 8.3E-10 68.4 12.4 98 25-135 306-412 (442)
16 cd01751 PLAT_LH2 PLAT/ LH2 dom 93.0 1.3 2.8E-05 33.7 9.1 54 86-145 71-126 (137)
17 PLN02264 lipoxygenase 76.6 26 0.00056 34.4 10.0 53 86-145 159-213 (919)
18 PLN02337 lipoxygenase 69.7 19 0.00041 35.1 7.3 54 86-145 96-151 (866)
19 PF03207 OspD: Borrelia outer 58.5 5.6 0.00012 31.7 1.3 17 3-19 5-21 (254)
20 PF05753 TRAP_beta: Translocon 54.1 79 0.0017 24.9 7.2 58 6-65 1-59 (181)
21 PLN02305 lipoxygenase 49.1 70 0.0015 31.5 7.2 53 86-145 155-209 (918)
22 PRK10355 xylF D-xylose transpo 47.4 23 0.00049 29.7 3.4 32 1-37 1-33 (330)
23 PF05641 Agenet: Agenet domain 31.1 57 0.0012 21.2 2.7 26 99-124 5-30 (68)
24 PF10972 DUF2803: Protein of u 21.9 84 0.0018 25.2 2.6 20 12-35 8-27 (213)
25 PRK10903 peptidyl-prolyl cis-t 20.8 2.1E+02 0.0045 22.5 4.6 24 27-57 26-49 (190)
26 smart00112 CA Cadherin repeats 20.6 2.4E+02 0.0051 17.8 4.2 33 26-58 43-77 (79)
27 COG3746 OprP Phosphate-selecti 20.3 1.7E+02 0.0036 26.2 4.2 53 3-55 5-58 (426)
No 1
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=3.2e-41 Score=253.36 Aligned_cols=127 Identities=66% Similarity=1.238 Sum_probs=115.6
Q ss_pred eEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 28 CVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
|.|+|+|+||++++|||||+|+|+|+|++|++.+..++++++||+.++++.||||++|+|.+..++++|+|++|+|||||
T Consensus 1 ~~Y~I~V~TG~~~gAGTdanV~i~l~G~~G~s~~~~l~~~~~~l~~~~~~~FerG~~d~F~v~~~~~lG~l~~irI~HDn 80 (129)
T cd01754 1 CVYTIYVQTGSIWKAGTDSRISLQIYDADGPGLRIANLEAWGGLMGAGHDYFERGNLDRFSGRGPCLPSPPCWMNLTSDG 80 (129)
T ss_pred CEEEEEEEECCCcccCCcceEEEEEEeCCCCcccEEcccccccccccccccccCCCccEEEEEeccCCCCeEEEEEEECC
Confidence 68999999999999999999999999999998766555567788888899999999999999998889999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCe-eeeEEEecccceeccCCCceeEEEEe
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTR-CAQQQFTIEQWLATDTSPYELSVFRI 155 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~-~~~~~F~~~rWl~~d~~~~~l~~~~~ 155 (159)
+|.+|+|||++|+|++.+++ + ..+|+|||+|||+.|++|++|+|+++
T Consensus 81 ~G~~p~W~l~~V~V~d~~~~-~~~~~~~F~c~rWLa~d~~~~~~~~~~~ 128 (129)
T cd01754 81 TGNHPGWYVNYVEVTQAGQH-APCMQHLFAVEQWLATDESPYMLTAVRN 128 (129)
T ss_pred CCCCCCcccCEEEEEeCCCC-CcCcEEEEEecEeccCCCCcceeEEEec
Confidence 99999999999999997664 2 12399999999999999999999986
No 2
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=2.5e-36 Score=223.39 Aligned_cols=119 Identities=27% Similarity=0.374 Sum_probs=109.3
Q ss_pred eEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 28 CVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
+.|+|+|+||++++|||||+|+|+|+|++|++.+ ..|++ +.+++||||++|+|.+..+.++|+|++|+||||+
T Consensus 1 ~~Y~v~v~Tg~~~gAGT~a~V~i~L~G~~g~s~~-~~L~~------~~~~~F~rG~~~~f~i~~~~dlG~l~~i~l~hd~ 73 (120)
T cd01752 1 YLYLVTVFTGWRRGAGTTAKVTITLYGAEGESEP-HHLRD------PEKPIFERGSVDSFLLTTPFPLGELQSIRLWHDN 73 (120)
T ss_pred CEEEEEEEECCCCCCCcccEEEEEEEeCCCCccc-EEcCC------CCccceeCCCeeEEEecCccCCCCccEEEEEECC
Confidence 4799999999999999999999999999998854 45654 5568999999999999998789999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCCCceeEEEEee
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTSPYELSVFRII 156 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~~~~l~~~~~~ 156 (159)
+|..|+|||++|+|++++++ +. |.|||+|||+.+++|++++|++-+
T Consensus 74 ~g~~~~W~l~~V~V~~~~t~-~~--~~F~~~rWl~~~~~d~~~~r~~~~ 119 (120)
T cd01752 74 SGLSPSWYLSRVIVRDLQTG-KK--WFFLCNDWLSVEEGDGTVERTFPV 119 (120)
T ss_pred CCCCCCeEEEEEEEEECCCC-cE--EEEEeCcEECCcCCCCEEEEEEEC
Confidence 99999999999999999887 55 999999999999999999999864
No 3
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=5.3e-35 Score=216.16 Aligned_cols=116 Identities=28% Similarity=0.453 Sum_probs=106.9
Q ss_pred EEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCC-CCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGP-GYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 29 ~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p-~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
.|+|+|+||++++|||||+|+|+|+|++|++. ...|++ + .++.||||++|+|.+++ .++|+|++|+||||+
T Consensus 2 ~Y~v~v~TG~~~~AGT~a~V~i~L~G~~g~s~-~~~L~~------~~~~~~FerGs~d~F~i~~-~~lG~l~~i~i~~d~ 73 (120)
T cd01756 2 TYEVTVKTGDVKGAGTDANVFITLYGENGDTG-KRKLKK------SNNKNKFERGQTDKFTVEA-VDLGKLKKIRIGHDN 73 (120)
