Query 031461
Match_columns 159
No_of_seqs 135 out of 1605
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 14:26:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1.1E-28 2.4E-33 176.3 19.9 157 2-158 200-356 (397)
2 KOG0553 TPR repeat-containing 99.9 6.2E-24 1.3E-28 146.9 13.4 127 3-144 74-200 (304)
3 KOG0545 Aryl-hydrocarbon recep 99.9 3E-22 6.5E-27 135.2 17.2 156 1-156 169-328 (329)
4 KOG4234 TPR repeat-containing 99.9 5.3E-20 1.1E-24 121.2 16.1 140 6-155 91-230 (271)
5 PRK15359 type III secretion sy 99.8 3.9E-18 8.5E-23 110.0 13.6 116 12-142 26-141 (144)
6 KOG0547 Translocase of outer m 99.8 4.6E-18 1E-22 124.5 14.6 130 1-145 106-236 (606)
7 KOG0548 Molecular co-chaperone 99.8 3.2E-18 6.9E-23 126.2 12.8 117 9-140 357-473 (539)
8 PLN03088 SGT1, suppressor of 99.8 5.9E-18 1.3E-22 124.0 13.9 118 11-143 3-120 (356)
9 KOG0548 Molecular co-chaperone 99.8 9.5E-18 2.1E-22 123.8 12.0 113 10-137 2-114 (539)
10 KOG4648 Uncharacterized conser 99.7 3.3E-17 7.1E-22 116.1 11.1 118 6-138 93-210 (536)
11 PRK15363 pathogenicity island 99.7 4.1E-16 9E-21 100.0 12.9 117 9-140 34-150 (157)
12 KOG0550 Molecular chaperone (D 99.7 1.2E-16 2.6E-21 115.1 11.4 127 7-145 246-372 (486)
13 TIGR02552 LcrH_SycD type III s 99.7 7E-16 1.5E-20 98.3 13.5 116 10-140 17-132 (135)
14 TIGR00990 3a0801s09 mitochondr 99.7 4.3E-15 9.4E-20 116.1 17.7 110 1-126 118-227 (615)
15 KOG0551 Hsp90 co-chaperone CNS 99.7 4.8E-15 1.1E-19 104.3 14.6 108 8-126 79-186 (390)
16 PRK11189 lipoprotein NlpI; Pro 99.6 9.4E-15 2E-19 104.8 13.6 105 9-128 63-167 (296)
17 KOG4626 O-linked N-acetylgluco 99.6 2.6E-15 5.7E-20 113.3 10.5 131 10-156 252-382 (966)
18 TIGR00990 3a0801s09 mitochondr 99.6 3E-14 6.5E-19 111.4 15.1 137 9-145 330-485 (615)
19 TIGR02795 tol_pal_ybgF tol-pal 99.6 5.1E-14 1.1E-18 87.5 13.1 112 10-133 2-116 (119)
20 KOG4626 O-linked N-acetylgluco 99.6 1.9E-14 4.2E-19 108.7 12.3 115 10-139 388-502 (966)
21 PRK10370 formate-dependent nit 99.6 4.2E-14 9E-19 95.8 12.7 111 10-135 73-186 (198)
22 PRK02603 photosystem I assembl 99.6 1.7E-13 3.8E-18 90.9 14.0 117 5-133 30-161 (172)
23 PRK15359 type III secretion sy 99.5 2.3E-13 5.1E-18 87.7 11.7 104 31-153 14-117 (144)
24 PF13414 TPR_11: TPR repeat; P 99.5 4.2E-14 9.2E-19 79.9 7.2 66 59-124 3-69 (69)
25 KOG1155 Anaphase-promoting com 99.5 3.4E-13 7.3E-18 98.8 13.4 120 12-146 332-451 (559)
26 KOG4642 Chaperone-dependent E3 99.5 6.7E-14 1.4E-18 94.7 8.9 115 8-137 8-127 (284)
27 KOG0376 Serine-threonine phosp 99.5 4.7E-14 1E-18 103.6 8.4 122 9-145 3-124 (476)
28 KOG1173 Anaphase-promoting com 99.5 3.7E-13 8.1E-18 100.4 12.1 120 12-139 416-535 (611)
29 KOG1155 Anaphase-promoting com 99.5 1.6E-12 3.5E-17 95.3 14.8 125 15-155 369-493 (559)
30 PRK15331 chaperone protein Sic 99.5 9.9E-13 2.2E-17 84.9 12.0 117 9-141 36-152 (165)
31 CHL00033 ycf3 photosystem I as 99.5 3.4E-12 7.3E-17 84.4 14.6 108 7-126 32-153 (168)
32 PF12895 Apc3: Anaphase-promot 99.5 2E-13 4.3E-18 80.1 7.6 83 23-119 2-84 (84)
33 PF13429 TPR_15: Tetratricopep 99.5 2.5E-13 5.5E-18 96.7 9.4 133 10-158 146-278 (280)
34 PRK12370 invasion protein regu 99.5 1.4E-12 3E-17 100.9 14.1 119 12-145 340-459 (553)
35 PRK09782 bacteriophage N4 rece 99.5 2E-12 4.4E-17 104.9 15.5 115 11-140 610-724 (987)
36 PRK15179 Vi polysaccharide bio 99.5 2.4E-12 5.1E-17 101.1 15.3 130 10-155 86-215 (694)
37 PRK10370 formate-dependent nit 99.5 1.4E-12 3E-17 88.4 12.2 117 23-155 52-171 (198)
38 PF13432 TPR_16: Tetratricopep 99.5 2.7E-13 5.8E-18 75.7 7.3 64 64-127 2-65 (65)
39 KOG1126 DNA-binding cell divis 99.5 2.8E-13 6.1E-18 102.5 9.5 137 10-146 421-576 (638)
40 TIGR03302 OM_YfiO outer membra 99.5 7.7E-12 1.7E-16 86.8 15.7 114 9-134 32-156 (235)
41 cd00189 TPR Tetratricopeptide 99.5 9.6E-13 2.1E-17 77.4 9.6 99 12-125 2-100 (100)
42 KOG0624 dsRNA-activated protei 99.5 1.1E-12 2.4E-17 93.4 10.9 130 3-143 262-391 (504)
43 TIGR02521 type_IV_pilW type IV 99.5 7.5E-12 1.6E-16 85.6 14.8 135 9-143 30-185 (234)
44 KOG1126 DNA-binding cell divis 99.4 9.3E-13 2E-17 99.8 10.4 122 10-146 489-610 (638)
45 TIGR02521 type_IV_pilW type IV 99.4 1.8E-11 3.9E-16 83.7 16.1 136 10-145 65-221 (234)
46 PRK09782 bacteriophage N4 rece 99.4 7.7E-12 1.7E-16 101.6 16.0 115 24-155 590-704 (987)
47 PRK12370 invasion protein regu 99.4 4.2E-12 9.2E-17 98.3 14.0 106 23-143 317-422 (553)
48 KOG0624 dsRNA-activated protei 99.4 6.3E-12 1.4E-16 89.6 13.4 115 8-137 36-153 (504)
49 PRK11189 lipoprotein NlpI; Pro 99.4 5.7E-12 1.2E-16 90.5 13.3 113 23-146 39-151 (296)
50 COG3063 PilF Tfp pilus assembl 99.4 8.7E-12 1.9E-16 84.2 12.7 136 7-142 32-188 (250)
51 PRK10803 tol-pal system protei 99.4 1.5E-11 3.3E-16 86.5 14.6 114 11-136 143-260 (263)
52 PF13414 TPR_11: TPR repeat; P 99.4 1.5E-12 3.3E-17 73.4 7.6 66 10-90 3-69 (69)
53 KOG0547 Translocase of outer m 99.4 7.3E-12 1.6E-16 92.5 12.9 138 9-146 325-481 (606)
54 PRK15174 Vi polysaccharide exp 99.4 5.5E-12 1.2E-16 99.3 13.2 116 16-146 218-337 (656)
55 KOG2076 RNA polymerase III tra 99.4 2.7E-11 5.8E-16 94.7 16.2 133 10-158 139-271 (895)
56 PF13512 TPR_18: Tetratricopep 99.4 2.6E-11 5.7E-16 76.7 12.8 110 10-131 10-137 (142)
57 TIGR02552 LcrH_SycD type III s 99.4 1.4E-11 2.9E-16 78.4 11.7 102 31-147 4-105 (135)
58 PRK15174 Vi polysaccharide exp 99.4 2.7E-11 5.9E-16 95.4 15.6 121 11-146 247-371 (656)
59 TIGR03302 OM_YfiO outer membra 99.4 5.5E-11 1.2E-15 82.6 15.4 126 11-148 71-224 (235)
60 PRK15363 pathogenicity island 99.4 1.5E-11 3.3E-16 79.1 11.1 98 59-157 35-132 (157)
61 KOG1125 TPR repeat-containing 99.4 2.8E-12 6.1E-17 96.0 8.8 118 10-142 430-557 (579)
62 PF13525 YfiO: Outer membrane 99.4 1.3E-10 2.7E-15 79.2 16.1 128 9-148 4-148 (203)
63 TIGR02917 PEP_TPR_lipo putativ 99.4 1.9E-11 4.2E-16 98.1 14.0 128 11-155 771-898 (899)
64 COG3063 PilF Tfp pilus assembl 99.4 2.8E-11 6.1E-16 81.8 12.0 124 10-146 103-226 (250)
65 PRK11447 cellulose synthase su 99.4 7.3E-11 1.6E-15 98.2 16.5 127 10-137 303-429 (1157)
66 TIGR02917 PEP_TPR_lipo putativ 99.3 6.5E-11 1.4E-15 95.1 15.7 122 9-145 124-245 (899)
67 PF13371 TPR_9: Tetratricopept 99.3 9.3E-12 2E-16 70.9 8.0 71 66-136 2-72 (73)
68 PRK10866 outer membrane biogen 99.3 2E-10 4.3E-15 80.2 16.1 127 10-148 32-182 (243)
69 COG5010 TadD Flp pilus assembl 99.3 5.2E-11 1.1E-15 81.7 12.5 121 11-146 101-221 (257)
70 COG1729 Uncharacterized protei 99.3 8.7E-11 1.9E-15 81.4 13.5 114 11-136 142-258 (262)
71 KOG0546 HSP90 co-chaperone CPR 99.3 9.5E-12 2.1E-16 88.6 8.0 153 4-156 216-372 (372)
72 PRK11447 cellulose synthase su 99.3 5.3E-11 1.2E-15 99.1 13.5 125 15-155 274-412 (1157)
73 PF14559 TPR_19: Tetratricopep 99.3 1.1E-11 2.3E-16 69.7 6.7 67 70-136 2-68 (68)
74 PRK11788 tetratricopeptide rep 99.3 2.9E-10 6.3E-15 84.3 15.7 84 61-144 182-266 (389)
75 KOG0553 TPR repeat-containing 99.3 5.3E-11 1.1E-15 83.2 10.3 93 62-155 84-176 (304)
76 PRK11788 tetratricopeptide rep 99.3 2.7E-10 5.8E-15 84.5 14.8 110 13-138 183-293 (389)
77 PRK10049 pgaA outer membrane p 99.3 1.2E-10 2.5E-15 93.5 12.9 113 11-139 50-162 (765)
78 KOG0550 Molecular chaperone (D 99.2 3.1E-10 6.6E-15 82.5 12.3 142 10-155 203-348 (486)
79 KOG4162 Predicted calmodulin-b 99.2 1E-10 2.2E-15 90.3 10.5 104 10-128 684-789 (799)
80 PF13432 TPR_16: Tetratricopep 99.2 6.4E-11 1.4E-15 65.9 6.8 64 15-93 2-65 (65)
81 KOG1156 N-terminal acetyltrans 99.2 3.5E-10 7.7E-15 86.0 12.3 120 11-145 8-127 (700)
82 KOG4555 TPR repeat-containing 99.2 1.5E-09 3.2E-14 67.6 12.9 105 5-124 38-146 (175)
83 KOG2002 TPR-containing nuclear 99.2 5.4E-10 1.2E-14 88.3 13.6 119 11-141 271-390 (1018)
84 cd00189 TPR Tetratricopeptide 99.2 1.2E-09 2.7E-14 63.9 12.2 86 61-146 2-87 (100)
85 PF09976 TPR_21: Tetratricopep 99.2 6.6E-10 1.4E-14 71.7 11.6 128 6-146 7-137 (145)
86 PLN02789 farnesyltranstransfer 99.2 8.1E-10 1.8E-14 80.0 13.2 114 12-140 73-189 (320)
87 PF12688 TPR_5: Tetratrico pep 99.2 5.6E-10 1.2E-14 69.4 10.7 99 11-121 2-103 (120)
88 PRK10049 pgaA outer membrane p 99.2 8.6E-10 1.9E-14 88.5 13.4 111 11-136 360-470 (765)
89 COG4235 Cytochrome c biogenesi 99.2 1.4E-09 3E-14 76.4 12.3 112 10-136 156-270 (287)
90 PLN02789 farnesyltranstransfer 99.2 2.8E-09 6.1E-14 77.2 14.4 119 20-154 47-168 (320)
91 COG4785 NlpI Lipoprotein NlpI, 99.1 4.8E-10 1E-14 75.5 8.8 114 9-137 64-177 (297)
92 PRK14574 hmsH outer membrane p 99.1 1.8E-09 3.9E-14 86.6 13.3 121 9-129 33-172 (822)
93 COG4783 Putative Zn-dependent 99.1 3.4E-09 7.3E-14 78.5 13.5 122 12-148 308-429 (484)
94 KOG1840 Kinesin light chain [C 99.1 4.1E-09 9E-14 80.0 14.3 141 9-157 240-396 (508)
95 KOG1308 Hsp70-interacting prot 99.1 1.2E-10 2.7E-15 82.7 5.6 121 3-139 107-227 (377)
96 PLN03088 SGT1, suppressor of 99.1 1.6E-09 3.5E-14 79.7 11.7 91 62-153 5-95 (356)
97 PF14559 TPR_19: Tetratricopep 99.1 6.5E-10 1.4E-14 62.3 7.5 68 20-102 1-68 (68)
98 PF13424 TPR_12: Tetratricopep 99.1 3.4E-10 7.4E-15 65.3 6.4 66 57-122 3-75 (78)
99 KOG2003 TPR repeat-containing 99.1 7.2E-10 1.6E-14 82.0 9.2 118 12-144 492-609 (840)
100 PF13424 TPR_12: Tetratricopep 99.1 1.4E-09 3E-14 62.7 8.5 74 8-89 3-76 (78)
101 PF13371 TPR_9: Tetratricopept 99.1 1.5E-09 3.2E-14 61.7 7.8 70 17-101 2-71 (73)
102 COG2956 Predicted N-acetylgluc 99.1 1.1E-08 2.4E-13 72.6 13.6 89 59-147 180-269 (389)
103 TIGR02795 tol_pal_ybgF tol-pal 99.1 6.6E-09 1.4E-13 64.2 11.4 86 61-146 4-95 (119)
104 PRK15179 Vi polysaccharide bio 99.1 1.2E-08 2.6E-13 80.6 15.2 124 19-155 58-181 (694)
105 CHL00033 ycf3 photosystem I as 99.1 2.2E-09 4.8E-14 70.9 9.5 111 18-141 7-120 (168)
106 KOG1129 TPR repeat-containing 99.1 5.6E-10 1.2E-14 79.4 6.8 136 10-145 290-447 (478)
107 KOG2002 TPR-containing nuclear 99.1 1.2E-08 2.5E-13 81.0 14.4 123 6-142 303-429 (1018)
108 PF09976 TPR_21: Tetratricopep 99.0 4.2E-08 9.2E-13 63.3 14.8 98 10-120 48-145 (145)
109 KOG1125 TPR repeat-containing 99.0 1.2E-08 2.6E-13 76.9 13.2 142 7-148 316-519 (579)
110 KOG1173 Anaphase-promoting com 99.0 7.4E-09 1.6E-13 78.0 12.0 120 14-148 384-510 (611)
111 PF13429 TPR_15: Tetratricopep 99.0 4.8E-09 1E-13 74.8 10.6 120 14-146 114-233 (280)
112 PRK02603 photosystem I assembl 99.0 9E-09 1.9E-13 68.3 10.6 85 58-142 34-121 (172)
113 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 4E-09 8.7E-14 78.2 8.9 68 56-123 72-142 (453)
114 KOG3060 Uncharacterized conser 99.0 1.4E-07 3.1E-12 65.0 15.2 136 15-150 91-248 (289)
115 KOG3060 Uncharacterized conser 99.0 6.1E-08 1.3E-12 66.8 13.3 88 10-112 154-244 (289)
116 TIGR00540 hemY_coli hemY prote 99.0 7.9E-08 1.7E-12 72.1 15.4 125 6-145 80-205 (409)
117 PF12895 Apc3: Anaphase-promot 98.9 3.7E-09 8.1E-14 61.8 6.4 76 72-148 2-79 (84)
118 COG4783 Putative Zn-dependent 98.9 2.6E-08 5.5E-13 74.0 11.9 107 15-136 345-451 (484)
119 COG5010 TadD Flp pilus assembl 98.9 3.8E-08 8.3E-13 67.8 11.2 85 62-146 103-187 (257)
120 KOG1128 Uncharacterized conser 98.9 1.2E-08 2.7E-13 78.8 9.1 117 15-146 490-606 (777)
121 PF12569 NARP1: NMDA receptor- 98.9 9.7E-08 2.1E-12 73.2 13.9 87 59-145 194-280 (517)
122 KOG2076 RNA polymerase III tra 98.9 1.3E-07 2.8E-12 74.7 14.7 100 10-124 173-272 (895)
123 PRK14720 transcript cleavage f 98.9 1.4E-07 3E-12 76.0 14.9 114 10-140 31-163 (906)
124 KOG1840 Kinesin light chain [C 98.9 2.1E-07 4.5E-12 71.0 15.2 109 8-123 281-397 (508)
125 PRK10153 DNA-binding transcrip 98.9 2.2E-07 4.8E-12 71.5 15.5 118 10-128 339-488 (517)
126 PRK14574 hmsH outer membrane p 98.9 4.5E-08 9.7E-13 78.8 12.2 113 12-140 104-216 (822)
127 cd05804 StaR_like StaR_like; a 98.9 3.9E-08 8.4E-13 72.2 11.0 98 12-124 116-217 (355)
128 PF14938 SNAP: Soluble NSF att 98.9 7.3E-08 1.6E-12 68.9 12.0 137 8-154 112-256 (282)
129 COG4235 Cytochrome c biogenesi 98.9 1.8E-07 4E-12 65.9 13.6 115 26-156 138-255 (287)
130 PRK10747 putative protoheme IX 98.9 2.2E-07 4.7E-12 69.6 14.9 125 6-145 80-205 (398)
131 PF12968 DUF3856: Domain of Un 98.9 3.5E-07 7.5E-12 56.0 12.6 113 7-122 6-129 (144)
132 TIGR00540 hemY_coli hemY prote 98.8 2E-07 4.4E-12 70.0 14.2 130 9-153 262-395 (409)
133 PF06552 TOM20_plant: Plant sp 98.8 9.7E-08 2.1E-12 62.7 10.7 107 25-139 6-126 (186)
134 PF13525 YfiO: Outer membrane 98.8 7.7E-07 1.7E-11 60.6 15.7 123 10-144 42-195 (203)
135 KOG1174 Anaphase-promoting com 98.8 2E-07 4.3E-12 68.5 12.6 138 10-147 232-388 (564)
136 KOG1129 TPR repeat-containing 98.8 3E-08 6.5E-13 70.8 8.3 108 10-129 358-465 (478)
137 PRK15331 chaperone protein Sic 98.8 8.5E-08 1.8E-12 62.2 9.6 95 59-154 37-131 (165)
138 COG4105 ComL DNA uptake lipopr 98.8 1.4E-06 3.1E-11 60.3 16.1 125 9-145 33-171 (254)
139 PRK10803 tol-pal system protei 98.8 1.5E-07 3.3E-12 66.4 11.6 95 60-155 143-244 (263)
140 PF03704 BTAD: Bacterial trans 98.8 3.5E-06 7.5E-11 54.3 16.4 111 11-121 7-124 (146)
141 cd05804 StaR_like StaR_like; a 98.8 4E-07 8.7E-12 66.8 12.9 143 11-154 44-212 (355)
142 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 6.8E-08 1.5E-12 71.8 8.6 71 7-89 72-142 (453)
143 KOG4162 Predicted calmodulin-b 98.7 3.5E-07 7.7E-12 71.3 12.7 119 13-146 653-773 (799)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.6E-07 5.7E-12 68.5 11.6 58 62-119 237-294 (395)
145 COG2956 Predicted N-acetylgluc 98.7 1.1E-06 2.3E-11 62.7 14.0 110 6-130 176-286 (389)
146 KOG0543 FKBP-type peptidyl-pro 98.7 2.5E-07 5.4E-12 67.6 10.7 100 10-124 257-357 (397)
147 KOG1127 TPR repeat-containing 98.7 1.7E-07 3.6E-12 75.0 10.2 137 10-146 492-649 (1238)
148 COG1729 Uncharacterized protei 98.7 4.5E-07 9.8E-12 63.2 11.2 94 62-156 144-243 (262)
149 PF14938 SNAP: Soluble NSF att 98.7 4.3E-07 9.3E-12 65.0 11.2 105 9-123 74-185 (282)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 6.8E-07 1.5E-11 66.4 12.5 107 22-146 181-287 (395)
151 PF12688 TPR_5: Tetratrico pep 98.7 9.4E-07 2E-11 55.0 11.3 86 61-146 3-94 (120)
152 PRK10866 outer membrane biogen 98.7 2.5E-06 5.3E-11 59.8 14.7 116 10-137 69-219 (243)
153 KOG2003 TPR repeat-containing 98.7 1.2E-06 2.5E-11 65.4 13.3 132 9-140 557-707 (840)
154 KOG1310 WD40 repeat protein [G 98.7 2E-07 4.4E-12 70.3 9.3 120 4-138 368-490 (758)
155 PRK10747 putative protoheme IX 98.7 9.6E-07 2.1E-11 66.1 12.7 124 10-153 263-386 (398)
156 PF00515 TPR_1: Tetratricopept 98.6 7.4E-08 1.6E-12 46.3 4.3 32 94-125 2-33 (34)
157 PF13428 TPR_14: Tetratricopep 98.6 1.2E-07 2.5E-12 48.4 5.0 40 95-134 3-42 (44)
158 KOG1128 Uncharacterized conser 98.6 1.1E-06 2.3E-11 68.4 11.8 82 64-145 490-571 (777)
159 PF13431 TPR_17: Tetratricopep 98.6 4E-08 8.8E-13 47.2 2.8 33 81-113 1-33 (34)
160 KOG4648 Uncharacterized conser 98.6 2.3E-07 4.9E-12 66.8 7.5 92 62-154 100-191 (536)
161 PF07719 TPR_2: Tetratricopept 98.6 1.6E-07 3.5E-12 45.0 4.6 34 93-126 1-34 (34)
162 PF14853 Fis1_TPR_C: Fis1 C-te 98.6 7.1E-07 1.5E-11 47.2 7.1 49 94-142 2-50 (53)
163 PF13428 TPR_14: Tetratricopep 98.6 1.6E-07 3.6E-12 47.9 4.5 42 61-102 3-44 (44)
164 KOG0495 HAT repeat protein [RN 98.5 2.7E-06 5.8E-11 65.9 12.3 106 21-141 662-767 (913)
165 PF00515 TPR_1: Tetratricopept 98.5 1.8E-07 3.8E-12 44.9 4.0 33 60-92 2-34 (34)
166 PRK11906 transcriptional regul 98.5 1.3E-06 2.9E-11 65.2 10.2 89 24-127 318-406 (458)
167 PRK11906 transcriptional regul 98.5 4E-06 8.7E-11 62.7 12.4 118 14-143 259-388 (458)
168 PF13512 TPR_18: Tetratricopep 98.5 3.5E-06 7.6E-11 53.6 10.4 69 61-129 12-83 (142)
169 PRK14720 transcript cleavage f 98.5 2.5E-06 5.4E-11 69.0 11.8 112 11-138 117-268 (906)
170 PF04733 Coatomer_E: Coatomer 98.5 1.7E-06 3.6E-11 62.1 9.8 66 62-127 204-270 (290)
171 KOG0495 HAT repeat protein [RN 98.5 4.6E-06 9.9E-11 64.7 11.7 82 61-142 653-734 (913)
172 KOG1130 Predicted G-alpha GTPa 98.5 3.5E-07 7.5E-12 67.3 5.5 111 5-124 190-306 (639)
173 COG4700 Uncharacterized protei 98.4 3.1E-05 6.6E-10 51.6 13.6 117 10-141 89-207 (251)
174 KOG4234 TPR repeat-containing 98.4 5.8E-06 1.2E-10 55.5 10.3 94 62-156 98-196 (271)
175 KOG1156 N-terminal acetyltrans 98.4 5.8E-06 1.3E-10 63.7 11.5 116 10-140 41-156 (700)
176 KOG4507 Uncharacterized conser 98.4 1E-06 2.2E-11 67.3 7.2 111 14-138 611-721 (886)
177 PF04733 Coatomer_E: Coatomer 98.4 1E-05 2.2E-10 58.1 12.1 111 16-143 137-251 (290)
178 PRK10941 hypothetical protein; 98.4 7E-06 1.5E-10 58.1 10.9 83 55-137 177-259 (269)
179 KOG4642 Chaperone-dependent E3 98.4 1.9E-06 4.1E-11 59.1 6.5 87 62-148 13-99 (284)
180 KOG1174 Anaphase-promoting com 98.3 6.1E-06 1.3E-10 60.9 9.1 107 13-134 303-409 (564)
181 PF07719 TPR_2: Tetratricopept 98.3 1.4E-06 3.1E-11 41.6 4.2 33 60-92 2-34 (34)
182 COG4785 NlpI Lipoprotein NlpI, 98.3 5.4E-06 1.2E-10 56.4 7.0 76 56-131 62-137 (297)
183 PF15015 NYD-SP12_N: Spermatog 98.2 3E-05 6.5E-10 57.4 10.9 111 10-120 176-289 (569)
184 KOG1127 TPR repeat-containing 98.2 1E-05 2.2E-10 65.2 9.1 112 13-139 565-676 (1238)
185 COG2976 Uncharacterized protei 98.2 7.2E-05 1.6E-09 50.0 11.6 103 12-127 91-193 (207)
186 KOG2796 Uncharacterized conser 98.2 4.8E-05 1E-09 53.3 11.2 107 11-126 213-319 (366)
187 PF13181 TPR_8: Tetratricopept 98.2 3.2E-06 7E-11 40.3 3.8 32 94-125 2-33 (34)
188 COG3071 HemY Uncharacterized e 98.1 0.00043 9.4E-09 50.9 14.8 125 6-145 80-205 (400)
189 KOG3364 Membrane protein invol 98.1 5.8E-05 1.3E-09 47.4 9.0 84 59-142 32-120 (149)
190 KOG4555 TPR repeat-containing 98.1 9.1E-05 2E-09 46.5 9.7 65 62-126 46-110 (175)
191 KOG3785 Uncharacterized conser 98.1 3.9E-05 8.5E-10 55.9 9.1 71 65-135 157-227 (557)
192 KOG4814 Uncharacterized conser 98.1 0.00013 2.7E-09 56.8 12.1 106 8-122 352-457 (872)
193 KOG1941 Acetylcholine receptor 98.1 6.9E-05 1.5E-09 54.7 9.5 103 11-122 123-235 (518)
194 KOG1130 Predicted G-alpha GTPa 98.0 6.7E-05 1.5E-09 55.7 9.3 102 12-122 237-344 (639)
195 KOG3824 Huntingtin interacting 98.0 7.8E-05 1.7E-09 53.4 9.3 76 62-137 119-194 (472)
196 KOG3785 Uncharacterized conser 98.0 8.5E-05 1.8E-09 54.2 9.5 87 19-119 31-117 (557)
197 PF13181 TPR_8: Tetratricopept 98.0 9.8E-06 2.1E-10 38.6 3.4 33 60-92 2-34 (34)
198 KOG4151 Myosin assembly protei 98.0 6.2E-05 1.3E-09 59.4 9.3 123 7-140 50-174 (748)
199 KOG2376 Signal recognition par 98.0 0.00042 9.1E-09 53.4 13.3 117 12-128 112-259 (652)
200 KOG1586 Protein required for f 98.0 0.0015 3.2E-08 45.2 14.5 105 14-127 117-229 (288)
201 PF08631 SPO22: Meiosis protei 98.0 0.002 4.2E-08 46.2 15.9 123 1-124 26-152 (278)
202 KOG2376 Signal recognition par 98.0 0.00035 7.7E-09 53.8 12.5 117 11-130 13-147 (652)
203 PF12569 NARP1: NMDA receptor- 98.0 0.00036 7.8E-09 54.0 12.5 103 9-126 3-110 (517)
204 PF13174 TPR_6: Tetratricopept 97.9 2.3E-05 5E-10 36.9 3.9 31 95-125 2-32 (33)
205 PRK10153 DNA-binding transcrip 97.9 7.8E-05 1.7E-09 57.7 8.6 68 11-94 421-488 (517)
206 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00025 5.5E-09 51.1 10.2 84 59-142 81-168 (390)
207 KOG1586 Protein required for f 97.9 0.0025 5.3E-08 44.1 14.4 107 9-125 33-146 (288)
208 COG4105 ComL DNA uptake lipopr 97.9 0.00011 2.5E-09 51.1 8.2 71 59-129 34-107 (254)
209 PF13431 TPR_17: Tetratricopep 97.9 4.9E-06 1.1E-10 39.9 1.0 33 32-79 1-33 (34)
210 PF09986 DUF2225: Uncharacteri 97.9 0.00088 1.9E-08 46.1 12.4 100 19-126 86-198 (214)
211 PF10300 DUF3808: Protein of u 97.9 0.00016 3.5E-09 55.4 9.7 99 13-123 270-377 (468)
212 KOG2053 Mitochondrial inherita 97.9 0.0006 1.3E-08 54.8 12.6 114 18-147 17-130 (932)
213 PLN03081 pentatricopeptide (PP 97.9 0.00048 1.1E-08 55.4 12.5 63 60-122 495-557 (697)
214 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 9.9E-05 2.1E-09 39.0 5.7 40 61-100 3-42 (53)
215 PF06552 TOM20_plant: Plant sp 97.8 0.00045 9.8E-09 45.7 9.8 72 75-146 7-88 (186)
216 PF04781 DUF627: Protein of un 97.8 0.00082 1.8E-08 40.9 9.9 103 16-123 2-108 (111)
217 KOG1585 Protein required for f 97.8 0.00088 1.9E-08 46.6 11.0 131 15-156 115-251 (308)
218 KOG1941 Acetylcholine receptor 97.8 0.00034 7.3E-09 51.2 9.1 109 10-123 162-276 (518)
219 PLN03081 pentatricopeptide (PP 97.7 0.0012 2.7E-08 53.0 12.9 84 61-146 464-547 (697)
220 PF13176 TPR_7: Tetratricopept 97.7 6.5E-05 1.4E-09 36.4 3.6 25 96-120 2-26 (36)
221 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0048 1E-07 41.0 14.6 58 68-125 139-199 (291)
222 KOG2471 TPR repeat-containing 97.7 0.00025 5.5E-09 53.7 7.6 123 11-139 241-381 (696)
223 KOG4340 Uncharacterized conser 97.7 0.00016 3.4E-09 51.7 6.1 93 10-117 144-265 (459)
224 PLN03077 Protein ECB2; Provisi 97.7 0.0028 6E-08 52.3 14.2 132 12-145 556-709 (857)
225 COG0457 NrfG FOG: TPR repeat [ 97.7 0.0062 1.3E-07 40.5 13.9 107 19-137 139-246 (291)
226 smart00028 TPR Tetratricopepti 97.7 0.00013 2.8E-09 33.4 4.0 31 95-125 3-33 (34)
227 KOG4340 Uncharacterized conser 97.7 0.00061 1.3E-08 48.8 8.7 85 21-120 21-105 (459)
228 COG3071 HemY Uncharacterized e 97.7 0.00061 1.3E-08 50.1 8.9 97 10-124 263-359 (400)
229 PF13176 TPR_7: Tetratricopept 97.6 8.4E-05 1.8E-09 36.0 3.1 28 62-89 2-29 (36)
230 PF13174 TPR_6: Tetratricopept 97.6 8.7E-05 1.9E-09 34.8 3.1 32 61-92 2-33 (33)
231 KOG0545 Aryl-hydrocarbon recep 97.6 0.001 2.2E-08 46.3 9.2 81 59-139 178-276 (329)
232 COG4976 Predicted methyltransf 97.6 0.00014 2.9E-09 50.0 4.9 60 68-127 4-63 (287)
233 COG3118 Thioredoxin domain-con 97.6 0.0089 1.9E-07 42.7 13.9 116 11-141 135-286 (304)
234 PF05843 Suf: Suppressor of fo 97.6 0.0041 8.8E-08 44.6 12.5 110 17-141 8-121 (280)
235 KOG0376 Serine-threonine phosp 97.6 8.3E-05 1.8E-09 55.8 3.9 84 62-145 7-90 (476)
236 KOG3081 Vesicle coat complex C 97.6 0.0078 1.7E-07 42.4 13.0 66 62-127 210-276 (299)
237 PLN03218 maturation of RBCL 1; 97.6 0.012 2.5E-07 49.7 16.4 93 15-122 512-608 (1060)
238 PRK04841 transcriptional regul 97.6 0.0032 6.9E-08 52.0 13.2 101 13-122 494-602 (903)
239 PLN03218 maturation of RBCL 1; 97.6 0.012 2.6E-07 49.6 16.2 96 13-121 545-642 (1060)
240 PF10602 RPN7: 26S proteasome 97.5 0.0023 5E-08 42.7 10.0 103 10-124 36-144 (177)
241 KOG2396 HAT (Half-A-TPR) repea 97.5 0.0044 9.5E-08 47.2 12.2 81 60-140 106-187 (568)
242 PF10579 Rapsyn_N: Rapsyn N-te 97.5 0.001 2.2E-08 37.9 6.7 68 9-88 5-72 (80)
243 smart00028 TPR Tetratricopepti 97.5 0.00027 5.9E-09 32.2 3.8 31 61-91 3-33 (34)
244 PLN03077 Protein ECB2; Provisi 97.5 0.0073 1.6E-07 49.8 14.1 91 14-121 629-719 (857)
245 KOG3081 Vesicle coat complex C 97.5 0.0064 1.4E-07 42.9 11.5 116 11-143 138-257 (299)
246 KOG1585 Protein required for f 97.5 0.018 3.8E-07 40.3 14.7 126 12-146 33-169 (308)
247 COG2912 Uncharacterized conser 97.4 0.0019 4.2E-08 45.5 9.0 81 56-136 178-258 (269)
248 PRK04841 transcriptional regul 97.4 0.0046 9.9E-08 51.1 12.1 103 10-122 452-560 (903)
249 PF14561 TPR_20: Tetratricopep 97.4 0.005 1.1E-07 36.4 9.1 67 79-145 8-76 (90)
250 PRK10941 hypothetical protein; 97.4 0.0031 6.7E-08 44.9 9.5 80 9-103 180-259 (269)
251 KOG3824 Huntingtin interacting 97.4 0.0007 1.5E-08 48.7 6.1 81 7-102 113-193 (472)
252 KOG4507 Uncharacterized conser 97.4 0.003 6.5E-08 49.1 9.8 93 21-126 224-316 (886)
253 PF03704 BTAD: Bacterial trans 97.3 0.015 3.2E-07 37.3 11.6 90 64-154 11-122 (146)
254 PF05843 Suf: Suppressor of fo 97.3 0.014 3E-07 41.9 12.0 104 13-131 38-145 (280)
255 KOG1915 Cell cycle control pro 97.3 0.026 5.6E-07 43.2 13.6 60 67-126 445-504 (677)
256 KOG2796 Uncharacterized conser 97.2 0.017 3.6E-07 41.0 11.4 117 13-143 180-302 (366)
257 PF10952 DUF2753: Protein of u 97.2 0.0063 1.4E-07 37.7 8.2 117 12-135 3-124 (140)
258 KOG2610 Uncharacterized conser 97.2 0.02 4.4E-07 41.9 11.8 121 16-151 109-233 (491)
259 COG4700 Uncharacterized protei 97.1 0.037 8E-07 37.3 12.6 96 11-120 125-220 (251)
260 KOG2471 TPR repeat-containing 97.1 0.00071 1.5E-08 51.4 4.3 93 14-106 287-382 (696)
261 PF12862 Apc5: Anaphase-promot 97.1 0.0073 1.6E-07 35.9 7.6 65 19-89 7-71 (94)
262 KOG1070 rRNA processing protei 97.0 0.024 5.1E-07 48.4 12.3 112 17-143 1537-1650(1710)
263 PF02259 FAT: FAT domain; Int 97.0 0.052 1.1E-06 39.8 13.2 116 10-125 184-341 (352)
264 KOG1915 Cell cycle control pro 97.0 0.061 1.3E-06 41.2 13.1 103 21-139 84-186 (677)
265 PF10300 DUF3808: Protein of u 96.9 0.031 6.8E-07 43.1 11.8 68 61-128 269-340 (468)
266 PF08631 SPO22: Meiosis protei 96.9 0.082 1.8E-06 37.9 13.4 112 20-139 3-133 (278)
267 PF09613 HrpB1_HrpK: Bacterial 96.9 0.037 8E-07 36.2 10.2 82 62-143 13-94 (160)
268 KOG1308 Hsp70-interacting prot 96.9 0.00031 6.7E-09 50.8 0.6 78 66-143 121-198 (377)
269 COG3629 DnrI DNA-binding trans 96.9 0.054 1.2E-06 38.8 11.6 102 17-122 110-216 (280)
270 PF13374 TPR_10: Tetratricopep 96.9 0.0025 5.4E-08 31.4 3.7 29 60-88 3-31 (42)
271 PF09613 HrpB1_HrpK: Bacterial 96.8 0.063 1.4E-06 35.1 13.7 114 9-139 9-122 (160)
272 PF04184 ST7: ST7 protein; In 96.8 0.029 6.2E-07 43.0 10.1 106 14-132 263-385 (539)
273 PF07079 DUF1347: Protein of u 96.8 0.15 3.3E-06 38.9 13.6 77 65-142 468-545 (549)
274 KOG2053 Mitochondrial inherita 96.7 0.04 8.6E-07 44.9 11.0 97 16-128 49-145 (932)
275 PRK13184 pknD serine/threonine 96.7 0.029 6.3E-07 46.6 10.4 117 13-142 478-601 (932)
276 PF06957 COPI_C: Coatomer (COP 96.7 0.075 1.6E-06 40.3 11.6 120 10-129 204-336 (422)
277 KOG3364 Membrane protein invol 96.7 0.03 6.5E-07 35.5 8.0 74 12-98 34-110 (149)
278 PF09986 DUF2225: Uncharacteri 96.6 0.035 7.6E-07 38.3 9.2 85 8-101 116-208 (214)
279 KOG2610 Uncharacterized conser 96.6 0.021 4.5E-07 41.9 7.9 90 18-118 145-234 (491)
280 PF02259 FAT: FAT domain; Int 96.5 0.21 4.5E-06 36.6 13.7 126 8-144 144-309 (352)
281 COG4976 Predicted methyltransf 96.4 0.0054 1.2E-07 42.4 4.1 59 19-92 4-62 (287)
282 PF13374 TPR_10: Tetratricopep 96.4 0.0091 2E-07 29.2 4.1 30 93-122 2-31 (42)
283 PF10516 SHNi-TPR: SHNi-TPR; 96.4 0.0089 1.9E-07 29.2 3.6 29 94-122 2-30 (38)
284 PF12862 Apc5: Anaphase-promot 96.3 0.095 2E-06 31.1 8.8 56 69-124 8-72 (94)
285 PF07720 TPR_3: Tetratricopept 96.2 0.023 5E-07 27.4 4.6 33 94-126 2-36 (36)
286 KOG1070 rRNA processing protei 96.2 0.29 6.2E-06 42.3 13.3 78 60-137 1531-1610(1710)
287 KOG4814 Uncharacterized conser 96.2 0.057 1.2E-06 42.7 8.9 76 60-135 355-436 (872)
288 COG3947 Response regulator con 96.1 0.17 3.7E-06 36.5 10.1 92 28-119 242-339 (361)
289 COG5191 Uncharacterized conser 96.1 0.013 2.9E-07 42.3 4.6 78 60-137 108-186 (435)
290 KOG2300 Uncharacterized conser 96.1 0.48 1E-05 36.6 12.8 100 9-123 366-475 (629)
291 PF04184 ST7: ST7 protein; In 96.0 0.44 9.6E-06 36.8 12.4 96 25-120 215-322 (539)
292 COG2976 Uncharacterized protei 95.9 0.31 6.7E-06 33.0 13.5 139 16-156 37-187 (207)
293 COG2912 Uncharacterized conser 95.9 0.13 2.9E-06 36.5 8.8 78 11-103 182-259 (269)
294 PF10345 Cohesin_load: Cohesin 95.7 0.82 1.8E-05 36.6 15.0 120 8-137 57-185 (608)
295 PF10255 Paf67: RNA polymerase 95.7 0.18 3.8E-06 38.1 9.4 134 17-157 129-266 (404)
296 KOG0686 COP9 signalosome, subu 95.6 0.11 2.3E-06 39.1 7.8 97 12-120 152-256 (466)
297 PF11817 Foie-gras_1: Foie gra 95.6 0.33 7.2E-06 34.2 10.1 87 25-120 153-245 (247)
298 PF10516 SHNi-TPR: SHNi-TPR; 95.5 0.031 6.8E-07 27.3 3.4 31 11-41 2-32 (38)
299 PF14561 TPR_20: Tetratricopep 95.5 0.24 5.3E-06 29.1 9.0 66 29-109 7-74 (90)
300 PF07721 TPR_4: Tetratricopept 95.5 0.028 6E-07 24.8 2.9 24 94-117 2-25 (26)
301 KOG2581 26S proteasome regulat 95.4 0.85 1.8E-05 34.5 12.5 70 58-127 208-281 (493)
302 TIGR02561 HrpB1_HrpK type III 95.3 0.44 9.4E-06 30.9 9.2 80 64-143 15-94 (153)
303 PF10373 EST1_DNA_bind: Est1 D 95.3 0.16 3.5E-06 36.0 7.9 62 78-139 1-62 (278)
304 PF12968 DUF3856: Domain of Un 95.3 0.38 8.3E-06 30.0 9.7 75 10-88 55-129 (144)
305 PF07079 DUF1347: Protein of u 95.2 0.34 7.4E-06 37.1 9.3 61 9-85 461-521 (549)
306 TIGR02561 HrpB1_HrpK type III 95.2 0.49 1.1E-05 30.7 10.1 85 10-109 10-94 (153)
307 KOG0292 Vesicle coat complex C 95.0 0.67 1.4E-05 38.4 10.9 127 7-133 988-1124(1202)
308 PF04910 Tcf25: Transcriptiona 94.9 1.2 2.5E-05 33.4 11.4 111 10-121 40-167 (360)
309 PF10373 EST1_DNA_bind: Est1 D 94.9 0.16 3.5E-06 36.0 6.8 62 29-105 1-62 (278)
310 PHA02537 M terminase endonucle 94.7 0.41 8.9E-06 33.4 8.2 118 21-142 94-226 (230)
311 PF11817 Foie-gras_1: Foie gra 94.7 0.52 1.1E-05 33.2 8.9 68 10-86 178-245 (247)
312 KOG2047 mRNA splicing factor [ 94.3 2.3 4.9E-05 34.3 13.6 124 8-134 423-554 (835)
313 COG4455 ImpE Protein of avirul 94.3 0.82 1.8E-05 31.8 8.7 60 69-128 11-70 (273)
314 PF10345 Cohesin_load: Cohesin 94.3 2.3 4.9E-05 34.2 16.9 105 13-117 304-428 (608)
315 PF14863 Alkyl_sulf_dimr: Alky 94.3 0.36 7.8E-06 31.0 6.7 53 92-144 69-121 (141)
316 KOG3617 WD40 and TPR repeat-co 94.3 0.4 8.6E-06 39.6 8.2 109 12-122 860-996 (1416)
317 TIGR03504 FimV_Cterm FimV C-te 94.3 0.3 6.5E-06 24.6 5.0 23 98-120 4-26 (44)
318 KOG2300 Uncharacterized conser 94.2 2 4.4E-05 33.4 14.3 102 8-117 44-151 (629)
319 PF04910 Tcf25: Transcriptiona 94.1 0.92 2E-05 33.9 9.5 99 13-125 106-225 (360)
320 PF10255 Paf67: RNA polymerase 94.1 0.15 3.2E-06 38.5 5.2 61 62-122 125-193 (404)
321 PF08424 NRDE-2: NRDE-2, neces 94.0 1.8 3.9E-05 31.8 11.4 64 74-137 46-109 (321)
322 PF13281 DUF4071: Domain of un 93.8 1.3 2.9E-05 33.2 9.7 65 62-126 182-259 (374)
323 KOG2047 mRNA splicing factor [ 93.8 3 6.6E-05 33.6 13.3 124 20-155 357-504 (835)
324 PF11207 DUF2989: Protein of u 93.7 0.29 6.3E-06 33.3 5.7 61 9-81 140-200 (203)
325 cd02682 MIT_AAA_Arch MIT: doma 93.7 0.72 1.6E-05 26.2 7.5 32 9-40 5-36 (75)
326 KOG1550 Extracellular protein 93.6 3 6.6E-05 33.1 12.0 92 13-123 291-394 (552)
