Query 031461
Match_columns 159
No_of_seqs 135 out of 1605
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkv_A Putative peptidylprolyl 100.0 3.6E-27 1.2E-31 153.7 13.6 154 3-156 4-161 (162)
2 4gco_A Protein STI-1; structur 99.9 2.4E-24 8.3E-29 135.2 16.0 114 8-136 11-124 (126)
3 1kt0_A FKBP51, 51 kDa FK506-bi 99.9 1.1E-23 3.9E-28 157.8 20.7 157 2-158 260-416 (457)
4 1p5q_A FKBP52, FK506-binding p 99.9 2.9E-23 1E-27 150.0 21.9 156 3-158 140-295 (336)
5 2hr2_A Hypothetical protein; a 99.9 8.2E-25 2.8E-29 141.2 11.8 142 1-145 2-154 (159)
6 2fbn_A 70 kDa peptidylprolyl i 99.9 4.2E-23 1.4E-27 138.4 19.5 157 1-157 29-186 (198)
7 1ihg_A Cyclophilin 40; ppiase 99.9 5E-22 1.7E-26 145.3 16.8 155 2-156 215-370 (370)
8 2if4_A ATFKBP42; FKBP-like, al 99.9 8E-22 2.7E-26 142.6 12.0 157 1-157 170-328 (338)
9 3upv_A Heat shock protein STI1 99.9 7.3E-21 2.5E-25 118.6 14.7 117 9-140 3-125 (126)
10 4gcn_A Protein STI-1; structur 99.9 8.9E-21 3.1E-25 118.9 13.7 113 7-135 5-124 (127)
11 3gyz_A Chaperone protein IPGC; 99.9 3.9E-20 1.3E-24 119.4 13.9 104 9-127 35-138 (151)
12 3sz7_A HSC70 cochaperone (SGT) 99.8 9.8E-20 3.4E-24 118.5 15.3 123 7-144 8-132 (164)
13 2xcb_A PCRH, regulatory protei 99.8 5.5E-20 1.9E-24 117.2 13.5 123 9-146 17-139 (142)
14 2vgx_A Chaperone SYCD; alterna 99.8 5.4E-20 1.8E-24 118.3 12.6 120 9-143 20-139 (148)
15 4ga2_A E3 SUMO-protein ligase 99.8 1.1E-19 3.7E-24 117.0 13.5 115 9-138 30-145 (150)
16 3urz_A Uncharacterized protein 99.8 2E-18 6.9E-23 116.6 17.5 133 10-142 4-137 (208)
17 4ga2_A E3 SUMO-protein ligase 99.8 6.1E-20 2.1E-24 118.2 9.0 114 16-144 3-116 (150)
18 3q49_B STIP1 homology and U bo 99.8 1.6E-18 5.5E-23 109.0 14.5 121 9-144 8-133 (137)
19 4gyw_A UDP-N-acetylglucosamine 99.8 2.2E-18 7.6E-23 135.2 17.0 131 8-154 7-137 (723)
20 1a17_A Serine/threonine protei 99.8 4E-17 1.4E-21 105.3 19.6 120 3-137 6-125 (166)
21 2vyi_A SGTA protein; chaperone 99.8 9.6E-18 3.3E-22 103.8 15.9 125 3-142 5-129 (131)
22 1elw_A TPR1-domain of HOP; HOP 99.8 7.4E-18 2.5E-22 102.6 15.0 114 9-137 3-116 (118)
23 2pl2_A Hypothetical conserved 99.8 6.5E-18 2.2E-22 114.8 14.2 120 11-145 6-136 (217)
24 4i17_A Hypothetical protein; T 99.8 2.5E-17 8.4E-22 112.1 16.6 128 11-154 8-143 (228)
25 2xev_A YBGF; tetratricopeptide 99.8 1.1E-17 3.7E-22 104.1 13.6 117 11-139 3-122 (129)
26 1hxi_A PEX5, peroxisome target 99.8 5.6E-18 1.9E-22 105.2 11.7 102 12-128 19-120 (121)
27 2lni_A Stress-induced-phosphop 99.8 1.7E-17 5.9E-22 103.2 13.3 117 9-140 15-131 (133)
28 1elr_A TPR2A-domain of HOP; HO 99.8 3.7E-17 1.3E-21 101.2 14.4 119 9-143 3-128 (131)
29 2dba_A Smooth muscle cell asso 99.8 1.7E-17 6E-22 105.1 13.1 117 9-137 27-143 (148)
30 4gyw_A UDP-N-acetylglucosamine 99.8 1.3E-17 4.4E-22 130.9 14.8 122 10-146 43-164 (723)
31 3vtx_A MAMA; tetratricopeptide 99.8 8E-17 2.7E-21 106.1 16.5 146 9-155 4-168 (184)
32 2pl2_A Hypothetical conserved 99.8 6.1E-17 2.1E-21 110.0 16.3 128 10-154 39-177 (217)
33 2h6f_A Protein farnesyltransfe 99.7 4.5E-17 1.5E-21 119.6 13.5 78 62-139 169-246 (382)
34 1na0_A Designed protein CTPR3; 99.7 7.2E-16 2.5E-20 94.5 15.7 115 10-139 9-123 (125)
35 3vtx_A MAMA; tetratricopeptide 99.7 7.1E-16 2.4E-20 101.5 16.6 119 10-128 39-176 (184)
36 2h6f_A Protein farnesyltransfe 99.7 1.2E-16 4.2E-21 117.2 13.2 123 9-146 96-219 (382)
37 4i17_A Hypothetical protein; T 99.7 1.1E-15 3.8E-20 103.9 17.1 118 11-143 43-169 (228)
38 3k9i_A BH0479 protein; putativ 99.7 4.1E-17 1.4E-21 100.4 8.6 103 22-136 2-104 (117)
39 3gyz_A Chaperone protein IPGC; 99.7 2.7E-17 9.2E-22 106.1 7.7 96 59-155 36-131 (151)
40 1zu2_A Mitochondrial import re 99.7 1.5E-16 5E-21 102.5 10.9 104 21-139 13-137 (158)
41 2c2l_A CHIP, carboxy terminus 99.7 5E-16 1.7E-20 109.4 14.5 102 10-126 4-105 (281)
42 3qky_A Outer membrane assembly 99.7 1.5E-15 5.1E-20 105.4 16.7 119 10-140 52-198 (261)
43 1hh8_A P67PHOX, NCF-2, neutrop 99.7 9.4E-16 3.2E-20 103.0 14.9 127 9-154 5-147 (213)
44 3urz_A Uncharacterized protein 99.7 1.8E-15 6E-20 102.1 16.0 107 15-137 59-200 (208)
45 3qky_A Outer membrane assembly 99.7 6.8E-16 2.3E-20 107.1 13.7 109 10-130 15-134 (261)
46 2e2e_A Formate-dependent nitri 99.7 3E-15 1E-19 98.0 16.1 114 10-138 44-160 (177)
47 3ieg_A DNAJ homolog subfamily 99.7 1.7E-15 5.8E-20 108.2 15.4 122 11-143 235-356 (359)
48 1wao_1 Serine/threonine protei 99.7 2.9E-16 9.8E-21 118.3 11.4 118 8-140 4-121 (477)
49 4gco_A Protein STI-1; structur 99.7 1.1E-15 3.6E-20 95.6 11.4 96 59-155 13-108 (126)
50 2fo7_A Synthetic consensus TPR 99.7 6.6E-15 2.3E-19 91.1 15.0 128 11-154 2-129 (136)
51 2kck_A TPR repeat; tetratricop 99.7 5.8E-16 2E-20 93.4 9.6 102 11-127 7-111 (112)
52 3uq3_A Heat shock protein STI1 99.7 3.5E-15 1.2E-19 102.3 14.4 112 10-136 139-256 (258)
53 3as5_A MAMA; tetratricopeptide 99.7 1.5E-14 5E-19 94.3 16.6 121 11-146 43-163 (186)
54 3uq3_A Heat shock protein STI1 99.7 8.1E-15 2.8E-19 100.4 15.9 144 10-154 79-233 (258)
55 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.1E-14 7.2E-19 99.4 17.8 114 8-136 41-154 (275)
56 4abn_A Tetratricopeptide repea 99.7 4.8E-15 1.6E-19 111.5 15.0 121 11-146 171-311 (474)
57 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.3E-14 4.3E-19 98.9 15.8 110 10-131 4-134 (225)