T ss_pred EEEEEEEECCCcCCCCCcEEEEEEEeCCCccc-cEEccC------CCcCCcccCCCeEEEEEEe-cCCCCeEEEEEEECC
Confidence 69999999999999999999999999999875 456765 3 57899999999999999 579999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCCCceeEEEEe
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTSPYELSVFRI 155 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~~~~l~~~~~ 155 (159)
.|..++|||++|+|++.+++ +. |.|||+|||+.+++|+.++|++-
T Consensus 74 ~g~~~~W~~~~V~V~~~~~~-~~--~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 74 SGLGAGWFLDKVEIREPGTG-DE--YTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred CCCCCCcEEeEEEEEECCCc-eE--EEEEeCCccCCCCCCCEEEEEEE
Confidence 99999999999999999877 55 99999999999999999999874
No 4
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=100.00 E-value=9.4e-34 Score=208.23 Aligned_cols=105 Identities=30% Similarity=0.509 Sum_probs=94.2
Q ss_pred eEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 28 CVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
..|+|+|+||++++|||||+|+|+|+|++|++.. ..|++ +. .+||||++|+|.++.+.++|+|++|+||||+
T Consensus 1 ~~Y~V~V~Tg~~~~AGT~a~V~i~l~G~~g~S~~-~~L~~------~~-~~FerG~~d~F~v~~~~~lG~l~~i~i~~d~ 72 (113)
T cd01753 1 AEYKVTVATGSSLFAGTDDYIYLTLVGTAGESEK-QLLDR------PG-YDFERGAVDEYKVKVPEDLGELLLVRLRKRK 72 (113)
T ss_pred CEEEEEEEECCCcCCccccEEEEEEEECCCcccC-EEcCC------CC-CccCCCCeeEEEEecccCCCCcEEEEEEECC
Confidence 3799999999999999999999999999998864 45654 33 3599999999999998889999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceecc
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATD 144 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d 144 (159)
+|..|+|||++|+|++++ + +. |.|||+|||+++
T Consensus 73 ~g~~~~W~l~~V~V~~~~-~-~~--~~F~c~rWl~~~ 105 (113)
T cd01753 73 YLLFDAWFCNYITVTGPG-G-DE--YHFPCYRWIEGY 105 (113)
T ss_pred CCCCCCeeecEEEEEcCC-C-CE--EEEEhHHeECCC
Confidence 999999999999999887 5 44 999999999875
No 5
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=99.98 E-value=1e-31 Score=197.89 Aligned_cols=106 Identities=16% Similarity=0.161 Sum_probs=93.2
Q ss_pred EEEEEEEcCCC-CCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 29 VYTVYIRTGSI-FKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 29 ~Y~V~V~TG~~-~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
.|+|+|+||++ ++|||||||+|+|+|++|++.+ ..|++ +.| .|.+.. .+||+|.+|+|||||
T Consensus 2 ~Y~VtV~TG~~~~gAGT~anV~i~L~G~~g~s~~-~~L~~---------~~f------~~~v~~-~~LG~L~~irIwHDn 64 (114)
T cd01757 2 PYHVVIVPSKKLGGSMFTANPWICVSGELGETPP-LQIPK---------NSL------EMTFDC-QNLGKLTTVQIGHDN 64 (114)
T ss_pred eEEEEEEeCCCCCCCCCcceEEEEEEEcCCCcCC-EEecC---------Cce------EEEEec-CCcCCcEEEEEEECC
Confidence 69999999999 5999999999999999998754 45543 333 466666 579999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCCC-----ceeEEEE
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTSP-----YELSVFR 154 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~~-----~~l~~~~ 154 (159)
+|..|+|||++|+|++.+++ +. |+|||+|||+.+++| ++++|.+
T Consensus 65 sG~~~~Wfl~~V~V~d~~t~-~~--~~FpC~rWLa~~~~D~~~~~g~~~r~l 113 (114)
T cd01757 65 SGLLAKWLVEYVMVRNEITG-HT--YKFPCGRWLGEGVDDGNGEDGSLERVL 113 (114)
T ss_pred CCCCCCeeeeEEEEEeCCCC-CE--EEEecCceecCCCCcccccCCeEEEEe
Confidence 99999999999999998777 55 999999999999999 9999986
No 6
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=99.97 E-value=1.5e-30 Score=189.70 Aligned_cols=108 Identities=35% Similarity=0.623 Sum_probs=96.8
Q ss_pred eEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 28 CVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
|.|+|+|+||++.+|||||+|+|+|+|++|++.....++. + .. ||||++|+|.++.++++|+|++|+|+||+
T Consensus 1 ~~Y~v~V~Tg~~~~agT~~~v~i~l~g~~g~s~~~~l~~~------~-~~-f~~g~~~~f~v~~~~~lG~i~~v~l~~d~ 72 (116)
T cd00113 1 CRYTVTIKTGDKKGAGTDSNISLALYGENGNSSDIPILDG------P-GS-FERGSTDTFQIDLKLDIGDITKVYLRRDG 72 (116)
T ss_pred CEEEEEEEECCCCCCCccCEEEEEEEeCCCCcccEEccCC------C-Cc-ccCCCceEEEEeccCCCcCeEEEEEEECC
Confidence 5899999999999999999999999999999876544432 2 22 99999999999998789999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCC
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTS 146 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~ 146 (159)
.|..|+|||++|+|++.+++ +. +.|+|++||+.+..