327 TIGR03504 FimV_Cterm FimV C-te 93.6 0.18 3.9E-06 25.5 3.4 28 62-89 2-29 (44)
328 PF07721 TPR_4: Tetratricopept 93.5 0.14 3E-06 22.5 2.8 23 61-83 3-25 (26)
329 PF07720 TPR_3: Tetratricopept 93.5 0.42 9E-06 22.9 4.5 31 11-41 2-34 (36)
330 COG2909 MalT ATP-dependent tra 93.2 2.7 5.8E-05 34.9 11.0 92 8-109 456-553 (894)
331 KOG2041 WD40 repeat protein [G 93.1 1 2.2E-05 36.6 8.5 51 64-118 827-877 (1189)
332 PF04212 MIT: MIT (microtubule 93.0 0.47 1E-05 26.3 5.1 34 8-41 3-36 (69)
333 COG3898 Uncharacterized membra 92.8 3.4 7.3E-05 31.4 11.7 61 72-133 242-302 (531)
334 PF11846 DUF3366: Domain of un 92.6 1.5 3.2E-05 29.5 8.0 54 72-126 124-177 (193)
335 COG3914 Spy Predicted O-linked 92.6 2.9 6.2E-05 33.2 10.1 78 59-136 101-185 (620)
336 KOG1550 Extracellular protein 92.4 3.2 7E-05 33.0 10.6 99 12-122 246-357 (552)
337 COG3118 Thioredoxin domain-con 92.3 1 2.2E-05 32.6 7.0 56 63-118 138-193 (304)
338 PF09670 Cas_Cas02710: CRISPR- 92.0 4.2 9.1E-05 30.7 10.6 66 9-87 130-197 (379)
339 PF11207 DUF2989: Protein of u 92.0 1.1 2.4E-05 30.6 6.6 73 70-143 117-194 (203)
340 cd02680 MIT_calpain7_2 MIT: do 92.0 0.56 1.2E-05 26.6 4.4 35 8-42 4-38 (75)
341 cd02684 MIT_2 MIT: domain cont 91.9 0.53 1.1E-05 26.7 4.3 35 7-41 3-37 (75)
342 COG3914 Spy Predicted O-linked 91.8 4.3 9.4E-05 32.3 10.2 72 65-136 73-145 (620)
343 KOG0985 Vesicle coat protein c 91.8 4.5 9.8E-05 34.6 10.7 105 13-140 1197-1326(1666)
344 cd02681 MIT_calpain7_1 MIT: do 91.5 1.6 3.5E-05 24.8 7.6 33 9-41 5-37 (76)
345 KOG3617 WD40 and TPR repeat-co 91.4 2 4.3E-05 35.8 8.3 77 18-119 808-884 (1416)
346 cd02683 MIT_1 MIT: domain cont 91.4 0.72 1.6E-05 26.3 4.5 33 9-41 5-37 (77)
347 PF04781 DUF627: Protein of un 91.4 2.2 4.7E-05 26.2 10.0 72 65-136 2-87 (111)
348 PRK15180 Vi polysaccharide bio 91.4 2.3 5.1E-05 33.2 8.3 93 20-127 299-391 (831)
349 KOG0530 Protein farnesyltransf 91.3 2.9 6.3E-05 30.0 8.1 71 71-141 55-126 (318)
350 cd02678 MIT_VPS4 MIT: domain c 91.2 0.89 1.9E-05 25.7 4.8 35 7-41 3-37 (75)
351 smart00386 HAT HAT (Half-A-TPR 91.1 0.69 1.5E-05 20.7 3.7 27 74-100 2-28 (33)
352 cd02679 MIT_spastin MIT: domai 90.9 1.9 4.2E-05 24.7 8.1 62 8-69 6-73 (79)
353 KOG3783 Uncharacterized conser 90.9 4.5 9.8E-05 31.8 9.5 66 61-126 451-524 (546)
354 COG3898 Uncharacterized membra 90.9 5.8 0.00013 30.2 10.5 90 14-120 124-215 (531)
355 KOG1310 WD40 repeat protein [G 90.8 2.6 5.7E-05 33.2 8.2 82 66-147 381-465 (758)
356 PF14863 Alkyl_sulf_dimr: Alky 90.6 1.4 3.1E-05 28.3 5.8 51 61-111 72-122 (141)
357 KOG0890 Protein kinase of the 90.1 5.1 0.00011 37.0 10.2 96 15-127 1388-1483(2382)
358 PF10602 RPN7: 26S proteasome 89.9 4.3 9.2E-05 27.1 12.4 64 59-122 36-102 (177)
359 COG3947 Response regulator con 89.7 2.2 4.7E-05 31.1 6.5 52 94-145 280-331 (361)
360 KOG1839 Uncharacterized protei 89.7 2.8 6.1E-05 36.2 8.1 108 9-123 972-1087(1236)
361 COG2909 MalT ATP-dependent tra 89.6 11 0.00024 31.5 16.4 107 10-122 415-526 (894)
362 PRK13184 pknD serine/threonine 89.5 7.7 0.00017 33.0 10.5 66 62-129 555-627 (932)
363 smart00745 MIT Microtubule Int 89.4 1.6 3.4E-05 24.7 4.9 35 7-41 5-39 (77)
364 cd02656 MIT MIT: domain contai 89.4 1.6 3.4E-05 24.5 4.9 34 8-41 4-37 (75)
365 PRK15180 Vi polysaccharide bio 89.1 1.5 3.3E-05 34.1 5.8 94 17-125 330-423 (831)
366 COG5159 RPN6 26S proteasome re 89.0 6.2 0.00013 28.8 8.4 26 14-39 7-32 (421)
367 COG4941 Predicted RNA polymera 89.0 7.4 0.00016 29.0 8.9 75 62-136 332-408 (415)
368 KOG2396 HAT (Half-A-TPR) repea 89.0 4.3 9.2E-05 31.8 8.0 62 22-98 117-179 (568)
369 smart00386 HAT HAT (Half-A-TPR 88.9 1.3 2.8E-05 19.7 4.3 30 107-136 1-30 (33)
370 PF08424 NRDE-2: NRDE-2, neces 88.8 6.6 0.00014 28.9 8.9 62 80-141 6-79 (321)
371 KOG2422 Uncharacterized conser 88.7 10 0.00023 30.3 10.0 114 23-139 251-389 (665)
372 PF00244 14-3-3: 14-3-3 protei 88.2 3.3 7.2E-05 29.1 6.7 55 26-87 142-197 (236)
373 cd02677 MIT_SNX15 MIT: domain 88.2 1.9 4.2E-05 24.4 4.6 35 8-42 4-38 (75)
374 PF15015 NYD-SP12_N: Spermatog 87.9 11 0.00023 29.1 11.5 51 98-148 233-283 (569)
375 COG3629 DnrI DNA-binding trans 87.8 4.4 9.6E-05 29.3 7.2 65 91-156 151-215 (280)
376 KOG1839 Uncharacterized protei 87.5 7.5 0.00016 33.8 9.2 106 9-122 931-1044(1236)
377 KOG1914 mRNA cleavage and poly 87.2 7.8 0.00017 30.7 8.5 68 53-121 14-81 (656)
378 COG5191 Uncharacterized conser 87.0 2.9 6.4E-05 30.8 5.9 69 15-98 112-181 (435)
379 COG0790 FOG: TPR repeat, SEL1 87.0 9.1 0.0002 27.4 13.2 105 12-134 111-230 (292)
380 KOG0530 Protein farnesyltransf 87.0 9.4 0.0002 27.5 11.4 104 24-142 57-162 (318)
381 PF08311 Mad3_BUB1_I: Mad3/BUB 86.5 6.1 0.00013 24.8 9.1 85 24-120 40-126 (126)
382 PF01535 PPR: PPR repeat; Int 86.4 1.4 3E-05 19.4 2.9 26 62-87 3-28 (31)
383 cd02682 MIT_AAA_Arch MIT: doma 86.3 4.4 9.6E-05 23.0 7.9 19 112-130 32-50 (75)
384 PF15469 Sec5: Exocyst complex 86.2 7.8 0.00017 25.9 7.5 25 19-43 95-119 (182)
385 PF12739 TRAPPC-Trs85: ER-Golg 86.2 13 0.00029 28.4 10.3 102 12-122 210-329 (414)
386 PF12854 PPR_1: PPR repeat 85.4 2.6 5.7E-05 19.6 4.0 27 92-118 6-32 (34)
387 KOG1463 26S proteasome regulat 85.3 14 0.00029 27.7 12.2 99 57-156 126-230 (411)
388 KOG2422 Uncharacterized conser 85.2 18 0.00039 29.1 10.8 109 10-119 284-404 (665)
389 PF02064 MAS20: MAS20 protein 84.5 5.3 0.00012 25.0 5.5 38 97-134 67-104 (121)
390 PF04212 MIT: MIT (microtubule 84.4 5 0.00011 22.0 5.2 22 99-120 11-32 (69)
391 PF04053 Coatomer_WDAD: Coatom 84.0 12 0.00026 29.1 8.3 55 61-115 349-411 (443)
392 KOG2041 WD40 repeat protein [G 83.9 4.3 9.2E-05 33.3 5.9 70 56-137 793-862 (1189)
393 KOG1464 COP9 signalosome, subu 83.9 6 0.00013 28.7 6.1 52 71-122 39-94 (440)
394 PF05053 Menin: Menin; InterP 83.7 21 0.00045 28.6 12.1 51 90-140 315-371 (618)
395 KOG2114 Vacuolar assembly/sort 82.9 18 0.00038 30.4 9.0 33 9-41 367-399 (933)
396 KOG1258 mRNA processing protei 82.4 24 0.00052 28.3 12.6 101 13-128 300-401 (577)
397 KOG1464 COP9 signalosome, subu 82.3 4.7 0.0001 29.2 5.2 54 22-86 39-92 (440)
398 PF07219 HemY_N: HemY protein 81.7 5.9 0.00013 24.0 5.0 34 6-39 55-88 (108)
399 KOG0529 Protein geranylgeranyl 81.2 22 0.00048 27.2 10.6 78 62-139 112-195 (421)
400 PF13281 DUF4071: Domain of un 81.0 22 0.00047 27.0 14.5 83 60-142 142-232 (374)
401 KOG1497 COP9 signalosome, subu 80.3 22 0.00047 26.5 13.0 109 2-120 97-211 (399)
402 TIGR00756 PPR pentatricopeptid 80.3 4.1 8.9E-05 18.2 3.4 26 62-87 3-28 (35)
403 PF04053 Coatomer_WDAD: Coatom 80.0 26 0.00056 27.2 9.6 79 11-117 348-426 (443)
404 smart00101 14_3_3 14-3-3 homol 79.9 12 0.00027 26.4 6.6 54 26-87 144-199 (244)
405 KOG1463 26S proteasome regulat 79.2 25 0.00053 26.4 10.9 120 9-140 208-331 (411)
406 PF09205 DUF1955: Domain of un 78.3 15 0.00033 23.6 6.9 41 81-121 108-148 (161)
407 COG4649 Uncharacterized protei 78.2 12 0.00025 25.4 5.6 98 13-121 97-195 (221)
408 PF10579 Rapsyn_N: Rapsyn N-te 78.0 11 0.00023 21.7 8.6 55 63-117 10-67 (80)
409 KOG0739 AAA+-type ATPase [Post 77.8 21 0.00046 26.5 7.2 35 6-40 6-40 (439)
410 PF13812 PPR_3: Pentatricopept 77.3 5.4 0.00012 17.9 3.5 26 62-87 4-29 (34)
411 KOG2581 26S proteasome regulat 77.3 31 0.00067 26.6 10.3 37 8-44 245-281 (493)
412 PF02064 MAS20: MAS20 protein 77.3 12 0.00026 23.4 5.3 30 13-42 66-95 (121)
413 KOG1497 COP9 signalosome, subu 77.2 28 0.0006 26.0 11.4 86 55-141 99-194 (399)
414 cd02679 MIT_spastin MIT: domai 77.1 7.7 0.00017 22.3 4.1 12 76-87 6-17 (79)
415 KOG2561 Adaptor protein NUB1, 76.1 35 0.00076 26.6 10.0 112 6-121 159-295 (568)
416 COG4649 Uncharacterized protei 76.0 22 0.00047 24.1 12.0 117 14-143 62-183 (221)
417 PF02184 HAT: HAT (Half-A-TPR) 75.9 6.7 0.00015 18.3 3.2 16 75-90 3-18 (32)
418 PF09797 NatB_MDM20: N-acetylt 75.7 31 0.00068 25.8 8.9 47 72-118 196-242 (365)
419 PF08771 Rapamycin_bind: Rapam 75.5 15 0.00033 22.1 5.7 82 59-140 14-97 (100)
420 PF04010 DUF357: Protein of un 75.3 12 0.00027 21.2 4.6 34 4-37 29-62 (75)
421 KOG0529 Protein geranylgeranyl 74.6 37 0.00079 26.1 12.2 74 70-143 86-161 (421)
422 PF01239 PPTA: Protein prenylt 74.1 6.9 0.00015 17.6 4.3 26 79-104 3-28 (31)
423 COG0790 FOG: TPR repeat, SEL1 74.0 29 0.00064 24.8 10.8 80 27-126 172-270 (292)
424 smart00745 MIT Microtubule Int 73.8 13 0.00029 20.7 6.6 14 106-119 21-34 (77)
425 KOG0985 Vesicle coat protein c 73.0 65 0.0014 28.3 10.1 104 15-123 1053-1163(1666)
426 PF04190 DUF410: Protein of un 73.0 31 0.00068 24.6 10.5 98 8-117 8-114 (260)
427 PF12652 CotJB: CotJB protein; 72.7 16 0.00034 21.0 6.5 51 103-157 5-55 (78)
428 cd00280 TRFH Telomeric Repeat 72.1 28 0.00061 23.7 7.3 33 62-95 114-146 (200)
429 KOG3677 RNA polymerase I-assoc 71.0 17 0.00037 28.0 5.6 94 63-156 276-373 (525)
430 PF13041 PPR_2: PPR repeat fam 70.6 12 0.00026 18.8 5.5 29 61-89 5-33 (50)
431 TIGR02710 CRISPR-associated pr 70.1 46 0.001 25.4 11.3 64 10-83 130-195 (380)
432 KOG2582 COP9 signalosome, subu 70.0 9.3 0.0002 28.8 4.0 102 10-122 102-212 (422)
433 KOG4056 Translocase of outer m 69.5 26 0.00056 22.5 5.4 30 13-42 84-113 (143)
434 KOG3616 Selective LIM binding 69.5 43 0.00094 28.2 7.8 98 15-120 711-818 (1636)
435 PF08238 Sel1: Sel1 repeat; I 69.4 10 0.00022 17.6 3.8 28 94-121 2-36 (39)
436 PF08969 USP8_dimer: USP8 dime 69.1 24 0.00051 21.6 5.7 36 5-40 33-68 (115)
437 KOG0546 HSP90 co-chaperone CPR 67.8 5.5 0.00012 29.7 2.5 44 59-102 309-352 (372)
438 KOG4563 Cell cycle-regulated h 67.1 44 0.00095 25.3 6.9 37 6-42 37-73 (400)
439 PHA02537 M terminase endonucle 66.8 42 0.00091 23.6 7.1 75 9-92 128-211 (230)
440 TIGR00985 3a0801s04tom mitocho 66.8 24 0.00051 23.0 5.0 37 98-134 95-132 (148)
441 KOG0276 Vesicle coat complex C 64.3 50 0.0011 27.0 7.1 48 70-122 648-695 (794)
442 smart00671 SEL1 Sel1-like repe 64.2 13 0.00028 16.8 4.0 26 95-120 3-32 (36)
443 COG4455 ImpE Protein of avirul 64.0 49 0.0011 23.4 6.7 61 18-93 9-69 (273)
444 TIGR00985 3a0801s04tom mitocho 63.1 37 0.0008 22.1 5.4 30 13-42 93-123 (148)
445 KOG0276 Vesicle coat complex C 62.1 51 0.0011 26.9 6.8 58 62-119 669-747 (794)
446 KOG4563 Cell cycle-regulated h 61.7 21 0.00045 26.9 4.5 56 62-117 44-107 (400)
447 KOG3783 Uncharacterized conser 61.3 84 0.0018 25.2 9.3 93 13-119 270-372 (546)
448 KOG3677 RNA polymerase I-assoc 60.9 15 0.00032 28.3 3.7 55 64-122 240-301 (525)
449 PF12753 Nro1: Nuclear pore co 60.4 24 0.00053 26.9 4.7 32 75-108 334-365 (404)
450 KOG2997 F-box protein FBX9 [Ge 60.2 32 0.00069 25.6 5.1 39 93-131 19-57 (366)
451 cd02656 MIT MIT: domain contai 59.8 29 0.00062 19.3 6.7 13 107-119 20-32 (75)
452 COG1849 Uncharacterized protei 59.5 34 0.00074 20.1 4.5 34 4-37 35-68 (90)
453 KOG4056 Translocase of outer m 59.5 42 0.00091 21.6 5.0 37 98-134 86-122 (143)
454 PF07163 Pex26: Pex26 protein; 59.3 68 0.0015 23.5 10.8 115 11-127 36-151 (309)
455 PF03745 DUF309: Domain of unk 58.5 28 0.00061 18.8 4.9 59 14-81 3-61 (62)
456 KOG2034 Vacuolar sorting prote 58.4 15 0.00033 30.8 3.6 51 65-119 364-415 (911)
457 KOG1538 Uncharacterized conser 58.3 39 0.00085 27.9 5.7 52 65-119 779-830 (1081)
458 PRK15490 Vi polysaccharide bio 56.8 1.1E+02 0.0023 25.0 9.6 54 62-117 45-98 (578)
459 PF04090 RNA_pol_I_TF: RNA pol 56.5 63 0.0014 22.2 6.2 66 59-124 41-107 (199)
460 PF08626 TRAPPC9-Trs120: Trans 56.0 22 0.00048 31.3 4.5 36 8-43 240-275 (1185)
461 PF10366 Vps39_1: Vacuolar sor 56.0 18 0.00039 22.0 3.0 34 5-38 34-67 (108)
462 PF11846 DUF3366: Domain of un 55.5 60 0.0013 21.7 7.6 32 59-90 144-175 (193)
463 cd02683 MIT_1 MIT: domain cont 55.5 37 0.0008 19.3 8.3 16 112-127 32-47 (77)
464 cd00280 TRFH Telomeric Repeat 55.4 40 0.00086 23.0 4.6 35 101-136 119-153 (200)
465 PF14858 DUF4486: Domain of un 53.5 1.2E+02 0.0025 24.4 7.7 67 18-87 159-225 (542)
466 KOG1920 IkappaB kinase complex 52.2 1.7E+02 0.0038 26.0 10.7 25 62-86 955-979 (1265)
467 COG1747 Uncharacterized N-term 51.7 1.3E+02 0.0028 24.3 9.2 80 62-143 69-148 (711)
468 KOG2997 F-box protein FBX9 [Ge 51.6 29 0.00063 25.8 3.8 37 6-42 15-51 (366)
469 COG5091 SGT1 Suppressor of G2 51.3 57 0.0012 23.7 5.1 61 20-89 49-109 (368)
470 KOG3616 Selective LIM binding 50.8 1.6E+02 0.0034 25.2 9.5 55 62-117 794-848 (1636)
471 PRK11619 lytic murein transgly 50.5 1.4E+02 0.0031 24.6 10.2 54 68-121 321-374 (644)
472 PRK15490 Vi polysaccharide bio 50.0 1.4E+02 0.003 24.3 8.7 62 67-128 16-77 (578)
473 PF13226 DUF4034: Domain of un 49.6 1E+02 0.0022 22.5 10.8 111 17-139 7-145 (277)
474 KOG1914 mRNA cleavage and poly 49.4 1.4E+02 0.0031 24.2 13.8 54 69-122 411-464 (656)
475 cd07642 BAR_ASAP2 The Bin/Amph 48.4 92 0.002 21.7 11.3 94 62-155 28-124 (215)
476 KOG0890 Protein kinase of the 48.2 2.7E+02 0.0058 27.0 13.5 64 57-122 1668-1731(2382)
477 COG5107 RNA14 Pre-mRNA 3'-end 47.8 1.4E+02 0.0031 23.7 8.1 54 81-134 30-83 (660)
478 PF15469 Sec5: Exocyst complex 47.2 83 0.0018 20.9 5.8 43 103-145 96-142 (182)
479 KOG1811 Predicted Zn2+-binding 47.0 1.7E+02 0.0036 24.3 7.9 28 62-89 590-617 (1141)
480 KOG2758 Translation initiation 46.5 1.3E+02 0.0027 22.8 7.7 45 79-123 115-159 (432)
481 PF12309 KBP_C: KIF-1 binding 45.5 1E+02 0.0022 23.4 6.1 16 107-122 323-338 (371)
482 COG2015 Alkyl sulfatase and re 45.3 1E+02 0.0022 24.6 6.0 50 95-144 454-503 (655)
483 cd02677 MIT_SNX15 MIT: domain 45.1 57 0.0012 18.4 7.7 44 107-154 20-70 (75)
484 PF08311 Mad3_BUB1_I: Mad3/BUB 44.0 53 0.0012 20.5 3.8 28 59-86 99-126 (126)
485 COG1447 CelC Phosphotransferas 44.0 71 0.0015 19.5 4.1 34 86-119 12-45 (105)
486 PF15297 CKAP2_C: Cytoskeleton 43.5 1.4E+02 0.0031 22.5 7.2 30 93-122 140-169 (353)
487 KOG4459 Membrane-associated pr 42.9 1.6E+02 0.0036 23.1 9.6 46 94-139 134-179 (471)
488 PF12921 ATP13: Mitochondrial 42.9 84 0.0018 19.7 7.8 63 62-124 5-83 (126)
489 KOG2709 Uncharacterized conser 42.8 29 0.00062 26.8 2.8 30 59-88 22-51 (560)
490 PF13838 Clathrin_H_link: Clat 42.4 51 0.0011 18.2 3.1 25 11-35 7-31 (66)
491 PF07980 SusD: SusD family; I 42.4 1.1E+02 0.0025 21.1 6.7 30 93-122 133-162 (266)
492 PF00244 14-3-3: 14-3-3 protei 42.3 74 0.0016 22.4 4.7 48 75-122 142-198 (236)
493 KOG2758 Translation initiation 42.1 1.5E+02 0.0032 22.4 6.8 70 7-87 126-195 (432)
494 PF12753 Nro1: Nuclear pore co 41.6 68 0.0015 24.6 4.6 13 62-74 353-365 (404)
495 PF04348 LppC: LppC putative l 41.5 8.7 0.00019 30.5 0.0 103 8-122 22-127 (536)
496 KOG0687 26S proteasome regulat 40.5 95 0.0021 23.4 5.0 50 71-121 83-132 (393)
497 COG5091 SGT1 Suppressor of G2 40.5 1.5E+02 0.0032 21.8 7.3 121 19-145 4-130 (368)
498 PF02255 PTS_IIA: PTS system, 40.5 69 0.0015 19.1 3.7 29 91-119 12-40 (96)
499 KOG2460 Signal recognition par 40.3 2E+02 0.0043 23.2 6.9 25 97-121 426-450 (593)
500 PF04190 DUF410: Protein of un 40.3 1.4E+02 0.003 21.4 9.4 63 60-122 91-170 (260)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-28 Score=176.34 Aligned_cols=157 Identities=43% Similarity=0.771 Sum_probs=152.2
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
..++++..+...++.|+.+|+.|+|..|+..|.+|+...+.....++++......++..+++|+|.|+.+++.|.+|+..
T Consensus 200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~ 279 (397)
T KOG0543|consen 200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES 279 (397)
T ss_pred chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH
Confidence 45579999999999999999999999999999999999998888888999999999999999999999999999999999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
|+++|.++|.|.+++|++|.++..+|+|+.|+.+|++++.++|+|..+...+..|..+++++.+.+++.|++||..+
T Consensus 280 c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 280 CNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=6.2e-24 Score=146.89 Aligned_cols=127 Identities=29% Similarity=0.370 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
+++....++.++..|+.+.+.++|.+|+..|.+||.++|.++.+ |.|+|.+|.++|+++.|+++|
T Consensus 74 ~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDc 138 (304)
T KOG0553|consen 74 PEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDC 138 (304)
T ss_pred hHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHH
Confidence 44677899999999999999999999999999999999988654 999999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
+.+|.+||.+.++|.++|.+|+.+|++.+|+..|++++.++|+|...+..+..+...+.+..
T Consensus 139 e~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 139 ESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999998887776654
No 3
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-22 Score=135.24 Aligned_cols=156 Identities=29% Similarity=0.413 Sum_probs=144.2
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc---CCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH---HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE 77 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 77 (159)
||.+|+++.+..+.+.||.+|+.|+|.+|+..|..|+....+- ...-+.+|.+++....+++.|.+.|++..|+|.+
T Consensus 169 lsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ye 248 (329)
T KOG0545|consen 169 LSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYE 248 (329)
T ss_pred CCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHH
Confidence 7899999999999999999999999999999999999876541 2223478999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 78 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 78 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
+++.|..+++.+|++.+|++++|.++....+.++|..+|..++.++|.- +.+...+..+..++.++++.++-.|++||+
T Consensus 249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~kmfs 328 (329)
T KOG0545|consen 249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRKMFS 328 (329)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999987 457788899999999999999999999996
No 4
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=5.3e-20 Score=121.16 Aligned_cols=140 Identities=32% Similarity=0.399 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
.+..+..++..|+.+|..|+|.+|...|..||.+.|..+. ..+..+|.|+|.|.++++.++.|+..|.++
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 3667899999999999999999999999999999886543 456778999999999999999999999999
Q ss_pred hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
|.++|.+.+++.+++.+|.....|++|+.+|.+++..+|....+...+.++-..+....+..+..+..-+
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kL 230 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKL 230 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998888887777665544433
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.80 E-value=3.9e-18 Score=109.99 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=107.1
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.+|++++.++|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35668999999999999999999999997775 445999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
++.+++++|.++...|++++|+..|.+++.+.|+++......+.+...+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888888766653
No 6
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=4.6e-18 Score=124.52 Aligned_cols=130 Identities=32% Similarity=0.391 Sum_probs=110.6
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 80 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 80 (159)
|+++++.+.+..++.+||.+|+.|.|++||++|.+||++.|+.|.. |.|++.||..+|+|++.++
T Consensus 106 ~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vie 170 (606)
T KOG0547|consen 106 MLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVIE 170 (606)
T ss_pred cChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHHH
Confidence 5788999999999999999999999999999999999999887655 8999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHH
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-DPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+|.+++.++|++.+++++++.++..+|++++|+.+..-.--+ .=.|.++.....++....+..+-
T Consensus 171 d~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka 236 (606)
T KOG0547|consen 171 DCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKA 236 (606)
T ss_pred HHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877533222 22455566666666655554433
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.2e-18 Score=126.24 Aligned_cols=117 Identities=33% Similarity=0.426 Sum_probs=110.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++..+..|+.+|+.|+|..|+..|.++|..+|+++ .+|.|+|.||.+++.+..|+.+|+.+|++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------------~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------------RLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 477788899999999999999999999999988774 55999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+|+++++|++.|.++..+.+|++|...|+.++.++|++.++...+.+|...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998764
No 8
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.78 E-value=5.9e-18 Score=123.95 Aligned_cols=118 Identities=21% Similarity=0.318 Sum_probs=110.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|+.+|..|+|..|+.+|.+++.+.|.+ ..++.++|.++..+|++++|+.++++++.++|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------------AELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 347788999999999999999999999998875 34589999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.++.+++++|.+++.+|+|++|+..|++++.++|+++.+..++..|...+...
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998888654
No 9
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.5e-18 Score=123.77 Aligned_cols=113 Identities=23% Similarity=0.264 Sum_probs=107.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+....+.||.+|..|+|+.|+.+|..+|.++|.+ ..+|.|++.+|.++|+|++|+.+..+.++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------------hvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------------HVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999998875 3459999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
|+|+++|.+.|-++..+|+|++|+..|.+.|..+|+|+.....+..+.
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999999999999999999888
No 10
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.74 E-value=3.3e-17 Score=116.09 Aligned_cols=118 Identities=25% Similarity=0.382 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
-+.....+++.||.||++|.|++||++|.+++...|.++.. +.|+|.+|++++.|..|..+|+.|
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhHHHH
Confidence 34556668999999999999999999999999998877654 889999999999999999999999
Q ss_pred hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
+.++-.+.++|-++|.+-..+|...+|.++++.++.++|++.+....++.+..
T Consensus 158 iaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 158 IALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999888877777654
No 11
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.72 E-value=4.1e-16 Score=100.00 Aligned_cols=117 Identities=8% Similarity=0.061 Sum_probs=102.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..+.+...|..++..|++++|...|+-++.++|.+.. .|+++|.|+..+|+|++|+..|.+++.+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------------YWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4577888999999999999999999999999887744 4999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+|+++.++++.|.|+...|+.+.|.+.|+.++..-..++.-.....+.+..+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988755554444444444333
No 12
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.2e-16 Score=115.08 Aligned_cols=127 Identities=25% Similarity=0.363 Sum_probs=115.2
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.+..+..+..|+..|+.|+|..|-++|..+|.++|.+... ...+|.|+|.+...+|+..+|+.+|+.++
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 4567788999999999999999999999999999886554 47889999999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
.++|..++++.++|.|+..+++|++|+++|++|+++..+ ..++..+.+.+..+++-+.
T Consensus 315 ~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 315 KIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR 372 (486)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999887 7888888888777765543
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.71 E-value=7e-16 Score=98.33 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=105.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+......|..++..|++.+|+..|.+++...|.+ ..++.++|.++..+|++++|..++++++.++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667889999999999999999999999987765 3458999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
|+++..++.+|.++...|++++|+..|++++.++|++.........+...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 132 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML 132 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988777776665443
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=4.3e-15 Score=116.10 Aligned_cols=110 Identities=29% Similarity=0.335 Sum_probs=101.2
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 80 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 80 (159)
||++++...+..++..|+.++..|+|+.|+..|.+++.+.|. + ..|.++|.|+..+|+|++|+.
T Consensus 118 ~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~---------------~~~~n~a~~~~~l~~~~~Ai~ 181 (615)
T TIGR00990 118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P---------------VYYSNRAACHNALGDWEKVVE 181 (615)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h---------------HHHHHHHHHHHHhCCHHHHHH
Confidence 577888888999999999999999999999999999998764 1 348999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
+|++++.++|++.++++++|.+|..+|++++|+..|..+...++.+
T Consensus 182 ~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~ 227 (615)
T TIGR00990 182 DTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR 227 (615)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999998887776654
No 15
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.8e-15 Score=104.32 Aligned_cols=108 Identities=27% Similarity=0.385 Sum_probs=98.3
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+.|+.+++.||.+|+.++|..|+.+|.++|...-.+++. ...+|.|+|.|...+|+|..|+.+|..++.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dl-----------navLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDL-----------NAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccH-----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999999999999986666654 588899999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
++|++.+++++-+.|++.+..+++|+.+++..+.++-..
T Consensus 148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 999999999999999999999999999988877665433
No 16
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.64 E-value=9.4e-15 Score=104.80 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=98.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+..+|..+...|++++|+..|.+++.+.|.+ ..++.++|.++..+|++++|+..+++++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 46678999999999999999999999999998765 345999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
+|++..+++++|.+++..|++++|+..|++++.++|+++.
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999999999999999974
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.64 E-value=2.6e-15 Score=113.28 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=105.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+.+..+|+++...+.|+.|+.+|.+|+.+.|.. ..++.|+|.+|...|..+-|+..|+++|.+.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------------hhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 4667888888888888888888888888887765 3447888888888888888888888888888
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
|..+.++.++|.++-..|+..+|..+|.+++.+.|+++.+...++.++..+.+..+..+ .|.+.|.
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~ 382 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALE 382 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHh
Confidence 88888888888888888888888888888888888888888888888888777765543 5655543
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=3e-14 Score=111.44 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=84.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC--------------h-----HHHHHHHHHHHHHHhhHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT--------------D-----DEKHQANGLRLSCYLNNAACK 69 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------~-----~~~~~~~~~~~~~~~~~a~~~ 69 (159)
.+..+...|..++..|++++|+..|.+++.+.|..+..- . .......+-...++.++|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455667777788888888888888888887765432100 0 000001111234566666666
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
..+|++++|+.+|++++.++|++..+++.+|.++..+|++++|+..|++++...|+++.++..++.+...+++..+
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 6666666666666666666666666666666666666666666666666666666666666666666655555443
No 19
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.61 E-value=5.1e-14 Score=87.46 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=98.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+.+...|..++..|++++|+..|.+++...|.++.. ..+++.+|.++...|+++.|+..++.++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA------------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999987765432 3458899999999999999999999999998
Q ss_pred Ccc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 90 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
|++ +.+++.+|.++...|++++|...+.+++...|+++.+....