58 2vsy_A XCC0866; transferase, g 99.6 8.7E-15 3E-19 112.0 16.3 129 10-154 23-154 (568)
59 4abn_A Tetratricopeptide repea 99.6 6.6E-15 2.2E-19 110.7 15.0 128 10-154 102-247 (474)
60 3u4t_A TPR repeat-containing p 99.6 4.1E-15 1.4E-19 103.1 12.7 74 61-134 76-149 (272)
61 3as5_A MAMA; tetratricopeptide 99.6 1.3E-14 4.6E-19 94.5 14.2 123 9-146 7-129 (186)
62 2q7f_A YRRB protein; TPR, prot 99.6 3.5E-14 1.2E-18 96.6 16.4 118 11-143 58-175 (243)
63 3ieg_A DNAJ homolog subfamily 99.6 2E-14 6.9E-19 102.7 15.9 111 10-135 3-116 (359)
64 2yhc_A BAMD, UPF0169 lipoprote 99.6 2E-14 6.9E-19 97.9 15.0 132 10-154 41-210 (225)
65 2pzi_A Probable serine/threoni 99.6 2.1E-15 7E-20 118.0 11.3 120 11-146 434-553 (681)
66 1fch_A Peroxisomal targeting s 99.6 7.6E-15 2.6E-19 105.7 13.5 122 10-146 217-349 (368)
67 4eqf_A PEX5-related protein; a 99.6 8.5E-15 2.9E-19 105.7 13.6 127 14-154 181-307 (365)
68 2q7f_A YRRB protein; TPR, prot 99.6 2.3E-14 7.9E-19 97.5 14.9 122 10-146 91-212 (243)
69 2vgx_A Chaperone SYCD; alterna 99.6 2E-15 7E-20 96.7 9.1 108 31-154 8-115 (148)
70 2vq2_A PILW, putative fimbrial 99.6 6.2E-14 2.1E-18 94.1 16.7 136 10-145 8-165 (225)
71 2y4t_A DNAJ homolog subfamily 99.6 2.8E-14 9.5E-19 105.4 16.3 121 11-142 258-378 (450)
72 1hh8_A P67PHOX, NCF-2, neutrop 99.6 1.5E-14 5.2E-19 97.0 13.6 103 10-127 37-155 (213)
73 2pzi_A Probable serine/threoni 99.6 8.7E-16 3E-20 120.1 8.4 114 10-139 467-580 (681)
74 1w3b_A UDP-N-acetylglucosamine 99.6 1E-14 3.6E-19 106.2 13.1 118 12-144 239-356 (388)
75 4eqf_A PEX5-related protein; a 99.6 1.2E-14 4.1E-19 105.0 13.3 122 10-146 213-346 (365)
76 1w3b_A UDP-N-acetylglucosamine 99.6 4.1E-14 1.4E-18 103.0 16.1 136 11-146 170-324 (388)
77 2vq2_A PILW, putative fimbrial 99.6 1E-13 3.5E-18 93.1 16.9 120 13-145 79-200 (225)
78 2ho1_A Type 4 fimbrial biogene 99.6 8.1E-14 2.8E-18 95.6 16.4 78 62-139 108-187 (252)
79 3qou_A Protein YBBN; thioredox 99.6 2.9E-14 1E-18 100.7 14.4 130 10-155 117-282 (287)
80 2gw1_A Mitochondrial precursor 99.6 4E-14 1.4E-18 105.9 15.9 107 6-128 2-108 (514)
81 2r5s_A Uncharacterized protein 99.6 2E-14 6.7E-19 94.4 12.5 131 11-157 7-173 (176)
82 1qqe_A Vesicular transport pro 99.6 3.6E-14 1.2E-18 100.3 14.3 128 9-145 76-217 (292)
83 2ho1_A Type 4 fimbrial biogene 99.6 5.7E-14 1.9E-18 96.3 14.7 123 9-146 36-160 (252)
84 3u4t_A TPR repeat-containing p 99.6 3.5E-14 1.2E-18 98.4 13.7 117 11-142 75-191 (272)
85 3fp2_A TPR repeat-containing p 99.6 1.2E-14 4E-19 109.5 12.0 112 1-128 16-127 (537)
86 3hym_B Cell division cycle pro 99.6 4.3E-14 1.5E-18 100.0 14.1 122 11-147 91-213 (330)
87 3hym_B Cell division cycle pro 99.6 1.1E-13 3.9E-18 97.9 16.1 133 11-143 23-175 (330)
88 3cv0_A Peroxisome targeting si 99.6 6.2E-14 2.1E-18 99.1 14.6 122 10-146 172-305 (327)
89 2e2e_A Formate-dependent nitri 99.6 4.4E-15 1.5E-19 97.3 8.1 125 15-155 15-142 (177)
90 1fch_A Peroxisomal targeting s 99.6 1.2E-13 4.3E-18 99.3 16.4 143 11-154 133-311 (368)
91 2y4t_A DNAJ homolog subfamily 99.6 1.8E-13 6.3E-18 101.0 17.5 114 8-136 24-140 (450)
92 3mkr_A Coatomer subunit epsilo 99.6 7.9E-14 2.7E-18 98.7 14.4 115 11-142 131-249 (291)
93 2xcb_A PCRH, regulatory protei 99.6 1.4E-14 4.8E-19 91.9 9.5 95 59-154 18-112 (142)
94 2kat_A Uncharacterized protein 99.6 9.3E-14 3.2E-18 84.8 12.8 101 28-143 3-105 (115)
95 3edt_B KLC 2, kinesin light ch 99.6 6.5E-14 2.2E-18 96.9 13.4 139 8-154 41-195 (283)
96 2l6j_A TPR repeat-containing p 99.6 2.3E-15 7.8E-20 91.0 5.1 94 10-118 4-103 (111)
97 1qqe_A Vesicular transport pro 99.6 8.6E-14 2.9E-18 98.3 13.6 131 7-146 34-177 (292)
98 3upv_A Heat shock protein STI1 99.6 9.1E-14 3.1E-18 86.1 12.1 95 59-154 4-98 (126)
99 1hxi_A PEX5, peroxisome target 99.6 2.5E-13 8.7E-18 84.0 13.3 93 62-155 20-112 (121)
100 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.8E-14 2E-18 97.2 11.4 127 16-154 11-137 (275)
101 2fo7_A Synthetic consensus TPR 99.5 3E-13 1E-17 83.4 13.3 102 10-126 35-136 (136)
102 4gcn_A Protein STI-1; structur 99.5 2.8E-14 9.4E-19 89.1 7.9 88 59-146 8-102 (127)
103 2gw1_A Mitochondrial precursor 99.5 3.7E-13 1.3E-17 100.6 15.0 120 11-139 373-495 (514)
104 3fp2_A TPR repeat-containing p 99.5 2.2E-13 7.6E-18 102.5 13.8 138 8-146 241-397 (537)
105 4g1t_A Interferon-induced prot 99.5 5.5E-13 1.9E-17 99.2 15.6 126 10-141 51-186 (472)
106 3ulq_A Response regulator aspa 99.5 7.5E-13 2.6E-17 96.4 15.8 132 7-146 140-283 (383)
107 3ro3_A PINS homolog, G-protein 99.5 6.5E-13 2.2E-17 84.5 13.5 132 6-146 5-148 (164)
108 3sz7_A HSC70 cochaperone (SGT) 99.5 4.5E-13 1.5E-17 86.7 12.2 95 59-154 11-105 (164)
109 3mkr_A Coatomer subunit epsilo 99.5 6.2E-13 2.1E-17 94.1 13.9 97 21-132 177-274 (291)
110 3cv0_A Peroxisome targeting si 99.5 1.9E-12 6.5E-17 91.4 16.4 136 11-146 90-259 (327)
111 2l6j_A TPR repeat-containing p 99.5 5.8E-13 2E-17 80.2 11.9 83 59-141 4-92 (111)
112 2xpi_A Anaphase-promoting comp 99.5 1.3E-12 4.6E-17 99.6 16.4 129 10-154 373-501 (597)
113 2vsy_A XCC0866; transferase, g 99.5 3.2E-13 1.1E-17 103.3 12.3 116 23-154 2-117 (568)
114 1na3_A Designed protein CTPR2; 99.5 7.9E-13 2.7E-17 76.9 11.2 81 59-139 9-89 (91)
115 3edt_B KLC 2, kinesin light ch 99.5 7E-13 2.4E-17 91.7 12.8 109 7-122 82-198 (283)
116 2hr2_A Hypothetical protein; a 99.5 5.6E-13 1.9E-17 85.9 11.0 95 59-154 11-128 (159)