T Consensus 73 ~g~~~~W~l~~V~V~~~~~~-~~--~~F~~~~Wl~~~~~ 108 (116)
T cd00113 73 SGLSDGWYCESITVQALGTK-KV--YTFPVNRWVLGGKW 108 (116)
T ss_pred CCCCCCEEEeEEEEEeCCCC-CE--EEEEeCCCcccCCC
Confidence 99999999999999998876 54 99999999998876
No 7
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=99.97 E-value=3.3e-30 Score=188.56 Aligned_cols=106 Identities=30% Similarity=0.493 Sum_probs=90.3
Q ss_pred EEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecCC
Q 031460 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDGS 108 (159)
Q Consensus 29 ~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~~ 108 (159)
.|+|+|+||+..+|||+|+|+|+|+|++|++.+. .| .++|+||++|+|.++ +.+||+|..|+|+ |.
T Consensus 2 ~Y~I~V~TG~~~~AGT~~~V~i~L~G~~g~S~~~-~L----------~~~F~~G~~d~F~v~-~~dLG~l~~i~l~--n~ 67 (109)
T cd02899 2 TYTASVQTGKDKEAGTNGTIEITLLGSSGRSNPK-TL----------SQGFYPGSLKRIRFR-AADVGDINAIILS--NT 67 (109)
T ss_pred eEEEEEEECCCCCCCccceEEEEEEECCCCcCCE-Ec----------cCccCCCceEEEEEC-ccccCceEEEEEE--CC
Confidence 6999999999999999999999999999988654 44 346999999999999 6779999999995 45
Q ss_pred CCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCCCceeEEEEe
Q 031460 109 GEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTSPYELSVFRI 155 (159)
Q Consensus 109 G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~~~~l~~~~~ 155 (159)
|..++|||++|+|+++ ++ +. |+|||+|||+. |+.-..+++
T Consensus 68 g~~~~Wf~~~V~V~~~-~g-~~--~~Fpc~rWla~---~~~~~v~~~ 107 (109)
T cd02899 68 ALNDPWYCDYVRIKSE-DG-KV--FAFNVKRWIGY---PYEQSVEVS 107 (109)
T ss_pred CCCCCceeeEEEEECC-CC-CE--EEEEcceeeCC---chhceEEEe
Confidence 5899999999999984 45 44 89999999998 555444443
No 8
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.96 E-value=9.6e-29 Score=178.09 Aligned_cols=112 Identities=30% Similarity=0.466 Sum_probs=97.4
Q ss_pred EEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecCCC
Q 031460 30 YTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDGSG 109 (159)
Q Consensus 30 Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~~G 109 (159)
|+|+|+||+..+|||||+|+|+|+|++|++.....++. ....+ |++|+|.+..+.++|+|.+|+|+|++.+
T Consensus 1 Y~v~v~Tg~~~~aGT~~~V~i~l~G~~g~s~~~~l~~~-------~~~~~--g~~d~F~i~~~~~lG~i~~i~i~~~~~~ 71 (113)
T PF01477_consen 1 YRVTVKTGDERGAGTDANVYITLYGSKGKSGEIELLDP-------SGFNF--GSTDTFTIETPEDLGEIQKIRIWHDGSG 71 (113)
T ss_dssp EEEEEEEESSTEEEESSEEEEEEEETTEEEEEEEEEEE-------EETST--TEEEEEEEEESSCGCSEEEEEEEEESSS
T ss_pred CEEEEEECCCCCCCcCCeEEEEEEECCCCcceEEEeee-------eeccc--CceEEeeeeecccCCCCcEEEEEEccCC
Confidence 99999999999999999999999999999876544433 11222 9999999999778999999999999999
Q ss_pred CCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCCCceeEEEE
Q 031460 110 EHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTSPYELSVFR 154 (159)
Q Consensus 110 ~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~~~~l~~~~ 154 (159)
..++|||++|+|++..++ .. |.|||++||..++ ++..+|.+
T Consensus 72 ~~~~W~l~~V~V~~~~~~-~~--~~F~~~~Wl~~~~-~~~~~rvf 112 (113)
T PF01477_consen 72 PSPSWYLDSVVVTDGETG-RT--YTFPCNRWLDPDK-DYKTERVF 112 (113)
T ss_dssp SSSEEEEEEEEEEETTTS-EE--EEEEEEEEESTTE-GCSSEEEE
T ss_pred CccceEEEEEEEEeCCCC-cE--EEEEcCCEECCCC-CCCCccEE
Confidence 999999999999997777 55 9999999999988 77777764
No 9
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.96 E-value=6.8e-28 Score=173.03 Aligned_cols=104 Identities=23% Similarity=0.327 Sum_probs=89.4
Q ss_pred eEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 28 CVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
..|+|+|+||++.+|||||+|+|+|+|++|++.. ..+.. ..+..|+||++++|.++.+.++|+|.+|+|+||+