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 875 67899999999999999999999999999999998765543
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-14 Score=108.70 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=84.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+..+|.++.++|++++|+.+|+.+|++.|. ...++.|+|.+|-.+|+...|++++.+||.++
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n 452 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN 452 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch---------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC
Confidence 334455555555556666666666665555433 35668888888888888888888888888888
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|..++++-++|.+|...|+..+|++.|+.++.+.|+.+.+.-.+.-+..-
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQI 502 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHH
Confidence 88888888888888888888888888888888888887776666655443
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=4.2e-14 Score=95.79 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=95.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH-hhhhC--HHHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK-LKLED--YSETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al 86 (159)
++.+...|..+...|+++.|+..|.+++.+.|+++ .++.++|.++ ...|+ +++|...+++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---------------ELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 55678889999999999999999999999988764 4488999874 67777 599999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
+.+|+++.+++.+|.++...|++++|+..|++++.+.|.+.+-...+..
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~ 186 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES 186 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999877544433333
No 22
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.58 E-value=1.7e-13 Score=90.92 Aligned_cols=117 Identities=24% Similarity=0.204 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 84 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 84 (159)
.+...+..+...|..+...|++++|+.+|.+++...+..+. ...++.++|.++..+|++++|+.++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556778899999999999999999999999998654321 135689999999999999999999999
Q ss_pred HhhcCCccHHHHHHHHHHHHhhCC--------------HHHHHHHHHHHHhcCCCcH-HHHHHH
Q 031461 85 VLELEPLNVKALYRRSQAHLKTSE--------------LEKAEADIKRALTIDPNNR-VVKLVY 133 (159)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~~-~~~~~~ 133 (159)
++...|.++.++..+|.++...|+ +++|...+++++.++|++. ++..++
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 161 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL 161 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHH
Confidence 999999999999999999999887 6788888899999999873 343333
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.54 E-value=2.3e-13 Score=87.74 Aligned_cols=104 Identities=13% Similarity=0.001 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHH
Q 031461 31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE 110 (159)
Q Consensus 31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 110 (159)
..|.+++.+.|.. +.++|.++...|++++|..+|++++.++|.+..+++.+|.++...|+++
T Consensus 14 ~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~ 75 (144)
T PRK15359 14 DILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT 75 (144)
T ss_pred HHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 4577788776542 5678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 111 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT 153 (159)
Q Consensus 111 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (159)
+|+..|.+++.++|+++.++..++.+...+++..+... .|..
T Consensus 76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~ 117 (144)
T PRK15359 76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQT 117 (144)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence 99999999999999999999999999998888766533 4443
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.54 E-value=4.2e-14 Score=79.87 Aligned_cols=66 Identities=30% Similarity=0.475 Sum_probs=63.3
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCC
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDP 124 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 124 (159)
..++.++|.+++..|+|++|+.+|++++.++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3458999999999999999999999999999999999999999999999 79999999999999998
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.4e-13 Score=98.82 Aligned_cols=120 Identities=15% Similarity=0.081 Sum_probs=67.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+.-.||-|--.++++.|+.+|++|++++|.. ..+|..+|+=|+.+++-..|+..+++|+.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~---------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKY---------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 34456888888899999999999999997764 233444444444444444444444444444444
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+-++||.+|++|.-++-..=|+-+|++|+.+-|+|+.++..++.|..++.+..+.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 4444444444444444444444444444444444444444444444444444333
No 26
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6.7e-14 Score=94.68 Aligned_cols=115 Identities=30% Similarity=0.392 Sum_probs=100.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++.+.+.|+.+|..++|..||.+|.++|.+.|..+.+ |.|++.||+++++|+.+..+|.++++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 457889999999999999999999999999998876544 89999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---C--CcHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID---P--NNRVVKLVYMELK 137 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p--~~~~~~~~~~~~~ 137 (159)
++|+..++++.+|.+......|++|+..++++.++. | .-..+...+..++
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999996652 2 1234555555554
No 27
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.53 E-value=4.7e-14 Score=103.62 Aligned_cols=122 Identities=24% Similarity=0.282 Sum_probs=113.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.+...|+.++..+.|+.|+..|.++|++.|+...+ +.+++..+++.++|..|+.++.++|++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence 35678889999999999999999999999999987655 889999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+|...++|+++|.+...++++.+|+..|+....+.|+++.+...+..|.....++..
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999887776543
No 28
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.7e-13 Score=100.44 Aligned_cols=120 Identities=19% Similarity=0.163 Sum_probs=100.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+.+.|.++|..+.|.+|+.+|..++...+...... ..+.+++.|+|.++.+++.+++|+.+++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~--------~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK--------IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc--------cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 356778888888888888888888885443221110 135778999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
++.++..+|.+|..+|+++.|+..|.+++.+.|+|..+...+..+...
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888888766544
No 29
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.6e-12 Score=95.30 Aligned_cols=125 Identities=14% Similarity=0.123 Sum_probs=112.9
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
-.|-.+...++...||..|+.|++++|.+ ..+|+.+|++|..++.+.-|+-+|++|+.+.|.++.
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~D---------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsR 433 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRD---------------YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSR 433 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchh---------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchH
Confidence 34777889999999999999999998876 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
.|..+|+||.++++.++|+++|.+++.....+..+...+++++++++..++.. .-|.+-.
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v 493 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999998876653 3454443
No 30
>PRK15331 chaperone protein SicA; Provisional
Probab=99.50 E-value=9.9e-13 Score=84.91 Aligned_cols=117 Identities=9% Similarity=0.082 Sum_probs=101.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..+.+...|-.+|.+|++++|...|.-..-+++.++.+ +..+|.|+..+++|++|+..|..+..+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35667888999999999999999999999887777544 899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+++++...+..|+||..+|+...|..+|..++. .|.+..+...-......+.
T Consensus 101 ~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~ 152 (165)
T PRK15331 101 LKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK 152 (165)
T ss_pred ccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998 5666665554444444443
No 31
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.49 E-value=3.4e-12 Score=84.41 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..+...|++++|+..|.+++.+.+.... ...++.++|.++...|++++|+.++++++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346778899999999999999999999999998654221 13468999999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHH-------hhCCHH-------HHHHHHHHHHhcCCCc
Q 031461 87 ELEPLNVKALYRRSQAHL-------KTSELE-------KAEADIKRALTIDPNN 126 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-------~~~~~~-------~A~~~~~~al~~~p~~ 126 (159)
.++|.+..++..+|.++. ..|+++ +|+..|++++..+|.+
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999 777766 5666666777888865
No 32
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.49 E-value=2e-13 Score=80.11 Aligned_cols=83 Identities=29% Similarity=0.380 Sum_probs=72.6
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.|+|+.|+.+|.+++...|.++. ...++.+|.|++.+|+|++|+..+++ +..+|.++...+.+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh-------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 68999999999999999885321 34577899999999999999999999 88899999999999999
Q ss_pred HHhhCCHHHHHHHHHHH
Q 031461 103 HLKTSELEKAEADIKRA 119 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~a 119 (159)
+..+|++++|+..|+++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2.5e-13 Score=96.69 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=100.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...|..+.+.|++++|+..|.++++..|.++ .+...++.++...|+++++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~---------------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP---------------DARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H---------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 45577889999999999999999999999988764 347788999999999999999999988888
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
|+++..+..+|.++..+|++++|+.+|++++...|+|+.+...++.+....++.++... .+.+++..+
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~~l 278 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALRLL 278 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99999999999999999999999999999999999999999999999999888876643 555555443
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.49 E-value=1.4e-12 Score=100.91 Aligned_cols=119 Identities=9% Similarity=-0.012 Sum_probs=74.4
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|..+...|++++|+..|.+++.+.|+++ .+++.+|.++...|++++|+..++++++++|.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 344556666666667777777777666655542 33666666666677777777777777777766
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTID-PNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
++.+++.++.+++..|++++|+..+++++... |+++.++..++.+...+++.++
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~e 459 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHEL 459 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHH
Confidence 66655555555666666666766666666553 5556666666666555544433
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.48 E-value=2e-12 Score=104.90 Aligned_cols=115 Identities=5% Similarity=-0.008 Sum_probs=82.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|.++.+.|++++|+..|.+++.+.|.++ .++.++|.++...|++++|+..+++++.++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3455666777777777777777777777766543 3477777777777777777777777777777
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+++.+++++|.++...|++++|+..|++++.++|++..+....+.+....
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 77777777777777777777777777777777777777666666555443
No 36
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.48 E-value=2.4e-12 Score=101.13 Aligned_cols=130 Identities=6% Similarity=-0.052 Sum_probs=119.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.++.+|.+..+.|.+++|...+..++.+.|.+ ..+..+++.+..+++++++|+..+++++..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 6778889999999999999999999999998775 4568999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
|+++.+++.+|.++..+|++++|+..|++++..+|+++.++..++.+.+..++..+... .|.+.+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a~ 215 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAGL 215 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999998888866644 666654
No 37
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=1.4e-12 Score=88.35 Aligned_cols=117 Identities=13% Similarity=0.097 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.++.++++..+.+++...|.+ ...|..+|.++..+|++++|+..++++++++|+++..+..+|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 466788888888888887776 44599999999999999999999999999999999999999998
Q ss_pred H-HhhCC--HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 103 H-LKTSE--LEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 103 ~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
+ ...|+ +++|...+++++..+|+++.++..++.+....++.++... .+.++.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL 171 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVL 171 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence 5 67787 5999999999999999999999999999988888876644 555554
No 38
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.48 E-value=2.7e-13 Score=75.66 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=60.2
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
.+|..++..|+|++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788999999999999999999999999999999999999999999999999999999999985
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=2.8e-13 Score=102.54 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=110.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCC--------hHHH----------HHHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-SFT--------DDEK----------HQANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~--------~~~~----------~~~~~~~~~~~~~~a~~~~ 70 (159)
.+.+...||.+--+++++.||++|.+|+.++|... .++ .++. ...++..-.+|+.+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 45678889999999999999999999999988421 110 0110 0123444557889999999
Q ss_pred hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
++++++.|+-+|++|+.++|.+.......|.++.++|+.++|+..|++|+.++|.|+-.....+.+...+.+..+.
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 9999999999999999999999988999999999999999999999999999999988888888888887777654
No 40
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.47 E-value=7.7e-12 Score=86.84 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=100.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.+...|..++..|+|+.|+..|.+++...|.++.. ..+++.+|.++...|++++|+..++++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYA------------EQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 46778999999999999999999999999998765432 346899999999999999999999999999
Q ss_pred CCccHH---HHHHHHHHHHhh--------CCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 89 EPLNVK---ALYRRSQAHLKT--------SELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 89 ~~~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
.|+++. +++.+|.++... |++++|+..|++++..+|++..+...+.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 998876 799999999887 8999999999999999999976654443
No 41
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.47 E-value=9.6e-13 Score=77.44 Aligned_cols=99 Identities=36% Similarity=0.443 Sum_probs=88.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|..++..|++++|+..+..++...|.++ .++..+|.++...+++++|..+++.++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 356788999999999999999999998866542 44889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
+..++..+|.++...|++++|...+.+++...|.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999988774
No 42
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=1.1e-12 Score=93.35 Aligned_cols=130 Identities=17% Similarity=0.217 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
+-.++..+....+-+......++|.+++..++++++..|..+.+. ...+..++.|+..-+++.+|++.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----------~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----------YNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----------eeeeheeeecccccCCHHHHHHHH
Confidence 345667788888888999999999999999999999887755542 445778899999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.+++.++|++..+++.++.+|..-..|++|+..|+.|..++|+|..+...+...++..++.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs 391 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS 391 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998887665443
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=7.5e-12 Score=85.59 Aligned_cols=135 Identities=19% Similarity=0.138 Sum_probs=69.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh------------HH-------HHHHHHHHHHHHhhHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD------------DE-------KHQANGLRLSCYLNNAACK 69 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~-------~~~~~~~~~~~~~~~a~~~ 69 (159)
.+..+...|..++..|++++|+..+.+++...|.+...-. +. .....+-...++.++|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3555666777777777777777777777766544311100 00 0000000112344555555
Q ss_pred hhhhCHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
...|++++|...+++++... |.....++.+|.++...|++++|...+.+++...|+++.+...++.+....++.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 55555555555555555432 233445555555555555666666666666555555555555555555444444
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=9.3e-13 Score=99.80 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=113.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
-+.++..|.+|.++++++.|.-+|.+|+.++|.+. .+..-+|..+..+|+.++|+..+++|+.++
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------------VILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 35677889999999999999999999999988764 447889999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
|.++-+-+.+|.+++.++++++|+..+++.-.+.|++..+...++++.++++.....
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 999999999999999999999999999999999999999999999999998876544
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.8e-11 Score=83.68 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=102.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------HHH---HHH-----HHHHHHHHhhHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEK---HQA-----NGLRLSCYLNNAAC 68 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~~~---~~~-----~~~~~~~~~~~a~~ 68 (159)
...+...|..++..|++++|+..|.+++...|.++.... +.. ... .+.....+.++|.+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 345566777777777777777777777776554321100 000 000 01123457789999
Q ss_pred HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+...|++++|...+.+++..+|.++.+++.+|.++...|++++|...+++++...|.++........+....+...+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA 221 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999989888888777777766555444
No 46
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.44 E-value=7.7e-12 Score=101.62 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=96.3
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH 103 (159)
Q Consensus 24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 103 (159)
|++++|+..|.+++...|. ..++.++|.++..+|++++|+..+++++.++|+++.++..+|.++
T Consensus 590 Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555442 345889999999999999999999999999999999999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 104 LKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 104 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
...|++++|+..|++++.++|+++.++..++.+...+++..+... .|.+++
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~-~l~~Al 704 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH-YARLVI 704 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 999999999999999999999999999999999988888766544 555443
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=4.2e-12 Score=98.28 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=91.4
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.+++.+|+..+.+++.++|.++ .++..+|.++...|++++|+..+++++.++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNP---------------QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3568999999999999988764 4488999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
+...|++++|+..+++++.++|.++........+....++.
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 99999999999999999999999876654444433333433
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.44 E-value=6.3e-12 Score=89.57 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=102.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++.+.++|+.++..|++..|+..|..|++.+|++ -.+++.+|.+|+.+|.-..|+.++.++|.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 457899999999999999999999999999997765 45588999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH---HHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV---VKLVYMELK 137 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~ 137 (159)
+.|+...+-+.+|.++.++|.++.|..+|..++..+|++.. ++..+..+.
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~ 153 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ 153 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence 99999999999999999999999999999999999997644 444444443
No 49
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=5.7e-12 Score=90.50 Aligned_cols=113 Identities=11% Similarity=-0.035 Sum_probs=98.1
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.+..+.+|..+.++|...+.++.. ....++++|.++..+|++++|+..|++++.++|+++.+++.+|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~-----------~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEE-----------RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHh-----------hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 456788999999988755433322 256699999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+...|++++|+..|.+++.++|++..++..++.+....++.++.
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999998887766665554
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=8.7e-12 Score=84.18 Aligned_cols=136 Identities=21% Similarity=0.101 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC----------------hHHH---HHHHHHHHHHHhhHHH
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT----------------DDEK---HQANGLRLSCYLNNAA 67 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------~~~~---~~~~~~~~~~~~~~a~ 67 (159)
-..++...++|..|++.|++..|..-++++|+.+|++...- .+.. ..+.+-...+++|.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 34567777888888888888888888888888877642210 0000 0011122334555555
Q ss_pred HHhhhhCHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 68 CKLKLEDYSETSSLCTKVLEL--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
.....|+|++|...|.+|+.. .|..+..+-++|.|-.+.|+++.|...|++++.++|+++.....+...+..-++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 555555555555555555542 234455566666666666666666666666666666666666555555544333
No 51
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.43 E-value=1.5e-11 Score=86.52 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=97.2
Q ss_pred HHHHHhhhHH-HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 11 ERKKHDGNLL-FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 11 ~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+..|..+ +..|+|++|+..|...+...|.++-. ..+++.+|.+|+..|++++|+..|..++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a------------~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ------------PNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4455566655 66799999999999999998876432 4568999999999999999999999999988
Q ss_pred Ccc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 90 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
|++ +.+++.+|.++..+|++++|+..|++++...|+...+.....++
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 774 88999999999999999999999999999999987665554443
No 52
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.42 E-value=1.5e-12 Score=73.43 Aligned_cols=66 Identities=30% Similarity=0.424 Sum_probs=61.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhc
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~ 88 (159)
+..+...|..++..|+|++|+.+|.++++++|.+ ..+++++|.++..+| ++++|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 6788999999999999999999999999998775 456999999999999 799999999999999
Q ss_pred CC
Q 031461 89 EP 90 (159)
Q Consensus 89 ~~ 90 (159)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.3e-12 Score=92.51 Aligned_cols=138 Identities=18% Similarity=0.252 Sum_probs=71.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC-------------h------HHHHHHHHHHHHHHhhHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------D------DEKHQANGLRLSCYLNNAACK 69 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~~a~~~ 69 (159)
.++.+.-.|.-+|-.|++..|...|..+|.+.+..+..- . ..-..+++-...+|+-+|...
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 355566666666666666666666666666655432210 0 000001111122355555555
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+-+++|++|+.+|++++.++|.++-++..++.+.++++.++++...|+.+....|+.+++....+.+.....++.+.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555444444443
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.42 E-value=5.5e-12 Score=99.33 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=92.3
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH----HHHHHHHHhhcCCc
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE----TSSLCTKVLELEPL 91 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~~~ 91 (159)
.|..+...|++++|+..|.+++...|.+ ..++.++|.++..+|++++ |+..+++++.++|+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 3566677788888888888888775543 3447788888888888885 78888888888888
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
++.++..+|.++...|++++|+..+++++.++|+++.+...++.+....++..+.
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 8888888888888888888888888888888888888888888877776666544
No 55
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.41 E-value=2.7e-11 Score=94.69 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=119.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...||..|..|++++|...+..+|+.+|..+. +|..+|.+|..+|+.++|+.+.--|-.++
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------------ay~tL~~IyEqrGd~eK~l~~~llAAHL~ 203 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------------AYYTLGEIYEQRGDIEKALNFWLLAAHLN 203 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------------hHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 677889999999999999999999999999887654 39999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
|.+...|...++....+|++..|.-+|.+|++..|.+.........+..++++.... ...|..+|.-+
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A-m~~f~~l~~~~ 271 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA-METFLQLLQLD 271 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHH-HHHHHHHHhhC
Confidence 999999999999999999999999999999999999999888888888888887555 44777777543
No 56
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.40 E-value=2.6e-11 Score=76.73 Aligned_cols=110 Identities=20% Similarity=0.206 Sum_probs=97.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...|...++.|+|..|++.|+.+....|..+-. ..+.+.++.+|++.++|++|+..+++-|+++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999999888765543 4568899999999999999999999999999
Q ss_pred Ccc---HHHHHHHHHHHHhhCC---------------HHHHHHHHHHHHhcCCCcHHHHH
Q 031461 90 PLN---VKALYRRSQAHLKTSE---------------LEKAEADIKRALTIDPNNRVVKL 131 (159)
Q Consensus 90 ~~~---~~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~ 131 (159)
|.+ +.++|.+|.+++.+.. ...|...|++++...|+++-+..
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 987 6789999999999987 88999999999999999865543
No 57
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.40 E-value=1.4e-11 Score=78.44 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=90.3
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHH
Q 031461 31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE 110 (159)
Q Consensus 31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 110 (159)
+.|.+++...|.+ ......+|.++...|++++|...++.++..+|.++.+++.+|.++...|+++
T Consensus 4 ~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQ---------------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhh---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 3567777775554 3447899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461 111 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 147 (159)
Q Consensus 111 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
+|+..|.+++..+|+++..+..++.+....++..+..
T Consensus 69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~ 105 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESAL 105 (135)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999998887765543
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.39 E-value=2.7e-11 Score=95.44 Aligned_cols=121 Identities=8% Similarity=0.004 Sum_probs=102.2
Q ss_pred HHHHHhhhHHHHcccHHH----HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 11 ERKKHDGNLLFRAGKYWR----ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
..+...|..++..|++++ |+..|.+++...|.+ ..++.++|.++...|++++|+..+++++
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------------VRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445668899999999986 899999999997765 3458899999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.++|+++.++..+|.++...|++++|+..|++++...|++.......+.+....++.++.
T Consensus 312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999999998876665556666555554443
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.39 E-value=5.5e-11 Score=82.57 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--------hCHHHHHHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------EDYSETSSLC 82 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~ 82 (159)
+.+...|..++..|++++|+..|.++++..|+++.. ..+++.+|.++... |++++|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 456788999999999999999999999998877654 23477888888776 8999999999
Q ss_pred HHHhhcCCccHHHH-----------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQRE 142 (159)
Q Consensus 83 ~~al~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~ 142 (159)
++++..+|++..++ +.+|.++...|++.+|+..|++++...|++ +.++..++.+...+++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999885442 467899999999999999999999997765 5788899999888888
Q ss_pred HHHHHH
Q 031461 143 YAKYQA 148 (159)
Q Consensus 143 ~~~~~~ 148 (159)
..+...
T Consensus 219 ~~~A~~ 224 (235)
T TIGR03302 219 KDLAQD 224 (235)
T ss_pred HHHHHH
Confidence 766543
No 60
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=1.5e-11 Score=79.09 Aligned_cols=98 Identities=9% Similarity=0.049 Sum_probs=88.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
....+.+|..+...|++++|...|+.+..++|.+...|+++|-|+..+|+|.+|+..|.++..++|+|+.+....+.|.-
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44477889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 031461 139 KQREYAKYQAEIFGTMLSK 157 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~ 157 (159)
.+++.... +..|..+.+.
T Consensus 115 ~lG~~~~A-~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYA-IKALKAVVRI 132 (157)
T ss_pred HcCCHHHH-HHHHHHHHHH
Confidence 88887665 4477766554
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.8e-12 Score=95.99 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=103.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+....+|..|+-.|+|+.|+++|+.||...|++ ..+|+.+|.+.....+.++|+..|++|+++.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---------------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq 494 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---------------YLLWNRLGATLANGNRSEEAISAYNRALQLQ 494 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---------------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcC
Confidence 4567778999999999999999999999998876 4569999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN----------NRVVKLVYMELKDKQRE 142 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~ 142 (159)
|..+++.|++|.++..+|.|++|+..|-.|+.+.+. +..++..++.+...+.+
T Consensus 495 P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR 557 (579)
T ss_pred CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999765 13477777755544443
No 62
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.38 E-value=1.3e-10 Score=79.20 Aligned_cols=128 Identities=23% Similarity=0.186 Sum_probs=100.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..+.+...|..++..|+|.+|+..|..++...|.++-. ..+.+.+|.++...|+|+.|+..+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a------------~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA------------PQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999998876543 566889999999999999999999999999
Q ss_pred CCcc---HHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLN---VKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 89 ~~~~---~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~~~ 148 (159)
.|++ +.+++.+|.+++... ...+|+..|+..+...|+.+ .+...+..+...+.+.+-...
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886 668999999987654 34589999999999999984 555666667666666544433
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.37 E-value=1.9e-11 Score=98.06 Aligned_cols=128 Identities=18% Similarity=0.146 Sum_probs=101.7
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..+...|++++|+..|.+++...|.+ ..++.++|.++...|+ .+|+..+++++.+.|
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN---------------AVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 445566777777788888888888877775543 3447788888888888 778999999998888
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
+++..+..+|.++...|++++|+..|++++..+|.++.+...+..+....++..+... .+.+|.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 898 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK-ELDKLL 898 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHHh
Confidence 8888888999999999999999999999999999998888888888887777655533 555543
No 64
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=2.8e-11 Score=81.76 Aligned_cols=124 Identities=18% Similarity=0.188 Sum_probs=97.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.++..|.-++.+|+|++|...|++|+.. |..+.. ..++.|+|.|.++.|+++.|..++++++.++
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~------------s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEP------------SDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCc------------chhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 344555555555555566666555555542 222222 4568999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
|+.+.+...++..++..|+|-.|..++++.....+-+.+.....-++.+.++.....
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a 226 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA 226 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999888888888877887777665443
No 65
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=7.3e-11 Score=98.24 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=101.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+..+|..++..|++++|+.+|.+++...|.++... .....+......+...+|.++...|++++|+..+++++.++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45567788888888888888888888888876544321 11111122223334567889999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
|+++.+++.+|.++...|++++|+..|++++.++|++..+...+..+.
T Consensus 382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998877776665
No 66
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=6.5e-11 Score=95.07 Aligned_cols=122 Identities=27% Similarity=0.290 Sum_probs=100.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+..|.+++...|.++ .++..+|.++...|++++|+..+++++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 188 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL---------------YAKLGLAQLALAENRFDEARALIDEVLTA 188 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------hhHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456678899999999999999999999999877653 23778888888888888888888888888
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+|.++.+++.+|.++...|++++|...|++++..+|.++.+...+..+....++..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888888888888888888888888888777777777655554443
No 67
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.35 E-value=9.3e-12 Score=70.93 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=65.7
Q ss_pred HHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 66 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 66 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
...|...++|++|+.++++++.++|+++..++.+|.++..+|++.+|...|++++...|+++.+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999999999999999999998877665543
No 68
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.35 E-value=2e-10 Score=80.20 Aligned_cols=127 Identities=17% Similarity=0.145 Sum_probs=103.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.....|..++..|+|+.|+..|+.++...|..+. ...+.+.+|.++.++++|++|+..+++.++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~------------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 556778999999999999999999999998876532 24557899999999999999999999999999
Q ss_pred Ccc---HHHHHHHHHHHHhhC------------------CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHH
Q 031461 90 PLN---VKALYRRSQAHLKTS------------------ELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 90 ~~~---~~~~~~~~~~~~~~~------------------~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~ 145 (159)
|++ +.+++.+|.++..++ ...+|+..|+..+...|+. +.+...+..++.++.+++-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 877 678899998875554 1357889999999999987 4566666777777766654
Q ss_pred HHH
Q 031461 146 YQA 148 (159)
Q Consensus 146 ~~~ 148 (159)
.-.
T Consensus 180 ~ia 182 (243)
T PRK10866 180 SVA 182 (243)
T ss_pred HHH
Confidence 333
No 69
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.34 E-value=5.2e-11 Score=81.72 Aligned_cols=121 Identities=19% Similarity=0.167 Sum_probs=109.5
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|...+..|+|..|+..+.++..+.|.++. ++..+|.+|.+.|+++.|...|.+++++.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------------AWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------------hhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 45566899999999999999999999999888754 499999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
..+.+.-++|..+.-.|+++.|...+.++...-+.++.+...+..+-...+...+.
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 99999999999999999999999999999999999999998888887766555443
No 70
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.34 E-value=8.7e-11 Score=81.44 Aligned_cols=114 Identities=16% Similarity=0.202 Sum_probs=102.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
+.+++.|..++..|+|..|...|..-++..|+++-. ..+++.+|.+++.+|+|..|...|..+++-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 448889999999999999999999999999876554 45699999999999999999999999999888
Q ss_pred cc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 91 LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 91 ~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
++ +++++.+|.+...+|+.++|...|+++++..|+.+.+......+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 76 78899999999999999999999999999999998776655444
No 71
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.5e-12 Score=88.58 Aligned_cols=153 Identities=27% Similarity=0.341 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---HH-HHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461 4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---DE-KHQANGLRLSCYLNNAACKLKLEDYSETS 79 (159)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 79 (159)
...+...+..++.|+..++.++|..|...|.+++......+.... ++ ...+..+...++.+++.+-++.+.+..|+
T Consensus 216 ~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~ 295 (372)
T KOG0546|consen 216 DKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGAR 295 (372)
T ss_pred chhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcce
Confidence 345667788889999999999999999999999998653221111 11 34466777888999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
..+..+++.++...+++++++..+..+.++++|.+++..+....|++..+...+..+.....++....++.+++||.
T Consensus 296 ~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 296 FRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred eccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999884
No 72
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.31 E-value=5.3e-11 Score=99.07 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=107.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
..|..++..|++++|+..|.+++...|.+ ..++..+|.++..+|++++|+.+++++++++|++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~ 338 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKD---------------SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc
Confidence 45888999999999999999999997765 345899999999999999999999999999997643
Q ss_pred --------------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 95 --------------ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 95 --------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
.....|.++...|++++|+..|++++.++|++..+...++.+....++..+... .|.++.
T Consensus 339 ~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL 412 (1157)
T PRK11447 339 RDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQAL 412 (1157)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 224568899999999999999999999999999999999999888877766544 555544
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.31 E-value=1.1e-11 Score=69.67 Aligned_cols=67 Identities=31% Similarity=0.399 Sum_probs=61.9
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
+..|+|++|+..+++++..+|+++.+++.+|.++...|++++|...+.+++..+|+++.++..++.|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999998888777654
No 74
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.30 E-value=2.9e-10 Score=84.31 Aligned_cols=84 Identities=23% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELKDK 139 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~ 139 (159)
.+.++|.++...|++++|+.++++++..+|++..+++.+|.++...|++++|+..|++++..+|.+ ..+...+..+...
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888888888888888888888877765 3444455555544
Q ss_pred HHHHH
Q 031461 140 QREYA 144 (159)
Q Consensus 140 ~~~~~ 144 (159)
.++.+
T Consensus 262 ~g~~~ 266 (389)
T PRK11788 262 LGDEA 266 (389)
T ss_pred cCCHH
Confidence 44433
No 75
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.3e-11 Score=83.22 Aligned_cols=93 Identities=26% Similarity=0.245 Sum_probs=85.8
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+-+-|.-.++.++|.+|+..|.+||.++|.++..|.+++.+|.++|.|+.|+++++.++.++|....++..++.++..++
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 031461 142 EYAKYQAEIFGTML 155 (159)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (159)
++.+.... |++..
T Consensus 164 k~~~A~~a-ykKaL 176 (304)
T KOG0553|consen 164 KYEEAIEA-YKKAL 176 (304)
T ss_pred cHHHHHHH-HHhhh
Confidence 98887664 77653
No 76
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=2.7e-10 Score=84.50 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=65.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
+...|..+...|++++|+..|.+++...|.. ..++..+|.++...|++++|+..+++++..+|.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 4456666677777777777777777765442 2235556666666666666666666666655544
Q ss_pred -HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 93 -VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..++..++.+|...|++++|+..+++++...|+.... ..+..+..
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~ 293 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLE 293 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHH
Confidence 3344555666666666666666666666666654332 33444333
No 77
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.27 E-value=1.2e-10 Score=93.46 Aligned_cols=113 Identities=9% Similarity=0.022 Sum_probs=102.6
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..+...|++.+|+..|.+++...|.++ .++..+|.++...|++++|+..+++++..+|
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P 114 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND---------------DYQRGLILTLADAGQYDEALVKAKQLVSGAP 114 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4477889999999999999999999999977763 3377999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
+++. ++.+|.++...|++++|+..+++++.+.|+++.+...+..+...
T Consensus 115 ~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 115 DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999988887776643
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.1e-10 Score=82.55 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=117.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.+.-+|..++...+.+.|+..|++++.++|..... -..-...-....+...|.-.++.|.|.+|.++|..+|.++
T Consensus 203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 5678888999999999999999999999998764221 1111122234457888999999999999999999999999
Q ss_pred Ccc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 90 PLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 90 ~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
|++ +..|.++|.+...+|+..+|+..+..++.++|.-..+....+.|+..+++..+.-+ .|.+..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~-d~~~a~ 348 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE-DYEKAM 348 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 986 67799999999999999999999999999999999999999999988888765433 454443
No 79
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=1e-10 Score=90.27 Aligned_cols=104 Identities=23% Similarity=0.197 Sum_probs=94.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH--HHHHHhh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS--LCTKVLE 87 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~ 87 (159)
+..++..|..+..+|.+.+|...|..++.++|.+++. ...+|.++...|+..-|.. .+..+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 5667889999999999999999999999998887554 7889999999998887777 9999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
++|.++++|+.+|.++..+|+.+.|..+|.-|+++++.+|-
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999999999999999999999988863
No 80
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.23 E-value=6.4e-11 Score=65.94 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=57.3
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
..|..++..|+|++|+..|+.++...|.+ ..++..+|.++..+|++++|+..+++++.++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999998765 45699999999999999999999999999999875
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=3.5e-10 Score=86.02 Aligned_cols=120 Identities=13% Similarity=0.020 Sum_probs=109.6
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..++..+..+|..++|...++.....++..|..++. +.-.|.....+|+-++|..++..+++.++
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~ 72 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCc
Confidence 457778889999999999999999999988876654 66778888899999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
.+..+|..+|.++....+|++|+++|+.|+.++|+|.+++.-+.-++.+++..+-
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999988877643
No 82
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.22 E-value=1.5e-09 Score=67.57 Aligned_cols=105 Identities=22% Similarity=0.134 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 84 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 84 (159)
..++....+--.|...-..|+.+.|++.|.+++.+.|.. .++|+|++..+...|+.++|+.++++
T Consensus 38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn~ 102 (175)
T KOG4555|consen 38 QAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLNK 102 (175)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHHH
Confidence 356677777788999999999999999999999998876 45599999999999999999999999
Q ss_pred HhhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 85 VLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 85 al~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
++.+..+. ..++..+|.+|..+|+-+.|..+|+.+-++-.
T Consensus 103 AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 103 ALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 99987543 56788999999999999999999999977754
No 83
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.22 E-value=5.4e-10 Score=88.25 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=102.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+.-+++.+|-.|+|..+..++..++...... .+....++++|.+|..+|+|++|..+|.++++.+|
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~------------~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENK------------SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh------------HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 345566777888888888888888777764322 33456699999999999999999999999999999
Q ss_pred cc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 91 LN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
++ .-+++.+|+.+...|++..|+.+|++++...|++......++.+.....
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 98 8889999999999999999999999999999999999999999987774
No 84
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.21 E-value=1.2e-09 Score=63.87 Aligned_cols=86 Identities=31% Similarity=0.354 Sum_probs=78.7
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
++.++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|+..|.+++...|.+..+...++.+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999998888888888777
Q ss_pred HHHHHH
Q 031461 141 REYAKY 146 (159)
Q Consensus 141 ~~~~~~ 146 (159)
++....
T Consensus 82 ~~~~~a 87 (100)
T cd00189 82 GKYEEA 87 (100)
T ss_pred HhHHHH
Confidence 765544
No 85
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.20 E-value=6.6e-10 Score=71.73 Aligned_cols=128 Identities=17% Similarity=0.124 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+...+...+......+..+++..+...+...+.-.|..+- ...+.+.+|.+++..|++++|...++.+
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~ 74 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY------------AALAALQLAKAAYEQGDYDEAKAALEKA 74 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445666666777777788888887777777776665422 2455677888888888888888888888
Q ss_pred hhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 86 LELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 86 l~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+...|+. +.+.+++|.++...|++++|+..+.. ..-.+-.+.+....+.|....++..+.
T Consensus 75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A 137 (145)
T PF09976_consen 75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEA 137 (145)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHH
Confidence 8776544 45777788888888888888888755 233344466777777777777666554
No 86
>PLN02789 farnesyltranstransferase
Probab=99.20 E-value=8.1e-10 Score=79.96 Aligned_cols=114 Identities=13% Similarity=-0.052 Sum_probs=90.2
Q ss_pred HHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH--HHHHHHHHHHhhc
Q 031461 12 RKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY--SETSSLCTKVLEL 88 (159)
Q Consensus 12 ~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~ 88 (159)
....+|.++...| .+++++.++.+++...|.+. .+|..++.+...++.. ++++.++++++..
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~kal~~ 137 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKILSL 137 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh
Confidence 4455566666666 56777777777777766542 3478888888778764 6788899999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+|.+..+|..+|-++...|++++|+.++.+++..+|.|.+++.....+...+
T Consensus 138 dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 138 DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999888888776543
No 87
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.20 E-value=5.6e-10 Score=69.42 Aligned_cols=99 Identities=18% Similarity=-0.003 Sum_probs=86.6
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
+.+++.|..+-..|+.++|+.+|++++...... +....++..+|.++..+|++++|+..+++++...|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 457889999999999999999999999964332 22356788999999999999999999999999988
Q ss_pred c---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 91 L---NVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 91 ~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
+ +.......+.+++..|++++|+..+-.++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 788888899999999999999999988774
No 88
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.18 E-value=8.6e-10 Score=88.52 Aligned_cols=111 Identities=11% Similarity=0.005 Sum_probs=100.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
......|..+...|++++|+..+.+++...|.++ .++..+|.++...|++++|+..+++++.++|
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 3456678899999999999999999999987763 4589999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
+++.+++.+|.++...|++++|...+++++...|+++.+...-...
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999776654443
No 89
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.4e-09 Score=76.42 Aligned_cols=112 Identities=18% Similarity=0.166 Sum_probs=94.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al 86 (159)
++...-+|.+++..|++..|...|.+++++.++++.. +..+|.++.... .-.++...+++++
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 5667788999999999999999999999998887654 666666654433 5788999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
.+||.++.+.+.+|..++..|+|.+|+..|+..+.+.|.+..-...+...
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999998775544444443
No 90
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=2.8e-09 Score=77.16 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=102.3
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCCccHHHHHH
Q 031461 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYR 98 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~ 98 (159)
+...+.++.|+..+.++|.+.|.+ ..++..++.+...+| .+++++.++++++..+|.+..+|..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 456678999999999999997775 456899999999998 6899999999999999999999999
Q ss_pred HHHHHHhhCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 99 RSQAHLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 99 ~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
++.++..+|.. ++++.++.+++..+|.|..++...+-+...++..++. -.-+.++
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee-L~~~~~~ 168 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE-LEYCHQL 168 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH-HHHHHHH
Confidence 99999999874 7889999999999999999999999998888776543 3344443
No 91
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.14 E-value=4.8e-10 Score=75.50 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
++..++++|+.+-+-|-+..|.--|.+++.+.|.-| .+++.+|..+..-|+|+.|...|+.++++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~---------------~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH---------------HHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 588999999999999999999999999999977754 45999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
||.+..+..++|..++--|++.-|.+.+.+-.+-+|+||--.-++-...
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999985444444433
No 92
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.13 E-value=1.8e-09 Score=86.60 Aligned_cols=121 Identities=10% Similarity=0.030 Sum_probs=75.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------HHHHHHH------HHHHHHHhhHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEKHQAN------GLRLSCYLNNAACK 69 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~a~~~ 69 (159)
.+...+..+...++.|++..|+..|.++++..|.+++.-. ....... ......+..+|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3556788999999999999999999999999887642200 0000000 01111222335566
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
..+|+|++|+..+++++..+|+++.+++.++.++...++.++|+..++++...+|.+...
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 666666666666666666666666666666666666666666666666666666664443
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=3.4e-09 Score=78.55 Aligned_cols=122 Identities=17% Similarity=0.036 Sum_probs=106.7
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
..+..+...+..|+++.|...+...+...|+++ ..+...+.+++..++..+|.+.+++++.++|.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~ 372 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALALDPN 372 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence 345667788899999999999999888777653 33667889999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (159)
.+...+++|++|...|+.++|+..+.+.+..+|+|+..+..++.....++...+...