117 3q15_A PSP28, response regulat 99.5 1.6E-12 5.6E-17 94.6 14.7 132 7-146 138-280 (378)
118 3n71_A Histone lysine methyltr 99.5 3.8E-12 1.3E-16 96.1 16.6 141 6-154 305-461 (490)
119 3u3w_A Transcriptional activat 99.5 1E-12 3.5E-17 92.7 12.6 124 10-142 115-251 (293)
120 3q49_B STIP1 homology and U bo 99.5 1.6E-12 5.4E-17 81.2 12.1 95 59-154 9-103 (137)
121 2ifu_A Gamma-SNAP; membrane fu 99.5 9.1E-13 3.1E-17 93.7 12.2 108 9-127 115-228 (307)
122 3ulq_A Response regulator aspa 99.5 2.2E-12 7.5E-17 94.0 14.3 109 7-124 181-295 (383)
123 2xpi_A Anaphase-promoting comp 99.5 5.4E-12 1.8E-16 96.3 17.0 145 10-155 305-468 (597)
124 3q15_A PSP28, response regulat 99.5 4E-12 1.4E-16 92.6 15.3 109 8-125 180-293 (378)
125 4a1s_A PINS, partner of inscut 99.5 1.9E-12 6.4E-17 94.6 13.5 125 7-142 45-181 (411)
126 3nf1_A KLC 1, kinesin light ch 99.5 3.5E-12 1.2E-16 89.4 14.3 140 7-154 66-221 (311)
127 3nf1_A KLC 1, kinesin light ch 99.5 2.4E-12 8.3E-17 90.3 13.4 140 8-155 109-305 (311)
128 3u3w_A Transcriptional activat 99.4 2E-12 6.7E-17 91.3 12.6 107 9-123 154-267 (293)
129 2ifu_A Gamma-SNAP; membrane fu 99.4 8.4E-13 2.9E-17 93.9 10.6 108 9-126 75-188 (307)
130 2kc7_A BFR218_protein; tetratr 99.4 2.2E-13 7.7E-18 80.8 6.3 67 64-130 5-72 (99)
131 1na3_A Designed protein CTPR2; 99.4 3.9E-12 1.3E-16 73.9 11.5 84 9-107 8-91 (91)
132 2qfc_A PLCR protein; TPR, HTH, 99.4 5.8E-12 2E-16 88.8 14.2 127 11-146 116-255 (293)
133 1p5q_A FKBP52, FK506-binding p 99.4 4E-12 1.4E-16 91.7 13.4 99 9-122 195-294 (336)
134 3sf4_A G-protein-signaling mod 99.4 5.4E-12 1.8E-16 91.6 14.0 129 9-146 186-326 (406)
135 2kck_A TPR repeat; tetratricop 99.4 1.9E-12 6.4E-17 77.6 9.5 95 60-155 7-104 (112)
136 3rkv_A Putative peptidylprolyl 99.4 2.9E-12 9.8E-17 82.7 10.7 95 59-154 11-123 (162)
137 2ond_A Cleavage stimulation fa 99.4 5.2E-12 1.8E-16 89.7 12.9 119 11-143 100-219 (308)
138 3ro2_A PINS homolog, G-protein 99.4 4.4E-12 1.5E-16 89.4 12.2 122 10-142 5-138 (338)
139 3gw4_A Uncharacterized protein 99.4 8.1E-12 2.8E-16 82.8 12.7 129 9-146 25-166 (203)
140 3ma5_A Tetratricopeptide repea 99.4 4.1E-12 1.4E-16 75.8 10.0 68 59-126 7-74 (100)
141 1elw_A TPR1-domain of HOP; HOP 99.4 1.4E-11 4.6E-16 74.4 12.3 95 59-154 4-98 (118)
142 3sf4_A G-protein-signaling mod 99.4 4.7E-12 1.6E-16 91.9 11.9 122 10-142 9-142 (406)
143 1a17_A Serine/threonine protei 99.4 8.9E-12 3.1E-16 79.9 12.0 98 10-122 47-146 (166)
144 2xev_A YBGF; tetratricopeptide 99.4 8.9E-12 3.1E-16 77.0 11.2 93 62-155 5-103 (129)
145 2kc7_A BFR218_protein; tetratr 99.4 8.7E-12 3E-16 73.8 10.7 63 57-127 32-95 (99)
146 3ro3_A PINS homolog, G-protein 99.4 1.2E-11 4.1E-16 78.5 12.1 108 9-125 48-161 (164)
147 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5.1E-16 86.7 13.4 136 9-154 182-329 (338)
148 4g1t_A Interferon-induced prot 99.4 5.9E-13 2E-17 99.0 6.1 110 13-134 337-471 (472)
149 2lni_A Stress-induced-phosphop 99.4 1.5E-11 5.1E-16 75.9 11.3 95 59-154 16-110 (133)
150 4a1s_A PINS, partner of inscut 99.4 1.1E-11 3.8E-16 90.5 12.2 129 9-146 222-362 (411)
151 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 7E-13 2.4E-17 99.3 5.6 95 59-154 268-377 (457)
152 2ond_A Cleavage stimulation fa 99.3 3.5E-11 1.2E-15 85.4 13.8 96 26-136 80-177 (308)
153 2vyi_A SGTA protein; chaperone 99.3 5E-11 1.7E-15 73.1 12.8 96 58-154 11-106 (131)
154 1ouv_A Conserved hypothetical 99.3 1.1E-10 3.8E-15 81.0 15.6 109 10-139 6-122 (273)
155 2qfc_A PLCR protein; TPR, HTH, 99.3 1.6E-10 5.6E-15 81.4 16.5 130 8-146 73-215 (293)
156 2fbn_A 70 kDa peptidylprolyl i 99.3 5.4E-12 1.8E-16 84.0 8.3 95 59-154 38-148 (198)
157 3qww_A SET and MYND domain-con 99.3 9.8E-11 3.3E-15 87.1 15.4 120 10-136 298-430 (433)
158 2dba_A Smooth muscle cell asso 99.3 6.2E-11 2.1E-15 74.5 12.4 95 59-154 28-125 (148)
159 2c2l_A CHIP, carboxy terminus 99.3 4E-11 1.4E-15 84.3 12.2 94 59-153 4-97 (281)
160 1pc2_A Mitochondria fission pr 99.3 7.3E-11 2.5E-15 75.2 11.8 103 25-142 13-120 (152)
161 1wao_1 Serine/threonine protei 99.3 4E-12 1.4E-16 95.7 7.0 102 10-126 40-154 (477)
162 1na0_A Designed protein CTPR3; 99.3 1.1E-10 3.7E-15 71.0 12.1 88 59-146 9-96 (125)
163 2if4_A ATFKBP42; FKBP-like, al 99.3 4.2E-12 1.4E-16 91.6 6.6 103 11-128 231-334 (338)
164 1elr_A TPR2A-domain of HOP; HO 99.3 4.6E-11 1.6E-15 73.3 10.2 95 59-154 4-105 (131)
165 4f3v_A ESX-1 secretion system 99.3 1.2E-10 4E-15 81.8 12.6 109 12-134 137-248 (282)
166 3k9i_A BH0479 protein; putativ 99.3 1.5E-11 5.2E-16 75.2 6.7 83 71-154 2-87 (117)
167 3qwp_A SET and MYND domain-con 99.2 6.7E-10 2.3E-14 82.6 16.4 123 9-138 286-421 (429)
168 1dce_A Protein (RAB geranylger 99.2 8.2E-10 2.8E-14 84.8 17.0 115 11-140 64-191 (567)
169 2v5f_A Prolyl 4-hydroxylase su 99.2 2.4E-10 8.2E-15 68.7 10.9 83 10-100 5-87 (104)
170 3rjv_A Putative SEL1 repeat pr 99.2 3.6E-10 1.2E-14 76.2 12.9 129 10-139 18-174 (212)
171 1ouv_A Conserved hypothetical 99.2 1.1E-09 3.6E-14 76.1 15.5 107 11-138 39-157 (273)
172 2r5s_A Uncharacterized protein 99.2 3.5E-11 1.2E-15 78.7 7.4 111 10-121 40-172 (176)
173 3rjv_A Putative SEL1 repeat pr 99.2 2.8E-10 9.4E-15 76.8 11.9 78 59-139 50-137 (212)
174 3gw4_A Uncharacterized protein 99.2 3.6E-10 1.2E-14 74.7 12.1 109 8-124 64-178 (203)
175 2v5f_A Prolyl 4-hydroxylase su 99.2 7E-10 2.4E-14 66.6 11.4 79 62-140 8-93 (104)
