BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031461
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 100 bits (249), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 78/130 (60%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
M++ EK+E K G + F+ GKY +A +Y+K +E+ SF+++E +A LRL+
Sbjct: 138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+LN A C LKL+ +S C K LEL+ N K L+RR +AHL ++ E A AD ++ L
Sbjct: 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVL 257
Query: 121 TIDPNNRVVK 130
+ PNN+ K
Sbjct: 258 QLYPNNKAAK 267
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
MDT EK+E K G + F+ GKY +A +Y K +E + ++ E + L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+LN A C LKL +Y++ C K L L+ N K LYRR +A L +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
++P N+ +L + K +E+ + I+ M K
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 86/157 (54%)
Query: 2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSC 61
++ EK+E K G + F+ GKY +A +Y+K +E+ SF+++E +A LRL+
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
+LN A C LKL+ +S C K LEL+ N K L RR +AHL ++ E A AD ++ L
Sbjct: 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 122 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
+ PNN+ K + + R + +++ M ++
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 80/158 (50%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
MDT EK+E K G + F+ GKY +A +Y K +E + ++ E + L+
Sbjct: 259 MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+LN A C LKL +Y++ C K L L+ N K LYRR +A L +E E A+ D ++ L
Sbjct: 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Query: 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158
++P N+ +L + K +E+ + + M K
Sbjct: 379 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 416
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACK 69
E K+ GN F++ + A KKY K + +E + +D + + + LSC LN ACK
Sbjct: 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACK 283
Query: 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129
LK+ D+ C + LE++P N KALYRR+Q E ++A AD+K+A I P ++ +
Sbjct: 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343
Query: 130 KLVYMELKDK 139
+ +++K K
Sbjct: 344 QAELLKVKQK 353
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQ--ANGLR 58
M E+I A +R+K DGN LF+ K A ++YE A + F K+Q A ++
Sbjct: 170 MTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK 229
Query: 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 118
C+LN AAC +KL+ Y E C VL E N KAL+RR +A + +++ A D ++
Sbjct: 230 NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289
Query: 119 ALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF 151
A P+++ ++ L ++++ + Q E++
Sbjct: 290 AQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 12/122 (9%)
Query: 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC 68
+ E+ + +GN LF+ G Y A Y +A + D Q + + N AAC
Sbjct: 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---------DATPQDQAV---LHRNRAAC 74
Query: 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128
LKLEDY + + +K +E + +VKALYRRSQA K L++A D++R ++++P N+V
Sbjct: 75 HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134
Query: 129 VK 130
+
Sbjct: 135 FQ 136
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK--HQANGLRLSCY 62
EK+++ K +GN F+ + A KY++A H DD+ + + +SC
Sbjct: 33 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCN 91
Query: 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
LN A C K +DY + +KVL+++ NVKALY+ A++ LE+A+ ++ +A ++
Sbjct: 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151
Query: 123 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157
+PNN ++ Y +K +E K FG M K
Sbjct: 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
MD EA K+ GN ++ G Y +A + Y+KA +E + S
Sbjct: 3 MDPGNSAEAW---KNLGNAYYKQGDYQKAIEYYQKA---LELDPN------------NAS 44
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+ N K DY + K LEL+P N KA YRR A+ K + +KA D ++AL
Sbjct: 45 AWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Query: 121 TIDPNNRVVKLVYMELKDKQ 140
+DPNN K K KQ
Sbjct: 105 ELDPNNAKAKQNLGNAKQKQ 124
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQANGL 57
M EK +A +GN L+R G A+ KY A K ++ E Q +
Sbjct: 5 MTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQ 64
Query: 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117
LN CKL +E+Y E C+ +L NVKA ++R +AH ++A+AD
Sbjct: 65 ITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFA 124
Query: 118 RALTIDP 124
+ L +DP
Sbjct: 125 KVLELDP 131
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAA---KIIEFHHSFTDDEKHQANGLRLSC 61
EK +A +GN L+R G A+ KY A K ++ E Q +
Sbjct: 3 EKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPL 62
Query: 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
LN CKL +E+Y E C+ +L NVKA ++R +AH ++A+AD + L