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 999999999999999999999999999999999999999999999988877666544
No 94
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=4.1e-09 Score=80.04 Aligned_cols=141 Identities=21% Similarity=0.182 Sum_probs=111.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..+...++|.+|+..|.+++.+....-..+ .+....++.|+|..|.+.|+|++|..+|++|+.+
T Consensus 240 va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 240 VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI 312 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 445566799999999999999999999999865321111 1334777999999999999999999999999876
Q ss_pred C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID-----PNN---RVVKLVYMELKDKQREYAKYQAEIFG 152 (159)
Q Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (159)
. |.-+..+...+.++...+++++|+..+++++++. +.| +.+...++.+....+++++.+. .|+
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~~k 391 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-LYK 391 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-HHH
Confidence 4 3447778889999999999999999999998773 233 5677778888888888877754 677
Q ss_pred HHhhh
Q 031461 153 TMLSK 157 (159)
Q Consensus 153 ~~~~~ 157 (159)
+...+
T Consensus 392 ~ai~~ 396 (508)
T KOG1840|consen 392 KAIQI 396 (508)
T ss_pred HHHHH
Confidence 66554
No 95
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.12 E-value=1.2e-10 Score=82.74 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
+++.++.+...+-.+..++..|.++.||+.|..+|.+.|.. ..+|..++.++++++.+-.|+.+|
T Consensus 107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~kp~~airD~ 171 (377)
T KOG1308|consen 107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKKPNAAIRDC 171 (377)
T ss_pred hHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccCCchhhhhh
Confidence 67788899999999999999999999999999999997765 445899999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
..++.++|+.+..+-.+|.+...+|+|.+|..++..+.+++-+ +.+-.++..+...
T Consensus 172 d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~ 227 (377)
T KOG1308|consen 172 DFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPN 227 (377)
T ss_pred hhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999888653 3334444444433
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.12 E-value=1.6e-09 Score=79.69 Aligned_cols=91 Identities=24% Similarity=0.302 Sum_probs=82.2
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+...|...+..|+|++|+..|+++|.++|+++.+++.+|.++..+|++++|+..+.+++.++|+++.++..++.+...++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHH
Q 031461 142 EYAKYQAEIFGT 153 (159)
Q Consensus 142 ~~~~~~~~~~~~ 153 (159)
++.+... .|.+
T Consensus 85 ~~~eA~~-~~~~ 95 (356)
T PLN03088 85 EYQTAKA-ALEK 95 (356)
T ss_pred CHHHHHH-HHHH
Confidence 8766543 3443
No 97
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.12 E-value=6.5e-10 Score=62.31 Aligned_cols=68 Identities=28% Similarity=0.280 Sum_probs=59.2
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHH
Q 031461 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR 99 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (159)
++..|+|++|+..|.+++...|.+ ..++..+|.|+...|++++|...+++++..+|+++.++.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 367899999999999999998876 44588999999999999999999999999999998887776
Q ss_pred HHH
Q 031461 100 SQA 102 (159)
Q Consensus 100 ~~~ 102 (159)
+.+
T Consensus 66 a~i 68 (68)
T PF14559_consen 66 AQI 68 (68)
T ss_dssp HHH
T ss_pred hcC
Confidence 653
No 98
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.11 E-value=3.4e-10 Score=65.27 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=57.2
Q ss_pred HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
....++.++|.++..+|+|++|+.++++++.+. |..+.++.++|.++...|++++|+.++++++.+
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 346779999999999999999999999999662 233778999999999999999999999999865
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=7.2e-10 Score=81.99 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=102.5
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|+..|..|+++.|...|..++.-+.+. ..+++|+|.++-.+|+.++|+.+|-+.-.+--+
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndasc---------------~ealfniglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDASC---------------TEALFNIGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchHH---------------HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 45668999999999999999999999764433 445899999999999999999999887776677
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
+..+++.++.+|..+.+-..|++++.++.++.|++|.+..-++.+..+-+.+.
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence 89999999999999999999999999999999999999999998886655543
No 100
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.10 E-value=1.4e-09 Score=62.73 Aligned_cols=74 Identities=23% Similarity=0.238 Sum_probs=61.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|.+++..|+|++|+.+|++++.+....++. .+....++.++|.++..+|++++|+.++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD--------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467889999999999999999999999999984333221 133477899999999999999999999999987
Q ss_pred cC
Q 031461 88 LE 89 (159)
Q Consensus 88 ~~ 89 (159)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 101
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.07 E-value=1.5e-09 Score=61.72 Aligned_cols=70 Identities=23% Similarity=0.308 Sum_probs=62.4
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 96 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 96 (159)
...+++.++|+.|+..+..++.+.|.++.. +..+|.++..+|++++|..++++++...|+++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 467899999999999999999998886543 89999999999999999999999999999998876
Q ss_pred HHHHH
Q 031461 97 YRRSQ 101 (159)
Q Consensus 97 ~~~~~ 101 (159)
..++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 65543
No 102
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.1e-08 Score=72.57 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=79.9
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-RVVKLVYMELK 137 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~ 137 (159)
...|+.+|..+....+++.|...+.+|++-+|.+..+-+.+|.+....|+|+.|++.++++++.+|+- +.+...+..|+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 45688888888889999999999999999999999999999999999999999999999999999986 67888888888
Q ss_pred HHHHHHHHHH
Q 031461 138 DKQREYAKYQ 147 (159)
Q Consensus 138 ~~~~~~~~~~ 147 (159)
..+++..+-.
T Consensus 260 ~~lg~~~~~~ 269 (389)
T COG2956 260 AQLGKPAEGL 269 (389)
T ss_pred HHhCCHHHHH
Confidence 8887765544
No 103
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.07 E-value=6.6e-09 Score=64.25 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=75.1
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYM 134 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~ 134 (159)
.++.+|..+...|++++|...+..++..+|++ +.+++.+|.++...|+++.|+..|+.++...|++ +.+...++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 47899999999999999999999999999876 6789999999999999999999999999999886 56677777
Q ss_pred HHHHHHHHHHHH
Q 031461 135 ELKDKQREYAKY 146 (159)
Q Consensus 135 ~~~~~~~~~~~~ 146 (159)
.+...+++..+.
T Consensus 84 ~~~~~~~~~~~A 95 (119)
T TIGR02795 84 MSLQELGDKEKA 95 (119)
T ss_pred HHHHHhCChHHH
Confidence 777666655444
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.07 E-value=1.2e-08 Score=80.64 Aligned_cols=124 Identities=10% Similarity=0.004 Sum_probs=105.8
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHH
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR 98 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 98 (159)
+.-..+....+.+-.-.++.+....+.. ..++.++|.+....|.+++|+..++.++++.|++..+...
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~ 125 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHT------------ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFIL 125 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhcccc------------HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3344555555666666666665555443 5669999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 99 RSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 99 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
++.++.+.+.+++|+..+++++..+|++..++..++.+..+++++.+... .|.++.
T Consensus 126 ~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~-~y~~~~ 181 (694)
T PRK15179 126 MLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADA-CFERLS 181 (694)
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999988765 676654
No 105
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.06 E-value=2.2e-09 Score=70.91 Aligned_cols=111 Identities=14% Similarity=0.013 Sum_probs=87.6
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HH
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VK 94 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~ 94 (159)
+.+|-.+.|..+...+...+...+. .....+++++|.++..+|++++|+..+.+++.+.|++ +.
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 73 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSY 73 (168)
T ss_pred cccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHH
Confidence 3445555566666666444433222 1235668999999999999999999999999887653 46
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+++++|.++...|++++|+..|++++.+.|.+...+..++.+...++
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999888888888877443
No 106
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=5.6e-10 Score=79.38 Aligned_cols=136 Identities=11% Similarity=0.032 Sum_probs=102.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC------------hHH-------HHHHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDE-------KHQANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~-------~~~~~~~~~~~~~~~a~~~~ 70 (159)
+..+...+.++-..+++++|+++|+.+++..+.+.+.- ++. ..+.-.....+++|+|.|++
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 34455666777777777777777777777765432110 000 01111222346999999999
Q ss_pred hhhCHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 71 KLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
--++++-++..|++++.... .-++.||++|.+....||+.-|..+|+-++..+|++.++...++.+..+.+....
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 99999999999999998653 3488999999999999999999999999999999999999999998877665543
No 107
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.05 E-value=1.2e-08 Score=80.97 Aligned_cols=123 Identities=18% Similarity=0.124 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+...++.++..|..+..+|+|+.|..+|.+++..++++... .++.+|+.++..|+++.|..+|+++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l--------------~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVL--------------PLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccc--------------cccchhHHHHHhchHHHHHHHHHHH
Confidence 45678889999999999999999999999999998776332 2889999999999999999999999
Q ss_pred hhcCCccHHHHHHHHHHHHhhC----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 86 LELEPLNVKALYRRSQAHLKTS----ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
+...|++.....-+|.+|...+ .-+.|.....+++...|.|..++-.++.+.....-
T Consensus 369 ~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~ 429 (1018)
T KOG2002|consen 369 LKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP 429 (1018)
T ss_pred HHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh
Confidence 9999999999999999999886 77889999999999999999999998888755433
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.05 E-value=4.2e-08 Score=63.28 Aligned_cols=98 Identities=19% Similarity=0.141 Sum_probs=82.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
....+..|..++..|++++|+..|..++...+.. .+...+.+.+|.+++..|+|++|+..++. +.-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 4556778999999999999999999999865322 33456788999999999999999999966 3444
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
+-.+.++..+|+++...|++++|+..|++++
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5567788899999999999999999999875
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.2e-08 Score=76.93 Aligned_cols=142 Identities=11% Similarity=0.015 Sum_probs=111.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------------------------------------C----
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-------------------------------------S---- 45 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------------------------~---- 45 (159)
...++...-+|.+....++=..||..+.+|++++|++. .
T Consensus 316 P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 316 PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGEN 395 (579)
T ss_pred hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCcc
Confidence 34577777888888888888888888888888777630 0
Q ss_pred ---------CChHHHHHHHH------------HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 031461 46 ---------FTDDEKHQANG------------LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHL 104 (159)
Q Consensus 46 ---------~~~~~~~~~~~------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 104 (159)
.+.....++.. ....+...||..|...|+|++|+.||+.||..+|.+...|.++|-.+.
T Consensus 396 ~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 396 EDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred ccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 00011111111 234467889999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461 105 KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 105 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (159)
.-.+..+|+..|.+|+++.|.-..++..++..-..++-+++.-+
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999988888888887777777766543
No 110
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.4e-09 Score=77.95 Aligned_cols=120 Identities=18% Similarity=0.097 Sum_probs=102.5
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC----
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE---- 89 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 89 (159)
+-.|..+...+++..|-.+|..|+.+.|.+|-. +..+|.+.+..+.|.+|..+|+.++..-
T Consensus 384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv---------------~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV---------------LHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh---------------hhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 346777888888888888888888888887644 8899999999999999999999998321
Q ss_pred ---CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461 90 ---PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (159)
+.|...+.++|-++.+++.+.+|+..|++++.+.|.+++++..++-|.-.++.......
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 34677799999999999999999999999999999999999999999888777666544
No 111
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.03 E-value=4.8e-09 Score=74.76 Aligned_cols=120 Identities=19% Similarity=0.177 Sum_probs=83.0
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
......+...++++.+...+..+....+ .+. ...++..+|.++...|++++|+.+++++++++|+++
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPA-APD------------SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T----T-------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccC-CCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3344556666777777777666554221 111 144577888888899999999999999999999888
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+...++.++...|+++++...+.......|.++..+..++.+...+++.++.
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence 88888888888889998888888888877788888888888888777766544
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.01 E-value=9e-09 Score=68.31 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=75.5
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
...+++++|.++...|++++|+.++++++...|+. ..+++.+|.++...|++++|+..+.+++...|.+......++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35568999999999999999999999999887653 578999999999999999999999999999999998888888
Q ss_pred HHHHHHHH
Q 031461 135 ELKDKQRE 142 (159)
Q Consensus 135 ~~~~~~~~ 142 (159)
.+...+++
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 87766544
No 113
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.98 E-value=4e-09 Score=78.19 Aligned_cols=68 Identities=19% Similarity=0.114 Sum_probs=62.8
Q ss_pred HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH---HHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA---LYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
+-....++|+|.++..+|+|++|+..|+++|.++|++..+ |+++|.+|..+|++++|+.++++++.+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3346679999999999999999999999999999999855 9999999999999999999999999973
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.4e-07 Score=64.99 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=101.5
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------H------HHHHHHHHHHHHHhhHHHHHhhhhCH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------D------EKHQANGLRLSCYLNNAACKLKLEDY 75 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~a~~~~~~~~~ 75 (159)
-.|..+-..|+|++|+++|...+.-+|.+..... + ...+.-.....+|..++..|+..|+|
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 3466666789999999999998887665422110 0 11112222345688889999999999
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 76 SETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI 150 (159)
Q Consensus 76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (159)
++|.-|+++.+-+.|.++-.+.++|++++-.| ++.-|.++|.+++++.|.+..++..+-.+-..+.+..+.+-+.
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~~k~ 248 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAELKR 248 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999888777 5566889999999999988888888888887777666655433
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=6.1e-08 Score=66.75 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=62.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al 86 (159)
.+...+.+..|+..|+|..|+-+|+.++-+.|.+| .++..+|.+++-+| ++.-|..+|.+++
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~---------------l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP---------------LYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888877766553 23567777766655 5677778888888
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKA 112 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A 112 (159)
+++|.+..+++.+..|-...-+...+
T Consensus 219 kl~~~~~ral~GI~lc~~~la~~sk~ 244 (289)
T KOG3060|consen 219 KLNPKNLRALFGIYLCGSALAQISKA 244 (289)
T ss_pred HhChHhHHHHHHHHHHHHHHHHHhHH
Confidence 88887777777777766555444433
No 116
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.96 E-value=7.9e-08 Score=72.14 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+...+......|...+..|+|..|.+...++.+..|.. ...+...|.+...+|+++.|..++.++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---------------~~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---------------VLNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34467778888999999999999999999888775542 223556677778888888888888888
Q ss_pred hhcCCccH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 86 LELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 86 l~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
.+..|++. .+....+.++...|+++.|...+++.+...|+++.+...+..+....++..+
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~ 205 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQA 205 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence 87777764 4555568888888888888888888888888888887777777766666543
No 117
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.95 E-value=3.7e-09 Score=61.83 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=66.9
Q ss_pred hhCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461 72 LEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (159)
.|+|+.|+..+++++..+|. +...++.+|.||+..|+|++|+..+++ ...+|.+..+...++.+...+++.++...
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999999995 577788899999999999999999999 88899998999999999999999877643
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.94 E-value=2.6e-08 Score=74.00 Aligned_cols=107 Identities=18% Similarity=0.081 Sum_probs=89.6
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
-.|.+++..++..+|++.+.+++.+.|..+ .+..++|.++++.|++.+|+..++..+.-+|+++.
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALDPNSP---------------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 457889999999999999999999988763 44889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
.|..+|++|..+|+..+|...+-....+..+-..+...+...
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999877777777776666665544444444433
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=3.8e-08 Score=67.84 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=77.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
....|...+..|+|..|+..+.++..++|+++++|.-+|.+|-+.|+++.|...|.+++++.|+++.+...++.....-+
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 44588899999999999999999999999999999999999999999999999999999999999999998888776655
Q ss_pred HHHHH
Q 031461 142 EYAKY 146 (159)
Q Consensus 142 ~~~~~ 146 (159)
+....
T Consensus 183 d~~~A 187 (257)
T COG5010 183 DLEDA 187 (257)
T ss_pred CHHHH
Confidence 55443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=78.79 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=88.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
..|...+++++|.++.++++..+++.|-. ...|+++|.|..+++++..|..+|.+.+.++|++..
T Consensus 490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq---------------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 490 SLALLILSNKDFSEADKHLERSLEINPLQ---------------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCccc---------------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 33444556677777777777777775543 344888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+|.+++-+|...++-.+|...+.+|++.+-.+..++....-+-...+..++.
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence 8888888888888888888888888888877777777666666666555443
No 121
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.90 E-value=9.7e-08 Score=73.19 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=74.9
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..+++.+|.+|-..|++++|+.+++++|.+.|+.++.++..|.++.+.|++.+|..++..|..+++.|--+..-..+-.-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999998666655555544
Q ss_pred HHHHHHH
Q 031461 139 KQREYAK 145 (159)
Q Consensus 139 ~~~~~~~ 145 (159)
+-++.++
T Consensus 274 Ra~~~e~ 280 (517)
T PF12569_consen 274 RAGRIEE 280 (517)
T ss_pred HCCCHHH
Confidence 4444433
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.89 E-value=1.3e-07 Score=74.66 Aligned_cols=100 Identities=19% Similarity=0.198 Sum_probs=93.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+..+|.++-++|+.+++..++..|-.+.|.+++ .|..++....++|.+..|.-||.+||+.+
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------------~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------------LWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------------HHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 345788999999999999999999999999887753 38889999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
|.+.+..++++.+|.+.|++..|...|.+++.+.|
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=1.4e-07 Score=75.97 Aligned_cols=114 Identities=14% Similarity=0.020 Sum_probs=89.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+........+...+++++|+.....+++..|+.... |+.+|..+...+++.++... .++.+-
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 3455667778889999999999999999998876443 66777777777766666555 555554
Q ss_pred CccH-------------------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 90 PLNV-------------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 90 ~~~~-------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+.+. .+++.+|.||-.+|++++|...|++++.++|+|+.+...++-.....
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence 4444 88999999999999999999999999999999999888888877666
No 124
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.88 E-value=2.1e-07 Score=70.96 Aligned_cols=109 Identities=21% Similarity=0.180 Sum_probs=91.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
.-+..+..+|..+++.|+|.+|..++..|+++........ .+-....+.+++..+..++++++|..+++++++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4567788999999999999999999999999976522221 122456688999999999999999999999987
Q ss_pred cC--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 88 LE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 88 ~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
+- |.-+..+.++|.+|+..|+|++|...|++|+...
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 63 2347888999999999999999999999998774
No 125
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.88 E-value=2.2e-07 Score=71.49 Aligned_cols=118 Identities=13% Similarity=0.009 Sum_probs=90.8
Q ss_pred HHHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCC--------------CC---hHHHHHH------------HHH
Q 031461 10 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHS--------------FT---DDEKHQA------------NGL 57 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~--------------~~---~~~~~~~------------~~~ 57 (159)
+-.+.-+|..++..+. +..|+.+|.++++++|+... .. ....... .+.
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~ 418 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV 418 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence 4456667777766544 88999999999999887311 00 1111010 111
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
...++..+|..+...|++++|...+++++.++| +..++..+|.++...|++++|+..|++|+.++|.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 124566778888889999999999999999999 5789999999999999999999999999999999875
No 126
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.88 E-value=4.5e-08 Score=78.78 Aligned_cols=113 Identities=11% Similarity=-0.008 Sum_probs=94.6
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|..+...|+|+.|++.|+++++..|.++. ++..++..+...+++++|+..+++++..+|.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~---------------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPD---------------LISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 3444577888999999999999999999888743 3567789999999999999999999999998
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+... ..++.++...++..+|+..+++++..+|++..+...+-.+....
T Consensus 169 ~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~ 216 (822)
T PRK14574 169 VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRN 216 (822)
T ss_pred hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 6554 66677777788888899999999999999998877776665443
No 127
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=3.9e-08 Score=72.16 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=82.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.....|..+...|++++|+..+++++...|.++ .++..+|.++...|++++|+.++++++...|.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 445677888999999999999999999977763 33788999999999999999999999998764
Q ss_pred cH----HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 92 NV----KALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 92 ~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
.+ ..+..+|.++...|++++|+..|.+++...|
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 32 3466799999999999999999999887666
No 128
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.88 E-value=7.3e-08 Score=68.89 Aligned_cols=137 Identities=22% Similarity=0.242 Sum_probs=97.2
Q ss_pred HHHHHHHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 8 EACERKKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
..+..+...|..+... |+++.|+.+|.+|+++....... .....++.++|.++..+|+|++|+..|+++.
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~---------~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP---------HSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3577788889999888 99999999999999997654422 2345678899999999999999999999998
Q ss_pred hcCCc------cH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPL------NV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 87 ~~~~~------~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
...-. +. ..++..+.|+...||.-.|...+++....+|.-... ....-+...+...+..+...|...
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHTT-CCCHHHH
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 75321 22 456788889999999999999999999999854332 222233344455555554444443
No 129
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.8e-07 Score=65.89 Aligned_cols=115 Identities=18% Similarity=0.082 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK 105 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 105 (159)
.+..+.-.+..+..+|++... |..+|.+|+.+|++..|...|.+++++.|+++..+..+|.+++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~ 202 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY 202 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455556666666666666543 99999999999999999999999999999999999999999876
Q ss_pred hC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 106 TS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 106 ~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
.. ...++...+.+++.++|+|..+...++......+++.+.-. .+..|..
T Consensus 203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~-~Wq~lL~ 255 (287)
T COG4235 203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAA-AWQMLLD 255 (287)
T ss_pred hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH-HHHHHHh
Confidence 64 56678999999999999999999999998888777765532 4444443
No 130
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.87 E-value=2.2e-07 Score=69.56 Aligned_cols=125 Identities=15% Similarity=0.165 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+...+......|...+..|+|+.|.+...++-+. .+.+ ...+...+......|+++.|..++.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~p-----------~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQP-----------VVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccch-----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3346677788888888899999888666554332 1110 122444566668888888888888888
Q ss_pred hhcCCccHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 86 LELEPLNVKA-LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 86 l~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
.+.+|++..+ ....+.++...|+++.|...+++....+|+++.+...+..+....++-.+
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 8888877433 34458888888888888888888888888888888888777766655443
No 131
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.86 E-value=3.5e-07 Score=55.99 Aligned_cols=113 Identities=18% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+..+-.....|...+..|-|++|...|+++++.....| +++..+...+..-++..++..+..+|+|++++.....++
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL 82 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRAL 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34455566778888899999999999999999955444 355566677778888999999999999999999888888
Q ss_pred hc-------CC----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 87 EL-------EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 87 ~~-------~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.. +. .|+.+.++++.++..+|+.++|+..|+.+-.+
T Consensus 83 ~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 83 RYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 53 32 36889999999999999999999999987543
No 132
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.85 E-value=2e-07 Score=69.97 Aligned_cols=130 Identities=15% Similarity=-0.017 Sum_probs=101.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
........|..+...|+++.|+....++++..|++.... ...-........++.+.++..++++++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-------------hHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 355667788899999999999999999999987764320 0122223334467889999999999999
Q ss_pred CCccH--HHHHHHHHHHHhhCCHHHHHHHHH--HHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNV--KALYRRSQAHLKTSELEKAEADIK--RALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT 153 (159)
Q Consensus 89 ~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (159)
.|+++ ..+..+|.+++..|++++|.++|+ .++...|++.. ...++.+...+++.++. ...|++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A-~~~~~~ 395 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA-AAMRQD 395 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHH
Confidence 99999 888899999999999999999999 57788897766 44888888888776554 334444
No 133
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.85 E-value=9.7e-08 Score=62.68 Aligned_cols=107 Identities=21% Similarity=0.120 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHh---hhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461 25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL---KLEDYSETSSLCTKVLELEPLNVKALYRRSQ 101 (159)
Q Consensus 25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (159)
-|+.|.+.++.....+|.+++. .--+.-++..++.... ....+++|+.-++++|.++|+...+++.+|.
T Consensus 6 ~FE~ark~aea~y~~nP~Dadn--------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADN--------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHH--------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHH--------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 3677888888888877765332 1222334445554422 3356889999999999999999999999999
Q ss_pred HHHhhC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 102 AHLKTS-----------ELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 102 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
+|..++ -|++|..+|++|...+|+|...+..+....+.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka 126 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA 126 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 999887 38889999999999999998887777766543
No 134
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.84 E-value=7.7e-07 Score=60.64 Aligned_cols=123 Identities=11% Similarity=-0.007 Sum_probs=91.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-----------hCHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----------EDYSET 78 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A 78 (159)
.+.....|..++..|+|..|+..|...+...|.++.. ..+++.+|.++..+ +...+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 4567788999999999999999999999999987754 44567777776554 345689
Q ss_pred HHHHHHHhhcCCccHHH-----------------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKA-----------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV---KLVYMELKD 138 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~-----------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~ 138 (159)
...++..+...|++..+ -+..|..|...|.|..|+..++.++...|+.+.. ...+.....
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~ 189 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYY 189 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 99999999999987332 3458999999999999999999999999998654 444444555
Q ss_pred HHHHHH
Q 031461 139 KQREYA 144 (159)
Q Consensus 139 ~~~~~~ 144 (159)
.++...
T Consensus 190 ~l~~~~ 195 (203)
T PF13525_consen 190 KLGLKQ 195 (203)
T ss_dssp HTT-HH
T ss_pred HhCChH
Confidence 555544
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2e-07 Score=68.46 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=109.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH---------HHHH----------HHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD---------EKHQ----------ANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---------~~~~----------~~~~~~~~~~~~a~~~~ 70 (159)
+..+...|.+++..|++.+|+..|+++.-++|.....-+. ...+ .......-|..-+....
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4557788999999999999999999999988764322210 0111 11112223555566677
Q ss_pred hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 147 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
..++|..|+.+.+++|+.+|.+..+++..|.++...|+.++|+-.|+.|..+.|-+-.+...+-.+.-..++.++..
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999888888888877666665543
No 136
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=3e-08 Score=70.77 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=95.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+.+...|..++..++++.++..|.+++......... ..+|+|+|.+....|++--|..+|+-++..+
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh------------hhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 4567778888999999999999999999886654332 6779999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
|++..++.++|.+-.+.|+.+.|...+..+-...|+-.+.
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccc
Confidence 9999999999999999999999999999999999875443
No 137
>PRK15331 chaperone protein SicA; Provisional
Probab=98.82 E-value=8.5e-08 Score=62.25 Aligned_cols=95 Identities=13% Similarity=-0.011 Sum_probs=84.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
....+..|.-+...|++++|...|.-+...+|.+++.++.+|-|+..+++|++|+..|-.+..++++|+......+.|.-
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 44577888889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
.+++...... -|..+
T Consensus 117 ~l~~~~~A~~-~f~~a 131 (165)
T PRK15331 117 LMRKAAKARQ-CFELV 131 (165)
T ss_pred HhCCHHHHHH-HHHHH
Confidence 8887766543 44433
No 138
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.81 E-value=1.4e-06 Score=60.31 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=99.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
-+..+.+.|...++.|+|++|+..|+.+....|..+-. ..+...++.++.+.+++++|+..+++-+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999887766543 456788999999999999999999999999
Q ss_pred CCcc---HHHHHHHHHHHHhhC--------CHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLN---VKALYRRSQAHLKTS--------ELEKAEADIKRALTIDPNN---RVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 89 ~~~~---~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~ 145 (159)
.|++ ..++|.+|.+++..- -...|+..|+..+...|+. +.+...+..+..++...+-
T Consensus 101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 9877 557788888876553 3456888899999999987 4455555555555555433
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.81 E-value=1.5e-07 Score=66.45 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=74.5
Q ss_pred HHHhhHHHHH-hhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHH
Q 031461 60 SCYLNNAACK-LKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLV 132 (159)
Q Consensus 60 ~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 132 (159)
...+..|... +..|+|++|+..|+..+...|++ +.+++.+|.+|+..|++++|+..|.+++...|++ +.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456666665 56799999999999999999988 6899999999999999999999999999999986 555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 031461 133 YMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
++.+...+++..+. ...|.++.
T Consensus 223 lg~~~~~~g~~~~A-~~~~~~vi 244 (263)
T PRK10803 223 VGVIMQDKGDTAKA-KAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHH-HHHHHHHH
Confidence 66666655554443 33555443
No 140
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.78 E-value=3.5e-06 Score=54.30 Aligned_cols=111 Identities=21% Similarity=0.170 Sum_probs=86.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCT 83 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 83 (159)
+.+...|......++...++..+.+++.+.....- +....-.........+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 44455677777889999999999999998654321 11133345667777788899999999999999999999
Q ss_pred HHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 84 KVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 84 ~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
+++..+|.+..++..+-.+|...|+...|+..|.++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988743
No 141
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=4e-07 Score=66.80 Aligned_cols=143 Identities=14% Similarity=-0.001 Sum_probs=107.6
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-------------Ch--HHHH-------HHHHHHHHHHhhHHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------TD--DEKH-------QANGLRLSCYLNNAAC 68 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~--~~~~-------~~~~~~~~~~~~~a~~ 68 (159)
+...-.|..++..|+++.|+..+.+++...|.+... .. .... ...+........+|.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 123 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG 123 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence 445567889999999999999999999987765411 00 0000 0111222345578889
Q ss_pred HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHHHH
Q 031461 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV----VKLVYMELKDKQREYA 144 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~ 144 (159)
+...|++++|+..+++++.++|+++.++..+|.+++..|++++|+..+.+++...|.++. .+..+..+....++..
T Consensus 124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999875433 3345677777677765
Q ss_pred HHHHHHHHHH
Q 031461 145 KYQAEIFGTM 154 (159)
Q Consensus 145 ~~~~~~~~~~ 154 (159)
+... .|...
T Consensus 204 ~A~~-~~~~~ 212 (355)
T cd05804 204 AALA-IYDTH 212 (355)
T ss_pred HHHH-HHHHH
Confidence 5533 44443
No 142
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.75 E-value=6.8e-08 Score=71.82 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+..+|..++..|+|++|+..|+++|.+.|++... ..+|+|+|.||..+|++++|+.++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457889999999999999999999999999998876431 2458999999999999999999999999
Q ss_pred hcC
Q 031461 87 ELE 89 (159)
Q Consensus 87 ~~~ 89 (159)
.+.
T Consensus 140 els 142 (453)
T PLN03098 140 RDY 142 (453)
T ss_pred Hhc
Confidence 983
No 143
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.75 E-value=3.5e-07 Score=71.29 Aligned_cols=119 Identities=19% Similarity=0.115 Sum_probs=103.7
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
..-.|..+...+..++|..+..++-.+++.. ..+|+..|.++...|++.+|.+.|..++.++|++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h 717 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH 717 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence 3445666667778888888887777765543 5679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEA--DIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+.....+|.++...|+-.-|.. .+..+++++|.|+++|..++.+.+..+..++.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 9999999999999998888888 99999999999999999999999998877643
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.75 E-value=2.6e-07 Score=68.54 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=33.4
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+...|..++..++++.|+..+++++.+.|++..+|+.++.+|..+|++++|+..+..+
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 4455555555555555655555555555555555555666666666665555555444
No 145
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=1.1e-06 Score=62.73 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
.++++.-+.+.+..+....+.+.|+..+.+|+..+|..... -.-+|.++...|+|+.|+..++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA---------------si~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA---------------SIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh---------------hhhhhHHHHhccchHHHHHHHHHH
Confidence 56788889999999999999999999999999998876543 567899999999999999999999
Q ss_pred hhcCCcc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461 86 LELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 86 l~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 130 (159)
++.+|.. +...-.+..||.++|+.++...++.++....++.....
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l 286 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAEL 286 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence 9999987 67778899999999999999999999999988764433
No 146
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.5e-07 Score=67.57 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=86.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...+-++.+.+.|..|+...+++|.+.|.+ ..+++.+|.++..+|+|+.|+.+|+++++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------------VKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 3447788999999999999999999999998877 4559999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHH-HHHHHHHHhcCC
Q 031461 90 PLNVKALYRRSQAHLKTSELEKA-EADIKRALTIDP 124 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~~p 124 (159)
|.|-.+...+..+..+..++.+. .+.|.+.+..-+
T Consensus 322 P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 322 PSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99988888888888777766664 777888776543
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=1.7e-07 Score=75.02 Aligned_cols=137 Identities=11% Similarity=0.077 Sum_probs=109.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---------HHHHHH------------HHHHHHHHhhHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---------DEKHQA------------NGLRLSCYLNNAAC 68 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~------------~~~~~~~~~~~a~~ 68 (159)
+..+.-.|..|...-+...|..+|.+|.++++.+...-. .++... ......-|..+|..
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 455667788887777889999999999999876432111 111111 11122235568889
Q ss_pred HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
|.+.+++..|+..++.+++.+|.+..+|..+|++|...|++.-|++.|.++..+.|.+.-+..-.+.++...+++++.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888888888777777654
No 148
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.71 E-value=4.5e-07 Score=63.20 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=78.6
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYME 135 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~ 135 (159)
.++.|.-+++.|+|..|..-|..-++..|++ +.++|++|++++..|+|++|...|..+.+-.|.+ ++...-++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6899999999999999999999999999876 8899999999999999999999999999998877 456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 031461 136 LKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~ 156 (159)
+..++++.++. ..++..+.+
T Consensus 224 ~~~~l~~~d~A-~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEA-CATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHH-HHHHHHHHH
Confidence 76666665444 335555543
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.70 E-value=4.3e-07 Score=64.96 Aligned_cols=105 Identities=19% Similarity=0.150 Sum_probs=75.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-hCHHHHHHHHHHHhh
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE 87 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~ 87 (159)
.+..+.+.|..+ +..++++|+.+|.+++.+....... .....++.++|.+|... |++++|+.+|++|+.
T Consensus 74 Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~---------~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 74 AAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRF---------SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-H---------HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455444444 4447777777777777775544332 33356788999999998 999999999999997
Q ss_pred cCC------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 88 LEP------LNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 88 ~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
+.. ....++...|.++..+|+|++|+..|+++....
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 632 126678899999999999999999999997654
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.70 E-value=6.8e-07 Score=66.40 Aligned_cols=107 Identities=17% Similarity=0.094 Sum_probs=96.1
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461 22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 101 (159)
Q Consensus 22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (159)
..++++.|+..+++.....|. . ...++.++..+++-.+|+..+++++...|.+...+...+.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---v---------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---V---------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---H---------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 457899999999987776433 2 4568899999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 102 AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 102 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+...++++.|+...+++..+.|++...+..+..++..+++.++.
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999998887664
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.70 E-value=9.4e-07 Score=55.03 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=72.5
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---cHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPL---NVKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYM 134 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~ 134 (159)
+.+++|.++-.+|+.++|+..|++++..... -..+++.+|.++..+|++++|+..++.++...|+ +..+...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 4789999999999999999999999997543 3789999999999999999999999999999898 666666666
Q ss_pred HHHHHHHHHHHH
Q 031461 135 ELKDKQREYAKY 146 (159)
Q Consensus 135 ~~~~~~~~~~~~ 146 (159)
.+....++.++.
T Consensus 83 l~L~~~gr~~eA 94 (120)
T PF12688_consen 83 LALYNLGRPKEA 94 (120)
T ss_pred HHHHHCCCHHHH
Confidence 666655555443
No 152
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.69 E-value=2.5e-06 Score=59.76 Aligned_cols=116 Identities=8% Similarity=-0.004 Sum_probs=91.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh----------------
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---------------- 73 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---------------- 73 (159)
.......|..+++.++|++|+..|++.++..|+++.. ..+++.+|.++..++
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD 136 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVLYMRGLTNMALDDSALQGFFGVDRSDRD 136 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------HHHHHHHHHhhhhcchhhhhhccCCCccccC
Confidence 3446789999999999999999999999999998876 455778887754433
Q ss_pred --CHHHHHHHHHHHhhcCCccHH---H--------------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 74 --DYSETSSLCTKVLELEPLNVK---A--------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 74 --~~~~A~~~~~~al~~~~~~~~---~--------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
...+|+..++..++..|++.. + -+..|..|.+.|.|..|+.-++.++...|+.+.....+.
T Consensus 137 ~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~ 216 (243)
T PRK10866 137 PQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALP 216 (243)
T ss_pred HHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 235788999999999998732 2 334788899999999999999999999998865555444
Q ss_pred HHH
Q 031461 135 ELK 137 (159)
Q Consensus 135 ~~~ 137 (159)
.+.
T Consensus 217 ~l~ 219 (243)
T PRK10866 217 LME 219 (243)
T ss_pred HHH
Confidence 443
No 153
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=1.2e-06 Score=65.40 Aligned_cols=132 Identities=13% Similarity=-0.008 Sum_probs=105.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---------HHHHHH----------HHHHHHHHhhHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---------DEKHQA----------NGLRLSCYLNNAACK 69 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---------~~~~~~----------~~~~~~~~~~~a~~~ 69 (159)
-++.+.+.+++|-...+..+||++|.++..+.|++|..-. .+..+. -+-...+.-.+|..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 4677888888888888999999999999888887653210 111111 111123455788889
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+...-+++|+.+++++--+.|+-.+.....+.|+.+.|+|+.|+..|+..-+-.|.|..+...+-++-..+
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999988888777765444
No 154
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=2e-07 Score=70.25 Aligned_cols=120 Identities=21% Similarity=0.095 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh---hCHHHHHH
Q 031461 4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---EDYSETSS 80 (159)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~~~~A~~ 80 (159)
-+-...++..+..|+..+..+.+..||..|.+++...|.. ..+|.|+|.++++. |+...|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence 3455678999999999999999999999999999986653 45688999998885 48889999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
+|..+++++|...+++++++.++..++.+.+|+.+..-+....|.+........-+..
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~r 490 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPR 490 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhcccc
Confidence 9999999999999999999999999999999999988888888877555444444333
No 155
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.66 E-value=9.6e-07 Score=66.13 Aligned_cols=124 Identities=12% Similarity=0.031 Sum_probs=96.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.......|..+...|+.+.|.....++++. +.++. +....+. ...+++++++..++..++..
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------------l~~l~~~--l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------------LVLLIPR--LKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------------HHHHHhh--ccCCChHHHHHHHHHHHhhC
Confidence 445666788899999999999999999883 32221 1122222 34589999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGT 153 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (159)
|+++..++.+|.++...+++++|...|++++...|++.. ...+..+....++.++. ...|+.
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A-~~~~~~ 386 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA-AAMRRD 386 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH-HHHHHH
Confidence 999999999999999999999999999999999998755 44788888877776554 334443
No 156
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.65 E-value=7.4e-08 Score=46.28 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666654
No 157
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.64 E-value=1.2e-07 Score=48.45 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4455555555555555555555555555555555544443
No 158
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=1.1e-06 Score=68.42 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=74.5
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.+|......++|.++..+++..++++|-....||.+|.+..++++++.|..+|.+++.++|++..+++.+...+..++++
T Consensus 490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 490 SLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 34444566799999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred HH
Q 031461 144 AK 145 (159)
Q Consensus 144 ~~ 145 (159)
.+
T Consensus 570 ~r 571 (777)
T KOG1128|consen 570 KR 571 (777)
T ss_pred HH
Confidence 44
No 159
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.62 E-value=4e-08 Score=47.24 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=31.2
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHH
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAE 113 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~ 113 (159)
+|+++|+++|+++.+++++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999999986
No 160
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.61 E-value=2.3e-07 Score=66.83 Aligned_cols=92 Identities=17% Similarity=0.156 Sum_probs=80.0
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
.-..|+.|+++|.|++|+.||.+++..+|.++..+.+++.+|+++..|..|..++..|+.++..-..++...+..+..++
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35679999999999999999999999999999999999999999999999999999999999888888888888887777
Q ss_pred HHHHHHHHHHHHH
Q 031461 142 EYAKYQAEIFGTM 154 (159)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (159)
...+.. +.+.++
T Consensus 180 ~~~EAK-kD~E~v 191 (536)
T KOG4648|consen 180 NNMEAK-KDCETV 191 (536)
T ss_pred hHHHHH-HhHHHH
Confidence 665543 244443
No 161
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.59 E-value=1.6e-07 Score=44.98 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
+.+++.+|.++..+|++++|+.+|++++.++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 162
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.58 E-value=7.1e-07 Score=47.18 Aligned_cols=49 Identities=31% Similarity=0.401 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
+++|.+|..++++|+|++|..+...+++++|+|..+......+..++.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999999888888777654
No 163
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.57 E-value=1.6e-07 Score=47.89 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
++..+|..|..+|++++|+..++++++.+|+++.++..+|.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 478999999999999999999999999999999999998863
No 164
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.55 E-value=2.7e-06 Score=65.88 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=63.3
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
...++.++|+.+++.|++..|.- ..+|+.+|+++..+++.+.|...|...++..|.++..|+.++
T Consensus 662 r~ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHhhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 34455566666666666554432 344666666666666666666666666666666666666666
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 101 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
.+-...|+.-.|...+.++.--+|.|...+...-++..+.+
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence 66666666666666666666666666555444444443333
No 165
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.54 E-value=1.8e-07 Score=44.92 Aligned_cols=33 Identities=33% Similarity=0.542 Sum_probs=29.8
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 458999999999999999999999999999974
No 166
>PRK11906 transcriptional regulator; Provisional
Probab=98.54 E-value=1.3e-06 Score=65.19 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAH 103 (159)
Q Consensus 24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 103 (159)
..-.+|...-.+++++++.++ .+...+|.+....++++.|...|++++.++|+.+.+++..|.+.