176 1hz4_A MALT regulatory protein 99.2 1.4E-09 4.8E-14 78.6 15.1 128 9-145 52-192 (373)
177 1dce_A Protein (RAB geranylger 99.2 9.3E-10 3.2E-14 84.6 14.4 116 11-141 29-157 (567)
178 3bee_A Putative YFRE protein; 99.2 6.3E-10 2.2E-14 65.6 10.3 78 59-136 6-86 (93)
179 1ihg_A Cyclophilin 40; ppiase 99.2 3.2E-10 1.1E-14 82.8 10.8 95 59-154 223-333 (370)
180 3ma5_A Tetratricopeptide repea 99.2 1.5E-10 5.2E-15 68.9 7.3 84 10-108 7-92 (100)
181 1zu2_A Mitochondrial import re 99.1 5.2E-10 1.8E-14 71.9 10.0 72 70-141 13-94 (158)
182 2ooe_A Cleavage stimulation fa 99.1 1E-09 3.5E-14 83.3 13.3 115 11-139 322-437 (530)
183 3dra_A Protein farnesyltransfe 99.1 2.1E-09 7E-14 76.6 13.6 116 11-141 68-194 (306)
184 3dra_A Protein farnesyltransfe 99.1 1.8E-09 6.1E-14 76.9 13.1 104 24-142 124-235 (306)
185 3q7a_A Farnesyltransferase alp 99.1 8E-09 2.7E-13 74.7 16.2 110 20-144 64-176 (349)
186 3dss_A Geranylgeranyl transfer 99.1 4.2E-09 1.4E-13 75.7 14.2 109 19-142 38-159 (331)
187 4f3v_A ESX-1 secretion system 99.1 1.5E-09 5.2E-14 76.2 11.6 129 11-156 103-236 (282)
188 3dss_A Geranylgeranyl transfer 99.1 2.5E-08 8.6E-13 71.7 17.8 100 26-140 90-192 (331)
189 3qou_A Protein YBBN; thioredox 99.1 1.3E-09 4.3E-14 76.8 10.4 112 10-121 151-283 (287)
190 1hz4_A MALT regulatory protein 99.1 6.2E-09 2.1E-13 75.2 13.6 130 7-146 11-154 (373)
191 2kat_A Uncharacterized protein 99.0 2.3E-09 7.9E-14 65.0 9.1 71 76-146 2-72 (115)
192 2ooe_A Cleavage stimulation fa 99.0 8.9E-09 3E-13 78.1 13.7 109 11-134 273-397 (530)
193 1nzn_A CGI-135 protein, fissio 99.0 2.9E-08 9.8E-13 61.2 12.9 84 59-142 35-123 (126)
194 3q7a_A Farnesyltransferase alp 99.0 1.8E-08 6.1E-13 72.9 13.0 116 11-141 89-215 (349)
195 2xm6_A Protein corresponding t 98.9 1.4E-08 4.9E-13 76.2 11.9 78 59-138 363-451 (490)
196 3n71_A Histone lysine methyltr 98.9 8.2E-09 2.8E-13 78.0 10.4 114 7-127 348-469 (490)
197 1klx_A Cysteine rich protein B 98.9 2.7E-08 9.1E-13 62.6 11.2 89 16-123 31-127 (138)
198 3e4b_A ALGK; tetratricopeptide 98.8 1.5E-07 5.2E-12 70.3 13.9 106 12-137 178-293 (452)
199 4b4t_Q 26S proteasome regulato 98.8 4.9E-08 1.7E-12 71.7 10.9 118 7-124 52-206 (434)
200 4b4t_Q 26S proteasome regulato 98.8 2E-07 6.9E-12 68.4 13.5 86 60-145 96-193 (434)
201 2xm6_A Protein corresponding t 98.8 4.4E-07 1.5E-11 68.2 15.3 107 10-137 39-157 (490)
202 1xi4_A Clathrin heavy chain; a 98.8 1.7E-07 5.7E-12 77.9 13.6 106 12-140 1197-1327(1630)
203 1b89_A Protein (clathrin heavy 98.8 8.2E-08 2.8E-12 71.3 10.7 104 12-140 124-254 (449)
204 3o48_A Mitochondria fission 1 98.8 3.2E-07 1.1E-11 56.8 11.4 84 59-142 40-127 (134)
205 3e4b_A ALGK; tetratricopeptide 98.7 1.7E-07 5.7E-12 70.0 11.9 101 14-138 217-329 (452)
206 3u64_A Protein TP_0956; tetrat 98.7 1.5E-07 5E-12 66.0 10.7 89 25-126 178-273 (301)
207 3ly7_A Transcriptional activat 98.7 8.8E-07 3E-11 64.3 14.6 119 13-133 199-349 (372)
208 1klx_A Cysteine rich protein B 98.7 4.5E-07 1.5E-11 56.9 11.8 94 23-139 8-105 (138)
209 1y8m_A FIS1; mitochondria, unk 98.7 6E-07 2E-11 56.2 10.9 84 59-142 39-126 (144)
210 3mv2_B Coatomer subunit epsilo 98.7 8.4E-07 2.9E-11 63.1 13.2 122 13-148 103-232 (310)
211 1pc2_A Mitochondria fission pr 98.6 4.7E-07 1.6E-11 57.7 9.7 79 10-102 32-114 (152)
212 3mv2_B Coatomer subunit epsilo 98.6 5.9E-07 2E-11 63.9 11.1 103 12-132 178-292 (310)
213 3bee_A Putative YFRE protein; 98.5 1.6E-06 5.5E-11 50.8 9.0 70 10-94 6-78 (93)
214 1xi4_A Clathrin heavy chain; a 98.5 2.4E-06 8.3E-11 71.2 12.3 93 7-119 1102-1221(1630)
215 3ffl_A Anaphase-promoting comp 98.4 9.2E-06 3.2E-10 52.2 12.1 116 13-136 23-164 (167)
216 3qwp_A SET and MYND domain-con 98.4 3.5E-06 1.2E-10 62.7 9.9 90 7-104 326-424 (429)
217 3qww_A SET and MYND domain-con 98.3 3.7E-06 1.3E-10 62.6 9.0 82 7-95 337-423 (433)
218 1b89_A Protein (clathrin heavy 98.2 1E-06 3.5E-11 65.5 3.7 66 60-138 123-188 (449)
219 2ff4_A Probable regulatory pro 98.1 0.0002 6.9E-09 52.5 14.5 112 10-121 115-233 (388)
220 1nzn_A CGI-135 protein, fissio 98.1 4E-05 1.4E-09 47.2 8.8 78 11-101 36-116 (126)
221 4e6h_A MRNA 3'-END-processing 98.0 0.00055 1.9E-08 53.8 16.7 141 14-156 382-532 (679)
222 3o48_A Mitochondria fission 1 97.9 0.00039 1.3E-08 43.0 11.0 77 11-101 41-120 (134)
223 1y8m_A FIS1; mitochondria, unk 97.9 0.00039 1.3E-08 43.6 10.8 76 11-100 40-118 (144)
224 3ly7_A Transcriptional activat 97.8 0.00017 5.9E-09 52.4 9.8 67 12-94 279-345 (372)
225 4e6h_A MRNA 3'-END-processing 97.8 0.00043 1.5E-08 54.4 12.4 116 12-141 436-555 (679)
226 4h7y_A Dual specificity protei 97.8 0.002 6.9E-08 40.8 12.6 95 27-129 36-130 (161)
227 3ffl_A Anaphase-promoting comp 97.8 0.00042 1.4E-08 44.5 9.7 94 9-103 62-165 (167)
228 3u64_A Protein TP_0956; tetrat 97.8 8.3E-05 2.8E-09 52.3 6.9 68 72-139 176-251 (301)
229 4gns_B Protein CSD3, chitin bi 97.5 0.0016 5.6E-08 51.6 12.0 62 59-120 337-398 (754)
230 2uy1_A Cleavage stimulation fa 97.4 0.014 4.8E-07 44.1 15.0 125 13-139 216-366 (493)
231 3txn_A 26S proteasome regulato 97.2 0.012 4.1E-07 43.3 12.5 100 14-122 103-210 (394)
232 4b4t_R RPN7, 26S proteasome re 97.1 0.0086 2.9E-07 44.5 11.2 100 13-124 134-239 (429)
233 1ya0_A SMG-7 transcript varian 96.9 0.017 5.7E-07 43.8 11.2 80 60-139 153-232 (497)