Sbjct: 63 LLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLE 122
Query: 122 IDP 124
+DP
Sbjct: 123 LDP 125
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
GN ++ G Y A + Y+KA ++ N L NA K DY
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALEL-------------DPNNAEAWYNLGNAYYKQG--DYD 60
Query: 77 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136
E K LEL+P N +A Y A+ K + ++A ++AL +DPNN K
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 137 KDKQ 140
K KQ
Sbjct: 121 KQKQ 124
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%)
Query: 56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD 115
G + N K DY E K LEL+P N +A Y A+ K + ++A
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 116 IKRALTIDPNNRVVKLVYMELKDKQ 140
++AL +DPNN K K KQ
Sbjct: 66 YQKALELDPNNAEAKQNLGNAKQKQ 90
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE---FHHSFTDDEKHQANGLRLSC 61
+K+++ E + GN LF Y A Y A ++ + E + + +
Sbjct: 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPL 65
Query: 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
Y N + C L + D E ++VL+ E N KAL+RR++A + +L++AE D+K L
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125
Query: 122 IDP 124
P
Sbjct: 126 NHP 128
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY 62
H K + + K GN LF KY A+ Y +A N L Y
Sbjct: 2 PHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYY 46
Query: 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122
N A C LK++ + + C + LEL+ +VKA + Q L+ ++A A+++RA ++
Sbjct: 47 TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106
Query: 123 DPNNRV 128
R+
Sbjct: 107 AKEQRL 112
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 15/115 (13%)
Query: 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
K GN LF KY A+ Y +A N L Y N A C LK++
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQ 52
Query: 74 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128
+ + C + LEL+ +VKA + Q L+ ++A A+++RA ++ R+
Sbjct: 53 QPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 53/147 (36%), Gaps = 32/147 (21%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
MD EA GN ++ G Y A + Y+KA L
Sbjct: 3 MDPGNSAEAWYNL---GNAYYKQGDYDEAIEYYQKA----------------------LE 37
Query: 61 CYLNNAACKLKLE-------DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 113
Y NNA L DY E K LEL P N +A Y A+ K + ++A
Sbjct: 38 LYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 97
Query: 114 ADIKRALTIDPNNRVVKLVYMELKDKQ 140
++AL + PNN K K KQ
Sbjct: 98 EYYQKALELYPNNAEAKQNLGNAKQKQ 124
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 15/119 (12%)
Query: 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA 67
E + +K+ GN F+ G Y A + Y +A K + N + Y N AA
Sbjct: 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK------------RDPENAI---LYSNRAA 55
Query: 68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126
C KL ++ C + L+ +K R++ + E KA+ + AL +DP+N
Sbjct: 56 CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 11/111 (9%)
Query: 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 79
L R G+Y A+ KYE K +T K + C+ C K E E
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI------CH-----CFSKDEKPVEAI 315
Query: 80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
+C++VL++EP NV AL R++A+L ++A D + A + N++ ++
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 36 AAKIIEFHHSFT-DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94
A + +FH + D + + A R + +L K L D TKV++L+
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIQLKMDFTA 95
Query: 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
A +R LK +L++AE D K+ L +P+
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
GN ++ G Y A + Y+KA ++ + + N K DY
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALEL---------------DPRSAEAWYNLGNAYYKQGDYD 52
Query: 77 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124
E K LEL+P + +A Y A+ K + ++A ++AL +DP
Sbjct: 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS 76
GN ++ G Y A + Y+KA ++ + + N K DY
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALEL---------------DPRSAEAWYNLGNAYYKQGDYD 86
Query: 77 ETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124
E K LEL+P + +A Y A+ K + ++A ++AL +DP
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+ N K DY E K LEL+P + +A Y A+ K + ++A ++AL
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 121 TIDP 124
+DP
Sbjct: 63 ELDP 66
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 79
L R G+Y A+ KYE K +T K + C+ C K E E
Sbjct: 244 LIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERI------CH-----CFSKDEKPVEAI 292
Query: 80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
+C++VL+ EP NV AL R++A+L ++A D + A + N++ ++
Sbjct: 293 RICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIR 343