T Consensus 318 ~~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 345678888888888877764 45888999999999999999999999999999999999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 104 LKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 104 ~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
...|+.++|+..++++++++|.-.
T Consensus 383 ~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 383 FHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHcCCHHHHHHHHHHHhccCchhh
Confidence 999999999999999999999764
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.52 E-value=4e-06 Score=62.70 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=92.6
Q ss_pred HHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh---------hCHHHHHHH
Q 031461 14 KHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL---------EDYSETSSL 81 (159)
Q Consensus 14 ~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~ 81 (159)
.-+|...+.++ ....|+.+|.+|+...+-+|.. ..+|..+|.|+... ..-.+|...
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK------------TECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 44555554444 3567888899999443334443 56688888887664 245688899
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
..+++.++|.++.++..+|.++...++++.|...|++++.++|+...++...+-+...-++.
T Consensus 327 A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 327 LDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKI 388 (458)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999888888765544443
No 168
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=3.5e-06 Score=53.62 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
.+++.|...+..|+|.+|+..++.+....|.. ..+.+.+|.+|+..+++++|+..+++.++++|.++.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 37889999999999999999999999988754 7899999999999999999999999999999998653
No 169
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=2.5e-06 Score=68.98 Aligned_cols=112 Identities=9% Similarity=-0.020 Sum_probs=92.7
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc--
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-- 88 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 88 (159)
..++.+|..|-+.|++++|+..|.++++++|.++ .+++++|..+... ++++|+.++.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~---------------~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNP---------------EIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999987764 4488888888888 888888888888754
Q ss_pred ------------------CCccHHH--------------------HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461 89 ------------------EPLNVKA--------------------LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 89 ------------------~~~~~~~--------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 130 (159)
+|++... +..+-.+|...++|++++..++.++.++|.|..+.
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 3444333 22233788889999999999999999999999999
Q ss_pred HHHHHHHH
Q 031461 131 LVYMELKD 138 (159)
Q Consensus 131 ~~~~~~~~ 138 (159)
..+..|..
T Consensus 261 ~~l~~~y~ 268 (906)
T PRK14720 261 EELIRFYK 268 (906)
T ss_pred HHHHHHHH
Confidence 99988886
No 170
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=1.7e-06 Score=62.12 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=30.0
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH-HHHHHHHHHHHhcCCCcH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-EKAEADIKRALTIDPNNR 127 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~ 127 (159)
++.+|.|++.+|+|++|...+.+++..+|.++.++.+++.+...+|+- +.+.+.+.+....+|+++
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 444455555555555555555555555555555555555554444444 223334444444444443
No 171
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.47 E-value=4.6e-06 Score=64.65 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=75.6
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+|+..+....-++..++|+..++++++..|+..+.|..+|+++.+.++.+.|...|...++.-|+....+..+.++.+..
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~ 732 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence 56677777788999999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred HH
Q 031461 141 RE 142 (159)
Q Consensus 141 ~~ 142 (159)
+.
T Consensus 733 ~~ 734 (913)
T KOG0495|consen 733 GQ 734 (913)
T ss_pred cc
Confidence 53
No 172
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.47 E-value=3.5e-07 Score=67.33 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 84 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 84 (159)
++......+..+|+.||-.|+|+.||..-..-+.+...-.+. .-...++.|+|.||..+|+|+.|.++|..
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---------AaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---------AAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---------HHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 345566778889999999999999999988888875543221 12245699999999999999999999999
Q ss_pred Hhhc----CC--ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 85 VLEL----EP--LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 85 al~~----~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
++.+ .. ..+...|.+|..|.-+.++++|+.++.+-+.+..
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 32 2366789999999999999999999998776644
No 173
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.45 E-value=3.1e-05 Score=51.58 Aligned_cols=117 Identities=18% Similarity=0.281 Sum_probs=94.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+.....+|+...+.|++.+|...|.+++.-.--+ + ..+++.+++..+..+++..|...++...+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d-------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-D-------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-C-------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 3446678999999999999999999998642111 1 4558899999999999999999999999998
Q ss_pred Cc--cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 90 PL--NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 90 ~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
|. .+...+..|.++...|.+.+|...|+.++...|+- .+.-........++
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg 207 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG 207 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence 85 58889999999999999999999999999999964 34444444444443
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5.8e-06 Score=55.52 Aligned_cols=94 Identities=22% Similarity=0.241 Sum_probs=78.9
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLN-----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
+-.-|.-++..|+|++|..-|..||.+.|.. .-.|.++|-++.+++.++.|+..+.+++.+.|.+..+....+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 4455777899999999999999999999865 45678899999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 031461 137 KDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~ 156 (159)
+..+.++.+. -..|+++..
T Consensus 178 yek~ek~eea-leDyKki~E 196 (271)
T KOG4234|consen 178 YEKMEKYEEA-LEDYKKILE 196 (271)
T ss_pred HHhhhhHHHH-HHHHHHHHH
Confidence 8888666554 336666543
No 175
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.44 E-value=5.8e-06 Score=63.71 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=89.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.+-.+|..+...|+-++|..+...++..++.+ ..+|..+|.++...++|++|+.+|..|+.++
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S---------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS---------------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccCccc---------------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 5566677888888888888888888888765443 3568888888888888888888888888888
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
|+|...+.-++..-.+.++++-....-.+.+++.|.+-..+...+..+-.+
T Consensus 106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL 156 (700)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888887755555444444333
No 176
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.42 E-value=1e-06 Score=67.33 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
...|..+.-.|+...|+++...|+...|.....+ ..++|.+.++.|-.-+|-..+.+++.+....+
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence 4456666678999999999999998876544332 77999999999999999999999999998889
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
-.++..|.++..+.+.+.|++.|+.|+..+|+++.+..-+..|.-
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999999999999888877765
No 177
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=1e-05 Score=58.06 Aligned_cols=111 Identities=18% Similarity=0.112 Sum_probs=80.3
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh--hh--CHHHHHHHHHHHhhcCCc
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LE--DYSETSSLCTKVLELEPL 91 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~--~~~~A~~~~~~al~~~~~ 91 (159)
.-.++...++++.|.+.+...-+.+++ .+..+++..+.. .| .+.+|...|++.....+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 345667788888888887775554322 113344443333 34 699999999998888888
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
++..+..++.++..+|+|++|...+.+++..+|+++.+...+..+...+++.
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999888777766655554
No 178
>PRK10941 hypothetical protein; Provisional
Probab=98.42 E-value=7e-06 Score=58.13 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=74.5
Q ss_pred HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 55 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
..+...+..|+-.++...++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|..+++..+...|+++.+.....
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999988766555
Q ss_pred HHH
Q 031461 135 ELK 137 (159)
Q Consensus 135 ~~~ 137 (159)
.+.
T Consensus 257 ql~ 259 (269)
T PRK10941 257 QIH 259 (269)
T ss_pred HHH
Confidence 554
No 179
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.9e-06 Score=59.10 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=77.5
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+..-|..++..+.|+.|+.+|.++|.++|..+..+.+++.||.++.+|+....++.++++++|+....+..++.......
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34557778889999999999999999999999999999999999999999999999999999999999888888887776
Q ss_pred HHHHHHH
Q 031461 142 EYAKYQA 148 (159)
Q Consensus 142 ~~~~~~~ 148 (159)
.+.+.-+
T Consensus 93 ~~~eaI~ 99 (284)
T KOG4642|consen 93 GYDEAIK 99 (284)
T ss_pred cccHHHH
Confidence 6665543
No 180
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=6.1e-06 Score=60.89 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=73.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
.+--|...|..++|..|+.+-.++|+..+++.+ .+..-|.....+++.++|.-.|..|+.+.|..
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~---------------alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE---------------ALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccch---------------HHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 344566677777888888888888877666533 35666666777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
...|-.+..+|...|.+.+|...-..++..-|.+......++
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 777777777777777777776666666666666665555553
No 181
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.33 E-value=1.4e-06 Score=41.55 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.6
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
.++..+|.++..+|++++|+.++++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 358899999999999999999999999999975
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.26 E-value=5.4e-06 Score=56.36 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=70.2
Q ss_pred HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461 56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 131 (159)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 131 (159)
+-+..+++.+|..|-++|-+.-|..+|.+++.+.|.-+.++..+|..+...|+|+.|...|..++.++|.+.-+..
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~l 137 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 137 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHh
Confidence 4467789999999999999999999999999999999999999999999999999999999999999998755443
No 183
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.24 E-value=3e-05 Score=57.41 Aligned_cols=111 Identities=12% Similarity=0.150 Sum_probs=86.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh---HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD---DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.+.....|..+|+++.|..|+.-|.-++++...-..... ....++..+...+-..+..||+++++.+-|+....+.|
T Consensus 176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI 255 (569)
T PF15015_consen 176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI 255 (569)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence 455666788888999999999999999888654211111 12223334444456689999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
.++|.+..-+++.|.|+..+.+|.+|-..+--+.
T Consensus 256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977765553
No 184
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=1e-05 Score=65.23 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=96.2
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
...+|..+.+.+++..|+..|+-+++.+|.+ ..+|..+|.+|...|.+.-|+..|+++..++|.+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD---------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKD---------------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchh---------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 4447888899999999999999999998876 4559999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.-+.|..+......|.|.+|+..+...+.....-..++..++.+..+
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999998877655444455555554443
No 185
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.23 E-value=7.2e-05 Score=49.98 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=81.1
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
...+.+..++..++++.|+...+.++....+ ..+...+-.++|.+....|.+++|+..++.....+=
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w- 157 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW- 157 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-
Confidence 3567788899999999999999999875322 244556678999999999999999888765433221
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
.+...-.+|+++...|+-++|...|.+++...++..
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 233467799999999999999999999999985543
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=4.8e-05 Score=53.26 Aligned_cols=107 Identities=18% Similarity=0.281 Sum_probs=85.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
.....+|.+.++.|+.+.|-.+|..+-+....-... .....+..+.+.+|.-.++|..|...+.+++..||
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~---------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~ 283 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL---------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP 283 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc---------chhHHHHhhhhhheecccchHHHHHHHhhccccCC
Confidence 345566777777788777777777655432221111 12245677889999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
.++.+..+.|.|...+|+..+|++..+.++...|..
T Consensus 284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999999975
No 187
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.20 E-value=3.2e-06 Score=40.34 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
.+++.+|.+|..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666667777777777777777776666663
No 188
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.12 E-value=0.00043 Score=50.85 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+...+......|..-+-.|+|..|.....+.-+..+.. ...|..-+.....+|+++.|-.++.++
T Consensus 80 Krrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---------------~l~~l~aA~AA~qrgd~~~an~yL~ea 144 (400)
T COG3071 80 KRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---------------VLAYLLAAEAAQQRGDEDRANRYLAEA 144 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---------------HHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45677888888999999999999999988866553321 445778888889999999999999999
Q ss_pred hhcCC-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 86 LELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 86 l~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
-+..+ +.....+.++.+....|++..|.....+++...|.++.+......+...++...+
T Consensus 145 ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ 205 (400)
T COG3071 145 AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA 205 (400)
T ss_pred hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence 99843 3577788999999999999999999999999999999999988888877665544
No 189
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=98.12 E-value=5.8e-05 Score=47.43 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=69.1
Q ss_pred HHHHhhHHHHHhhhh---CHHHHHHHHHHHhh-cCCc-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 59 LSCYLNNAACKLKLE---DYSETSSLCTKVLE-LEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
....+++|.+..... +..+.+..++..++ -.|. .-.++|.++..++++++|+.|+.+....++.+|+|.++....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 344678888877755 56778889999887 3343 478899999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 031461 134 MELKDKQRE 142 (159)
Q Consensus 134 ~~~~~~~~~ 142 (159)
..++..+.+
T Consensus 112 ~~ied~itk 120 (149)
T KOG3364|consen 112 ETIEDKITK 120 (149)
T ss_pred HHHHHHHhh
Confidence 888776654
No 190
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=9.1e-05 Score=46.55 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=59.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
+-.-|......|+.+.|++.|.++|.+.|..+.+|.++++++.-.|+-++|+.++.+++.+....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 33456777889999999999999999999999999999999999999999999999999997654
No 191
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3.9e-05 Score=55.87 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=38.1
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
+|.++...-.|.+|+..+.+++.-+|.....-.+++.||+++.-|+-+...+.-.++..|+.+.+.....-
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 33444444455555555555555555555555555555555555555555555555555555554444443
No 192
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.00013 Score=56.79 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=91.3
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
-.=..++..|...|+..+|..++..|...+...+.+... ........+++.||+.+.+.+.|.+++++|=+
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~ 422 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE 422 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 344568888999999999999999999999987765432 22267788999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.+|.++-..+.+..+...-+.-.+|+.+.......
T Consensus 423 ~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 423 VDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999999999999999999988776554
No 193
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.05 E-value=6.9e-05 Score=54.69 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=68.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
+.....|+.+...+.++.+++.|+.|+.+.....+.. +...++..+|..+..++++++|+-+..+|..+-.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~ 193 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN 193 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence 3455578888888999999999999999876543321 1234566677777777777777777666655421
Q ss_pred c----------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 91 L----------NVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 91 ~----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
. ..-++|.++.++..+|+.-+|.++++++.++
T Consensus 194 s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 194 SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 1 1334566667777777777777777776544
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.03 E-value=6.7e-05 Score=55.65 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=82.7
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 89 (159)
.+-..|+.+.-.|+++.|+++|.+.+.+.-.-...+ ......+.+|.+|.-++++.+|+.+.++-+.+.
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe 307 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE 307 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999888754333221 124457799999999999999999999987664
Q ss_pred ----CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 90 ----PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 90 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.....+.+.+|.++..+|..++|+.+.+..+++
T Consensus 308 L~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 308 LEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345788999999999999999999988887765
No 195
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=98.03 E-value=7.8e-05 Score=53.37 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=67.8
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
-.+.|.-..+.|+.++|...|+.|+.++|+++.++..+|+.....++.-+|-.+|.+|+.++|.|.++.....+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 4455666678999999999999999999999999999999999999999999999999999999988876665543
No 196
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=8.5e-05 Score=54.17 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHH
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYR 98 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 98 (159)
.+...++|..|+.+.+-........ + ..+-..+|.|++.+|+|++|+..+..+...+..+.+.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EE-----E---------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREE-----E---------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhh-----h---------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 4567789999999887655332211 0 2346689999999999999999999999988778999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHH
Q 031461 99 RSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 99 ~~~~~~~~~~~~~A~~~~~~a 119 (159)
++.|++-+|.|.+|...-.++
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998776655
No 197
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.01 E-value=9.8e-06 Score=38.61 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=29.8
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
.++..+|.++..+|++++|..+++++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 358899999999999999999999999999853
No 198
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.01 E-value=6.2e-05 Score=59.37 Aligned_cols=123 Identities=27% Similarity=0.392 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh--hhCHHHHHHHHHH
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--LEDYSETSSLCTK 84 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~ 84 (159)
+-.+....+.|++.|+.++|..|.--|..++.+.|.+... ......+.+.|+.. +++|..++..++-
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~~~E~~l 118 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKAIPECEL 118 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhhcCchhh
Confidence 4456778899999999999999999999999998865433 24557788888766 5599999999999
Q ss_pred HhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 85 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
++...|...++++.++.+|...+.++-|++.+.-....+|.+.+......+++..+
T Consensus 119 a~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 119 ALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred hhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999977766555555444
No 199
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00042 Score=53.39 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=82.1
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC------------hHHHHHH----HHHHHHHHhhHHHHHhhhhCH
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT------------DDEKHQA----NGLRLSCYLNNAACKLKLEDY 75 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~~a~~~~~~~~~ 75 (159)
.+--.|.++|+.++|++|++.|...++-...+.+.. ..++.+. .+--...++|.|..+...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 344568999999999999999998866422210000 0000000 011234588999999999999
Q ss_pred HHHHHHHHHHhhcC-------Ccc--------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 76 SETSSLCTKVLELE-------PLN--------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 76 ~~A~~~~~~al~~~-------~~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.+|++.+..++++. -.+ ......++.++...|+..+|...|...++..|.|..
T Consensus 192 ~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 192 NQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 99999999995442 111 224556888999999999999999999999887753
No 200
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0015 Score=45.15 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=77.7
Q ss_pred HHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 14 KHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 14 ~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
.+.|..+-.. .+++.||.+|+++-+........ ..-..++...|.....+++|.+|+..|+++.+..-++
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---------ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---------SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444433 56778888888877775543221 2234567778888889999999999999998876554
Q ss_pred -------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 93 -------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 93 -------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
-..++.-|.|+....+.=.+...+++...++|.-.
T Consensus 188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc
Confidence 34566778899998999999999999999999753
No 201
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.98 E-value=0.002 Score=46.17 Aligned_cols=123 Identities=20% Similarity=0.115 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH-
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET- 78 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A- 78 (159)
++|+.....++.++.-|...+..+ +++.|+..++++.++.+..+. .........+++..++..++.++...+.++..
T Consensus 26 ~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 26 LDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 467778889999999999999999 999999999999999643111 11122234577888999999999998876544
Q ss_pred --HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 79 --SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 79 --~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
....+.+-.-.|+.+..++..-.+....++.+.+...+.+.+...+
T Consensus 105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 3344444445577777776666666668999999999998887655
No 202
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00035 Score=53.77 Aligned_cols=117 Identities=20% Similarity=0.159 Sum_probs=82.5
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC---------hHHHHH---------HHHHHHHHHhhHHHHHhhh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT---------DDEKHQ---------ANGLRLSCYLNNAACKLKL 72 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~---------~~~~~~~~~~~~a~~~~~~ 72 (159)
+.++..-+.+-..++|++|..-..+.+...|++...- .+...+ ........++..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 4566677778888999999999999998876542210 000000 0111112235778888999
Q ss_pred hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461 73 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 73 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 130 (159)
+..++|+.+++ .+++.+...+...|++++++|+|++|+..|+...+-+.++....
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 99999988887 56677777888899999999999999999998887776665443
No 203
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.96 E-value=0.00036 Score=54.00 Aligned_cols=103 Identities=21% Similarity=0.140 Sum_probs=83.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.+.-...++...|++++|+++.........+. ..++..+|.++.++|++++|...+...|..
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk---------------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDK---------------LAVLEKRAELLLKLGRKEEAEKIYRELIDR 67 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45677778888899999999999998766554432 455889999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHhcCCCc
Q 031461 89 EPLNVKALYRRSQAHLKTS-----ELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~ 126 (159)
+|++...+..+..+..... +.+.-...|.......|..
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s 110 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS 110 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccc
Confidence 9999999999888874333 4566677777776666654
No 204
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.94 E-value=2.3e-05 Score=36.92 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
+++++|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777777775
No 205
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.93 E-value=7.8e-05 Score=57.68 Aligned_cols=68 Identities=13% Similarity=-0.034 Sum_probs=59.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..+...|++++|...+++++.+.++ ...|..+|.++...|++++|...+.+|++++|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34556778888899999999999999999763 34589999999999999999999999999999
Q ss_pred ccHH
Q 031461 91 LNVK 94 (159)
Q Consensus 91 ~~~~ 94 (159)
.++.
T Consensus 485 ~~pt 488 (517)
T PRK10153 485 GENT 488 (517)
T ss_pred CCch
Confidence 9875
No 206
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00025 Score=51.13 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=72.7
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc----cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL----NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
+.-|-.-|+-|++-++|..|..+|.++|..... ++..|.+++-|.+.+|+|..|+.++.+++.++|.+..+...-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 334667899999999999999999999987643 3677889999999999999999999999999999988777777
Q ss_pred HHHHHHHH
Q 031461 135 ELKDKQRE 142 (159)
Q Consensus 135 ~~~~~~~~ 142 (159)
.|.-.++.
T Consensus 161 kc~~eLe~ 168 (390)
T KOG0551|consen 161 KCLLELER 168 (390)
T ss_pred HHHHHHHH
Confidence 77777766
No 207
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.0025 Score=44.13 Aligned_cols=107 Identities=21% Similarity=0.145 Sum_probs=77.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.+...|+.+.-.++|..|=..|.++-++.-..... .--..+|...+.||.+. ++.+|..+++++|.+
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~sk---------hDaat~YveA~~cykk~-~~~eAv~cL~~aieI 102 (288)
T KOG1586|consen 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSK---------HDAATTYVEAANCYKKV-DPEEAVNCLEKAIEI 102 (288)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc---------hhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHH
Confidence 45666666777777788888888888887764432221 11255677788887555 999999999999998
Q ss_pred CCcc------HHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCC
Q 031461 89 EPLN------VKALYRRSQAHLKT-SELEKAEADIKRALTIDPN 125 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~ 125 (159)
..+- ++.+..+|.+|..- .++++|+..|+++-.....
T Consensus 103 yt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ 146 (288)
T KOG1586|consen 103 YTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG 146 (288)
T ss_pred HHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc
Confidence 7543 45566899998665 9999999999998766443
No 208
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.90 E-value=0.00011 Score=51.06 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=64.2
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
...+++-|...+..|+|++|...|+.+....|.+ .++.+.++.+++..++++.|+....+.+.+.|+++++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 3448899999999999999999999999888754 7899999999999999999999999999999988654
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.90 E-value=4.9e-06 Score=39.89 Aligned_cols=33 Identities=30% Similarity=0.318 Sum_probs=28.8
Q ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461 32 KYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 79 (159)
Q Consensus 32 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 79 (159)
+|+++|++.|+++ .+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~---------------~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNA---------------EAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCH---------------HHHHHHHHHHHHCcCHHhhc
Confidence 4789999988874 45999999999999999986
No 210
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.89 E-value=0.00088 Score=46.07 Aligned_cols=100 Identities=15% Similarity=0.084 Sum_probs=71.7
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH-------hhcC--
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV-------LELE-- 89 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------l~~~-- 89 (159)
.+-....+++|+..|..|+-......... ...+.+++.+|.+|..+|+-+....++++| +...
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 44456789999999999888654222110 234667889999999998855555555554 4433
Q ss_pred C----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 90 P----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 90 ~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
| +.....|.+|.++.++|++++|+++|.+++..-..+
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 2 236788999999999999999999999998775443
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.89 E-value=0.00016 Score=55.36 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=79.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
+...|..+...|+.+.|+..|++++..... +. ++...++..+|.|+..+++|++|..++.+..+.+. +
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--------~~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSE--------WK---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-W 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhh--------HH---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-c
Confidence 667889999999999999999998853222 22 33456789999999999999999999999998654 4
Q ss_pred HH--HHHHHHHHHHhhCCH-------HHHHHHHHHHHhcC
Q 031461 93 VK--ALYRRSQAHLKTSEL-------EKAEADIKRALTID 123 (159)
Q Consensus 93 ~~--~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~ 123 (159)
.+ ..|..|.|+..+++. ++|...+.++-.+-
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 44 445578899999999 88888888875553
No 212
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.0006 Score=54.78 Aligned_cols=114 Identities=17% Similarity=0.071 Sum_probs=93.6
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY 97 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 97 (159)
......+++..|+....+.++..|+.+ .+...-|....++|..++|..+++..-...+++...+-
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~---------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq 81 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNAL---------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ 81 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence 345678899999999999999877643 22445677889999999999888777778888888899
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 147 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
.+-.||..++.+++|+..|+++...+|+ .+....+-.+..+.+.++++.
T Consensus 82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 777777777776666665544
No 213
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.87 E-value=0.00048 Score=55.35 Aligned_cols=63 Identities=5% Similarity=-0.062 Sum_probs=52.4
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.+|..+...+...|+++.|...+++++.++|+++..|..++.+|...|++++|.+.++.....
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 447777777888888999988888888888888888888888999999999998888776543
No 214
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.85 E-value=9.9e-05 Score=39.00 Aligned_cols=40 Identities=30% Similarity=0.494 Sum_probs=33.1
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
+++.+|..+.++|+|.+|..+++.+++++|+|..+.-...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4678899999999999999999999999999988755443
No 215
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.84 E-value=0.00045 Score=45.72 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 75 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
|+.|.+.++.....+|.++.++++-|.++..+.++ ++|+.-|+.|+.++|+...+...++.+...++...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999999999888544 56788899999999999999999999988877644
Q ss_pred HH
Q 031461 145 KY 146 (159)
Q Consensus 145 ~~ 146 (159)
..
T Consensus 87 ~d 88 (186)
T PF06552_consen 87 PD 88 (186)
T ss_dssp --
T ss_pred CC
Confidence 33
No 216
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.81 E-value=0.00082 Score=40.92 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=76.7
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH----hhhhCHHHHHHHHHHHhhcCCc
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK----LKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~A~~~~~~al~~~~~ 91 (159)
++..++.+|++-+|++..+..+...+++... + .+..+...++..+|..- .+..-.-.+++++.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~----~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS----W-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch----H-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 5778999999999999999999886654432 0 22333333444444331 2223356688899999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
.+..++.+|.-+.....|++++.-.++++.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999988763
No 217
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00088 Score=46.56 Aligned_cols=131 Identities=16% Similarity=0.100 Sum_probs=86.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh----cC-
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LE- 89 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~- 89 (159)
+++-...+.-++++|+.+|.+++.+...+... ..-...+...+..+..++.|++|-..+.+-.. .+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 33444455566777777777777776543322 33345677888999999999999888877543 22
Q ss_pred -CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 90 -PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 90 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
|+.-+++.....+|...++|..|..+++..-++..-+. ......+...++-+++.+...+++|.+
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 44455566666677778899999999998765532221 123344556677777777777777654
No 218
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.78 E-value=0.00034 Score=51.23 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=87.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+.+..+|..+-..+++++|+-+-.+|.++..+..-. +|. .-.+...++-++..+..+|....|.++|+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~---d~~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK---DWS--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC---chh--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4557778888889999999999999999987653311 111 12344557788999999999999999999998764
Q ss_pred ------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 90 ------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 90 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
+..+..+.-+|++|...|+.+.|..-|+.|....
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 4557888899999999999999999999997663
No 219
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.74 E-value=0.0012 Score=53.04 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=61.6
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
.|..+...+.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.+.+.|++...+..+..+....
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence 4666777777888888887777653 2333 4555777777888888888888888888888888877777777777666
Q ss_pred HHHHHH
Q 031461 141 REYAKY 146 (159)
Q Consensus 141 ~~~~~~ 146 (159)
++.++.
T Consensus 542 G~~~~A 547 (697)
T PLN03081 542 GRQAEA 547 (697)
T ss_pred CCHHHH
Confidence 665444
No 220
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.74 E-value=6.5e-05 Score=36.39 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
+.++|.+|...|+|++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 221
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.74 E-value=0.0048 Score=41.04 Aligned_cols=58 Identities=29% Similarity=0.388 Sum_probs=26.3
Q ss_pred HHhhhhCHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 68 CKLKLEDYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
++...|+++.|...+.+++...| .....+...+..+...++++.|+..+.+++...|.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 44444444444444444444333 23333334444444444444444444444444444
No 222
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00025 Score=53.67 Aligned_cols=123 Identities=18% Similarity=0.038 Sum_probs=89.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh-c-
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE-L- 88 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~- 88 (159)
..+.-+++..|-.|+|..|.+.....=-........++ +-.....++|+|.+++.++.|.-+..+|.+|++ .
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~------q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c 314 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITP------QLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC 314 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccc------hhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence 34555677778888888888776421110000001110 011233468999999999999999999999996 1
Q ss_pred -------CC---------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 89 -------EP---------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 89 -------~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.| .....+|+.|..|.+.|+--.|.++|.++......||..|..++.|=..
T Consensus 315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 11 2467799999999999999999999999999999999999988886533
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.00016 Score=51.72 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=75.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+......|...|+.|+|+.|+..|+.++......|- +-+++|.|++..|+++.|+.+..++|...
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------------lAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------------LAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------------hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 556778899999999999999999999998666543 36799999999999999999988887542
Q ss_pred ----Cc----------------c---------HHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 90 ----PL----------------N---------VKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 90 ----~~----------------~---------~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
|. + ..++...+-++++.++++.|...+.
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 21 1 4456667888999999999987654
No 224
>PLN03077 Protein ECB2; Provisional
Probab=97.67 E-value=0.0028 Score=52.26 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=71.6
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHh--cccCCCC------------hHHHHHHHH--------HHHHHHhhHHHHH
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKII--EFHHSFT------------DDEKHQANG--------LRLSCYLNNAACK 69 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~------------~~~~~~~~~--------~~~~~~~~~a~~~ 69 (159)
.+......+...|+.++|+..|.+..+.. |+...+. ++-...... .....|..+..++
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 35556667777888888888887766531 1111000 000000000 0122455666666
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
.+.|++++|...+++. .+.|+ +..|..+-.++...++.+.+....+++++++|++......+..+....++.++
T Consensus 636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~ 709 (857)
T PLN03077 636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709 (857)
T ss_pred HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence 6666666666666553 23442 33344444455556666666666666777777777777777777665555433
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.67 E-value=0.0062 Score=40.48 Aligned_cols=107 Identities=28% Similarity=0.282 Sum_probs=81.8
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-cHHHHH
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-NVKALY 97 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~ 97 (159)
.++..|+++.|+..|.+++...+.... ....+...+..+...++++.|+..+.+++...+. ....+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 677888888888888888664331001 1333555566677889999999999999999998 799999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
.++.++...+++..|...+..++...|...........+.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLL 246 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHH
Confidence 9999999999999999999999999998444444444333
No 226
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.66 E-value=0.00013 Score=33.37 Aligned_cols=31 Identities=39% Similarity=0.557 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
+++.+|.++...+++++|+.+|.+++.+.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455555555555555555555555555553
No 227
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00061 Score=48.81 Aligned_cols=85 Identities=13% Similarity=0.055 Sum_probs=71.3
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
.+..+|.+||.+..--.+..|.+ ...+..+|.||....+|..|-.++++.-.+.|.....-+.-+
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~---------------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRS---------------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 56778888888876555554432 344889999999999999999999999999999999999999
Q ss_pred HHHHhhCCHHHHHHHHHHHH
Q 031461 101 QAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~al 120 (159)
+.++..+.+.+|+.......
T Consensus 86 QSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHhcccHHHHHHHHHhc
Confidence 99999999999987766554
No 228
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.65 E-value=0.00061 Score=50.11 Aligned_cols=97 Identities=22% Similarity=0.071 Sum_probs=51.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+.....+..+...|.+++|......+++..-+. .+...+ -....+++..=++..++.++..
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~----------------~L~~~~--~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP----------------RLCRLI--PRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh----------------hHHHHH--hhcCCCCchHHHHHHHHHHHhC
Confidence 3444556677788899999999999988863321 000000 0123344444444444444444
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
|+++..+..+|..++..+.|.+|...|+.+++.-|
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 44444444444444444444444444444444444
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.64 E-value=8.4e-05 Score=35.97 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+.++|.+|..+|+|++|+.++++++.+.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7899999999999999999999966543
No 230
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.63 E-value=8.7e-05 Score=34.85 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=29.6
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
+++++|.++..+|++++|...+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 47899999999999999999999999999974
No 231
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.001 Score=46.34 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=67.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc--------CCcc----------HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL--------EPLN----------VKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
.+++...|+-+++.|+|.+|...|..||.. .|.. ...+.+.++|+...|+|-+++..+..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345778899999999999999999998732 2332 4468899999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHH
Q 031461 121 TIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 121 ~~~p~~~~~~~~~~~~~~~ 139 (159)
..+|.|..+....++.+..
T Consensus 258 ~~~~~nvKA~frRakAhaa 276 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAA 276 (329)
T ss_pred hcCCchHHHHHHHHHHHHh
Confidence 9999998888877776644
No 232
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.61 E-value=0.00014 Score=49.99 Aligned_cols=60 Identities=23% Similarity=0.342 Sum_probs=55.8
Q ss_pred HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
...+.++.+.|.+.+++++.+-|.|...|+++|....+.|+++.|.+.|++.++++|.+-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678899999999999999999999999999999999999999999999999999873
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.0089 Score=42.71 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=89.5
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH-----
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV----- 85 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----- 85 (159)
+.....|......|++.+|...|..++...+.+... ...++.|+...|+++.|...+...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 345566778899999999999999999998876433 678888999988887777666541
Q ss_pred -----------------------------hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CcHHHHHHHH
Q 031461 86 -----------------------------LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNRVVKLVYM 134 (159)
Q Consensus 86 -----------------------------l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~ 134 (159)
+..+|++..+-+.+|..+...|+.+.|...+-..+..+- .|..+++.+-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 123688999999999999999999999988887776654 3456666666
Q ss_pred HHHHHHH
Q 031461 135 ELKDKQR 141 (159)
Q Consensus 135 ~~~~~~~ 141 (159)
.+...++
T Consensus 280 e~f~~~g 286 (304)
T COG3118 280 ELFEAFG 286 (304)
T ss_pred HHHHhcC
Confidence 6665554
No 234
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.59 E-value=0.0041 Score=44.62 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=80.5
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhhcCCccHHH
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
.+-..+.+..+.|-..|.+|....... ..+|...|..-.. .++...|...|+.+++..|.+...
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~ 72 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 344445566888889999987421111 3447778888555 677777999999999999999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHHH
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMELKDKQR 141 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~ 141 (159)
|......+...|+.+.|...|++++..-|... .++......+...+
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999887765 35554444444443
No 235
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.59 E-value=8.3e-05 Score=55.78 Aligned_cols=84 Identities=25% Similarity=0.242 Sum_probs=71.0
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+-+-+.-.++-+.|+.|+..+.+||.++|+++..+-+++.++...++|..|+.++.++++++|....+....+..-..+.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 44667777889999999999999999999999999999999999999999999999999999987666555555555555
Q ss_pred HHHH
Q 031461 142 EYAK 145 (159)
Q Consensus 142 ~~~~ 145 (159)
+..+
T Consensus 87 ~~~~ 90 (476)
T KOG0376|consen 87 EFKK 90 (476)
T ss_pred HHHH
Confidence 5443
No 236
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0078 Score=42.44 Aligned_cols=66 Identities=18% Similarity=0.258 Sum_probs=31.7
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHH-HHHHHhcCCCcH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEAD-IKRALTIDPNNR 127 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~ 127 (159)
.+..|.|++.+++|++|...++.++..++.++.++.++-.+-..+|.-.++... +.+....+|+++
T Consensus 210 lnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 210 LNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 444455555555555555555555555555555555555555555544333322 233333344443
No 237
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.57 E-value=0.012 Score=49.68 Aligned_cols=93 Identities=9% Similarity=-0.019 Sum_probs=43.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh----cCC
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LEP 90 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~ 90 (159)
.....+.+.|++++|+..|.......- .|. ..+|..+...+.+.|++++|...+.+... +.|
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv-~PD-------------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P 577 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNV-KPD-------------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCC-CCC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence 334455666777777777665543210 010 22344444444445555555555544432 122
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+...+..+..+|.+.|++++|...|+.....
T Consensus 578 -D~vTynaLI~ay~k~G~ldeA~elf~~M~e~ 608 (1060)
T PLN03218 578 -DHITVGALMKACANAGQVDRAKEVYQMIHEY 608 (1060)
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2233344444444455555555544444433
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.57 E-value=0.0032 Score=52.03 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=68.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC--
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-- 90 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-- 90 (159)
....|..+...|+++.|...+.+++......... .....++.++|.++...|+++.|...+.+++.+..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 564 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ 564 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4456666777778888887777777764432211 11233466778888888888888888888876521
Q ss_pred ------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 91 ------LNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.....+..+|.++...|++++|...+.+++.+
T Consensus 565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 11233556788888888888888888887765
No 239
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.55 E-value=0.012 Score=49.64 Aligned_cols=96 Identities=5% Similarity=-0.148 Sum_probs=47.8
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-C
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-P 90 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~ 90 (159)
+...-..+.+.|++++|...|....... +-.|+ ..+|..+-.+|.+.|++++|...++...+.+ +
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-------------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-------------HITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 3344455566677777777776654421 11111 2234444455555555555555555555443 2
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
.++..|..+...|.+.|++++|...|.....
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3344444455555555555555555554443
No 240
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.54 E-value=0.0023 Score=42.70 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=80.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
-..+.++|..+.+.|+.+.|++.|.++.+...... ....+++++-.+.+..++|..+..+..++-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~------------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG------------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999887654432 236668888899999999999999999986653
Q ss_pred C--cc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 90 P--LN----VKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 90 ~--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
. .+ .+.-...|..+...++|..|-..|-.+..-..
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 2 22 33455678888889999999988887765443
No 241
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0044 Score=47.23 Aligned_cols=81 Identities=19% Similarity=0.218 Sum_probs=69.1
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE-LEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
.+|.+......+.+.+.+--..|.+++...|+++..|..-|.-.+.-+. .+.|...|.++++.+|+++..+...-++.-
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMEL 185 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence 4467666667777779999999999999999999999999997777665 999999999999999999998888777664
Q ss_pred HH
Q 031461 139 KQ 140 (159)
Q Consensus 139 ~~ 140 (159)
..
T Consensus 186 ~~ 187 (568)
T KOG2396|consen 186 MY 187 (568)
T ss_pred HH
Confidence 43
No 242
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=97.50 E-value=0.001 Score=37.87 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=57.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+....+.|..+|.+.+..+|+..+.+++...++.+ .+..++..+..+|...|+|.+.+.+.-.-+.+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778899999999999999999999999876642 24677888999999999999999988776654
No 243
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.48 E-value=0.00027 Score=32.17 Aligned_cols=31 Identities=39% Similarity=0.508 Sum_probs=28.8
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
++.++|.++..+++++.|..++++++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4789999999999999999999999999885
No 244
>PLN03077 Protein ECB2; Provisional
Probab=97.48 E-value=0.0073 Score=49.85 Aligned_cols=91 Identities=14% Similarity=0.012 Sum_probs=67.4
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
......+.+.|++++|...+++. +-.|+ ..+|..+-..+...++.+.+....+++++++|+++
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-------------~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM----PITPD-------------PAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC----CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc
Confidence 33445555666666666665542 11111 33455555566778999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..+..++.+|...|+|++|.+..+....