T Consensus 1 ~~Y~v~V~Tg~~~~aGT~~~V~l~L~g~~~~s~~-~~~~~------~~~~~f~~g~~~~f~v~~~~~lG~l~~v~v~~d~ 73 (105)
T smart00308 1 GKYKVTVTTGGLDFAGTTASVSLSLVGAEGDGKE-SKLDY------LFKGIFARGSTYEFTFDVDEDFGELGAVKIKNEH 73 (105)
T ss_pred CEEEEEEEECCccCCCccceEEEEEEeCCCCCcc-eeccc------cCCccccCCceEEEEEecccCCCCcEEEEEEeCC
Confidence 3799999999999999999999999999976432 22322 1235699999999999998889999999999999
Q ss_pred CCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceec
Q 031460 108 SGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLAT 143 (159)
Q Consensus 108 ~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~ 143 (159)
+ .++|||++|+|++.+++ +. ++|+|++||+.
T Consensus 74 ~--~~~w~l~~V~V~~~~~~-~~--~~F~c~~Wl~~ 104 (105)
T smart00308 74 R--HPEWFLKSITVKDLPTG-GK--YHFPCNSWVYP 104 (105)
T ss_pred C--CCCeEEEEEEEEECCCC-CE--EEEEcCceeCC
Confidence 7 79999999999998776 54 99999999975
No 10
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=99.88 E-value=3.6e-22 Score=148.71 Aligned_cols=106 Identities=34% Similarity=0.617 Sum_probs=94.2
Q ss_pred CCCeEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCC-CccccCCeeEEEeeCCCCCCCcEEEEE
Q 031460 25 SDDCVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGY-NYFERGNLDIFSGRGPCLGGPVCALNL 103 (159)
Q Consensus 25 ~~~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~-~~Fergs~D~F~i~~~~~lG~i~~I~I 103 (159)
.+.|.|+|+|+|++...|||+++|+|.+.++.|+.....+|++ |.. +.|||+++|+|.+.++| +.+||+|.|
T Consensus 11 ~~~CsYtv~IkTsC~s~a~T~d~Isi~FgDa~Gn~v~~~~Ld~------p~~~~~FErCs~DtF~v~G~C-~~~IC~lyL 83 (125)
T PF06232_consen 11 AGSCSYTVTIKTSCSSPAGTDDQISIAFGDAYGNQVYVPRLDD------PGSGDTFERCSTDTFQVTGPC-LYQICYLYL 83 (125)
T ss_pred CCCCcEEEEEEeCcCCCcCCcceEEEEEecCCCCEEEEccCCC------CCccCchhcCCcceeEeeccc-CCcccEEEE
Confidence 3469999999999999999999999999999999988888876 665 89999999999999999 779999999
Q ss_pred EecCCCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceecc
Q 031460 104 SSDGSGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATD 144 (159)
Q Consensus 104 ~hd~~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d 144 (159)
.+++. ++|++++|+|...... . ..|.+++||..+
T Consensus 84 ~r~G~---dGW~Pe~V~Iy~~~~~--~--~~F~~~~~lp~~ 117 (125)
T PF06232_consen 84 YRSGS---DGWKPEWVQIYGSGSK--P--VTFYFNTFLPNG 117 (125)
T ss_pred EEccC---CCCEeCeEEEEEcCCC--C--eEEECCCcCCCC
Confidence 99764 8999999999886433 2 799999999663
No 11
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.80 E-value=8.4e-19 Score=130.00 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=84.1
Q ss_pred eEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecC
Q 031460 28 CVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDG 107 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~ 107 (159)
+.|+|+|.||.+.+|||+++|+|.|+|++|++.. ..|.. ..|++|++++|.+.++.++|+|.+|++||||
T Consensus 1 ~hY~vtV~~~~~~~agt~~~v~v~L~G~~g~s~~-~~l~~---------~~~~~g~~~sfli~t~~~lG~l~~v~~~~dn 70 (120)
T cd01755 1 WHYQVKVHLSGKKNLEVDGTFTVSLYGTKGETEQ-LPIVL---------GELKPNKTYSFLIDTEVDIGDLLKVKFKWEN 70 (120)
T ss_pred CEEEEEEEEeCccccCcCccEEEEEEcCCCCccc-EEEeC---------CcccCCCEEEEEEEcCCCccceEEEEEEEcC
Confidence 4799999999999999999999999999999864 45533 3479999999999999999999999999999
Q ss_pred CCC-------CCCeeeeEEEEEeCCCCCeeeeEEE
Q 031460 108 SGE-------HHGWYCNYVEVTSTGVHTRCAQQQF 135 (159)
Q Consensus 108 ~G~-------~~~W~l~~V~V~~~~~~~~~~~~~F 135 (159)
++. .|.||+++|.|++.+++ ++ +.|
T Consensus 71 ~~~~~~~~~~~p~~~~~~I~Vq~get~-~~--~~F 102 (120)
T cd01755 71 NVINSNSGETLPKLGARKIRVKSGETQ-KK--FTF 102 (120)
T ss_pred CCcccccccCCCcEEEEEEEEEECCCC-CE--EEE
Confidence 983 68999999999998877 55 666