234 2uy1_A Cleavage stimulation fa 96.8 0.099 3.4E-06 39.5 15.2 108 14-141 290-398 (493)
235 4b4t_P 26S proteasome regulato 96.8 0.094 3.2E-06 39.1 14.2 105 9-122 136-247 (445)
236 3mv2_A Coatomer subunit alpha; 96.7 0.068 2.3E-06 38.0 12.4 119 11-129 115-243 (325)
237 1zbp_A Hypothetical protein VP 96.7 0.036 1.2E-06 38.5 10.8 66 68-133 6-71 (273)
238 4gns_B Protein CSD3, chitin bi 96.7 0.0084 2.9E-07 47.6 8.2 60 11-85 338-397 (754)
239 4g26_A Pentatricopeptide repea 96.5 0.13 4.4E-06 39.0 13.6 98 15-126 110-210 (501)
240 3mkr_B Coatomer subunit alpha; 96.4 0.14 4.9E-06 36.4 13.1 116 12-127 104-232 (320)
241 1ya0_A SMG-7 transcript varian 96.3 0.034 1.2E-06 42.1 9.6 79 12-105 154-232 (497)
242 3kae_A CDC27, possible protein 96.0 0.16 5.4E-06 33.1 12.2 70 61-130 64-151 (242)
243 2v6y_A AAA family ATPase, P60 95.8 0.041 1.4E-06 31.1 6.0 40 1-40 1-41 (83)
244 4g26_A Pentatricopeptide repea 95.8 0.44 1.5E-05 36.1 14.7 103 24-141 84-189 (501)
245 2w2u_A Hypothetical P60 katani 95.4 0.067 2.3E-06 30.2 6.0 40 1-40 9-49 (83)
246 4b4t_S RPN3, 26S proteasome re 95.2 0.084 2.9E-06 40.1 7.4 69 58-126 230-303 (523)
247 3txn_A 26S proteasome regulato 95.1 0.68 2.3E-05 34.0 14.7 127 11-137 20-186 (394)
248 3spa_A Mtrpol, DNA-directed RN 94.3 1.5 5E-05 36.5 12.9 103 12-126 129-236 (1134)
249 3mkq_A Coatomer beta'-subunit; 94.2 0.55 1.9E-05 37.0 10.4 60 60-119 682-762 (814)
250 1zbp_A Hypothetical protein VP 93.9 1 3.6E-05 31.2 11.1 63 18-95 5-67 (273)
251 3mkq_A Coatomer beta'-subunit; 93.9 0.7 2.4E-05 36.4 10.5 106 12-140 683-793 (814)
252 2ff4_A Probable regulatory pro 93.9 1.2 4.1E-05 32.5 11.0 84 63-146 119-224 (388)
253 3mkq_B Coatomer subunit alpha; 93.9 0.81 2.8E-05 29.7 9.8 50 17-86 12-61 (177)
254 2v6x_A Vacuolar protein sortin 93.7 0.15 5E-06 28.8 4.7 40 1-40 4-43 (85)
255 2cpt_A SKD1 protein, vacuolar 93.3 0.34 1.1E-05 29.2 6.0 37 5-41 13-49 (117)
256 4h7y_A Dual specificity protei 93.2 0.71 2.4E-05 29.3 7.5 71 21-107 71-141 (161)
257 4fhn_B Nucleoporin NUP120; pro 93.1 0.81 2.8E-05 38.3 9.8 106 14-119 846-964 (1139)
258 3mkq_B Coatomer subunit alpha; 92.6 0.56 1.9E-05 30.4 6.7 46 70-120 16-61 (177)
259 3t5v_B Nuclear mRNA export pro 92.1 1.7 5.7E-05 32.6 9.6 102 23-126 139-254 (455)
260 4b4t_R RPN7, 26S proteasome re 91.7 0.86 2.9E-05 33.8 7.6 73 61-133 133-210 (429)
261 4b4t_P 26S proteasome regulato 91.3 2.9 9.8E-05 31.1 10.2 74 7-88 174-247 (445)
262 3ax2_A Mitochondrial import re 91.1 1.1 3.8E-05 24.5 5.9 37 97-133 21-57 (73)
263 3re2_A Predicted protein; meni 90.1 3.1 0.00011 30.3 8.8 63 78-140 276-349 (472)
264 4a5x_A MITD1, MIT domain-conta 89.9 1 3.5E-05 25.4 5.2 34 8-41 14-47 (86)
265 2crb_A Nuclear receptor bindin 89.7 0.95 3.2E-05 25.9 4.8 36 7-42 12-47 (97)
266 1wfd_A Hypothetical protein 15 89.4 1 3.5E-05 25.8 5.1 35 7-41 12-46 (93)
267 3u84_A Menin; MLL, JUND, ledgf 88.6 3.7 0.00013 30.5 8.4 63 78-140 298-371 (550)
268 2dl1_A Spartin; SPG20, MIT, st 87.7 3 0.0001 24.9 7.9 70 9-78 21-97 (116)
269 3ax2_A Mitochondrial import re 87.6 1.6 5.6E-05 23.8 4.8 30 13-42 20-49 (73)
270 2rkl_A Vacuolar protein sortin 87.4 1.5 5.1E-05 22.3 4.2 39 2-40 12-50 (53)
271 1qsa_A Protein (soluble lytic 87.2 5.8 0.0002 31.0 9.4 54 68-121 294-347 (618)
272 2o8p_A 14-3-3 domain containin 87.0 4.4 0.00015 27.3 7.6 61 21-88 136-197 (227)
273 1om2_A Protein (mitochondrial 85.9 3.4 0.00011 23.8 5.7 30 13-42 23-52 (95)
274 3spa_A Mtrpol, DNA-directed RN 85.9 15 0.0005 30.9 12.6 70 59-128 127-202 (1134)
275 4b4t_S RPN3, 26S proteasome re 85.6 2.3 7.7E-05 32.5 6.2 73 10-92 231-303 (523)
276 1om2_A Protein (mitochondrial 85.2 2.4 8.2E-05 24.4 4.8 28 99-126 26-53 (95)
277 2cfu_A SDSA1; SDS-hydrolase, l 84.7 4.5 0.00015 31.8 7.7 52 93-144 449-500 (658)
278 3t5x_A PCI domain-containing p 84.2 2.6 8.9E-05 27.8 5.5 54 58-111 13-71 (203)
279 2br9_A 14-3-3E, 14-3-3 protein 83.8 3.8 0.00013 27.8 6.1 54 27-87 147-201 (234)
280 3t5x_A PCI domain-containing p 83.1 4.2 0.00014 26.9 6.1 34 93-126 14-47 (203)
281 2npm_A 14-3-3 domain containin 82.9 5.2 0.00018 27.6 6.6 53 27-87 173-226 (260)
282 2dl1_A Spartin; SPG20, MIT, st 82.7 5 0.00017 24.0 5.6 45 73-125 17-61 (116)
283 4gq4_A Menin; tumor suppressor 81.6 14 0.00048 27.5 9.1 63 78-140 283-356 (489)
284 4gq2_M Nucleoporin NUP120; bet 81.0 19 0.00066 29.6 10.3 26 14-39 844-869 (950)
285 1o9d_A 14-3-3-like protein C; 80.7 5.5 0.00019 27.5 6.1 53 27-86 152-205 (260)
286 2yin_A DOCK2, dedicator of cyt 80.7 9.5 0.00033 28.4 7.8 97 10-106 35-139 (436)
287 1wy6_A Hypothetical protein ST 80.7 8.3 0.00028 24.2 7.3 50 73-122 105-154 (172)
288 3uzd_A 14-3-3 protein gamma; s 80.6 5.8 0.0002 27.2 6.1 54 26-86 147-201 (248)
289 3ubw_A 14-3-3E, 14-3-3 protein 80.6 5.7 0.0002 27.4 6.1 53 27-86 173-226 (261)
290 4gq2_M Nucleoporin NUP120; bet 78.3 5.2 0.00018 32.9 6.2 52 65-120 816-867 (950)
291 2wb7_A PT26-6P; extra chromoso 77.8 21 0.00071 27.2 9.2 41 3-43 422-465 (526)
292 2vkj_A TM1634; membrane protei 77.6 7.6 0.00026 22.1 7.3 34 8-41 51-84 (106)
293 3iqu_A 14-3-3 protein sigma; s 77.2 8.4 0.00029 26.2 6.1 54 26-86 149-203 (236)
294 4a5x_A MITD1, MIT domain-conta 75.8 8.4 0.00029 21.6 7.5 27 96-122 19-45 (86)
295 3t5v_B Nuclear mRNA export pro 74.6 25 0.00084 26.4 9.1 79 9-92 175-254 (455)