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 9999999999999999999988877643
No 245
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.0064 Score=42.86 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=91.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHHh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVL 86 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al 86 (159)
+...-.-.++.+..+.+.|....++...++.... +..+|..+.+ .+++.+|.-+|++.-
T Consensus 138 E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t-----------------LtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 138 EAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT-----------------LTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH-----------------HHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 3344445677888899999999999888866521 4445555554 347999999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
...|..+..+...+.|+..+|+|++|...++.++.-+++++.....+-.+--..++-
T Consensus 201 ~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 201 EKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 877778889999999999999999999999999999999988877766655444443
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.018 Score=40.33 Aligned_cols=126 Identities=18% Similarity=0.130 Sum_probs=86.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 89 (159)
.+...++.+...++|+.|..++.++++....+...= .-...|-..+.....+..+.++..+++++..+.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555567899999999999997765543320 014457778888888999999999999998764
Q ss_pred ---CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHH---HHHHHHHHHHHHHHHHH
Q 031461 90 ---PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVV---KLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~---~~~~~~~~~~~~~~~~~ 146 (159)
|+.+..-+..+-=....-+-++|++.|++++.+...+ ..+ .....++..+++++.+.
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 6666666777777788889999999999998775433 222 23333444555555443
No 247
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0019 Score=45.51 Aligned_cols=81 Identities=14% Similarity=0.160 Sum_probs=69.9
Q ss_pred HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
.+...+..++=..+..-++++.|..+.++.+.++|.++.-+.-+|-+|.++|.+.-|+.+++..+..-|+++.+......
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 34455566777788889999999999999999999999999999999999999999999999999999998776544444
Q ss_pred H
Q 031461 136 L 136 (159)
Q Consensus 136 ~ 136 (159)
+
T Consensus 258 l 258 (269)
T COG2912 258 L 258 (269)
T ss_pred H
Confidence 3
No 248
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.40 E-value=0.0046 Score=51.13 Aligned_cols=103 Identities=11% Similarity=0.051 Sum_probs=80.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+......|..++..|+++.|...+..++...+.... .....+...+|.++...|++++|...+.+++...
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~ 521 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWY----------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMA 521 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334445678889999999999999999986433211 1123456788999999999999999999998653
Q ss_pred Cc------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 90 PL------NVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 90 ~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.. ...++..+|.++...|+++.|...+.+++.+
T Consensus 522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 21 1456778899999999999999999998876
No 249
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.39 E-value=0.005 Score=36.36 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~ 145 (159)
+..++..+..+|++..+.+.+|..+...|++++|+..+-.++..+|+. ..++..+-.+...++....
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 456788899999999999999999999999999999999999998765 6787888888777766443
No 250
>PRK10941 hypothetical protein; Provisional
Probab=97.38 E-value=0.0031 Score=44.89 Aligned_cols=80 Identities=13% Similarity=-0.084 Sum_probs=68.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
....+...=..+.+.++++.|+.+.+..+.+.|.++.. +..+|.+|..+|.+..|..+++.-+..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44556666778889999999999999999999887643 778999999999999999999999999
Q ss_pred CCccHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAH 103 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~ 103 (159)
.|+.+.+..-+.++.
T Consensus 245 ~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 245 CPEDPISEMIRAQIH 259 (269)
T ss_pred CCCchhHHHHHHHHH
Confidence 999988876665543
No 251
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.37 E-value=0.0007 Score=48.67 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
++.+......+....+.|+-+.|..+|.-|+.+.|..+.. +...|......++.-+|-.+|-+|+
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhheee
Confidence 3445555556667789999999999999999998887543 7888998888899999999999999
Q ss_pred hcCCccHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQA 102 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~ 102 (159)
.++|.+.+++.+++..
T Consensus 178 tisP~nseALvnR~RT 193 (472)
T KOG3824|consen 178 TISPGNSEALVNRART 193 (472)
T ss_pred eeCCCchHHHhhhhcc
Confidence 9999999999887654
No 252
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.37 E-value=0.003 Score=49.15 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=81.5
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
.-+|+..+|+.++..++-..+.... ..+++.+|.+...+|...+|--.+..|+...|.-..-++.+|
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~ 290 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLG 290 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHH
Confidence 4569999999999999998765332 345889999999999999999999889988887777799999
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 101 QAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
.++..+++|...+.+|..+.+..|.-
T Consensus 291 ~i~aml~~~N~S~~~ydha~k~~p~f 316 (886)
T KOG4507|consen 291 NIYAMLGEYNHSVLCYDHALQARPGF 316 (886)
T ss_pred HHHHHHhhhhhhhhhhhhhhccCcch
Confidence 99999999999999999999998864
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.32 E-value=0.015 Score=37.31 Aligned_cols=90 Identities=24% Similarity=0.273 Sum_probs=64.5
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCC----------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEP----------------------LNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..|......++...+...+.+++.+.. ....++..++..+...|++++|+..+.+++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 334445566778888888888876641 1244566688889999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 122 IDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 122 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.+|.+..++..+..+....+......+ .|.++
T Consensus 91 ~dP~~E~~~~~lm~~~~~~g~~~~A~~-~Y~~~ 122 (146)
T PF03704_consen 91 LDPYDEEAYRLLMRALAAQGRRAEALR-VYERY 122 (146)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHH-HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcCHHHHHH-HHHHH
Confidence 999999999999999988877755533 44443
No 254
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.28 E-value=0.014 Score=41.93 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=78.6
Q ss_pred HHHhhhHHHH-cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 13 KKHDGNLLFR-AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 13 ~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
+...|..-+. .++.+.|...|+.+++..+.++. ++..........++.+.|...|++++..-|.
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------------~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------------FWLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------------HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 4455666566 57777799999999999887643 3666677888999999999999999987665
Q ss_pred cH---HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461 92 NV---KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 131 (159)
Q Consensus 92 ~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 131 (159)
.. ..|-.....=...|+.+......+++....|.+..+..
T Consensus 103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 54 46666777778889999999999999999888655444
No 255
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.026 Score=43.16 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=47.1
Q ss_pred HHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 67 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
..-..+++++.+...+++-|...|.+..+|...|..-..+|+.+.|...|.-|++.-.-+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 334567788888888888888888888888888888888888888888888877665444
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.017 Score=40.96 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=89.2
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh----hc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL----EL 88 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~ 88 (159)
.....+.+.-.|.|.-.++.+.++++.+|. . ...+...+|.+.+.-|+.+.|..+++.+- .+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e---~-----------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL 245 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPE---Q-----------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL 245 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCc---c-----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Confidence 334456666778899999999999986432 1 13457789999999999999999999543 33
Q ss_pred C--CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 89 E--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 89 ~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
+ ..+.-...+.+.+|...++|.+|...|.+++..+|.++.+....+-|..=+++-
T Consensus 246 ~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l 302 (366)
T KOG2796|consen 246 DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL 302 (366)
T ss_pred hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence 3 334667788889999999999999999999999999987776666665444443
No 257
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=97.21 E-value=0.0063 Score=37.75 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=78.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH----hh
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV----LE 87 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----l~ 87 (159)
.+.-.|+.+++.+++-.+|-.|.+|+.+.......+..+..++.-+......|+|..+..+|+.+-.+.|++-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999997765444444455555556666789999999999999999988754 55
Q ss_pred cCCccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
+-|..+..- ..+ --.+|--..|+-. .++..|+ |.+...+..
T Consensus 83 LiPQCp~~~---C~afi~sLGCCk~ALl~---F~KRHPN-P~iA~~vq~ 124 (140)
T PF10952_consen 83 LIPQCPNTE---CEAFIDSLGCCKKALLD---FMKRHPN-PEIARLVQH 124 (140)
T ss_pred hccCCCCcc---hHHHHHhhhccHHHHHH---HHHhCCC-HHHHHHHHh
Confidence 666654321 112 1234444455433 3566774 555444433
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.02 Score=41.89 Aligned_cols=121 Identities=10% Similarity=0.009 Sum_probs=78.6
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-CCcc--
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN-- 92 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~-- 92 (159)
.+-..+-.|++.+|...+.+.++-.|.+- .++...-.+++-+|....-...+++++.. +|+-
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl---------------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~ 173 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL---------------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC 173 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh---------------hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH
Confidence 34456777888888888888888766642 22333344555677777777777777765 4433
Q ss_pred -HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 93 -VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIF 151 (159)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (159)
....-..+..+...|-|++|.+.-.++++++|.|.=+.....-+...-.+.++....++
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 33333455667777888888888888888888776666666666666666655554444
No 259
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.037 Score=37.30 Aligned_cols=96 Identities=15% Similarity=0.047 Sum_probs=77.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+..+++..|..+++-.|....++..+..|.-... ...+..|.++.-+|.+.+|...|+.++...|
T Consensus 125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 456778888899999999999999988886532211 1157788999999999999999999999998
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
.+.+-++.+..+.++|+.++|...+..+.
T Consensus 192 -g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 192 -GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 56667888999999999999877766554
No 260
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.00071 Score=51.36 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=71.0
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHH-Hhcc--cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAK-IIEF--HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
...|.++|+.|.|..++.+|.+|+. .+.. ..-......+..+.-...+++|.|..++..|++-.|.++|.++.....
T Consensus 287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 5678999999999999999999996 2211 110000112222223355689999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhh
Q 031461 91 LNVKALYRRSQAHLKT 106 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~ 106 (159)
.+|..|+++++|....
T Consensus 367 ~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 367 RNPRLWLRLAECCIMA 382 (696)
T ss_pred cCcHHHHHHHHHHHHH
Confidence 9999999999987643
No 261
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=97.07 E-value=0.0073 Score=35.89 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=47.3
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+.|+|..|++.+.+.++.......... ......+..++|.++...|++++|+..+++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456889999999999999988654332210 11223456778888888888888888888888764
No 262
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.04 E-value=0.024 Score=48.35 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=85.3
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc--cHH
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--NVK 94 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~ 94 (159)
...|-..+.+++|.++|+.-++-.... ..+|...|...+...+-+.|...+.+|+..-|. +..
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 334444555566666666555544321 455888888888888889999999999998887 788
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
..-..|+.-++.|+-+.+...|+-.+.-+|.-...|..+.......+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence 8888899999999999999999999999998888888887776655443
No 263
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.01 E-value=0.052 Score=39.78 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=81.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHH-HhcccCCCC------------------hHHHHHHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAK-IIEFHHSFT------------------DDEKHQANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~a~~~~ 70 (159)
.....+.+...+..|+..+|+......+. ......... .............++..+|....
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888887777 222110000 01123344566677888888888
Q ss_pred hh------hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH-----------------HHHHHHHHHHHhcCCC
Q 031461 71 KL------EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL-----------------EKAEADIKRALTIDPN 125 (159)
Q Consensus 71 ~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~-----------------~~A~~~~~~al~~~p~ 125 (159)
.. +.++++...|..++.++|.+.++++..|..+...-+. ..|+..|-+++...|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 87 8999999999999999999999999988877655322 2277778888877776
No 264
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.061 Score=41.24 Aligned_cols=103 Identities=13% Similarity=0.189 Sum_probs=83.7
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
-.++++..|-..|.+||+.+..+ .+++...+.+-++.++.-.|...+++|+.+-|.-...||...
T Consensus 84 esq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 45677778888888888875444 556889999999999999999999999999999999999998
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 101 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
..-..+|+..-|.+.|++=+...|+. .++...-+...+
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElR 186 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELR 186 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHH
Confidence 88899999999999999999999964 444444444433
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.95 E-value=0.031 Score=43.10 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=57.1
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.+...|..+...|+.++|+..+++++...+.. .-+++.+|-++..+++|++|..+|.+....+.-.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka 340 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA 340 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence 36788999999999999999999998654433 456888999999999999999999999987654433
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.94 E-value=0.082 Score=37.91 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=79.4
Q ss_pred HHHcccHHHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhc----CC---
Q 031461 20 LFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLEL----EP--- 90 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~~--- 90 (159)
+.++|+++.|..+|.++-...+ .+|.. -.....++++.|......+ +++.|..+++++..+ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~--------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM--------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH--------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 4678999999999999988863 22221 1334667899999999999 999999999999877 21
Q ss_pred c-------cHHHHHHHHHHHHhhCCHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 91 L-------NVKALYRRSQAHLKTSELEK---AEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 91 ~-------~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
. ....+..++.+|...+.++. |....+.+..-.|+.+.+....-++...
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~ 133 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK 133 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 1 14567778888988887665 4444444555578777776444444333
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.92 E-value=0.037 Score=36.16 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=63.0
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+..+..+-...++.+++...+.-.-.+.|..+..-..-|.++...|+|.+|+..|+.+....|..+-+...+.-|...++
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 44555556667788888888877777888888888888888888888888888888888888888877777777775554
Q ss_pred HH
Q 031461 142 EY 143 (159)
Q Consensus 142 ~~ 143 (159)
..
T Consensus 93 D~ 94 (160)
T PF09613_consen 93 DP 94 (160)
T ss_pred Ch
Confidence 33
No 268
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.89 E-value=0.00031 Score=50.83 Aligned_cols=78 Identities=19% Similarity=0.172 Sum_probs=67.6
Q ss_pred HHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 66 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 66 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
+.-.+..|.++.|+..|..+|.++|.....+-.++.++..++....|+.+|..++.++|+...-....+..+..++.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 333456889999999999999999999999999999999999999999999999999999877666666666665544
No 269
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.87 E-value=0.054 Score=38.79 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=77.2
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHH-----HHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEK-----HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
|......+++..+...+.. .+..++....+| ....+....++..++..+...+.++.+...+++.+..+|-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~----g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~ 185 (280)
T COG3629 110 GLKARAGLRFEQAGELLSE----GPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPY 185 (280)
T ss_pred ccchhhhHHHHHHHHHhhc----CCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc
Confidence 3333444455555555543 122222222333 3356777888999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+-..|..+-.+|...|+...|+..|++.-..
T Consensus 186 ~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 186 DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred chHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 9999999999999999999999999887653
No 270
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.87 E-value=0.0025 Score=31.37 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=20.6
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.++|.++..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34677777777777777777777777654
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.84 E-value=0.063 Score=35.11 Aligned_cols=114 Identities=9% Similarity=-0.065 Sum_probs=85.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+.+...+....++.+++-..+.-.-.+.|..+.. -..-|..++..|+|.+|+..++.+..-
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45667788888889999999998887777776765443 567788899999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.|..+.+--.++.|++.+++.+ ...+-...--.+.++.+......+..+
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDPS--WRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred CCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 9999998899999999999873 333332222233366666666655443
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.79 E-value=0.029 Score=43.03 Aligned_cols=106 Identities=18% Similarity=0.191 Sum_probs=59.2
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-CCcc
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-EPLN 92 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~ 92 (159)
+..|..+.+.|+.++||+.|...++..|.... ..+..++..+++.++.|.++...+.+==.+ -|.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 44566667777777777777777766543211 345667777777777777776665553222 1344
Q ss_pred HHHHHHHHHHHHh-hCC---------------HHHHHHHHHHHHhcCCCcHHHHHH
Q 031461 93 VKALYRRSQAHLK-TSE---------------LEKAEADIKRALTIDPNNRVVKLV 132 (159)
Q Consensus 93 ~~~~~~~~~~~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~~~ 132 (159)
+...|..+.+..+ .++ -..|++.+.+|++.+|.-+.....
T Consensus 330 Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 330 ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhc
Confidence 4444444433222 111 123566677777777766544433
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.77 E-value=0.15 Score=38.88 Aligned_cols=77 Identities=8% Similarity=0.055 Sum_probs=60.6
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-DPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~ 142 (159)
=|...+..|+|.++..+..=..+++| ++.++.-+|.|+....+|++|..++...--- .-.|..+++.+.-|++.+.+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~lCqKh~~k 545 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALALCQKHLPK 545 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhhhh
Confidence 35556789999999999999999999 9999999999999999999999888754221 11235677777777766544
No 274
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.73 E-value=0.04 Score=44.89 Aligned_cols=97 Identities=19% Similarity=0.056 Sum_probs=74.1
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
.|...++.|++++|..+.+ ++...+.+ + ..++..+-.||..++++++|..+|+++++.+|. -.-
T Consensus 49 kaLsl~r~gk~~ea~~~Le-~~~~~~~~---D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLLE-ALYGLKGT---D-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHHHhcCchhHHHHHh-hhccCCCC---c-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 4778899999999995554 33322211 1 234677889999999999999999999999998 888
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
++.+-.+|.+-++|.+-.+.--+..+..|.++-
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 888999999999998865555555556777753
No 275
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.71 E-value=0.029 Score=46.59 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=85.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-------hhCHHHHHHHHHHH
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYSETSSLCTKV 85 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~a 85 (159)
+....+.+...+.|+.|+..|++.-.-.|.-..- ..+.+.+|.+.+. ...+++|+.-|++.
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (932)
T PRK13184 478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL 545 (932)
T ss_pred cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 4455677788899999999999988877754332 1223444444333 23577777776553
Q ss_pred hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
.-.|.-|--|+..|.+|..+|+|++-+++|.-|++..|.+|.+......+-.++.+
T Consensus 546 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 546 -HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred -cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 33455666788899999999999999999999999999999888777776655543
No 276
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=96.68 E-value=0.075 Score=40.26 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=73.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--C-----HHHHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--D-----YSETSSLC 82 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~-----~~~A~~~~ 82 (159)
.......|-.++..|++.+|+..|+.+|...+-....+..+..+..++...+...+--+.+.+. . .++..+.+
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l 283 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL 283 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 3445668999999999999999999999998766555556666666666655432222222221 1 22222222
Q ss_pred HHH-----hhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 83 TKV-----LELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 83 ~~a-----l~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
+-+ .++.|.+..--++.|. ..++.++|.-|-.+.++.|.+.|....+
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a 336 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVA 336 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence 222 2445666555566665 4588999999999999999999987543
No 277
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.65 E-value=0.03 Score=35.52 Aligned_cols=74 Identities=24% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 12 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 12 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..+..+..+.... +..+.|.++...++- ..|.- ...+.+.+|..+.++++|+.++.+++..+..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~-----------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPER-----------RRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCccc-----------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3455566665543 467788888877761 12211 2455778999999999999999999999999
Q ss_pred CCccHHHHHH
Q 031461 89 EPLNVKALYR 98 (159)
Q Consensus 89 ~~~~~~~~~~ 98 (159)
+|+|..+.-.
T Consensus 101 e~~n~Qa~~L 110 (149)
T KOG3364|consen 101 EPNNRQALEL 110 (149)
T ss_pred CCCcHHHHHH
Confidence 9999887543
No 278
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.65 E-value=0.035 Score=38.26 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhHHHHcccHHH-------HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461 8 EACERKKHDGNLLFRAGKYWR-------ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 80 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~-------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 80 (159)
..+..+...|+.+-..|+.+. |+..|.+++..... |....+ ...+.+.+|..+.++|++++|..
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~-~~~~~~--------~~~l~YLigeL~rrlg~~~eA~~ 186 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF-PIEGMD--------EATLLYLIGELNRRLGNYDEAKR 186 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC-CCCCch--------HHHHHHHHHHHHHHhCCHHHHHH
Confidence 456667777777777777544 45555555443222 111111 14467899999999999999999
Q ss_pred HHHHHhhcCCccH-HHHHHHHH
Q 031461 81 LCTKVLELEPLNV-KALYRRSQ 101 (159)
Q Consensus 81 ~~~~al~~~~~~~-~~~~~~~~ 101 (159)
++.+++.....+. ..+..+|.
T Consensus 187 ~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 187 WFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHcCCCCCCcHHHHHHHH
Confidence 9999998764443 44555543
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.021 Score=41.86 Aligned_cols=90 Identities=9% Similarity=-0.017 Sum_probs=66.5
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY 97 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 97 (159)
..+|..|+...-...+.+++-.-..+. +...-+..-.+.+....|-|++|.+..+++++++|.+..+..
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dl-----------p~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~H 213 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADL-----------PCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASH 213 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCC-----------cHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHH
Confidence 345666777777777776665421111 112333445678888999999999999999999999999988
Q ss_pred HHHHHHHhhCCHHHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKR 118 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~ 118 (159)
..+-++...|++.+++++.++
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHh
Confidence 888888888888888776654
No 280
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.49 E-value=0.21 Score=36.63 Aligned_cols=126 Identities=17% Similarity=0.089 Sum_probs=95.1
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+......+..+.+.|.++.|...+.++....+..... ...+....+......|+..+|+..++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346678888999999999999999999988865332211 133466778888889999999998888876
Q ss_pred cC----------------------------------CccHHHHHHHHHHHHhh------CCHHHHHHHHHHHHhcCCCcH
Q 031461 88 LE----------------------------------PLNVKALYRRSQAHLKT------SELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 88 ~~----------------------------------~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~ 127 (159)
.. ...+++++.+|.-.... +..+++...|..+..+.|+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 10 01255677777777777 889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031461 128 VVKLVYMELKDKQREYA 144 (159)
Q Consensus 128 ~~~~~~~~~~~~~~~~~ 144 (159)
.++...+.....+-...
T Consensus 293 k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 293 KAWHSWALFNDKLLESD 309 (352)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888887776654433
No 281
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.45 E-value=0.0054 Score=42.37 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=52.8
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
...+.++.+.|.+.|.+++.+.|.+ ...|..+|....+.|+++.|...+++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4567899999999999999998875 3449999999999999999999999999999876
No 282
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.44 E-value=0.0091 Score=29.24 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+.++.++|.+|...|++++|...+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999765
No 283
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.36 E-value=0.0089 Score=29.19 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.++..+|++....++|++|+..|.+++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778888888888999999888888765
No 284
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.34 E-value=0.095 Score=31.07 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=44.7
Q ss_pred HhhhhCHHHHHHHHHHHhhcC----C-----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 69 KLKLEDYSETSSLCTKVLELE----P-----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~----~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
....|+|..|+..+.+..... . ....+++++|.++...|++++|+..+++++.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 357889999977777766432 2 1357889999999999999999999999988854
No 285
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.23 E-value=0.023 Score=27.37 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHH--HHHHHhcCCCc
Q 031461 94 KALYRRSQAHLKTSELEKAEAD--IKRALTIDPNN 126 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~--~~~al~~~p~~ 126 (159)
+.++..|-.++..|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566777777888888888877 33666666653
No 286
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.23 E-value=0.29 Score=42.31 Aligned_cols=78 Identities=22% Similarity=0.133 Sum_probs=66.3
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELK 137 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~ 137 (159)
.+|..+.-+|.+.+.+++|.+.++..++..-+....|...|..+...++-+.|...+.+|+..-|. +..+....+.+.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 457788889999999999999999999887788999999999999999999999999999999998 344444444433
No 287
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.057 Score=42.72 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=63.8
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
.++-|-|.-++++.+|..++++|...++.-|.+ ++....++.||..+.+.|.|++.++.|-+.+|.++-.+...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 344567788899999999999999999876654 77888899999999999999999999999999887655544
Q ss_pred HH
Q 031461 134 ME 135 (159)
Q Consensus 134 ~~ 135 (159)
-.
T Consensus 435 ~~ 436 (872)
T KOG4814|consen 435 LQ 436 (872)
T ss_pred HH
Confidence 43
No 288
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=96.11 E-value=0.17 Score=36.50 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcc------cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461 28 RASKKYEKAAKIIEF------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 101 (159)
Q Consensus 28 ~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (159)
..++.+.+.+..... +.++-++...-+..+...++.-.+..|...|.+.+|.+.+++++.++|-+...+..+-.
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~ 321 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMA 321 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHH
Confidence 445555555555422 22233345556777788888888999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHHH
Q 031461 102 AHLKTSELEKAEADIKRA 119 (159)
Q Consensus 102 ~~~~~~~~~~A~~~~~~a 119 (159)
++...|+--++++.|++.
T Consensus 322 ~la~~gD~is~~khyery 339 (361)
T COG3947 322 SLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHhccchhhhhHHHHH
Confidence 999999988888777665
No 289
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.07 E-value=0.013 Score=42.35 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=66.5
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
..|...+....+.|.|.+--..|.++++..|.+.+.|..-+. =+...++++.+...|.++++++|++|.++...-+++
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHH
Confidence 346677777788889999999999999999999998887443 478889999999999999999999999887766654
No 290
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.48 Score=36.62 Aligned_cols=100 Identities=22% Similarity=0.251 Sum_probs=76.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+.-.|..+..-+.|+.|-..|..|++.... .++...+-.|+|..|...++-+.-.+..+. +
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i 430 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAEDLYKALDL---I 430 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHHHHHHHHh---c
Confidence 3566777888889999999999999999987433 255677788999999998776554333332 3
Q ss_pred CCcc----------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 89 EPLN----------VKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 89 ~~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
.|.+ ..++|-.|...+..+++.+|...+.+.++..
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 3332 5567888999999999999999999999886
No 291
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.98 E-value=0.44 Score=36.84 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHHHHHhcccCCCChHHH----------HHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc--c
Q 031461 25 KYWRASKKYEKAAKIIEFHHSFTDDEK----------HQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--N 92 (159)
Q Consensus 25 ~~~~A~~~~~~al~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~ 92 (159)
-..+|..+|+++++.....-..+.... ........-+-..+|.|..++|+.++|++.+...++..|. +
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 468899999999987654322211000 0011122334568999999999999999999999998775 5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
.....++..++..++.|.++...+.+.=
T Consensus 295 l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 295 LNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 7789999999999999999988888864
No 292
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.31 Score=33.04 Aligned_cols=139 Identities=11% Similarity=0.082 Sum_probs=87.4
Q ss_pred hhhHHHHcccHH---HHHHHHHHHHHHhcccCCCChHHHHH-H-----HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 16 DGNLLFRAGKYW---RASKKYEKAAKIIEFHHSFTDDEKHQ-A-----NGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 16 ~g~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.|..+++..+.+ +|-..|.++++......+........ . ..+-....+.+|..+...+++++|+..++.++
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 366677665554 78888999998765333221111111 1 11222235567888899999999999999999
Q ss_pred hcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 87 ELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 87 ~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
..-.+. +-+-++++.+...+|.+++|+..+.....-. =.+......+.+....++..+. +..|.+..+
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~A-r~ay~kAl~ 187 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEA-RAAYEKALE 187 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHH-HHHHHHHHH
Confidence 654432 5567889999999999999998876432110 0133455566666655555443 446665544
No 293
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.13 Score=36.51 Aligned_cols=78 Identities=14% Similarity=-0.038 Sum_probs=65.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
......=..+...++++.|...-.+.+.++|.++.. ...+|.+|..+|.+.-|+.++...++..|
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 334444456778899999999999999999887643 67899999999999999999999999999
Q ss_pred ccHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAH 103 (159)
Q Consensus 91 ~~~~~~~~~~~~~ 103 (159)
+.+.+..-++...
T Consensus 247 ~~~~a~~ir~~l~ 259 (269)
T COG2912 247 DDPIAEMIRAQLL 259 (269)
T ss_pred CchHHHHHHHHHH
Confidence 9988877666554
No 294
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.73 E-value=0.82 Score=36.64 Aligned_cols=120 Identities=14% Similarity=0.119 Sum_probs=85.8
Q ss_pred HHHHHHHHhhhHHH-HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 8 EACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 8 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
..+......|.+++ ...+++.|..+..+++.+... +.. .+++..+-..++.++.+.+... |...+++.|
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 35778888999998 778999999999999999766 333 3455666667788888888777 999999999
Q ss_pred hcCCc----cHHHHHHHHH--HHHhhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Q 031461 87 ELEPL----NVKALYRRSQ--AHLKTSELEKAEADIKRALTID--PNNRVVKLVYMELK 137 (159)
Q Consensus 87 ~~~~~----~~~~~~~~~~--~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~ 137 (159)
..... .....+++-. .+...+++..|+..++...... +.++.+.-...-+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 86544 2333333332 2223379999999999988776 46666554444433
No 295
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.71 E-value=0.18 Score=38.12 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=76.8
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 96 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 96 (159)
-.++.-.|+|..|++.... +++.... -.....+-..++++-.|-+|+.+++|.+|+..|..++-.-......+
T Consensus 129 lRvh~LLGDY~~Alk~l~~-idl~~~~------l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~ 201 (404)
T PF10255_consen 129 LRVHCLLGDYYQALKVLEN-IDLNKKG------LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQY 201 (404)
T ss_pred HHHHHhccCHHHHHHHhhc-cCcccch------hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3566777899998887653 2221110 00111122456799999999999999999999998874322111111
Q ss_pred HHH-HHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Q 031461 97 YRR-SQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYM-ELKDKQREYAKYQAEIFGTMLSK 157 (159)
Q Consensus 97 ~~~-~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
... .+.-.-.+..++....+--++.+.|. +..+...+. +...++.+-...+...|..+|..
T Consensus 202 ~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ 266 (404)
T PF10255_consen 202 HQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSF 266 (404)
T ss_pred ccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 111 11112223445555556666777785 444444443 34455555555567788888864
No 296
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.63 E-value=0.11 Score=39.07 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=76.2
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 89 (159)
.+.+.|.-|...|+.+.|+.+|.++-+...+.... ...+.|.-.+..-+|+|..-..+..++...-
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khv------------Inm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHV------------INMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHH------------HHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 46778999999999999999999977776554322 4557788888889999999999999988762
Q ss_pred --C----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 90 --P----LNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 90 --~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
. -.++..+.-|.+...++.|..|.+.|-.+.
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 125566778888888999999998886653
No 297
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.61 E-value=0.33 Score=34.21 Aligned_cols=87 Identities=15% Similarity=0.021 Sum_probs=62.6
Q ss_pred cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC--c----cHHHHHH
Q 031461 25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP--L----NVKALYR 98 (159)
Q Consensus 25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~----~~~~~~~ 98 (159)
.....|+++.+|+......... .+...+...+|.-|+..|+|++|+.+++.+....- . ....+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~---------R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~ 223 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQN---------RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWR 223 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3455677777777766544332 44455677899999999999999999999965532 2 2566777
Q ss_pred HHHHHHhhCCHHHHHHHHHHHH
Q 031461 99 RSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 99 ~~~~~~~~~~~~~A~~~~~~al 120 (159)
+..|...+|+.+..+...-+.+
T Consensus 224 l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 224 LLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 8889999999988877655443
No 298
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.52 E-value=0.031 Score=27.25 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
+.+..+|.+....++|++|+.-|.+|+.+..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999854
No 299
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.52 E-value=0.24 Score=29.14 Aligned_cols=66 Identities=15% Similarity=-0.049 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHhh
Q 031461 29 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKT 106 (159)
Q Consensus 29 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~ 106 (159)
.+..+.+.+..+|.+ ..+.+.+|..+...|++++|+..+-.+++.++++ ..+--.+-.++..+
T Consensus 7 ~~~al~~~~a~~P~D---------------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDD---------------LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 345567777776665 4458899999999999999999999999999877 33334444444444
Q ss_pred CCH
Q 031461 107 SEL 109 (159)
Q Consensus 107 ~~~ 109 (159)
|.-
T Consensus 72 g~~ 74 (90)
T PF14561_consen 72 GPG 74 (90)
T ss_dssp -TT
T ss_pred CCC
Confidence 443
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.48 E-value=0.028 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666665543
No 301
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.85 Score=34.51 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=58.0
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHh----hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVL----ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
...+.+.+=.+|+..+.|+.|.....++. ..+..++..+|+.|.+..-.++|..|.+++-.|+...|.+.
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 34556677788899999999988777665 22345688999999999999999999999999999999753
No 302
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.33 E-value=0.44 Score=30.88 Aligned_cols=80 Identities=9% Similarity=0.000 Sum_probs=57.4
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.+..+.....+++++...+...-.+.|..+..-..-|-++...|+|.+|+..++......|..+-....+.-|...++..
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33334444777777777777777778888888888888888888888888888887777777676666666666555443
No 303
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.31 E-value=0.16 Score=35.98 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=50.1
Q ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 78 TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 78 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|..+|..|+.+.|++-..+..+|.+....|+.=.|+=+|-+++......+.+...+..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999986654456676666666655
No 304
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.31 E-value=0.38 Score=30.03 Aligned_cols=75 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
+-.+--++..+...|+|++++..-.++|.+...-.....++ -.++..+.+++|.....+|..++|+..|+.+-.+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44455566777889999999999999999987655544332 2456778899999999999999999999988653
No 305
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.21 E-value=0.34 Score=37.07 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=52.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
....+.+.|.-.|.+|+|.+++-+-....++.|+ ..+|..+|.|.+..++|++|..++...
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3566778889999999999999999999999773 355899999999999999999998654
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.20 E-value=0.49 Score=30.67 Aligned_cols=85 Identities=6% Similarity=-0.062 Sum_probs=66.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+.+........++++++-....-.=.+.|..+.. -..-|..++..|+|++|+..++.+....
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3445555566666888888877776655566666554 4566788899999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCH
Q 031461 90 PLNVKALYRRSQAHLKTSEL 109 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~ 109 (159)
+..+.+--.++.|++.+||.
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCchHHHHHHHHHHHhcCCh
Confidence 88888888899999999876
No 307
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.67 Score=38.41 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-------hhCHHHH-
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-------LEDYSET- 78 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A- 78 (159)
+.....-.+.|-.....|.+.+|+++|+.+|-..|-....+..+....+++...+...+.-.... ......+
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 34456667789999999999999999999998877554444455555555555543222222211 1223333
Q ss_pred -HHHHHHHhhcCCcc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 79 -SSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 79 -~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
+..|=.-..+.|-+ +-++..--..+++++++..|.....+.+++.|..+.+....
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 11111223445554 34444444478999999999999999999999876654433
No 308
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.87 E-value=1.2 Score=33.41 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=75.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC--CC-------Ch-----HH-HHHHHHHHHHHHhhHHHHHhhhhC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH--SF-------TD-----DE-KHQANGLRLSCYLNNAACKLKLED 74 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~-------~~-----~~-~~~~~~~~~~~~~~~a~~~~~~~~ 74 (159)
++.+.+.+.++..+|++..|.++.++|+-.....- .. +. +. ..+.-++ ..+.........+.|.
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~f-flal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQF-FLALFRYIQSLGRRGC 118 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHH-HHHHHHHHHHHHhcCc
Confidence 56788999999999999999999999987654211 11 00 00 1111222 2234455566778999
Q ss_pred HHHHHHHHHHHhhcCCc-cHHHHHHHHHHH-HhhCCHHHHHHHHHHHHh
Q 031461 75 YSETSSLCTKVLELEPL-NVKALYRRSQAH-LKTSELEKAEADIKRALT 121 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~ 121 (159)
+..|+++|+-.+.+||. ++-+....-+.| .+.++|+--+..++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999998 666655555544 666777766666665544
No 309
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.86 E-value=0.16 Score=36.02 Aligned_cols=62 Identities=16% Similarity=0.047 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh
Q 031461 29 ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK 105 (159)
Q Consensus 29 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 105 (159)
|..+|.+|+.+.|..+.. |+.+|..+...|+.-.|+-+|-+++-.....+.+.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 688999999999987644 99999999999999999999999998776678888888888877
No 310
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=94.72 E-value=0.41 Score=33.38 Aligned_cols=118 Identities=15% Similarity=0.039 Sum_probs=68.2
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH-HHH-HHHHHHHhh-cC-Ccc--HH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY-SET-SSLCTKVLE-LE-PLN--VK 94 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~-~~-~~~--~~ 94 (159)
|..|+|+.|++...-+|...-..|+. .......+...-...-+......|.. +-. ...+..+.. .+ |+. ++
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~---f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQ---FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcc---ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 67799999999999999985443321 11111122222233344444455542 111 111222211 11 343 44
Q ss_pred HHHHHHHHHH---------hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 95 ALYRRSQAHL---------KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 95 ~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
.+-..|..+. ..++...|+..+++|+.++|. ..+...+.++..+++.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhh
Confidence 4555666663 456788999999999999985 5677777777777653
No 311
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.70 E-value=0.52 Score=33.23 Aligned_cols=68 Identities=21% Similarity=0.140 Sum_probs=51.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.....+.|..++..|+|+.|+.+|..+.......+= ..+...+...+..|+..+|+.+..+..+-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345668899999999999999999999665443221 13345667788899999999999888775544
No 312
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.34 E-value=2.3 Score=34.31 Aligned_cols=124 Identities=12% Similarity=0.144 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC---CCh---HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS---FTD---DEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
+.+....+.|..-....+++.|+.+...|... |..+. +++ .+...... ..+|.-.+..--..|-++.....
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrS--lkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRS--LKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHh--HHHHHHHHHHHHHhccHHHHHHH
Confidence 45677777888888889999999988888764 33322 111 11111112 23466667777788899999999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CCcHHHHHHHH
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID--PNNRVVKLVYM 134 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 134 (159)
|+++|.+.--.|....+.|..+....-|++|.+.|++.+.+. |.-..++...-
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 999999988889999999999999999999999999998885 44455555443
No 313
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=94.31 E-value=0.82 Score=31.78 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=55.3
Q ss_pred HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.++.+...+|+.....-++-+|.+...-..+-+.+.-.|+|++|...++-+-.+.|+...
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 467788999999999999999999999999999999999999999999999999998743
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.31 E-value=2.3 Score=34.20 Aligned_cols=105 Identities=21% Similarity=0.087 Sum_probs=78.1
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-------CCCh----HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-------SFTD----DEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
+.--|......+..+.|.+++.++++...... ..+- +...-...+...+....+.+.+-+++|..|...
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~ 383 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE 383 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 33346777777878899999999998765422 1111 122334556666777888899999999999999
Q ss_pred HHHHhhcC---C------ccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 82 CTKVLELE---P------LNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 82 ~~~al~~~---~------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
...+.... | ..+..++-.|..+...|+.+.|...|.
T Consensus 384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 88877553 2 247788999999999999999999998
No 315
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=94.30 E-value=0.36 Score=31.02 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=38.8
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
-....+..+...+..|++.-|......++..+|+|..++.....+..+++...
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 44566777888888888888888888888888888888888888887776654
No 316
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.29 E-value=0.4 Score=39.56 Aligned_cols=109 Identities=15% Similarity=0.005 Sum_probs=71.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHh-------cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKII-------EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 84 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 84 (159)
.+...+..+-..++.+.|+++|+++-... ..+|..-+-.. ...-...+|..-|......|+.+.|+.+|..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv--~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV--RRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH--HhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 35556666667778888888887653321 11111100000 0000124567778888889999999998887
Q ss_pred Hhhc---------------------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 85 VLEL---------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 85 al~~---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|-.. ...+..+-|.+|..|...|++.+|+.+|.+|...
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 7422 2456778899999999999999999999887544
No 317
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.26 E-value=0.3 Score=24.63 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=12.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~al 120 (159)
.+|.+|...|+.+.|...++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
No 318
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=2 Score=33.40 Aligned_cols=102 Identities=21% Similarity=0.183 Sum_probs=81.1
Q ss_pred HHHHHHHHhhhHHH-HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHH
Q 031461 8 EACERKKHDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKV 85 (159)
Q Consensus 8 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~a 85 (159)
..+....+.|...+ ...+++.|....+++..+...-|... +.....+..++.+|.... .+..|...+.++
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34666777776664 67899999999999999987766552 445667888999998888 899999999999
Q ss_pred hhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 86 LELEPLN----VKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 86 l~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
|++.... .+..+.+++.+.-..++..|++.+.
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 9987654 4556778999999999999987753
No 319
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.14 E-value=0.92 Score=33.93 Aligned_cols=99 Identities=14% Similarity=-0.010 Sum_probs=75.8
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP- 90 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~- 90 (159)
+........++|.|..|+++.+-.+.++|. ||- -+.+-+-...++.++|+-=+..++.......