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 36 AAKIIEFHHSFT-DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94
A + +FH + D + + A R + +L K L D TKV+ L+
Sbjct: 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDL-------TKVIALKXDFTA 72
Query: 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
A +R LK +L++AE D K+ L +P+ +
Sbjct: 73 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 79
L R G+Y A+ KYE K +T K + C+ C K E E
Sbjct: 267 LIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERI------CH-----CFSKDEKPVEAI 315
Query: 80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
+C++VL+ EP NV AL R++A+L ++A D + A + N++ ++
Sbjct: 316 RVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIR 366
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 36 AAKIIEFHHSFT-DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94
A + +FH + D + + A R + +L K L D TKV++L+
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPD-------LTKVIQLKXDFTA 95
Query: 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
A +R LK +L++AE D K+ L +P+
Sbjct: 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+ N K DY E K LEL+P + +A Y A+ K + ++A ++AL
Sbjct: 5 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
Query: 121 TIDP 124
+DP
Sbjct: 65 ELDP 68
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
K+ GN F+ G Y +A K Y +A K N Y N AAC KL
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIK---------------RNPKDAKLYSNRAACYTKLL 64
Query: 74 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123
++ C + ++LEP +K R++ A + KA ++AL +D
Sbjct: 65 EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK 69
E K N F+A Y A K Y +A IE + S N + Y N +
Sbjct: 13 AEELKTQANDYFKAKDYENAIKFYSQA---IELNPS---------NAI---YYGNRSLAY 57
Query: 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129
L+ E Y T+ +EL+ +K YRR+ +++ + A D + + + P+++
Sbjct: 58 LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
Query: 130 KLVYME 135
K+ Y E
Sbjct: 118 KMKYQE 123
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Query: 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK 69
E K N F+A Y A K Y +A IE + S N + Y N +
Sbjct: 21 AEELKTQANDYFKAKDYENAIKFYSQA---IELNPS---------NAI---YYGNRSLAY 65
Query: 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129
L+ E Y + T+ +EL+ +K YRR+ +++ + A D + + + P+++
Sbjct: 66 LRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 125
Query: 130 KLVYME 135
K+ Y E
Sbjct: 126 KMKYQE 131
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
K+ GN F A + A K Y+ A ++ F Y N +AC +
Sbjct: 25 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF---------------YSNISACYISTG 69
Query: 74 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 116
D + TK LE++P + KAL RR+ A+ A D+
Sbjct: 70 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 112
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
K+ GN F A + A K Y+ A ++ F Y N +AC +
Sbjct: 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF---------------YSNISACYISTG 73
Query: 74 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 116
D + TK LE++P + KAL RR+ A+ A D+
Sbjct: 74 DLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 15/125 (12%)
Query: 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
E K N F+A Y A K Y +A ++ + +N + Y N + L
Sbjct: 7 EELKTQANDYFKAKDYENAIKFYSQAIEL------------NPSNAIY---YGNRSLAYL 51
Query: 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130
+ E Y T+ +EL+ +K YRR+ +++ + A D + + + P+++ K
Sbjct: 52 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111
Query: 131 LVYME 135
+ Y E
Sbjct: 112 MKYQE 116
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 16/90 (17%)
Query: 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE 73
K GN FR KY A K Y A ++ E Y N +AC + +
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKE----------------DPVFYSNLSACYVSVG 53
Query: 74 DYSETSSLCTKVLELEPLNVKALYRRSQAH 103
D + + TK LEL+P K L RR+ A+
Sbjct: 54 DLKKVVEMSTKALELKPDYSKVLLRRASAN 83
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117
R++ Y+ A D +E + K L+L+ N Y R Q + ++A D
Sbjct: 269 RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328
Query: 118 RALTIDPNN 126
+A +DP N
Sbjct: 329 KAKELDPEN 337
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123
NAA K +YS+ L T+ L + P N L R+ A+ + + EKA D + A +D
Sbjct: 18 GNAAMARK--EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75
Query: 124 P 124
P
Sbjct: 76 P 76
>pdb|3RL4|A Chain A, Rat Metallophosphodiesterase Mpped2 G252h Mutant
Length = 296
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 2 DTHEKIEACERKKHDGNLLFRAGKY--------------WRASKKYEKAAKIIEFHHSFT 47
DTH + + + G++L G + W + YE +I +H T
Sbjct: 67 DTHSRTDGIQMPY--GDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKI-VIAGNHELT 123