No 12
>cd01758 PLAT_LPL PLAT/ LH2 domain present in lipoprotein lipase (LPL). LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs) and has therefeore has a profound influence on triglyceride and high-density lipoprotein (HDL) cholesterol levels in the blood. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=99.68 E-value=4.9e-16 Score=117.89 Aligned_cols=96 Identities=17% Similarity=0.155 Sum_probs=83.1
Q ss_pred eEEEEEEEcCCCCCCC-CCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEE-Ee
Q 031460 28 CVYTVYIRTGSIFKGG-TDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNL-SS 105 (159)
Q Consensus 28 ~~Y~V~V~TG~~~~AG-Tda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I-~h 105 (159)
+.|+|+|.|+.+..|| |+++|+|.|+|++|++.. ..|.. ...+++|++++|.|.++.++|+|..|++ ||
T Consensus 1 yhYqVtV~~~~~~~~~~t~~~v~i~L~G~~g~S~~-~~l~~--------~~~~~~G~t~sfLi~t~~dlG~L~~vk~~W~ 71 (137)
T cd01758 1 FHYQLKIHFFNQTNRIETDPTFTISLYGTLGESEN-LPLTL--------PEGITGNKTNSFLITTEKDIGDLLMLKLKWE 71 (137)
T ss_pred CeEEEEEEEecccCCCcccceEEEEEEcCCCcccC-EEEec--------CcccCCCCeEEEEEECCCCcCCEEEEEEEEe
Confidence 4799999999999999 999999999999999854 45533 2456999999999999999999999999 99
Q ss_pred cCCCCCCCee------------------eeEEEEEeCCCCCeeeeEEE
Q 031460 106 DGSGEHHGWY------------------CNYVEVTSTGVHTRCAQQQF 135 (159)
Q Consensus 106 d~~G~~~~W~------------------l~~V~V~~~~~~~~~~~~~F 135 (159)
||.+..++|| .++|.|+..+++ ++ +.|
T Consensus 72 ~n~~~~~sW~~~~~~~~~~~~~~~p~l~~~~I~Vk~GEtq-~~--~~F 116 (137)
T cd01758 72 GSSLWSNSWWTVQTIIPWSGWWRGSGLTIRKIRVKAGETQ-KK--MTF 116 (137)
T ss_pred CCCCCChhhhccccccccccccCCCeEEEEEEEEEeCCCc-cE--EEE
Confidence 9999998985 789999987766 54 666
No 13
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=99.02 E-value=2.7e-10 Score=105.98 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=82.2
Q ss_pred CeEEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEec
Q 031460 27 DCVYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSD 106 (159)
Q Consensus 27 ~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd 106 (159)
...|+|.|.|| .+.|+.+||+|.+-|+-+++.+ ..+. | + +-.|++... ++|.+.-++|.||
T Consensus 973 k~~Y~vvIv~~--~g~~~~~~iWi~vsGsl~eT~~-i~~~-------~--n------~~~f~F~~k-NLG~LtT~rIGHd 1033 (1295)
T KOG2080|consen 973 KMDYQVVIVTG--SGRGAIPAIWVTVEGSLCSTPP-IMLK-------P--N------TPLFKFDHK-NLGILSTLRIGHQ 1033 (1295)
T ss_pred ccceEEEEEeC--CCCcccCceEEEEecccCCCCc-eeeC-------C--C------CceeEEecc-ccceeeeEEeccc
Confidence 45699999999 7899999999999999988754 4442 2 2 334777776 4999999999999
Q ss_pred CCCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccCC
Q 031460 107 GSGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDTS 146 (159)
Q Consensus 107 ~~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~~ 146 (159)
++|...-|++++|.|++.-++ .. |.|||.||++..+.
T Consensus 1034 nS~~~~kW~vEyV~vRNEiTG-~T--YKFPCGrw~G~ged 1070 (1295)
T KOG2080|consen 1034 QSEKPVQWFLEYVLVRNEITG-QT--YKFPCGRWFGNGED 1070 (1295)
T ss_pred CCCcchHHHHHHhhhhceecc-ce--eccccccccCCccc
Confidence 999999999999999998777 54 99999999987543
No 14
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=98.87 E-value=4.6e-08 Score=72.07 Aligned_cols=95 Identities=16% Similarity=0.067 Sum_probs=76.1
Q ss_pred EEEEEEEcCCCCCCCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEEEecCC
Q 031460 29 VYTVYIRTGSIFKGGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNLSSDGS 108 (159)
Q Consensus 29 ~Y~V~V~TG~~~~AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I~hd~~ 108 (159)
.|+|+|.-..... ++..++|.|+|.+|++. ...+. ...|+.|++.+|.|..+.++|++.+|.++.++.