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--------------g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~ 171 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL--------------GVLLFIDYYALRSRQYQWLIDFSESPLAKCYR 171 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--------------hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh
Confidence 344456667899999999999999999887 442 2355666667778888877777777655211
Q ss_pred ----ccHHHHHHHHHHHHhhCCH---------------HHHHHHHHHHHhcCCC
Q 031461 91 ----LNVKALYRRSQAHLKTSEL---------------EKAEADIKRALTIDPN 125 (159)
Q Consensus 91 ----~~~~~~~~~~~~~~~~~~~---------------~~A~~~~~~al~~~p~ 125 (159)
.-|...+..+.+++..++- +.|...+.+|+...|.
T Consensus 172 ~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 172 NWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1356788899999999998 8999999999988874
No 320
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=94.06 E-value=0.15 Score=38.52 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=48.5
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHh--------hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVL--------ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
...+..++..+|+|..|++.++.+= +.-+-+...+|..|-+|.-+++|.+|++.|..++..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778889999999999876541 112345778999999999999999999999988643
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.99 E-value=1.8 Score=31.83 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 74 DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 74 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
-.+..+..+++|++.+|++...++.+=.+.....+-++..+-+++++..+|++...+..+-...
T Consensus 46 ~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3567788999999999999999999888899999999999999999999999877766655543
No 322
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.81 E-value=1.3 Score=33.22 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=51.4
Q ss_pred HhhHHHHHhh---hhCHHHHHHHHHHHh-hcCCccHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHhcCCCc
Q 031461 62 YLNNAACKLK---LEDYSETSSLCTKVL-ELEPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 62 ~~~~a~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~ 126 (159)
-...|.+.-. .|+.++|+..+..++ ...+.+++.+...|.+|-.. ...++|+.+|.++..++|+.
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 4455666666 899999999999954 55677899999999887544 25788999999999999764
No 323
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.75 E-value=3 Score=33.65 Aligned_cols=124 Identities=13% Similarity=0.185 Sum_probs=90.4
Q ss_pred HHHcccHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc----HH
Q 031461 20 LFRAGKYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN----VK 94 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~ 94 (159)
-+..|++.+-+.-|..|+.-. |..+.-. ...++...|..|...|+.+.|...++++.+..-.. +.
T Consensus 357 ~l~e~~~~~~i~tyteAv~~vdP~ka~Gs----------~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~ 426 (835)
T KOG2047|consen 357 KLYEGNAAEQINTYTEAVKTVDPKKAVGS----------PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAE 426 (835)
T ss_pred hhhcCChHHHHHHHHHHHHccCcccCCCC----------hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHH
Confidence 355677888888898888754 3322211 25678999999999999999999999999886433 77
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNN-------------------RVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
.|+.-|..-....+++.|+...++|..+ |.+ ..++..+..+.+..+-.+.. +..|.+++
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest-k~vYdrii 504 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST-KAVYDRII 504 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Confidence 8999999999999999999999998755 222 33556666666666655444 33555554
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.73 E-value=0.29 Score=33.32 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=47.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
.++.....|..| ...+...|+..+.+++++.+.+..++ ..++..+|.++.++|+++.|--+
T Consensus 140 t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 140 TAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhhhh
Confidence 355566666555 47899999999999999987664443 56689999999999999988543
No 325
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=93.67 E-value=0.72 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
.+..+..++..+=+.|++.+|+.+|+++++..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L 36 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVL 36 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 45566677777778888888888888877764
No 326
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.58 E-value=3 Score=33.12 Aligned_cols=92 Identities=22% Similarity=0.124 Sum_probs=69.8
Q ss_pred HHHhhhHHHHcc-----cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHH
Q 031461 13 KKHDGNLLFRAG-----KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTK 84 (159)
Q Consensus 13 ~~~~g~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~ 84 (159)
....|..|.+.. ++..|+.+|.++-.....+ ..+.+|.++..-. ++..|..+|..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~-----------------a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD-----------------AQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch-----------------HHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 445677776642 7888999999988864322 2678888877655 67899999988
Q ss_pred HhhcCCccHHHHHHHHHHHHhh----CCHHHHHHHHHHHHhcC
Q 031461 85 VLELEPLNVKALYRRSQAHLKT----SELEKAEADIKRALTID 123 (159)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~ 123 (159)
|.... ++.+.+++|.||..= -+...|..++.++-...
T Consensus 354 Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 87765 688889999988643 48888999999998777
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.55 E-value=0.18 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.8
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+++|..|..+|+++.|...+++++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3689999999999999999999999543
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.54 E-value=0.14 Score=22.49 Aligned_cols=23 Identities=26% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCT 83 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~ 83 (159)
+..++|..+...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 36789999999999999998775
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.47 E-value=0.42 Score=22.94 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=23.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHH--HHHHHHHhc
Q 031461 11 ERKKHDGNLLFRAGKYWRASKK--YEKAAKIIE 41 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~~ 41 (159)
+-+...|-.++.+|++++|+.. |.-+..+++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3456778999999999999999 547666644
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.15 E-value=2.7 Score=34.94 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=73.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++..--.|.+....|+++.|.+..+.++...|.+...+ +..++..+|.+..-.|++++|..+...+.+
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~----------r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS----------RIVALSVLGEAAHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh----------hhhhhhhhhHHHHHhchHHHHHHHHHHHHH
Confidence 3455555678889999999999999999999988765443 467789999999999999999999999887
Q ss_pred cC----C--ccHHHHHHHHHHHHhhCCH
Q 031461 88 LE----P--LNVKALYRRSQAHLKTSEL 109 (159)
Q Consensus 88 ~~----~--~~~~~~~~~~~~~~~~~~~ 109 (159)
+. . -...+.+..+.++..+|+.
T Consensus 526 ~a~~~~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 526 MARQHDVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHhhHH
Confidence 63 2 2355667788899999943
No 331
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.14 E-value=1 Score=36.60 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=32.1
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 118 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (159)
+...|+..+.+|++ ++...+.-|++.+.+=.+|+.+...|--++|++.|-+
T Consensus 827 ~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 827 NQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 44455555555554 2222333477777777788888888888888777654
No 332
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=93.03 E-value=0.47 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
..+-.+...|..+=+.|+|.+|+.+|..++...-
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999753
No 333
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.81 E-value=3.4 Score=31.45 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=51.9
Q ss_pred hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
.-+...|..+..+++++.|+-..+-..-+.+++..|+..++-..++.+-+.+|. +.+...+
T Consensus 242 dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY 302 (531)
T COG3898 242 DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLY 302 (531)
T ss_pred cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence 446888999999999999999999999999999999999999999999999885 4444433
No 334
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=92.59 E-value=1.5 Score=29.54 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=45.8
Q ss_pred hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
.......++..++.++..| ++..+.+++.++..+|+.++|.....++..+.|.+
T Consensus 124 ~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3345566677777888888 88889999999999999999999999999999944
No 335
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=2.9 Score=33.20 Aligned_cols=78 Identities=18% Similarity=0.029 Sum_probs=54.6
Q ss_pred HHHHhhHHHHHhhhhC-HHHHHHHHHHHhhcCCccHHHHHHH------HHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461 59 LSCYLNNAACKLKLED-YSETSSLCTKVLELEPLNVKALYRR------SQAHLKTSELEKAEADIKRALTIDPNNRVVKL 131 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 131 (159)
..++.++|......|. +.-+..+++.+....|.+..+...+ |.....+|+..++.....++..+.|.++.+..
T Consensus 101 ~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 101 CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 4557777777666664 4444555555888888886665555 77778888888888888888888888866555
Q ss_pred HHHHH
Q 031461 132 VYMEL 136 (159)
Q Consensus 132 ~~~~~ 136 (159)
.+.-.
T Consensus 181 ~~~~~ 185 (620)
T COG3914 181 ALMTA 185 (620)
T ss_pred HHHHH
Confidence 44443
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.40 E-value=3.2 Score=32.99 Aligned_cols=99 Identities=17% Similarity=0.009 Sum_probs=67.8
Q ss_pred HHHHhhhHHHH-----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-----CHHHHHHH
Q 031461 12 RKKHDGNLLFR-----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-----DYSETSSL 81 (159)
Q Consensus 12 ~~~~~g~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----~~~~A~~~ 81 (159)
.....|.+++. .++.+.|+.+|..+..-..... ......+.+.+|.+|.... ++..|+.+
T Consensus 246 a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a----------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~ 315 (552)
T KOG1550|consen 246 AQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA----------TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL 315 (552)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----------hhcCCccccHHHHHHhcCCCCccccHHHHHHH
Confidence 34445555543 3689999999999887200000 0001223778999988843 67889999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhc
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTI 122 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~ 122 (159)
+.++-.+. ++.+.+.+|.++..-. ++..|..+|..|-..
T Consensus 316 ~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 316 YTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred HHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 98887776 6778899999987665 678899999888644
No 337
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=1 Score=32.56 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=48.3
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 118 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (159)
..-+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 34455667899999999999999999999999999999999999999887665543
No 338
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=92.02 E-value=4.2 Score=30.73 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=44.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHH--HHHhhhhCHHHHHHHHHHHh
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA--ACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~al 86 (159)
.+......+..+|+.++|..|...+...+...+.... ...+..++ ..+...-++.+|...++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3566778888999999999999999998875222111 12233443 34455667888888887655
Q ss_pred h
Q 031461 87 E 87 (159)
Q Consensus 87 ~ 87 (159)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 3
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.02 E-value=1.1 Score=30.59 Aligned_cols=73 Identities=14% Similarity=0.037 Sum_probs=41.0
Q ss_pred hhhhCHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN----NRVVKLVYMELKDKQREY 143 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~ 143 (159)
.....-+.|..-|-.+=... -+++...+.+|-.|. ..+-++|+..+.+++.+.+. |+++...++.+...++..
T Consensus 117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 33333444555443332221 134555555555444 67777788888888777543 367777777776665554
No 340
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.95 E-value=0.56 Score=26.63 Aligned_cols=35 Identities=14% Similarity=-0.063 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
..+..+...|...=..|+|++|+.+|..+++..-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 34666777888888999999999999999998654
No 341
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=91.93 E-value=0.53 Score=26.72 Aligned_cols=35 Identities=14% Similarity=-0.056 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
+..+..+...|...-..|+|++|+.+|..+++..-
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45677788888888999999999999999999754
No 342
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=4.3 Score=32.26 Aligned_cols=72 Identities=19% Similarity=0.027 Sum_probs=59.7
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH-HHhcCCCcHHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR-ALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~ 136 (159)
++......+....+......++..+|.+..+..++|.+....|..-.+...+.. +....|.+..+...+-.+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 145 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRF 145 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence 677777888998899999999999999999999999998878877776666555 899999998877777333
No 343
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=4.5 Score=34.64 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=79.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC--
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-- 90 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-- 90 (159)
+...|+.+|..+.|+.|.-+|..+-. |..+|.+...+|+|..|....++|-....
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 45679999999999999999975322 77888888889999999888877632210
Q ss_pred -----------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 91 -----------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 91 -----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
-+++-+-.+...|...|-|++-+..++-++.++..+-.....++.+..+.
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 11333444666788889999999999999999988888777777776544
No 344
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.47 E-value=1.6 Score=24.84 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=28.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
.+..+...|..+=+.|+|++|+.+|..+++..-
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~ 37 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLI 37 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 466777888899999999999999999999754
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=91.41 E-value=2 Score=35.80 Aligned_cols=77 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHH
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALY 97 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 97 (159)
..+.+.|-.++|..+|.++-+. -.+-..|...|.|.+|.+..+.-=++.- -..||
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~-----------------------DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy 862 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY-----------------------DLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYY 862 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH-----------------------HHHHHHHHhcccHHHHHHHHhhccceeh--hhhHH
Confidence 3445666777777777766553 2334456777888888777655433332 34678
Q ss_pred HHHHHHHhhCCHHHHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+.+.-+...++.+.|+.+|+++
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhc
Confidence 8999999999999999999876
No 346
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.39 E-value=0.72 Score=26.31 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=28.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
.+..+...|..+=+.|+|++|+.+|.++|+..-
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999754
No 347
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.38 E-value=2.2 Score=26.20 Aligned_cols=72 Identities=8% Similarity=0.019 Sum_probs=54.6
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccH---HHHHHHHHHHHhhCC-----------HHHHHHHHHHHHhcCCCcHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSE-----------LEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 130 (159)
+|.-++..|++-+|++..+..+...+.+. -.+...|.++..+.. .-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45677889999999999999998876664 455667888876652 3348999999999999886555
Q ss_pred HHHHHH
Q 031461 131 LVYMEL 136 (159)
Q Consensus 131 ~~~~~~ 136 (159)
..++.-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 555544
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.36 E-value=2.3 Score=33.18 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=49.5
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHH
Q 031461 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRR 99 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 99 (159)
.+..|+.-.|-.-...++.-.|.+|.. ....+.++..+|.|+.+...+.-+-..-.....+..-+
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~ 363 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCR 363 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHH
Confidence 345566666666666666665555442 34556666667777777666554433322233333333
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 100 SQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
-...+.+|++++|...-.-.+.-+-+++
T Consensus 364 ~r~~~~l~r~~~a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 364 LRSLHGLARWREALSTAEMMLSNEIEDE 391 (831)
T ss_pred HHhhhchhhHHHHHHHHHHHhccccCCh
Confidence 3445556666666555544444433333
No 349
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.25 E-value=2.9 Score=29.97 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=39.2
Q ss_pred hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT-SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+...-..|+.....+|.++|.+-..|..+-.++..+ .+..+-+.++..+..-.|.|-.++.....+-+.++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLG 126 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhc
Confidence 333445555666666666666555555544444333 34555555666666666666666666555555554
No 350
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=91.21 E-value=0.89 Score=25.69 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
+..+..+...|...=..|+|++|+.+|..+++..-
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34677788888899999999999999999999754
No 351
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.14 E-value=0.69 Score=20.67 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 74 DYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 74 ~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
+++.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555555555555544433
No 352
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=90.94 E-value=1.9 Score=24.74 Aligned_cols=62 Identities=15% Similarity=-0.013 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC------CCChHHHHHHHHHHHHHHhhHHHHH
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH------SFTDDEKHQANGLRLSCYLNNAACK 69 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~ 69 (159)
+.+-.+.+.|..+=..|+.++|+.+|++++.....-. ....++|.....+...+-.+++.+-
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~ 73 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVK 73 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888889999999999999999864321 2223455555555555555555443
No 353
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.92 E-value=4.5 Score=31.79 Aligned_cols=66 Identities=21% Similarity=0.119 Sum_probs=55.8
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcC-----Cc--cHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhcCCCc
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELE-----PL--NVKALYRRSQAHLKTSE-LEKAEADIKRALTIDPNN 126 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~ 126 (159)
-++.+|.+...+|+...|..+++.++... .. .|-|+|.+|..+...|. ..++..++.+|.....+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 36788999999999999999999988332 11 28899999999999999 999999999998877554
No 354
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.91 E-value=5.8 Score=30.24 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=65.8
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHH--HHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAA--CKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.-.+....-.|+|+.|...|+--+. +|+ ...+..+|. -...+|..+.|..+.+.+-...|.
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~----dPE-------------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~ 186 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD----DPE-------------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ 186 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc----ChH-------------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC
Confidence 3345566677888888887765443 222 111222222 235689999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
-+.++.-.=......|+|+.|++......
T Consensus 187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 187 LPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999988889999999999999886654
No 355
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=90.82 E-value=2.6 Score=33.25 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=68.4
Q ss_pred HHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC---CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 66 AACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS---ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 66 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
|.-.+--+.+..|+..+.++++..|+....+.+++-++...+ +.-.|+.++..+++++|....++..+.++...+.+
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 333344566788999999999999999999999999998875 55568888899999999999999999999988888
Q ss_pred HHHHH
Q 031461 143 YAKYQ 147 (159)
Q Consensus 143 ~~~~~ 147 (159)
..+..
T Consensus 461 ~~eal 465 (758)
T KOG1310|consen 461 YLEAL 465 (758)
T ss_pred HHHhh
Confidence 76654
No 356
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.56 E-value=1.4 Score=28.31 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=41.3
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK 111 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (159)
.....+.-.+..|+|.-|...++.++..+|++..+...++.++.++|.-.+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 356777888899999999999999999999999999999999998875544
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.09 E-value=5.1 Score=36.97 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=59.2
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
..|..-|+.+.|..|+.+++.. . ..+.+ .......+..+-.+|..+++++.-......-.. +|
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~----~~ek~-------~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-~~---- 1450 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-R----STEKE-------KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-DP---- 1450 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-c----cccch-------hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-Cc----
Confidence 5678889999999999999875 1 11110 122233355555577777777765555433111 11
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
-+...-..+...|+++.|..+|+++++.+|+++
T Consensus 1451 sl~~qil~~e~~g~~~da~~Cye~~~q~~p~~~ 1483 (2382)
T KOG0890|consen 1451 SLYQQILEHEASGNWADAAACYERLIQKDPDKE 1483 (2382)
T ss_pred cHHHHHHHHHhhccHHHHHHHHHHhhcCCCccc
Confidence 134444556777888888888888888877754
No 358
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.93 E-value=4.3 Score=27.13 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc---cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL---NVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
...+..+|..|.+.|+++.|++.|.++...... ....++.+..+....+++........++-.+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999998776532 2777888999999999999999999998665
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.68 E-value=2.2 Score=31.08 Aligned_cols=52 Identities=23% Similarity=0.144 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+.+...+..|...|.+.+|++..++++.++|-+.+....+..+...++....
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is 331 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEIS 331 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchh
Confidence 3445567788999999999999999999999999999999988887766433
No 360
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=89.67 E-value=2.8 Score=36.20 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=82.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..++..+..+...+++.+|+..-.++.-+...-...+... ....|.+++...+..++...|+..+.++..+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 466778889999999999999999888877654322111110 1344888888888999999999999998765
Q ss_pred C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
. |..+-...+++.++...++++-|+.+.+.|+...
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3 4455566788889999999999999999998753
No 361
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.62 E-value=11 Score=31.54 Aligned_cols=107 Identities=18% Similarity=0.050 Sum_probs=80.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.+...-.+.......++.+|-.+..++....+...... ...+....--..|.+....+++++|...++.++..=
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L 488 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQL 488 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 34455667888889999999999888877755421111 112333444566777788999999999999999876
Q ss_pred Ccc-----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 90 PLN-----VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 90 ~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|.+ +.++...|.+..-.|++++|......+.+.
T Consensus 489 ~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 489 PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 644 667888999999999999999999888777
No 362
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=89.51 E-value=7.7 Score=32.99 Aligned_cols=66 Identities=23% Similarity=0.192 Sum_probs=49.0
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH-------HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL-------YRRSQAHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
|+.-|.+|..+|+|++-++++.-|++..|.+|... +++-++.+.. ...|....--++...|.....
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCcccccc
Confidence 88899999999999999999999999999886643 3344433332 334666666778888876443
No 363
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=89.43 E-value=1.6 Score=24.66 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
...+..+...|..+=..|++++|+.+|..+++..-
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLL 39 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34566677788888889999999999999999754
No 364
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=89.37 E-value=1.6 Score=24.54 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
..+..+...|...=..|+|++|+.+|..+++..-
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLL 37 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999999999754
No 365
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.08 E-value=1.5 Score=34.13 Aligned_cols=94 Identities=19% Similarity=0.144 Sum_probs=64.5
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL 96 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 96 (159)
+.+.-..|+|+.|......+-....... ++...+-....+++.+++|.....-.+.-.-.+++..
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~---------------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTD---------------STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCc---------------hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence 3444556777777777665555433211 1233444556788999999988888777666666666
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 97 YRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 97 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
.--+-.--++|-+++|.-.+++++.++|.
T Consensus 395 ~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 395 TVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred eeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 55666677888899999999999988774
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=6.2 Score=28.84 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=21.5
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
.+.++...+.+++++|+..|...+..
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k 32 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK 32 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 56778888889999999999887764
No 367
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=89.02 E-value=7.4 Score=29.01 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=58.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLEL--EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
-.|++....+..-.+.++...+-...- -..+.-++--+|..+.++|...+|...|.+++.+.++..+.......+
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 468888877777788887777666544 234566677799999999999999999999999999887665554443
No 368
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.96 E-value=4.3 Score=31.76 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=47.5
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC-HHHHHHHHHHHhhcCCccHHHHHH
Q 031461 22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVLELEPLNVKALYR 98 (159)
Q Consensus 22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~ 98 (159)
+.+.|.+--..|.+++...|++++. |...|.-.+.-+. ++.|...+.++|+.+|+++..|..
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~dL---------------WI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPDL---------------WIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCchh---------------HHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 4445888888999999998887654 5555555555554 999999999999999999776543
No 369
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.92 E-value=1.3 Score=19.72 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 107 SELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 107 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
|+.+.|...|++++...|.++.++......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888776654
No 370
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.82 E-value=6.6 Score=28.90 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHhhCC------------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 80 SLCTKVLELEPLNVKALYRRSQAHLKTSE------------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
.-+++.++-+|.++.+|+.+...--..-. .+.-+..|++|++.+|++......+-.+..++-
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 45788899999999999998876544432 455678899999999999888777777665553
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=10 Score=30.27 Aligned_cols=114 Identities=18% Similarity=0.135 Sum_probs=77.0
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc--------------
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL-------------- 88 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------------- 88 (159)
...|++|...|.-++...+.+... ......++....+..+|.++..+|+.+.|....+++|=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~---~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVL---ILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCccee---eeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 456888888887777764432110 011112445666889999999999998888877777611
Q ss_pred -------CCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Q 031461 89 -------EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPN-NRVVKLVYMELKDK 139 (159)
Q Consensus 89 -------~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 139 (159)
.|.| --++++.-..+.+.|.+.-|..+++-.++++|. ||-+...+-.+...
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~AL 389 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYAL 389 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHH
Confidence 1333 234555666778889999999999999999998 87655555555433
No 372
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.22 E-value=3.3 Score=29.06 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE 87 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 87 (159)
.+.|...|++|+.+.....+.+ .+++..+.+|.+..+.. +|+.++|...++.++.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~-------~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPT-------HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4788999999999877632221 26677778888877644 8999999998888764
No 373
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=88.16 E-value=1.9 Score=24.44 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
..+-.+...|...=..|+|++|+.+|..+++..-.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666777888888889999999999999998543
No 374
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.90 E-value=11 Score=29.14 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (159)
.+..||.++++-+-|+....+.+.++|.....+...+.|.+.+.++.+.-+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999887654
No 375
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.77 E-value=4.4 Score=29.26 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=53.4
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
....++..++..+...|+++.++..+++.+..+|-+..++..+.......+..... ...|.++-+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~a-i~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAA-IRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHH-HHHHHHHHH
Confidence 45778889999999999999999999999999999999998888888776666444 336665543
No 376
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=87.47 E-value=7.5 Score=33.80 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=80.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++...+.|......+.+.+|.. ...++.+..+-- ..+++-....|..++..+..++++++|+.+..++.-+
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii 1002 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII 1002 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee
Confidence 45677888888889999998888 555555544210 0111223677999999999999999999999888644
Q ss_pred C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
. |.....+-+++...+..++...|...+.+++.+
T Consensus 1003 ~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1003 SERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred echhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 2 556788888998899999999999999888765
No 377
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.21 E-value=7.8 Score=30.74 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 53 QANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 53 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
+..+.....|+.+-.-+... -+++....+++.+...|.++.+|-.....-...++|+.-...|.+||.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444445555555444333 677777777777777777777777777777777777777777777764
No 378
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.03 E-value=2.9 Score=30.76 Aligned_cols=69 Identities=6% Similarity=0.118 Sum_probs=51.7
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhh-HHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLN-NAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
..+....+.|-|.+--..|..|+...|.+.+. |.. .+.-+...+++.-+...+.++++++|++|
T Consensus 112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdl---------------WI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL---------------WIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee---------------eeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 33444456677888888899999988876543 433 44446678899999999999999999998
Q ss_pred HHHHH
Q 031461 94 KALYR 98 (159)
Q Consensus 94 ~~~~~ 98 (159)
..|+.
T Consensus 177 ~iw~e 181 (435)
T COG5191 177 RIWIE 181 (435)
T ss_pred hHHHH
Confidence 76654
No 379
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.01 E-value=9.1 Score=27.38 Aligned_cols=105 Identities=22% Similarity=0.042 Sum_probs=71.7
Q ss_pred HHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-------CHHHHHH
Q 031461 12 RKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-------DYSETSS 80 (159)
Q Consensus 12 ~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-------~~~~A~~ 80 (159)
.....|..+.. ..++.+|..+|.++........ ..+..++|.+|..-. +...|..
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 45566777765 4589999999999998743221 122456666655531 3347888
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
.+.++-... ++.+.+.+|.+|.. ..++.+|+.+|.++-.... ......+.
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~ 230 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG 230 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 888887766 78888888877744 4489999999999988776 44444444
No 380
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.99 E-value=9.4 Score=27.52 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=75.6
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
..-..|+.+-..+|.+.|.+ -+++.-+=.+... +.+..+-+.++.+++.-+|.+-..|..+-.+
T Consensus 57 E~S~RAl~LT~d~i~lNpAn---------------YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~i 121 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPAN---------------YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVI 121 (318)
T ss_pred ccCHHHHHHHHHHHHhCccc---------------chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence 34455666666666665433 2334444444444 4478888999999999999999999999999
Q ss_pred HHhhCCHH-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 103 HLKTSELE-KAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 103 ~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
..-.|+.. .-+...+.++..+..|-.+++...=+-...+.
T Consensus 122 ve~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~ 162 (318)
T KOG0530|consen 122 VELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKD 162 (318)
T ss_pred HHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhh
Confidence 99999888 78889999999999887777766655544443
No 381
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=86.46 E-value=6.1 Score=24.80 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=55.9
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh--cCCccHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQ 101 (159)
Q Consensus 24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~ 101 (159)
+.-..-...+.+|+.....++.+.++ +....++...+. .-. .+...|..... +....+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD------~RylkiWi~ya~----~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKND------ERYLKIWIKYAD----LSS--DPREIFKFLYSKGIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-------HHHHHHHHHHHT----TBS--HHHHHHHHHHHHTTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCC------HHHHHHHHHHHH----Hcc--CHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 44455566777777776655443221 223334444433 222 67777777664 55677999999999
Q ss_pred HHHhhCCHHHHHHHHHHHH
Q 031461 102 AHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 102 ~~~~~~~~~~A~~~~~~al 120 (159)
.+...|++++|...|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 382
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=86.41 E-value=1.4 Score=19.42 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=16.9
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
|..+-.+|.+.|++++|...+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666777777777777666544
No 383
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.26 E-value=4.4 Score=23.01 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=9.3
Q ss_pred HHHHHHHHHhcCCCcHHHH
Q 031461 112 AEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 112 A~~~~~~al~~~p~~~~~~ 130 (159)
|++.+.+++...|+++.-.
T Consensus 32 aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 32 AIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHhCCChHHHH
Confidence 3333444455567665433
No 384
>PF15469 Sec5: Exocyst complex component Sec5
Probab=86.23 E-value=7.8 Score=25.85 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.9
Q ss_pred HHHHcccHHHHHHHHHHHHHHhccc
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFH 43 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~ 43 (159)
.+...|+|+.++..|.++-.+....
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999886553
No 385
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=86.19 E-value=13 Score=28.43 Aligned_cols=102 Identities=12% Similarity=0.014 Sum_probs=65.4
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH-------HHHHHHHHH
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY-------SETSSLCTK 84 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~A~~~~~~ 84 (159)
..+.+|+.+|-.++|+.|...|..+.+-...+..+ -....+.--.|.|.+..+.. +....+++.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw---------~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAW---------KYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhH---------HHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 46778999999999999999999888755443221 22233344445555555422 233444444
Q ss_pred Hhh-----------cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 85 VLE-----------LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 85 al~-----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
++. .......+.+..+.++...+.+.+|...+-+....
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 332 11234667788888899999988887777666544
No 386
>PF12854 PPR_1: PPR repeat
Probab=85.40 E-value=2.6 Score=19.62 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKR 118 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (159)
+...|-.+-..|.+.|+.++|.+.|.+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 444555666666777777777666653
No 387
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=85.28 E-value=14 Score=27.73 Aligned_cols=99 Identities=21% Similarity=0.118 Sum_probs=64.6
Q ss_pred HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh----cC--CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLE----LE--PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 130 (159)
++..+-..+...|...++|.+|+......++ ++ +.-...+..-..+|+.+.+..+|...+..|......---..
T Consensus 126 LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpP 205 (411)
T KOG1463|consen 126 LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPP 205 (411)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCH
Confidence 3444556778899999999999998877763 33 33377888899999999999999999988865543211112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 131 LVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
...+.+.-+-+-....+ +.|++.|+
T Consensus 206 qlQa~lDLqSGIlha~e-kDykTafS 230 (411)
T KOG1463|consen 206 QLQATLDLQSGILHAAE-KDYKTAFS 230 (411)
T ss_pred HHHHHHHHhccceeecc-cccchHHH
Confidence 23333333334444444 45555543
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=18 Score=29.06 Aligned_cols=109 Identities=10% Similarity=0.088 Sum_probs=70.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc--CCCChHHHH--------HHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH--HSFTDDEKH--------QANGLRLSCYLNNAACKLKLEDYSETS 79 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~a~~~~~~~~~~~A~ 79 (159)
++.+...+..+..+|+.+-|.++..++|-..... |.+....+. ..-.+... +..--....+.|.|.-|.
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~-l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLA-LFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHH-HHHHHHHHHhcCChHHHH
Confidence 5678888888889999999998888888765432 111110000 01111111 222223345789999999
Q ss_pred HHHHHHhhcCCc-cHHHHHHHHHHH-HhhCCHHHHHHHHHHH
Q 031461 80 SLCTKVLELEPL-NVKALYRRSQAH-LKTSELEKAEADIKRA 119 (159)
Q Consensus 80 ~~~~~al~~~~~-~~~~~~~~~~~~-~~~~~~~~A~~~~~~a 119 (159)
++|.-++.++|. +|-+....-++| ....+|+=-+..++..
T Consensus 363 E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999998 788777777766 4556666666665554
No 389
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=84.49 E-value=5.3 Score=24.98 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 97 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 97 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
..+|+.+...|++++|...|-+|+.+.|.-......+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~q 104 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIYQ 104 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34788888888888888888888888887555444443
No 390
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=84.38 E-value=5 Score=22.03 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=10.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHH
Q 031461 99 RSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 99 ~~~~~~~~~~~~~A~~~~~~al 120 (159)
.|.-.-..|++++|+..|..++
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3333334555555555554443
No 391
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.01 E-value=12 Score=29.06 Aligned_cols=55 Identities=7% Similarity=0.022 Sum_probs=35.7
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHhhCCHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELE--------PLNVKALYRRSQAHLKTSELEKAEAD 115 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~ 115 (159)
.|..+|...+..|+++-|..+++++-..+ ..+...+-.++..-...|++.-|..+
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQA 411 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHH
Confidence 58888999999999999998888764322 34455555566665556655555433
No 392
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.92 E-value=4.3 Score=33.30 Aligned_cols=70 Identities=6% Similarity=0.030 Sum_probs=47.3
Q ss_pred HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
+....++.++|..+..+..|++|.++|.+.-. .-+..+|++.+..|++- +.+...-|++......++.
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~L----E~la~~Lpe~s~llp~~a~ 860 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGEL----EVLARTLPEDSELLPVMAD 860 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhH----HHHHHhcCcccchHHHHHH
Confidence 44566799999999999999999999865432 33566778888887653 3334444666555544444
Q ss_pred HH
Q 031461 136 LK 137 (159)
Q Consensus 136 ~~ 137 (159)
+.
T Consensus 861 mf 862 (1189)
T KOG2041|consen 861 MF 862 (1189)
T ss_pred HH
Confidence 43
No 393
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.86 E-value=6 Score=28.71 Aligned_cols=52 Identities=29% Similarity=0.275 Sum_probs=43.7
Q ss_pred hhhCHHHHHHHHHHHhhcCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 71 KLEDYSETSSLCTKVLELEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+..++++|+..|++++.+.+.. -+++-.+..+++.+++|++-...|.+.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4458999999999999999764 567888899999999999988888776543
No 394
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=83.67 E-value=21 Score=28.58 Aligned_cols=51 Identities=8% Similarity=0.064 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~ 140 (159)
..+...|..+|-.+++.++|.+|+..|-.+-.. ..+|.++.+.+-.|-..+
T Consensus 315 n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneL 371 (618)
T PF05053_consen 315 NHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANEL 371 (618)
T ss_dssp T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTH
T ss_pred CCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHH
Confidence 446777888999999999999999999887544 346777877777766543
No 395
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.88 E-value=18 Score=30.36 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=29.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
.++.++..|+.+|.+|++++|...|-++|....
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 467789999999999999999999999988643
No 396
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=82.36 E-value=24 Score=28.29 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=60.1
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-Cc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PL 91 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~ 91 (159)
+..-..--...|+++...-.|..|+--..... ..|...+.-....|+..-|...+..+.++. |.
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~---------------efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~ 364 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYD---------------EFWIKYARWMESSGDVSLANNVLARACKIHVKK 364 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH---------------HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCC
Confidence 33334444577888888888888887544322 224555555555566666665555555543 44
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.+...+.-+..-...|++..|...++++...-|+...
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVE 401 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhh
Confidence 5555555555566666666666666666655565543
No 397
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.28 E-value=4.7 Score=29.21 Aligned_cols=54 Identities=11% Similarity=0.173 Sum_probs=37.8
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+...+++|+..|.+++++.+..+.+. ..++-..-.+.+.+++|++-...+.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG-----------FKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG-----------FKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH-----------HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34589999999999999987766553 3345555556666777776666666654
No 398
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=81.71 E-value=5.9 Score=24.05 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
+...+......|...+-.|+|..|.+...++-+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4557888889999999999999999999999765
No 399
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=22 Score=27.19 Aligned_cols=78 Identities=15% Similarity=0.070 Sum_probs=45.7
Q ss_pred HhhHHHHHhhhh--CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC----CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 62 YLNNAACKLKLE--DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS----ELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 62 ~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
|+-+..+..+.+ +|..-+..|+++++.||.+-.+|..+-.+..... ...+-+++..+++.-++.|-+++.....
T Consensus 112 W~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~ 191 (421)
T KOG0529|consen 112 WHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSL 191 (421)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHH
Confidence 555555555444 3566677777777777776555554444333222 2455566666666667777776666666
Q ss_pred HHHH
Q 031461 136 LKDK 139 (159)
Q Consensus 136 ~~~~ 139 (159)
+...
T Consensus 192 lL~~ 195 (421)
T KOG0529|consen 192 LLST 195 (421)
T ss_pred HHHH
Confidence 5543
No 400
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=80.99 E-value=22 Score=26.97 Aligned_cols=83 Identities=11% Similarity=-0.013 Sum_probs=66.8
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhc----CCccHHHHHHHHHHHHh---hCCHHHHHHHHHH-HHhcCCCcHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLK---TSELEKAEADIKR-ALTIDPNNRVVKL 131 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~ 131 (159)
.+..++=.+|....+|+.-+...+..-.+ -+..+...+..|.++-+ .|+.++|+..+.. .....+.+++..-
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 34567777899999999988888777666 34567777888999988 9999999999999 4556778899999
Q ss_pred HHHHHHHHHHH
Q 031461 132 VYMELKDKQRE 142 (159)
Q Consensus 132 ~~~~~~~~~~~ 142 (159)
.++.+.+.+-.
T Consensus 222 L~GRIyKD~~~ 232 (374)
T PF13281_consen 222 LLGRIYKDLFL 232 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999987633
No 401
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.32 E-value=22 Score=26.49 Aligned_cols=109 Identities=12% Similarity=0.042 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
||+|. .+-....++..|-+.++|..|.....- +.... ....-..+....++..+|..|++.++..+|..+
T Consensus 97 sfeEq--v~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~t-------g~~~~d~~~kl~l~iriarlyLe~~d~veae~~ 166 (399)
T KOG1497|consen 97 SFEEQ--VASIRLHLASIYEKEQNWRDAAQVLVG-IPLDT-------GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAY 166 (399)
T ss_pred cHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHhc-cCccc-------chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45553 344456778899999999998776532 22211 111222344556688999999999999999999
Q ss_pred HHHH--hhcCCccHHHHHHHHHHH----HhhCCHHHHHHHHHHHH
Q 031461 82 CTKV--LELEPLNVKALYRRSQAH----LKTSELEKAEADIKRAL 120 (159)
Q Consensus 82 ~~~a--l~~~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al 120 (159)
.+++ +..+..|.......-.|| =..++|=+|-+.|.+..
T Consensus 167 inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 167 INRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 333445544444433333 33455656666665543
No 402
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=80.29 E-value=4.1 Score=18.17 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=16.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
|..+-.++.+.|++++|...+.....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566667777777776666544
No 403
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.03 E-value=26 Score=27.24 Aligned_cols=79 Identities=23% Similarity=0.180 Sum_probs=45.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..++.+|..+..+|+++.|..+|.++=+ +..+...|...|+-+.=....+.+.....
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----------------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKD-----------------------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT------------------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcC-----------------------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 4688899999999999999999987544 44555556666666554444444443333
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
.+. .-.++.-+|+.++.+..+.
T Consensus 405 ~n~-----af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 INI-----AFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHH-----HHHHHHHHT-HHHHHHHHH
T ss_pred HHH-----HHHHHHHcCCHHHHHHHHH
Confidence 221 1223444455555544443
No 404
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=79.85 E-value=12 Score=26.45 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHhcc-cCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461 26 YWRASKKYEKAAKIIEF-HHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE 87 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 87 (159)
-+.|...|+.|+++... -++. .+++..+.+|.+..|.. +++.++|....++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt--------~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPT--------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788889999887544 2222 25566667777777655 5888888877766653
No 405
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=79.16 E-value=25 Score=26.45 Aligned_cols=120 Identities=19% Similarity=0.139 Sum_probs=78.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH--HHHHHHHHh
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE--TSSLCTKVL 86 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--A~~~~~~al 86 (159)
++..-..-|..+...++|.-|..+|-.|++-...-... .. .....=|.-++. ..++..++ ++-....++
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~----v~---A~~sLKYMlLcK--IMln~~ddv~~lls~K~~l 278 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD----VK---ALTSLKYMLLCK--IMLNLPDDVAALLSAKLAL 278 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCCc----HH---HHHHHHHHHHHH--HHhcCHHHHHHHHhhHHHH
Confidence 35556667878888899999999999988865432211 11 111111334444 44555554 445556678
Q ss_pred hcCCccHHHHHHHHHHHH--hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHL--KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+.....+.+....++++. .+.+|..|+..|..-+..+| -+...+..+...+
T Consensus 279 ~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~---ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 279 KYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP---IVRSHLQSLYDNL 331 (411)
T ss_pred hccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh---HHHHHHHHHHHHH
Confidence 888888999999999985 55789999999888776655 4555555554433
No 406
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.33 E-value=15 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=27.8
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
.++...+-+..+|..++.+|.+|.+.|+..+|-..+.+|-.