Query: 48 DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89
D++ A+ ++ Y + KLK ED+ SL T + L+
Sbjct: 124 FDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQ 165
>pdb|3RL3|A Chain A, Rat Metallophosphodiesterase Mpped2
Length = 296
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 17/102 (16%)
Query: 2 DTHEKIEACERKKHDGNLLFRAGKY--------------WRASKKYEKAAKIIEFHHSFT 47
DTH + + + G++L G + W + YE +I +H T
Sbjct: 67 DTHSRTDGIQMPY--GDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKI-VIAGNHELT 123
Query: 48 DDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89
D++ A+ ++ Y + KLK ED+ SL T + L+
Sbjct: 124 FDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQ 165
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
Y N AA KL + E + C K +E +P V+A R++ A + E A + A T
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 100
Query: 122 ID 123
D
Sbjct: 101 KD 102
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121
Y N AA KL + E + C K +E +P V+A R++ A + E A + A T
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235
Query: 122 ID 123
D
Sbjct: 236 KD 237
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLS 60
+ + E ER K +GN + + A Y KA ++ + AN +
Sbjct: 3 LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL------------NPANAVY-- 48
Query: 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120
+ N AA KL +Y+ C + + ++P KA R A ++ +A A K+AL
Sbjct: 49 -FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Query: 121 TIDPNNRVVK 130
+DP+N K
Sbjct: 108 ELDPDNETYK 117
>pdb|3RL5|A Chain A, Rat Metallophosphodiesterase Mpped2 H67r Mutant
Length = 296
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86
W + YE +I +H T D++ A+ ++ Y + KLK ED+ SL T +
Sbjct: 104 WLGNLPYEYKI-VIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSI 162
Query: 87 ELE 89
L+
Sbjct: 163 YLQ 165
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125
++++ Y L KV E P+N +R A ++A K AL + PN
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 116
+R Y + K YS+ L +V + + +V A++KT +++ +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 117 KRALTIDPNN----RVVKLVYMELK 137
+R+L P+N V+ L Y++++
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQ 90
>pdb|1NO7|A Chain A, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
pdb|1NO7|B Chain B, Structure Of The Large Protease Resistant Upper Domain Of
Vp5, The Major Capsid Protein Of Herpes Simplex Virus-1
Length = 604
Score = 26.9 bits (58), Expect = 4.8, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK 105
++ Y NN C + DYS S + T + P A+YR AH++
Sbjct: 202 ITSYWNNTRCAAFVNDYSLVSYVVTYLGGDLPEECMAVYRDLVAHVE 248
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 116
+R Y + K YS+ L +V + + +V A++KT +++ +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELL 65
Query: 117 KRALTIDPNN----RVVKLVYMELK 137
+R+L P+N V+ L Y++++
Sbjct: 66 ERSLADAPDNVKVATVLGLTYVQVQ 90
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 116
+R Y + K YSE + +V + + +V+ A++KT +++ +
Sbjct: 6 IRQVYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELL 65
Query: 117 KRALTIDPNN----RVVKLVYMELK 137
+R++ P+N V+ L Y++++
Sbjct: 66 ERSIADAPDNIKVATVLGLTYVQVQ 90
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 75 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN----RVVK 130
YS+ L +V + + +V A++KT +++ ++R+L P+N V+
Sbjct: 24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83
Query: 131 LVYMELK 137
L Y++++
Sbjct: 84 LTYVQVQ 90
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 75 YSETSSLCTKVLELEPLNVK-------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
Y + + K LE+EP N + +YR + + S + +++A+T++P+N
Sbjct: 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDNS 215
Query: 128 VVKLVYMELK----DKQREYAKYQAEIFGTMLSK 157
+K V++ LK + E KY EI + S+
Sbjct: 216 YIK-VFLALKLQDVHAEAEGEKYIEEILDQISSQ 248
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 75 YSETSSLCTKVLELEPLNVK-------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127
Y + + K LE+EP N + +YR + + S + +++A+T++P+N
Sbjct: 156 YQKAKAAFEKALEVEPDNPEFNIGYAITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDNS 215
Query: 128 VVKLVYMELK----DKQREYAKYQAEIFGTMLSK 157
+K V++ LK + E KY EI + S+
Sbjct: 216 YIK-VFLALKLQDVHAEAEGEKYIEEILDQISSQ 248
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL 70
E++K GN LF+ G Y A Y D+ A Y N A +
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCY---------------DQLITAQPQNPVGYSNKAMALI 49
Query: 71 KLEDYSETSSLCTKVL 86
KL +Y++ +C + L
Sbjct: 50 KLGEYTQAIQMCQQGL 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,474,362
Number of Sequences: 62578
Number of extensions: 157160
Number of successful extensions: 722
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 88
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)