T Consensus 2 ~Yqv~V~~s~~~~--~~g~~~vsL~G~~g~s~-~~~i~---------~g~l~pg~tys~li~~d~dvG~l~~Vkf~W~~~ 69 (113)
T cd01759 2 RYKVSVTLSGKKK--VTGTILVSLYGNKGNTR-QYEIF---------KGTLKPGNTYSAFIDVDVDVGPLTKVKFIWNNN 69 (113)
T ss_pred eEEEEEEEecccc--cCceEEEEEEcCCCCcc-ceEEE---------eeeecCCCEEEEEEEccCCCCCEEEEEEEEeCC
Confidence 6999998877644 89999999999999985 34453 235999999999999998999999999988887
Q ss_pred CCC---CCeeeeEEEEEeCCCCCeeeeEEEeccc
Q 031460 109 GEH---HGWYCNYVEVTSTGVHTRCAQQQFTIEQ 139 (159)
Q Consensus 109 G~~---~~W~l~~V~V~~~~~~~~~~~~~F~~~r 139 (159)
... |.=+.++|.|+..+++ ++ +.| |-+
T Consensus 70 ~~n~~~p~~~~~~I~Vq~Ge~~-~~--~~F-C~~ 99 (113)
T cd01759 70 VINITLPKVGAEKITVQSGKDG-KV--FNF-CSS 99 (113)
T ss_pred ccCCCCCeEEEEEEEEEeCCCc-cE--EEE-CCC
Confidence 654 4455999999988766 44 666 444
No 15
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.15 E-value=3.8e-05 Score=68.37 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=77.2
Q ss_pred CCCeEEEEEEEcCCCCC-CCCCeeeEEEEEECCCCeeeeeeccccCCCCCCCCCccccCCeeEEEeeCCCCCCCcEEEEE
Q 031460 25 SDDCVYTVYIRTGSIFK-GGTDSIIGVTLYDAVGDGVRISNLEAWGGLMGPGYNYFERGNLDIFSGRGPCLGGPVCALNL 103 (159)
Q Consensus 25 ~~~~~Y~V~V~TG~~~~-AGTda~V~I~L~G~~G~s~~~~~Ld~~~~~~~p~~~~Fergs~D~F~i~~~~~lG~i~~I~I 103 (159)
.....|+|+|...+... .+++..++|.|+|++|++.. ..+. ...++.|.+.+|.|..+.++|++.+|++
T Consensus 306 f~~~~y~v~v~~~~~~~~~~~~~~~~~~l~g~~~~~~~-~~~~---------~~~~~~~~t~~~~i~~~~~~g~~~~v~~ 375 (442)
T TIGR03230 306 YKVFHYQVKVHFFGKTSLSHTDQPMKISLYGTHGEKEN-IPFT---------LPEVSTNKTYSFLITTDVDIGELLMVKL 375 (442)
T ss_pred ceEEEEEEEEEEeccccccccCCcEEEEEEcCCCCccc-eEEe---------eeeecCCCeEEEEEecccCCCceEEEEE
Confidence 34678999999987654 47899999999999999853 4442 2359999999999999999999999999
Q ss_pred EecCCCC--------CCCeeeeEEEEEeCCCCCeeeeEEE
Q 031460 104 SSDGSGE--------HHGWYCNYVEVTSTGVHTRCAQQQF 135 (159)
Q Consensus 104 ~hd~~G~--------~~~W~l~~V~V~~~~~~~~~~~~~F 135 (159)
+.++... .|.=+.++|+|+..+++ ++ +.|
T Consensus 376 ~w~~~~~~~~~~~~~~~~~~~~~i~v~~ge~~-~~--~~f 412 (442)
T TIGR03230 376 KWEKDTYISWSDWWSSPGFHIRKLRIKSGETQ-SK--VIF 412 (442)
T ss_pred EEeCCCcccchhhhcCCceeEEEEEEEeCCCc-cE--EEE
Confidence 7777653 24445899999987766 44 666
No 16
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=93.02 E-value=1.3 Score=33.68 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=39.4
Q ss_pred EEEee--CCCCCCCcEEEEEEecCCCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccC
Q 031460 86 IFSGR--GPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDT 145 (159)
Q Consensus 86 ~F~i~--~~~~lG~i~~I~I~hd~~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~ 145 (159)
.|.++ .+.+.|.+=.+.|...- ..--|++.|++...... .. .+|+||.|+....
T Consensus 71 ~y~~~F~v~~~fG~pGAi~V~N~h---~~EffLksitLe~~p~~-g~--v~F~CNSWVyp~~ 126 (137)
T cd01751 71 AYEAEFEVPASFGPPGAVLVKNEH---HSEFFLKSITLEGFGGS-GT--ITFVCNSWVYPKK 126 (137)
T ss_pred EEEEEEEeecccCCccEEEEEECC---CceEEEEEEEEeCCCCC-cc--EEEEccccCccCC
Confidence 55533 45679999999997443 35789999999775332 23 7999999998654
No 17
>PLN02264 lipoxygenase
Probab=76.61 E-value=26 Score=34.41 Aligned_cols=53 Identities=8% Similarity=0.251 Sum_probs=39.2
Q ss_pred EEEee--CCCCCCCcEEEEEEecCCCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccC
Q 031460 86 IFSGR--GPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDT 145 (159)
Q Consensus 86 ~F~i~--~~~~lG~i~~I~I~hd~~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~ 145 (159)
.|.++ .+.+.|.+=.+.|.... ..--|++.|++.....+ . .+|+||.|+....