296 1qsa_A Protein (soluble lytic 74.2 29 0.001 27.1 11.0 126 16-154 220-345 (618)
297 2oo2_A Hypothetical protein AF 73.7 9.2 0.00032 21.5 4.7 34 4-37 29-62 (86)
298 2pmr_A Uncharacterized protein 73.6 9.1 0.00031 21.6 4.7 32 4-35 33-64 (87)
299 2ijq_A Hypothetical protein; s 73.5 15 0.00051 23.4 6.7 70 11-87 33-103 (161)
300 3efz_A 14-3-3 protein; 14-3-3, 72.7 9.3 0.00032 26.5 5.4 56 26-88 168-226 (268)
301 3lpz_A GET4 (YOR164C homolog); 72.4 24 0.00082 25.3 14.2 109 5-116 30-159 (336)
302 2vkj_A TM1634; membrane protei 71.9 11 0.00039 21.4 7.1 50 91-140 51-103 (106)
303 2cwy_A Hypothetical protein TT 71.0 12 0.00042 21.3 5.0 63 14-87 5-67 (94)
304 4fhn_B Nucleoporin NUP120; pro 70.3 7.1 0.00024 32.7 5.3 51 65-119 818-868 (1139)
305 2crb_A Nuclear receptor bindin 69.2 14 0.00047 21.2 9.6 27 93-119 15-41 (97)
306 2cfu_A SDSA1; SDS-hydrolase, l 69.1 13 0.00044 29.3 6.2 51 61-111 451-501 (658)
307 2ijq_A Hypothetical protein; s 67.2 21 0.00073 22.6 8.2 60 63-122 36-104 (161)
308 2npu_A FKBP12-rapamycin comple 66.6 19 0.00065 21.9 6.3 84 57-140 38-123 (126)
309 3kae_A CDC27, possible protein 63.5 28 0.00097 22.7 13.9 88 63-156 37-142 (242)
310 2xze_A STAM-binding protein; h 63.4 24 0.00082 21.9 5.8 34 7-40 37-70 (146)
311 3eab_A Spastin; spastin, MIT, 61.4 20 0.00068 20.3 5.7 60 10-69 16-82 (89)
312 3myv_A SUSD superfamily protei 60.1 28 0.00096 25.8 6.4 55 26-87 164-218 (454)
313 3lew_A SUSD-like carbohydrate 57.9 43 0.0015 25.2 7.1 59 26-88 174-232 (495)
314 3kez_A Putative sugar binding 57.2 34 0.0012 25.4 6.4 29 59-87 196-224 (461)
315 3snx_A SUSD homolog, putative 56.3 54 0.0019 24.4 7.4 30 59-88 191-220 (460)
316 2ymb_A MITD1, MIT domain-conta 55.7 2.4 8.3E-05 29.2 0.0 37 6-42 19-55 (257)
317 2yhe_A SEC-alkyl sulfatase; hy 60.0 2.5 8.7E-05 33.3 0.0 51 94-144 462-512 (668)
318 2jpu_A ORF C02003 protein; sol 54.4 25 0.00087 21.4 4.4 31 9-39 6-36 (129)
319 2rpa_A Katanin P60 ATPase-cont 54.0 26 0.00088 19.3 7.5 25 97-121 16-40 (78)
320 3hdx_A SUSD homolog, SUSD supe 53.0 58 0.002 24.3 7.1 31 58-88 196-226 (478)
321 3mcx_A SUSD superfamily protei 52.8 38 0.0013 25.3 6.1 56 26-88 176-231 (477)
322 3myv_A SUSD superfamily protei 52.3 55 0.0019 24.3 6.8 47 75-121 164-218 (454)
323 2zan_A Vacuolar protein sortin 51.8 3.1 0.0001 30.9 0.0 38 5-42 6-43 (444)
324 2a9u_A Ubiquitin carboxyl-term 50.9 42 0.0014 20.8 5.1 34 7-40 39-72 (144)
325 1o3u_A Conserved hypothetical 50.3 40 0.0014 20.3 5.3 35 5-39 11-45 (135)
326 3kez_A Putative sugar binding 50.1 60 0.0021 24.1 6.8 47 75-121 170-224 (461)
327 2w2u_A Hypothetical P60 katani 49.9 31 0.0011 19.1 7.6 16 104-119 30-45 (83)
328 3mcx_A SUSD superfamily protei 49.9 68 0.0023 23.9 7.0 48 75-122 176-231 (477)
329 3bu8_A Telomeric repeat-bindin 47.5 62 0.0021 21.8 6.8 33 63-95 118-150 (235)
330 3bu8_A Telomeric repeat-bindin 47.4 40 0.0014 22.7 4.7 63 75-137 88-158 (235)
331 4aez_C MAD3, mitotic spindle c 47.1 62 0.0021 21.7 9.5 48 76-123 131-180 (223)
332 3qnk_A Putative lipoprotein; a 46.6 83 0.0028 23.7 7.1 30 59-88 182-211 (517)
333 2v6y_A AAA family ATPase, P60 46.4 36 0.0012 18.7 7.2 15 112-126 37-51 (83)
334 4abx_A DNA repair protein RECN 46.3 54 0.0019 20.8 5.3 51 75-125 72-122 (175)
335 2yin_A DOCK2, dedicator of cyt 45.8 74 0.0025 23.6 6.6 51 10-75 91-142 (436)
336 2cwy_A Hypothetical protein TT 45.0 41 0.0014 19.1 5.8 56 64-121 6-67 (94)
337 3lew_A SUSD-like carbohydrate 44.9 79 0.0027 23.7 6.7 48 75-122 174-232 (495)
338 2wpv_A GET4, UPF0363 protein Y 44.8 80 0.0027 22.3 11.6 27 91-117 132-158 (312)
339 2qx5_A Nucleoporin NIC96; mRNA 43.7 1.2E+02 0.0041 24.0 9.4 32 94-126 537-570 (661)
340 3r9m_A BRO1 domain-containing 42.6 88 0.003 22.6 6.5 27 93-119 253-279 (376)
341 3jq1_A SUSD superfamily protei 42.3 78 0.0027 23.7 6.4 29 59-87 180-208 (481)
342 1wy6_A Hypothetical protein ST 42.1 63 0.0022 20.3 4.8 31 59-89 125-155 (172)
343 3i4g_A SUSD-like carbohydrate 41.7 1.1E+02 0.0038 23.2 7.1 30 59-88 198-227 (528)
344 2e2a_A Protein (enzyme IIA); h 40.9 46 0.0016 19.4 3.9 32 89-120 16-47 (105)
345 3bqo_A Telomeric repeat-bindin 40.6 78 0.0027 21.0 5.5 34 61-94 119-152 (211)
346 3bqo_A Telomeric repeat-bindin 40.3 23 0.0008 23.4 2.8 36 101-136 125-160 (211)
347 3s6n_M SurviVal motor neuron p 39.7 24 0.00084 16.1 2.0 14 109-122 18-31 (37)
348 1wcr_A PTS system, N, N'-diace 39.4 50 0.0017 19.2 3.9 31 90-120 15-45 (103)
349 2v6x_A Vacuolar protein sortin 39.4 48 0.0016 18.2 7.8 19 103-121 23-41 (85)
350 2wm9_A Dedicator of cytokinesi 39.2 1E+02 0.0035 22.8 6.5 98 9-107 10-135 (428)
351 4a1g_A Mitotic checkpoint seri 37.9 74 0.0025 19.9 9.3 47 77-123 83-131 (152)
352 3lvg_A Clathrin heavy chain 1; 37.3 0.23 7.8E-06 37.9 -7.8 100 14-139 148-275 (624)
353 2wvi_A Mitotic checkpoint seri 36.7 80 0.0028 20.0 13.3 82 30-123 43-126 (164)
354 3k1s_A PTS system, cellobiose- 35.8 61 0.0021 19.0 3.9 30 90-119 19-48 (109)
355 2yhe_A SEC-alkyl sulfatase; hy 39.4 9 0.00031 30.2 0.0 51 62-112 464-514 (668)
356 3l8r_A PTCA, putative PTS syst 32.6 82 0.0028 18.9 4.2 32 88-119 32-63 (120)
357 3pmr_A Amyloid-like protein 1; 32.5 1.1E+02 0.0038 20.4 6.9 71 72-142 105-182 (219)
358 3esl_A Checkpoint serine/threo 32.4 1.1E+02 0.0037 20.2 13.7 86 31-123 58-145 (202)
359 3ph0_C ASCG; type III secretio 30.6 60 0.002 16.7 6.0 51 62-113 9-60 (61)