T Consensus 108 i~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 108 IYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33334444456799999999999999999999988888753
No 407
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.15 E-value=12 Score=25.40 Aligned_cols=98 Identities=17% Similarity=0.101 Sum_probs=66.5
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh-hcCCc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL-ELEPL 91 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~~~ 91 (159)
....|.+..+.|+...|+..|..+-.-.+ .|. ..+-.+.+..|...+..|.|+....-.+..- .-+|-
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~----------~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m 165 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQ----------IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM 165 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhccCC-Ccc----------hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh
Confidence 34456677788888888888876554322 222 2223446667778889999998766654432 22333
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
...+---+|.+-++.|++.+|.++|.....
T Consensus 166 R~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 345555688889999999999999998876
No 408
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.02 E-value=11 Score=21.71 Aligned_cols=55 Identities=13% Similarity=0.003 Sum_probs=33.9
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH---HHHHhhCCHHHHHHHHH
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS---QAHLKTSELEKAEADIK 117 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~ 117 (159)
...|.-.+..++.++|+....++++..++.+..+..+| .+|...|.|.+++.+-.
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455677777777777777777666655555444 34566666666665543
No 409
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.75 E-value=21 Score=26.47 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
-+..+-.+...+...-..++|.+|+.+|..++++.
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 44455556666666677889999999988888864
No 410
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=77.33 E-value=5.4 Score=17.86 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=18.4
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
|..+-.++.+.|+++.|...++.-.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666777777888887777776554
No 411
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=77.31 E-value=31 Score=26.59 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH 44 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~ 44 (159)
+.+.-++-.|.+..-+.+|..|.++|..|+...|...
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 3455566677777777777888888877777766543
No 412
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=77.26 E-value=12 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
....|..+...|++++|+.+|-+|+...|.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999765
No 413
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.19 E-value=28 Score=25.96 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=63.3
Q ss_pred HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc--------cHHHHHHHHHHHHhhCCHHHHHHHHHHH--HhcCC
Q 031461 55 NGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL--------NVKALYRRSQAHLKTSELEKAEADIKRA--LTIDP 124 (159)
Q Consensus 55 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~a--l~~~p 124 (159)
.+....+..-+|..|-+-++|..|-..+. +|.++.. -....+++|.+|...++-.+|..+..++ +..+.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 34456677889999999999999876653 2333321 1345788999999999999999888887 44456
Q ss_pred CcHHHHHHHHHHHHHHH
Q 031461 125 NNRVVKLVYMELKDKQR 141 (159)
Q Consensus 125 ~~~~~~~~~~~~~~~~~ 141 (159)
.|+........|..+.-
T Consensus 178 ~Ne~Lqie~kvc~ARvl 194 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVL 194 (399)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 78888888888776653
No 414
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.12 E-value=7.7 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhh
Q 031461 76 SETSSLCTKVLE 87 (159)
Q Consensus 76 ~~A~~~~~~al~ 87 (159)
+.|..+.+++|+
T Consensus 6 ~~A~~~I~kaL~ 17 (79)
T cd02679 6 KQAFEEISKALR 17 (79)
T ss_pred HHHHHHHHHHhh
Confidence 333333333333
No 415
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.12 E-value=35 Score=26.60 Aligned_cols=112 Identities=10% Similarity=0.005 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC---HHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED---YSETSSLC 82 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~A~~~~ 82 (159)
.+..+-.+.+.|..+.....|++|+...-.|-+......+. ..+.=+-...+-..+..||+.+++ ..+|..-+
T Consensus 159 Almmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k----lLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL 234 (568)
T KOG2561|consen 159 ALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK----LLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL 234 (568)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH----HHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence 45567778999999999999999998876666554321100 000001112234466777777664 33333322
Q ss_pred H---HHhhc-------------CCccH------HHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 83 T---KVLEL-------------EPLNV------KALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 83 ~---~al~~-------------~~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
. +.+.. .+.+| ..++..|.+.+++|+-++|..+++.+..
T Consensus 235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2 22211 12222 2344579999999999999999988753
No 416
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.96 E-value=22 Score=24.14 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=77.4
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc-
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN- 92 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~- 92 (159)
+..+...-+.+..++|+.-|...-+-. ...+. ..+....|.+....|+-..|+.+|..+-.-.|..
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg--~g~Yp-----------vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTG--YGSYP-----------VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcC--CCcch-----------HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 345666678899999999998766542 22221 3457788999999999999999999988765432
Q ss_pred ---HHHHHHHHHHHHhhCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 93 ---VKALYRRSQAHLKTSELEKAEADIKRA-LTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 93 ---~~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.-+-++-+.++...|.|++-..-.+.. -.-+|--..+...++-...+-++.
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 335567778889999998875544432 112333345555555544443333
No 417
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=75.94 E-value=6.7 Score=18.27 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhcCC
Q 031461 75 YSETSSLCTKVLELEP 90 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~ 90 (159)
++.|...|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4445555555554443
No 418
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.70 E-value=31 Score=25.82 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=42.6
Q ss_pred hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461 72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKR 118 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (159)
....-+|+..++.++..+|.+...-+.+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 55678899999999999999999999999999999999999888854
No 419
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=75.47 E-value=15 Score=22.07 Aligned_cols=82 Identities=11% Similarity=0.045 Sum_probs=42.9
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYMEL 136 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~ 136 (159)
....-..+..|+..++++.....+......-..-|......+-+...-.+..+|..++++........ ..++..+..+
T Consensus 14 ~~~Le~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~aW~~y~~v 93 (100)
T PF08771_consen 14 YEALEEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQAWDIYYQV 93 (100)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHHHHHHHHH
Confidence 33455566667788888888887777655432223334444444444456667777777665432211 3344444444
Q ss_pred HHHH
Q 031461 137 KDKQ 140 (159)
Q Consensus 137 ~~~~ 140 (159)
..++
T Consensus 94 ~~~i 97 (100)
T PF08771_consen 94 YRRI 97 (100)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 420
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=75.31 E-value=12 Score=21.15 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHH
Q 031461 4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA 37 (159)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 37 (159)
++.++.+..+.+.|..+++.|++..|+.++.=+-
T Consensus 29 ~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~ 62 (75)
T PF04010_consen 29 EEILEMAESYLEDGKYFLEKGDYVNALACFSYAH 62 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999999876443
No 421
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.57 E-value=37 Score=26.09 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=62.3
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.+...+++-+.+...+++.+|++-.+|+.+..++.+.+ ++..-++.++++++.+|.|-.++....-+.......
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 34446788888999999999999999999999998776 478889999999999999988888877776665544
No 422
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=74.15 E-value=6.9 Score=17.59 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=15.0
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHL 104 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~ 104 (159)
+.+...++..+|.+-.+|..+--+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 45556666666666666655544443
No 423
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.04 E-value=29 Score=24.75 Aligned_cols=80 Identities=19% Similarity=0.076 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
..|+..|.++..... .....++|.+|.. ..++.+|..+|.++-.... ..+.+.++ +
T Consensus 172 ~~A~~~~~~aa~~~~-----------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELGN-----------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhcC-----------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 367777777766541 3447788888755 4489999999999999887 88889999 7
Q ss_pred HHhhC---------------CHHHHHHHHHHHHhcCCCc
Q 031461 103 HLKTS---------------ELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 103 ~~~~~---------------~~~~A~~~~~~al~~~p~~ 126 (159)
++..| +...|..++..+....+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 77666 7788888888877665543
No 424
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=73.80 E-value=13 Score=20.73 Aligned_cols=14 Identities=29% Similarity=0.280 Sum_probs=6.5
Q ss_pred hCCHHHHHHHHHHH
Q 031461 106 TSELEKAEADIKRA 119 (159)
Q Consensus 106 ~~~~~~A~~~~~~a 119 (159)
.|++++|+..|..+
T Consensus 21 ~g~~~eAl~~Y~~a 34 (77)
T smart00745 21 AGDYEEALELYKKA 34 (77)
T ss_pred cCCHHHHHHHHHHH
Confidence 44444444444443
No 425
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.02 E-value=65 Score=28.30 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=63.8
Q ss_pred HhhhHHHHcccHHHHHHHHHHH------HHHhcccC-CCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 15 HDGNLLFRAGKYWRASKKYEKA------AKIIEFHH-SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~a------l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+.|+++...+-|++|...|.+- +...-.+. ..+-....-..--...+|..+|.+.+..+...+|+..|=+
T Consensus 1053 ~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik--- 1129 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK--- 1129 (1666)
T ss_pred hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh---
Confidence 3467777788888888887542 21110000 0000000000000134588888888888888888887733
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
.+++..+....++-.+.|.|++-+.++..+.+-.
T Consensus 1130 --adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1130 --ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred --cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 3567778888888888899999888888886553
No 426
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.02 E-value=31 Score=24.61 Aligned_cols=98 Identities=10% Similarity=-0.001 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHHhhHHHHHhhhhC--------HHHH
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-FTDDEKHQANGLRLSCYLNNAACKLKLED--------YSET 78 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A 78 (159)
+..+.+..=+..+++.|++..|.++-.-.++....... .+++. ..+++.+...... ...|
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~-----------~~rl~~l~~~~~~~~p~r~~fi~~a 76 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEES-----------IARLIELISLFPPEEPERKKFIKAA 76 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHH-----------HHHHHHHHHHS-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHHhCCCCcchHHHHHHHH
Confidence 34566777778888999999999987777776554322 22111 1233333222221 2333
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
+.+. +.-...-.++..+..+|..+...|++.+|...|-
T Consensus 77 i~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 77 IKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3333 1112223568889999999999999998887764
No 427
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=72.72 E-value=16 Score=20.98 Aligned_cols=51 Identities=14% Similarity=0.203 Sum_probs=35.6
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031461 103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
+......+=|+..+.-.|..+|+|..+.........+..+- ++.|.+.|+=
T Consensus 5 L~~I~~~~Fa~~dl~LyLDTHP~d~~Al~~y~~~~~~~~~l----~~~Ye~~yGP 55 (78)
T PF12652_consen 5 LREIQEVSFAVVDLNLYLDTHPDDQEALEYYNEYSKQRKQL----KKEYEKRYGP 55 (78)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH----HHHHHHHhCC
Confidence 33444455577777778888999999988888876655554 4567676653
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.11 E-value=28 Score=23.69 Aligned_cols=33 Identities=9% Similarity=0.219 Sum_probs=21.7
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
--....++++.|.|++|.+.+++... +|++.+.
T Consensus 114 k~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 114 KEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 33445566777777777777777777 6665554
No 429
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=71.01 E-value=17 Score=28.01 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=42.2
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHH-H
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT-SELEKAEADIKRALTIDPN--NRVVKLVYMELK-D 138 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~-~ 138 (159)
+..|-+|+.+++|.+|+..|-.++-.-...-..+-..+.++-.. +..+.-...+.-++.+.|. |.+++..++.+. .
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d 355 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGD 355 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcc
Confidence 45666666666666666666555432111111111222222221 2233333444555666663 244444444432 2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031461 139 KQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~ 156 (159)
.+-.....+.+.|+++|.
T Consensus 356 ~ml~mqng~~q~~ks~f~ 373 (525)
T KOG3677|consen 356 KMLPMQNGDPQVFKSLFS 373 (525)
T ss_pred hhhhhhcCChHHHHHHHH
Confidence 222333345556666664
No 430
>PF13041 PPR_2: PPR repeat family
Probab=70.63 E-value=12 Score=18.78 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=20.2
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
.|..+-..+.+.|++++|...+++..+..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 36666667777777777777777776543
No 431
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=70.13 E-value=46 Score=25.36 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=42.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH--HhhhhCHHHHHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC--KLKLEDYSETSSLCT 83 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~~A~~~~~ 83 (159)
.......+..+|+.++|..|...|..++....+ +.. .-....+..++.+ +...-++.+|..+++
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-~~~---------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRRLLS-AVN---------HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhcccC-hhh---------hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344555677899999999999999999876432 111 1112334444444 445668888888887
No 432
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.02 E-value=9.3 Score=28.77 Aligned_cols=102 Identities=14% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh-hc
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL-EL 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~ 88 (159)
...+...++...+.+.+...+....+++......+.. ...+...+..+....++|.-+..+++--+ .+
T Consensus 102 ~~lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~q-----------lT~~H~~l~~~~L~ak~y~~~~p~ld~divei 170 (422)
T KOG2582|consen 102 FPLCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQ-----------LTSIHADLLQLCLEAKDYASVLPYLDDDIVEI 170 (422)
T ss_pred HHHHHHHHHHHHhcCCccccchHHHHHHHHhccCccc-----------hhhhHHHHHHHHHHhhcccccCCccchhHHHH
Confidence 4456667777777777777777777777765433211 12334455566667777766655544322 11
Q ss_pred ---CCc----c-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 89 ---EPL----N-VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 89 ---~~~----~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+|. . -..+|+-|.++..+++|+.|+-+|+.++..
T Consensus 171 ~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 171 CKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred hccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 222 2 334455666788899999999999888644
No 433
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.50 E-value=26 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
..++|..++.+|+++++..++-+||...+.
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 456899999999999999999999998665
No 434
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=69.47 E-value=43 Score=28.20 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=51.1
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhc------ccCCCCh----HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIE------FHHSFTD----DEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTK 84 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 84 (159)
..|..+-..|+++.|+..|-.+-.+.. ....+.. -+..+.+......|..+|..|...|+|+.|.+.|.+
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e 790 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTE 790 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHh
Confidence 346666677777777777643322110 0000000 011111222233456777778888888888777755
Q ss_pred HhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 85 VLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 85 al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
+=..+ .-...|.+.|.|.+|.+.-.++.
T Consensus 791 ~~~~~--------dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 791 ADLFK--------DAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred cchhH--------HHHHHHhccccHHHHHHHHHHhc
Confidence 43221 12234667778877766655554
No 435
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=69.39 E-value=10 Score=17.59 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=15.4
Q ss_pred HHHHHHH--HHHHhhC-----CHHHHHHHHHHHHh
Q 031461 94 KALYRRS--QAHLKTS-----ELEKAEADIKRALT 121 (159)
Q Consensus 94 ~~~~~~~--~~~~~~~-----~~~~A~~~~~~al~ 121 (159)
.+.+.+| .+|..-. +.++|+.+|+++-.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 4556666 3333222 46677777776654
No 436
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=69.11 E-value=24 Score=21.63 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
.-...+..+...|..++..|+.+.|.-+|.+.+.+.
T Consensus 33 ~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 33 RYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 345568889999999999999999999999999886
No 437
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.78 E-value=5.5 Score=29.70 Aligned_cols=44 Identities=11% Similarity=0.027 Sum_probs=36.1
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.++++.++..+..+.++++|++++..+....|.+....-.+...
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 45589999999999999999999999999999886654444333
No 438
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.14 E-value=44 Score=25.33 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
+-..+..+...|+.++..++++.|...|..|..+...
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999998654
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=66.81 E-value=42 Score=23.62 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=45.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHh---------hhhCHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL---------KLEDYSETS 79 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---------~~~~~~~A~ 79 (159)
.++...+.+...+..|..-+. +|...+......... .+.....+|...|..++ ..+++..|+
T Consensus 128 vaeev~~~A~~~~~ag~~~e~--~~~~~~~~l~~~~dm-------pd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al 198 (230)
T PHA02537 128 VAEEVANAALKAASAGESVEP--YFLRVFLDLTTEWDM-------PDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLAL 198 (230)
T ss_pred HHHHHHHHHHHHHHcCCCCCh--HHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHH
Confidence 355556666666666653221 122222222111111 23667788888888874 556889999
Q ss_pred HHHHHHhhcCCcc
Q 031461 80 SLCTKVLELEPLN 92 (159)
Q Consensus 80 ~~~~~al~~~~~~ 92 (159)
.++++|+.++|..
T Consensus 199 ~~L~rA~~l~~k~ 211 (230)
T PHA02537 199 ALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999864
No 440
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=66.76 E-value=24 Score=23.00 Aligned_cols=37 Identities=11% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 98 RRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 98 ~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
.+|+.+...| ++.+|...|-+|+.+.|.-......+.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq 132 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQ 132 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4899999999 999999999999999887555544443
No 441
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.26 E-value=50 Score=26.96 Aligned_cols=48 Identities=25% Similarity=0.171 Sum_probs=35.7
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+++|+++.|..... +.++..-|-.+|.+....+++..|.++|.++..+
T Consensus 648 l~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 56677776655432 2356666888999999999999999999888655
No 442
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=64.17 E-value=13 Score=16.80 Aligned_cols=26 Identities=35% Similarity=0.229 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhh----CCHHHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKT----SELEKAEADIKRAL 120 (159)
Q Consensus 95 ~~~~~~~~~~~~----~~~~~A~~~~~~al 120 (159)
+.+.+|.+|..- .+..+|+.+|+++-
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 444555554321 25556666665554
No 443
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.03 E-value=49 Score=23.40 Aligned_cols=61 Identities=10% Similarity=-0.081 Sum_probs=46.5
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
..+.+.+...+||.....-++..|.+..- ...+=..+.-.|+|++|..-++-+-++.|+..
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 45667888999999998888887765433 22333455678999999999999999998763
No 444
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=63.15 E-value=37 Score=22.10 Aligned_cols=30 Identities=17% Similarity=0.170 Sum_probs=25.7
Q ss_pred HHHhhhHHHHcc-cHHHHHHHHHHHHHHhcc
Q 031461 13 KKHDGNLLFRAG-KYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 13 ~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~ 42 (159)
....|..+...| ++.+|..+|-+||...|.
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 456788899999 999999999999998765
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.07 E-value=51 Score=26.92 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=39.4
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcC--------CccHHHHHHHHH-------------HHHhhCCHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELE--------PLNVKALYRRSQ-------------AHLKTSELEKAEADIKRA 119 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~-------------~~~~~~~~~~A~~~~~~a 119 (159)
|..+|.+.+..+++..|.+++.++-.+. ..+...+-.+|. +|..+|++++.+..+..-
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 7788999999999999999999885442 334443333333 466667777776665544
No 446
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.69 E-value=21 Score=26.94 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=46.6
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcC--------CccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELE--------PLNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
+...|+-++.++++++|...+..|..+. -.+..+++..|.+++..+++..++-.+-
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~na 107 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNA 107 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5677888899999999999999998653 3457899999999999999988875443
No 447
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.26 E-value=84 Score=25.16 Aligned_cols=93 Identities=14% Similarity=0.027 Sum_probs=60.6
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~ 92 (159)
+.-.+....-.|+-+.|+..++.++. +. ...+...++..+|.++.-+.+|..|-.++....... +|
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~--~~-----------~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP--IR-----------MKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc--HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hh
Confidence 34455566666778888888887766 11 124456678899999999999999999988877665 45
Q ss_pred HHHHHH--HHHHHHh--------hCCHHHHHHHHHHH
Q 031461 93 VKALYR--RSQAHLK--------TSELEKAEADIKRA 119 (159)
Q Consensus 93 ~~~~~~--~~~~~~~--------~~~~~~A~~~~~~a 119 (159)
..++|. .|-|+.. .|+.+.|...++.+
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 555544 3344432 33555554444443
No 448
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.92 E-value=15 Score=28.30 Aligned_cols=55 Identities=16% Similarity=0.172 Sum_probs=38.8
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCcc-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.+-..+..+|++. | .-+.+.++|.. ...-|..|-+|.-.++|.+|++.|-.++..
T Consensus 240 GLlR~H~lLgDhQ-a---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLly 301 (525)
T KOG3677|consen 240 GLLRMHILLGDHQ-A---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLY 301 (525)
T ss_pred HHHHHHHHhhhhH-h---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577788844 4 44456666543 223388999999999999999999887644
No 449
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=60.36 E-value=24 Score=26.89 Aligned_cols=32 Identities=6% Similarity=0.035 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCC
Q 031461 75 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSE 108 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 108 (159)
...|+.++++|.. .+.|..|...|.++..+|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 5567777777765 4567788888888888774
No 450
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=60.24 E-value=32 Score=25.57 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKL 131 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 131 (159)
+.+++..|....+.|..-+|+..|..|+++.|+-.....
T Consensus 19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 334555555566666666677777777766665544443
No 451
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.82 E-value=29 Score=19.32 Aligned_cols=13 Identities=31% Similarity=0.181 Sum_probs=6.2
Q ss_pred CCHHHHHHHHHHH
Q 031461 107 SELEKAEADIKRA 119 (159)
Q Consensus 107 ~~~~~A~~~~~~a 119 (159)
|++++|+..|..+
T Consensus 20 g~~~~Al~~Y~~a 32 (75)
T cd02656 20 GNYEEALELYKEA 32 (75)
T ss_pred CCHHHHHHHHHHH
Confidence 4555544444444
No 452
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.51 E-value=34 Score=20.14 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHH
Q 031461 4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA 37 (159)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 37 (159)
++-+..++.+.+-|..++..|++-.|+.+++=+-
T Consensus 35 e~~~~ma~~Y~~Dakyf~ekGD~vtAfa~~sYa~ 68 (90)
T COG1849 35 EDFVDMAESYFEDAKYFLEKGDYVTAFAALSYAH 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3456778888888888889999988888865433
No 453
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.46 E-value=42 Score=21.56 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=28.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 98 RRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 98 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
.+|+.+...|+++++...+-.|+.+-|.-......+.
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vlq 122 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVLQ 122 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 3788888888888888888888888887655544443
No 454
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.32 E-value=68 Score=23.50 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=68.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+-+.++..+-..+|..|++.++++++....+...++. -..-.+.+..+..---.+...+++|.+++.+.-+-.+.-.
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~-~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEP-AGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 344456677788899999999999999987443222111 0001122222222223567789999999988766555444
Q ss_pred ccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 91 LNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
+-|.-...++.+ |.+.++..... ..-.+--.+|+|.
T Consensus 115 klPpkIleLCILLysKv~Ep~aml-ev~~~WL~~p~Nq 151 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAML-EVASAWLQDPSNQ 151 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhCcccC
Confidence 445556677775 45566665543 3334444566663
No 455
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=58.54 E-value=28 Score=18.83 Aligned_cols=59 Identities=22% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
...|..++..|+|-+|-+.++.+-...+.. ...-+...+....|..+...|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~---------~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP---------ERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC---------HHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc---------hHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 456888999999999999988766532221 11233344455666777788888887654
No 456
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.39 E-value=15 Score=30.82 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=40.2
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
.-.+|+..|+|++|++++... |+. -.++...|+.+++.++|..|-+.|-+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t 415 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAET 415 (911)
T ss_pred HHHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 346789999999999987654 544 345777899999999999998888665
No 457
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.32 E-value=39 Score=27.87 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=32.3
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+...+...++|++|....++.-+.-| ..++..|+-+....+|.+|.+.|.+|
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred HhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34556777888888777666544443 34555566666666666666666554
No 458
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.85 E-value=1.1e+02 Score=24.95 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=47.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
.+..|..+...++.+.|-.+|++.+..+|+ .+++..+..++..|-...|...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 45 MLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 566777788889999999999999999998 777889999999999988887777
No 459
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=56.46 E-value=63 Score=22.22 Aligned_cols=66 Identities=9% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCC
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p 124 (159)
...+..+-..++..|+|+.|-+++--.++..+-+......+|. ++...+.-....++++......|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 3345666677788999999999999999998888777777776 55555555554466655544433
No 460
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=55.97 E-value=22 Score=31.28 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH 43 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~ 43 (159)
-.++..+-.|+.+...|+|.+|+..|..|+......
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~ 275 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS 275 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 457778889999999999999999999999986543
No 461
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=55.96 E-value=18 Score=22.02 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAK 38 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 38 (159)
+.+.....+.+.+..|+..|.+.+|++...+...
T Consensus 34 ~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 34 EVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3455667788999999999999999999987666
No 462
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.51 E-value=60 Score=21.72 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=29.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..++.+++.++...|+.++|.....++..+.|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45688899999999999999999999999999
No 463
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=55.47 E-value=37 Score=19.26 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCCCcH
Q 031461 112 AEADIKRALTIDPNNR 127 (159)
Q Consensus 112 A~~~~~~al~~~p~~~ 127 (159)
|+..|..++...|+..
T Consensus 32 aie~l~~~lk~e~d~~ 47 (77)
T cd02683 32 GIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHhhCCCHH
Confidence 3444444455566543
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.38 E-value=40 Score=23.00 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=27.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 101 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
.++...|.|++|.+.+++... +|++......+..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 357899999999999999998 88876665555544
No 465
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=53.52 E-value=1.2e+02 Score=24.44 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=47.2
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+...|.-.+++++...+........+. .....-+-+..+|..++.||...+.+.+|..++.+++.
T Consensus 159 r~Lm~~G~s~~vle~L~wa~~cmEssv~L---~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 159 RHLMTAGHSAKVLEYLLWASICMESSVPL---LTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHccchHHHHHHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34456788888888877665554433221 11122344677899999999999999999999999873
No 466
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=52.21 E-value=1.7e+02 Score=26.04 Aligned_cols=25 Identities=4% Similarity=-0.181 Sum_probs=19.7
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+...|..|...|+.++|+..+..+.
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhc
Confidence 4566888888999999998887653
No 467
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.68 E-value=1.3e+02 Score=24.34 Aligned_cols=80 Identities=19% Similarity=0.103 Sum_probs=59.9
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+..+-..+.....+.-..-.|++.+.... +--+++.+++||... .-++-...+++....+-++...-..+....+.+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEkik 146 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKIK 146 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 44444555666677777888888888774 667789999999888 4556667788888888888888888888777755
Q ss_pred HH
Q 031461 142 EY 143 (159)
Q Consensus 142 ~~ 143 (159)
..
T Consensus 147 ~s 148 (711)
T COG1747 147 KS 148 (711)
T ss_pred hh
Confidence 43
No 468
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=51.58 E-value=29 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
..+.|..++..|...-+.|...+||..|+.|+.+.|+
T Consensus 15 ~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 15 LAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCch
Confidence 4457888999999999999999999999999998654
No 469
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=51.29 E-value=57 Score=23.75 Aligned_cols=61 Identities=15% Similarity=0.005 Sum_probs=34.3
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+...-....|.++..+|+-.....++. .....+-..++..|+...+|+-|..||..|+.+.
T Consensus 49 ~~s~~~~~n~~e~~d~ALm~Ae~r~D~---------~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~ 109 (368)
T COG5091 49 WHSDATMENAKELLDKALMTAEGRGDR---------SKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLY 109 (368)
T ss_pred hhcccChhhHHHHHHHHHHhhhccCCc---------ceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 334445566666666666654433221 1112334455666677777777777777776654
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=50.79 E-value=1.6e+02 Score=25.16 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=38.0
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
+...-..|.+.|.|+.|.....+...-. ..+..|+..++-+-..|.|.+|.+.|-
T Consensus 794 ~~dai~my~k~~kw~da~kla~e~~~~e-~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 794 FKDAIDMYGKAGKWEDAFKLAEECHGPE-ATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred hHHHHHHHhccccHHHHHHHHHHhcCch-hHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 3344455677788888877666554332 235567778888999999999987764
No 471
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.51 E-value=1.4e+02 Score=24.58 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=41.2
Q ss_pred HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..+..++++.+..++...-.-........|.+|.++...|+-++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 445677888777777665443345678899999999889999999999988743
No 472
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.05 E-value=1.4e+02 Score=24.31 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=49.1
Q ss_pred HHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 67 ACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 67 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.+.-+.+..+.+....+.-+.-...++...+..+..+..-+..+.|-.+|++....+|+|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEAR 77 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcchH
Confidence 33445556676666666666666677888999999999999999999999999999999643
No 473
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=49.58 E-value=1e+02 Score=22.48 Aligned_cols=111 Identities=8% Similarity=0.095 Sum_probs=73.2
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhH--HHHHhhhhCH----HHHHHHHHHHhhcCC
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNN--AACKLKLEDY----SETSSLCTKVLELEP 90 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~----~~A~~~~~~al~~~~ 90 (159)
-..+...++|++--..|.+.......+.+.+. . |... +.+...+... ..-...++.-+.-.|
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~-----------~-Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P 74 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQ-----------R-YFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACP 74 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccc-----------h-HHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCC
Confidence 34667889999998999888765444332210 0 1111 1111222211 135667777788999
Q ss_pred ccHHHHHHHHHHHHhhC----------------------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTS----------------------ELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
++.-+++.+|..+.... -.+.|...+.+++.++|....+...+..+-..
T Consensus 75 ~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~ 145 (277)
T PF13226_consen 75 KSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAY 145 (277)
T ss_pred CChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhh
Confidence 99999999998887764 45668888999999999987777666665443
No 474
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=49.37 E-value=1.4e+02 Score=24.19 Aligned_cols=54 Identities=13% Similarity=-0.050 Sum_probs=38.9
Q ss_pred HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|...++..-|...|+-.++..++.+...+....-+..+++-..|...|++++..
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 445677777777777777777777777777777777777777777777777655
No 475
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=48.37 E-value=92 Score=21.72 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=50.0
Q ss_pred HhhHHHHHhhhh-CHHHHHHHHHH-Hh-hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLE-DYSETSSLCTK-VL-ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 62 ~~~~a~~~~~~~-~~~~A~~~~~~-al-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..+.|..|.... .|-+++..+.. ++ .-+|....++...|.+...+..+-+-+-.=-.-.-..|.+.-+...+..++.
T Consensus 28 ~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~ 107 (215)
T cd07642 28 IHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKG 107 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHH
Confidence 455566665533 57777777666 33 3445567777788887777766655432111112234555445555555554
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031461 139 KQREYAKYQAEIFGTML 155 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (159)
.+++.=++..+.|..++
T Consensus 108 d~KK~fdK~~~dyE~~~ 124 (215)
T cd07642 108 DLKKPFDKAWKDYETKV 124 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44443333344444443
No 476
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.23 E-value=2.7e+02 Score=27.04 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=58.1
Q ss_pred HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
....+|++.|......|+++.|..+.-+|.... -+.++..+|+.+-+.|+...|+..++..+..
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 347789999999999999999999998888877 5788999999999999999999999999865
No 477
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=47.81 E-value=1.4e+02 Score=23.72 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
-+..-|+-+|+++-.|+.+.+-+...|.+++-.+.|++.....|--+.++....
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~ 83 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYM 83 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHh
Confidence 455567778888888888888888888888888888888877776666655443
No 478
>PF15469 Sec5: Exocyst complex component Sec5
Probab=47.22 E-value=83 Score=20.90 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=26.3
Q ss_pred HHhhCCHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHH
Q 031461 103 HLKTSELEKAEADIKRALTIDP----NNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+...|+|+.++..|.++..+.. ..+........|...+.....
T Consensus 96 ~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~ 142 (182)
T PF15469_consen 96 CIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFRE 142 (182)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888866632 334455555555555544433
No 479
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=46.96 E-value=1.7e+02 Score=24.29 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=15.8
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
|..-|..+++++++..|..-|.+++++.
T Consensus 590 W~AWGlA~Lk~e~~aaAR~KFkqafklk 617 (1141)
T KOG1811|consen 590 WHAWGLACLKAENLAAAREKFKQAFKLK 617 (1141)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 4444555555555555555555555554
No 480
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=46.48 E-value=1.3e+02 Score=22.76 Aligned_cols=45 Identities=9% Similarity=0.114 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
++.+++--...|+...++|..++..+..|+|..|-.++.....+.
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~ 159 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALV 159 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhc
Confidence 344444445678899999999999999999999988877665553
No 481
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=45.46 E-value=1e+02 Score=23.41 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHhc
Q 031461 107 SELEKAEADIKRALTI 122 (159)
Q Consensus 107 ~~~~~A~~~~~~al~~ 122 (159)
+....++..|+.++..
T Consensus 323 ~~l~~sl~~y~~vv~y 338 (371)
T PF12309_consen 323 ENLEKSLEYYKWVVDY 338 (371)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555544
No 482
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.32 E-value=1e+02 Score=24.62 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 95 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
..+.+|.--+..|+|.=+.+.+.+++.-+|+|..++...+.+.++++=+.
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqa 503 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQA 503 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhh
Confidence 35667777788999999999999999999999999999999998886543
No 483
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=45.14 E-value=57 Score=18.41 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 107 SELEKAEADIKRALTI-------DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 107 ~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
|+|++|+.+|..++.. +++ +. ....+..++.++-.+-...+...
T Consensus 20 ~~y~eA~~~Y~~~i~~~~~~~k~e~~-~~---~k~~ir~K~~eYl~RAE~i~~~~ 70 (75)
T cd02677 20 GDYEAAFEFYRAGVDLLLKGVQGDSS-PE---RREAVKRKIAEYLKRAEEILRLH 70 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCC-HH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666655443 433 22 23444555555555544444443
No 484
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.00 E-value=53 Score=20.53 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=23.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+..|..-|..+...|++.+|...++.+|
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3457788999999999999999998875
No 485
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=43.99 E-value=71 Score=19.50 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=27.5
Q ss_pred hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
|-+...+++..+..|.-+.+.|+|++|......+
T Consensus 12 iI~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA 45 (105)
T COG1447 12 IILHAGNARSKAYEALKAAKEGDFEEAEELIQEA 45 (105)
T ss_pred HHHHcccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445678888888899999999999998887766
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=43.53 E-value=1.4e+02 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+++|+=++.+....|.+++.+..|+.|+..
T Consensus 140 aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 140 AKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 344444444444455555555555554443
No 487
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=42.94 E-value=1.6e+02 Score=23.09 Aligned_cols=46 Identities=24% Similarity=0.161 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
..+.++-.+|++.|+..+|++.-.-.+.-+|++..++..+.-=+..
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~ 179 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTM 179 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhc
Confidence 5678889999999999999999998899999998887777665533
No 488
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=42.93 E-value=84 Score=19.71 Aligned_cols=63 Identities=10% Similarity=-0.063 Sum_probs=48.8
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCc----------------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPL----------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
+.++-.++...|+.+....+++....++.+ +...+..+..+|...|++..|++.........|
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 445556666788888888888887655411 266788888999999999999999998888766
No 489
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.76 E-value=29 Score=26.82 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.-+..+.|.||-.++++++|+.+|+++|.+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHH
No 490
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=42.44 E-value=51 Score=18.22 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEK 35 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~ 35 (159)
+.+...-+.++..|+|.+|...-..
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3466778899999999999887643
No 491
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=42.42 E-value=1.1e+02 Score=21.11 Aligned_cols=30 Identities=7% Similarity=-0.004 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+++++..|+|+..+|+...|+..+..+...
T Consensus 133 aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 133 AEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 778888999999999998888888887654
No 492
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.26 E-value=74 Score=22.37 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhc-----CCccH---HHHHHHHHHH-HhhCCHHHHHHHHHHHHhc
Q 031461 75 YSETSSLCTKVLEL-----EPLNV---KALYRRSQAH-LKTSELEKAEADIKRALTI 122 (159)
Q Consensus 75 ~~~A~~~~~~al~~-----~~~~~---~~~~~~~~~~-~~~~~~~~A~~~~~~al~~ 122 (159)
.+.|...|+.|+.+ .|.+| ...++.+..| ...|+.++|+...+.++.-
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46677777777643 45443 3444555544 5589999998888777643
No 493
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=42.08 E-value=1.5e+02 Score=22.39 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.+..+.+...+.-.|.-|+|..|..+.=-...+.+..... ....+|..+|. -..+.+|+.|++.+.+.-
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n----------~lsalwGKlAS-EIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRN----------YLSALWGKLAS-EILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchh----------hHHHHHHHHHH-HHHHhhHHHHHHHHHHHH
Confidence 3457788888999999999999998854444433321110 11233444432 345678999988888765
Q ss_pred h
Q 031461 87 E 87 (159)
Q Consensus 87 ~ 87 (159)
.
T Consensus 195 e 195 (432)
T KOG2758|consen 195 E 195 (432)
T ss_pred H
Confidence 4
No 494
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=41.61 E-value=68 Score=24.60 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=8.8
Q ss_pred HhhHHHHHhhhhC
Q 031461 62 YLNNAACKLKLED 74 (159)
Q Consensus 62 ~~~~a~~~~~~~~ 74 (159)
|.++|.+++.+|+
T Consensus 353 Wv~vAEa~I~LGN 365 (404)
T PF12753_consen 353 WVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 6677777766664
No 495
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=41.52 E-value=8.7 Score=30.53 Aligned_cols=103 Identities=16% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH--
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV-- 85 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-- 85 (159)
.....+...+..+...|++..|...+...-.. +-++. .........|.+....|++..|+..++..
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~-~L~~~-----------q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~ 89 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQ-QLSPS-----------QQARYQLLRARLALAQGDPEQALSLLNAQDL 89 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccc-cCChH-----------HHHHHHHHHHHHHHhcCCHHHHHHHhccCCc
Confidence 34566777788889999999999888765421 10111 12334567788889999999999998751
Q ss_pred hhcCC-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 86 LELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 86 l~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
..+.+ .....+..++.++...|++-+|...+-..-.+
T Consensus 90 ~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 90 WQLPPEQQARYHQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp --------------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 12222 23556666899999999998888776555444
No 496
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=40.52 E-value=95 Score=23.38 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
+..+++++++..++- .-...-..++.+.|.-|.+-|+-+.|.+++.+...
T Consensus 83 ki~eld~~iedaeen-lGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 83 KIKELDEKIEDAEEN-LGESEVREAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 497
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=40.51 E-value=1.5e+02 Score=21.79 Aligned_cols=121 Identities=14% Similarity=0.046 Sum_probs=68.4
Q ss_pred HHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc------c
Q 031461 19 LLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL------N 92 (159)
Q Consensus 19 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~------~ 92 (159)
.++..++.-.|+..|...+.-.|.+-..--... .-....|.....|+ ..-....|.+.++.|+-+... -
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a----~~lEk~~~~Fs~~~-s~~~~~n~~e~~d~ALm~Ae~r~D~~~I 78 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKA----ACLEKLYFGFSDWH-SDATMENAKELLDKALMTAEGRGDRSKI 78 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehh----hhHHHHHhhhhhhh-cccChhhHHHHHHHHHHhhhccCCccee
Confidence 344556666677777666555444321110000 00112233333333 334567788888888755321 1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
--+-++++..|+...+|+-|..+|..|+.+..++ ....+..++...+.+..+
T Consensus 79 G~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d-~L~~We~rLet~L~~~~k 130 (368)
T COG5091 79 GLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD-TLPLWEDRLETKLNKKNK 130 (368)
T ss_pred eeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHhHhhH
Confidence 3355778999999999999999999999885544 233344444444444333
No 498
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=40.49 E-value=69 Score=19.08 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
.+++..+..+.-..+.|+|++|...++++
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a 40 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEA 40 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46677777788888888888888887766
No 499
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.29 E-value=2e+02 Score=23.24 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=14.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 97 YRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 97 ~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
+.++..|...+.|.+|+..|.++..
T Consensus 426 ~~iA~sY~a~~K~~EAlALy~Ra~s 450 (593)
T KOG2460|consen 426 FYIAVSYQAKKKYSEALALYVRAYS 450 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666655543
No 500
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.28 E-value=1.4e+02 Score=21.39 Aligned_cols=63 Identities=14% Similarity=-0.047 Sum_probs=41.5
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHH----------------hhcCCccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhc
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKV----------------LELEPLNVKALYRRSQA-HLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~a----------------l~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~ 122 (159)
.+...+|..+.+-+++.+|..++-.. ..-.|.....++.+|.+ |...++...|...+....+.
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45667777777888888777765321 12346666777777765 78889999998877666554
Done!