T Consensus 159 ~y~~~F~~~~~fG~pGAi~V~N~h---~~EffL~~itle~~p~g--~--v~F~cnSWV~p~~ 213 (919)
T PLN02264 159 HYTAEFTVDSAFGSPGAITVTNKH---QKEFFLESITIEGFACG--P--VHFPCNSWVQSQK 213 (919)
T ss_pred EEEEEEEeccccCCcceEEEEeCC---CceEEEEEEEeccCCCC--c--EEEecCCccccCc
Confidence 56544 44679999999997544 35789999999765334 2 7999999998654
No 18
>PLN02337 lipoxygenase
Probab=69.65 E-value=19 Score=35.14 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.3
Q ss_pred EEEee--CCCCCCCcEEEEEEecCCCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccC
Q 031460 86 IFSGR--GPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDT 145 (159)
Q Consensus 86 ~F~i~--~~~~lG~i~~I~I~hd~~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~ 145 (159)
.|.++ .+.+.|.+=.|.|...- ..--|++.|++.....+ .. .+|+||.|+....
T Consensus 96 ~y~~~F~~~~~fG~pGAi~V~N~h---~~EffL~sitle~~p~~-g~--v~f~cnSWV~~~~ 151 (866)
T PLN02337 96 AFKVTFDWDEKIGVPGAFIIKNNH---HSEFYLKTVTLEDVPGH-GR--VHFVCNSWIYPAK 151 (866)
T ss_pred EEEEEEEecccCCCcceEEEEecC---CceEEEEEEEEecCCCC-Cc--EEEecCCccccCC
Confidence 45543 44679999999997544 35789999999764332 23 7999999998654
No 19
>PF03207 OspD: Borrelia outer surface protein D (OspD); InterPro: IPR004894 This is a family of outer surface proteins from Borrelia. The function of these proteins is unknown.
Probab=58.54 E-value=5.6 Score=31.74 Aligned_cols=17 Identities=82% Similarity=1.005 Sum_probs=15.0
Q ss_pred cchhHHHHHHHHhhhcc
Q 031460 3 IKNLLLSLFLLLSISNI 19 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (159)
||-+|+|+|+|++||..
T Consensus 5 ikill~slflllsisc~ 21 (254)
T PF03207_consen 5 IKILLLSLFLLLSISCV 21 (254)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 67899999999999865
No 20
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.07 E-value=79 Score=24.92 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhhcccccCCCCCeEEEEEEEcCCCCC-CCCCeeeEEEEEECCCCeeeeeec
Q 031460 6 LLLSLFLLLSISNIAFADDSDDCVYTVYIRTGSIFK-GGTDSIIGVTLYDAVGDGVRISNL 65 (159)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~Y~V~V~TG~~~~-AGTda~V~I~L~G~~G~s~~~~~L 65 (159)
|++.+++|+..+..+-.+. ...-.+.=...++.. .|.+=.|.+.++..-........|
T Consensus 1 ~~~~~~~~l~~~~~~~~~~--~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l 59 (181)
T PF05753_consen 1 MALFLLALLALASVAQEDS--PARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKL 59 (181)
T ss_pred ChhhhHHHHHHHHhccCCC--CcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEE
Confidence 4455554444444444444 666677777777666 699999999999985333333344
No 21
>PLN02305 lipoxygenase
Probab=49.12 E-value=70 Score=31.53 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=39.0
Q ss_pred EEEee--CCCCCCCcEEEEEEecCCCCCCCeeeeEEEEEeCCCCCeeeeEEEecccceeccC
Q 031460 86 IFSGR--GPCLGGPVCALNLSSDGSGEHHGWYCNYVEVTSTGVHTRCAQQQFTIEQWLATDT 145 (159)
Q Consensus 86 ~F~i~--~~~~lG~i~~I~I~hd~~G~~~~W~l~~V~V~~~~~~~~~~~~~F~~~rWl~~d~ 145 (159)
.|.++ .+.+.|.+-.+.|...- ..--|++.|++.....+ . .+|.||.|+....