360 3hdx_A SUSD homolog, SUSD supe 30.4 1.6E+02 0.0056 21.9 6.4 30 93-122 197-226 (478)
361 3re2_A Predicted protein; meni 30.1 89 0.0031 23.0 4.6 25 62-86 299-323 (472)
362 2cpt_A SKD1 protein, vacuolar 29.4 91 0.0031 18.4 9.5 17 112-128 44-60 (117)
363 3qnk_A Putative lipoprotein; a 29.2 1.8E+02 0.0063 21.9 6.8 48 75-122 153-211 (517)
364 3jys_A SUSD superfamily protei 28.1 1.8E+02 0.0063 21.8 6.4 17 71-87 206-222 (499)
365 3snx_A SUSD homolog, putative 28.0 1.9E+02 0.0063 21.5 6.8 30 93-122 191-220 (460)
366 3jq1_A SUSD superfamily protei 27.2 1.3E+02 0.0045 22.5 5.4 47 75-121 154-208 (481)
367 3l22_A SUSD superfamily protei 27.1 47 0.0016 24.5 3.0 28 59-86 201-228 (441)
368 3o10_A Sacsin; all-helical dom 26.2 1.1E+02 0.0039 18.5 5.0 15 24-38 4-18 (141)
369 1dpj_B IA3, proteinase inhibit 25.1 51 0.0017 14.1 4.3 25 135-159 9-33 (33)
370 3u84_A Menin; MLL, JUND, ledgf 25.0 1.2E+02 0.0041 22.8 4.6 24 62-85 321-344 (550)
371 3rau_A Tyrosine-protein phosph 24.9 1.8E+02 0.0062 20.9 5.6 29 93-121 252-280 (363)
372 1wol_A ST0689, 122AA long cons 24.4 1.1E+02 0.0038 17.7 5.6 35 5-39 6-40 (122)
373 1ufb_A TT1696 protein; structu 24.1 1.1E+02 0.0039 17.8 5.4 35 5-39 6-40 (127)
374 2ket_A Cathelicidin-6; antimic 24.0 49 0.0017 13.5 1.6 11 148-158 7-17 (27)
375 2hsb_A Hypothetical UPF0332 pr 23.5 1.2E+02 0.004 17.6 5.0 33 5-37 7-39 (126)
376 4gq4_A Menin; tumor suppressor 22.8 1.4E+02 0.0048 22.4 4.6 26 61-86 305-330 (489)
377 1sf9_A YFHH hypothetical prote 22.3 1.4E+02 0.0047 18.0 5.6 36 1-36 32-67 (128)
378 2wm9_A Dedicator of cytokinesi 21.7 89 0.003 23.1 3.5 47 15-77 92-139 (428)
379 3ckc_A SUSD; TPR repeat, carbo 21.4 2.6E+02 0.0088 20.9 6.6 27 61-87 199-231 (527)
380 1wfd_A Hypothetical protein 15 21.2 1.2E+02 0.0041 17.0 9.5 16 112-127 41-56 (93)
381 2yxy_A Hypothetical conserved 21.2 1.4E+02 0.0048 17.7 5.4 37 1-37 14-50 (115)
382 4gof_A Small glutamine-rich te 20.9 93 0.0032 15.5 2.6 17 110-126 31-47 (52)
383 3i4g_A SUSD-like carbohydrate 20.8 2.8E+02 0.0095 21.0 6.6 47 75-121 167-226 (528)
384 3ihv_A SUSD homolog; NP_813570 20.3 2.8E+02 0.0096 20.9 6.4 29 60-88 197-233 (535)
No 1
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.95 E-value=3.6e-27 Score=153.65 Aligned_cols=154 Identities=25% Similarity=0.349 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC---CCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH---SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETS 79 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 79 (159)
+++++..+..++..|+.++..|+|++|+..|.+++.+.+..+ ..+++.+....+....++.++|.|+..+|+|++|+
T Consensus 4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 567888999999999999999999999999999999865422 22234556667788889999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-VVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
.+|++++.++|+++.+++++|.++..+|++++|+.+|++++.++|+++ .+...+..+...+.+..+.+++.|++||+
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~ 161 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998 88999999999999999999999999996
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.93 E-value=2.4e-24 Score=135.18 Aligned_cols=114 Identities=26% Similarity=0.391 Sum_probs=108.0
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+.++.++.+|+.+++.|+|++|+..|.+++.+.|.+ ..++.++|.++..+|++++|+.+|++++.
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 75 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---------------AILYSNRAACLTKLMEFQRALDDCDTCIR 75 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHhhHHHhhccHHHHHHHHHHHHH
Confidence 468899999999999999999999999999998776 45599999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
++|+++.+++++|.++..+|++++|+..|++++.++|+++.++..++.|
T Consensus 76 ~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 76 LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888776
No 3
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.93 E-value=1.1e-23 Score=157.77 Aligned_cols=157 Identities=32% Similarity=0.578 Sum_probs=141.2
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
+.++....+..++..|+.++..|+|.+|+..|.+++.+.|.++...++......++...+++++|.|+..+|+|++|+.+
T Consensus 260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34667788999999999999999999999999999999998877777777788888899999999999999999999999
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+...+++..+.++..|++||+++
T Consensus 340 ~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~ 416 (457)
T 1kt0_A 340 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416 (457)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.93 E-value=2.9e-23 Score=149.99 Aligned_cols=156 Identities=33% Similarity=0.572 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
.+.....+..+...|+.++..|+|++|+..|.+++.+.|.++....+......++...++.++|.|+..+|+|++|+.+|
T Consensus 140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566788999999999999999999999999999999988776677777888888999999999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSKM 158 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (159)
++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+...+++..+.++..|++||+++
T Consensus 220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999865