T Consensus 155 ~~~~~f~~~~~fG~pGA~~v~N~h---~~ef~l~~i~l~~~p~g--~--v~f~cnSWv~~~~ 209 (918)
T PLN02305 155 EYAADFTVPFDFGKPGAVLVTNLH---GKEFYLMEIVIHGFDDG--P--IFFPANTWIHSRK 209 (918)
T ss_pred EEEEEEeeccccCCcceEEEEeCC---CceEEEEEEEEecCCCC--e--EEEeccCccccCC
Confidence 45433 44679999999997544 35789999999775334 3 7999999998644
No 22
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=47.45 E-value=23 Score=29.73 Aligned_cols=32 Identities=38% Similarity=0.389 Sum_probs=23.0
Q ss_pred CccchhHHHHH-HHHhhhcccccCCCCCeEEEEEEEcC
Q 031460 1 MEIKNLLLSLF-LLLSISNIAFADDSDDCVYTVYIRTG 37 (159)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Y~V~V~TG 37 (159)
|.|||+|+.+- +|+..|.+|.++ .|+|-+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Ig~i~~ 33 (330)
T PRK10355 1 MKIKNILLTLCASLLLTSVAAHAK-----EVKIGMAID 33 (330)
T ss_pred CchHHHHHHHHHHHHHhhccccCC-----CceEEEEec
Confidence 88999999887 778888877753 344444443
No 23
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=31.13 E-value=57 Score=21.19 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=17.1
Q ss_pred EEEEEEecCCCCCCCeeeeEEEEEeC
Q 031460 99 CALNLSSDGSGEHHGWYCNYVEVTST 124 (159)
Q Consensus 99 ~~I~I~hd~~G~~~~W~l~~V~V~~~ 124 (159)
+.++|..+..|...+||+..|.=...
T Consensus 5 ~~VEV~s~e~g~~gaWf~a~V~~~~~ 30 (68)
T PF05641_consen 5 DEVEVSSDEDGFRGAWFPATVLKENG 30 (68)
T ss_dssp -EEEEEE-SBTT--EEEEEEEEEEET
T ss_pred CEEEEEEcCCCCCcEEEEEEEEEeCC
Confidence 46778888888899999998764443
No 24
>PF10972 DUF2803: Protein of unknown function (DUF2803); InterPro: IPR021241 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.90 E-value=84 Score=25.20 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=11.6
Q ss_pred HHHhhhcccccCCCCCeEEEEEEE
Q 031460 12 LLLSISNIAFADDSDDCVYTVYIR 35 (159)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~Y~V~V~ 35 (159)
+|++.|..|.+++ .|.|.|.
T Consensus 8 ll~~~s~~a~A~~----wf~VEvi 27 (213)
T PF10972_consen 8 LLLLVSPTAQAER----WFQVEVI 27 (213)
T ss_pred HHHHhChhhhccc----ceEEEEE
Confidence 5666666666643 5555553
No 25
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=20.76 E-value=2.1e+02 Score=22.55 Aligned_cols=24 Identities=17% Similarity=0.087 Sum_probs=17.7
Q ss_pred CeEEEEEEEcCCCCCCCCCeeeEEEEEECCC
Q 031460 27 DCVYTVYIRTGSIFKGGTDSIIGVTLYDAVG 57 (159)
Q Consensus 27 ~~~Y~V~V~TG~~~~AGTda~V~I~L~G~~G 57 (159)
....+|.+.| |..+|.|.|+++..
T Consensus 26 ~~~~~v~l~T-------~~G~i~ieL~~~~a 49 (190)
T PRK10903 26 KGDPHVLLTT-------SAGNIELELNSQKA 49 (190)
T ss_pred CCCcEEEEEe-------ccccEEEEEeCCCC
Confidence 4455688888 45689999998853
No 26
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=20.60 E-value=2.4e+02 Score=17.82 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=20.1
Q ss_pred CCeEEEEEEEcCCCCC--CCCCeeeEEEEEECCCC
Q 031460 26 DDCVYTVYIRTGSIFK--GGTDSIIGVTLYDAVGD 58 (159)
Q Consensus 26 ~~~~Y~V~V~TG~~~~--AGTda~V~I~L~G~~G~ 58 (159)
....|.+.|.=.+..+ ..+...|.|.+...+-+
T Consensus 43 ~~~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd~ 77 (79)
T smart00112 43 EQPEYTLTVEATDGGGPPLSSTATVTVTVLDVNDN 77 (79)
T ss_pred CCCeEEEEEEEEECCCCCcccEEEEEEEEEECCCC
Confidence 3455666665555433 56677777777777643
No 27
>COG3746 OprP Phosphate-selective porin [Inorganic ion transport and metabolism]
Probab=20.32 E-value=1.7e+02 Score=26.24 Aligned_cols=53 Identities=23% Similarity=0.099 Sum_probs=36.1
Q ss_pred cchhHHHHHHHHhhhcccccCCCCCeEEEEEEEcCCCCC-CCCCeeeEEEEEEC
Q 031460 3 IKNLLLSLFLLLSISNIAFADDSDDCVYTVYIRTGSIFK-GGTDSIIGVTLYDA 55 (159)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~V~V~TG~~~~-AGTda~V~I~L~G~ 55 (159)
|+-+..++.|=+-+|+.+++..-...--.|+|+|..-.. +-||.++.++|.|.
T Consensus 5 i~~lfv~~~L~laaSA~q~a~~~~~~~~~~~i~~~~~p~~~t~d~~~~~klgGr 58 (426)
T COG3746 5 ISTLFVQLALGLAASAQQAAGTVTTDGADIVIKTKGGPEVATTDKETSAKLGGR 58 (426)
T ss_pred hhHHHHHHHHHhhhhhHhhcCCcccCccceeeeccCCCccccCCCceeEEeccE
Confidence 333333333445667666665555566778899988877 66699999999983
Done!