No 5
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.92 E-value=8.2e-25 Score=141.16 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=123.7
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 80 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 80 (159)
|.|-.....+..+...|+.++..|+|++|+..|.++|.+.|..+.... ....+....+|.|+|.++..+|+|++|+.
T Consensus 2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a---~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhh---hhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 556667788999999999999999999999999999999998554221 11223345589999999999999999999
Q ss_pred HHHHHhhc-------CCccHHHH----HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 81 LCTKVLEL-------EPLNVKAL----YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 81 ~~~~al~~-------~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+|+++|.+ +|+++.+| +++|.++..+|++++|+.+|++++.++|++..+...+..++..+....+
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~ 154 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIA 154 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999 9999999999999999999999999999999998888888877766544
No 6
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.92 E-value=4.2e-23 Score=138.36 Aligned_cols=157 Identities=29% Similarity=0.425 Sum_probs=131.2
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHHHHHhhHHHHHhhhhCHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETS 79 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 79 (159)
|+.+++...+..+...|..++..|+|++|+..|.+++.+.|.++..... .......+...++.++|.++..+|++++|+
T Consensus 29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 108 (198)
T 2fbn_A 29 YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI 108 (198)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 5778889999999999999999999999999999999998876644332 222234445678999999999999999999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031461 80 SLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157 (159)
Q Consensus 80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
.++++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...+..+...+++..+.++..|+++|+.
T Consensus 109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998899999874
No 7
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.89 E-value=5e-22 Score=145.28 Aligned_cols=155 Identities=30% Similarity=0.501 Sum_probs=133.8
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccC-CCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461 2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHH-SFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 80 (159)
Q Consensus 2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 80 (159)
+.++.+..+..+...|+.++..|+|++|+..|.+++.+.+..+ ...........+....++.++|.++..+|+|++|+.
T Consensus 215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 294 (370)
T 1ihg_A 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD 294 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4677888999999999999999999999999999999765432 111122233456667889999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
++++++.++|+++.+++++|.+|..+|++++|+..|++++.++|+++.++..+..+...+++..+.++..|++||+
T Consensus 295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~ 370 (370)
T 1ihg_A 295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370 (370)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988898884
No 8
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.87 E-value=8e-22 Score=142.59 Aligned_cols=157 Identities=29% Similarity=0.467 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--FTDDEKHQANGLRLSCYLNNAACKLKLEDYSET 78 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 78 (159)
|+.++++..+..++..|+.++..|+|++|+..|.+++.+.|.+.. ...........+...+++++|.|+..+|+|++|
T Consensus 170 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A 249 (338)
T 2if4_A 170 MTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA 249 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 467788999999999999999999999999999999999776531 111122223444456899999999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLSK 157 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
+.+|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|+++.++..+..+........+..+..|.++|+.
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999887777777778889888864
No 9
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=7.3e-21 Score=118.59 Aligned_cols=117 Identities=25% Similarity=0.349 Sum_probs=109.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.+...|..++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEK 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999997765 455999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~ 140 (159)
+|+++.+++.+|.++..+|++++|+..|++++.++ |+++.+...+..+...+
T Consensus 68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999 99999999888887543
No 10
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.87 E-value=8.9e-21 Score=118.93 Aligned_cols=113 Identities=23% Similarity=0.296 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.+.+..++++|+.+++.|+|++|+.+|.+++++.|.+ ..++.++|.++..+|+|++|+.++++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---------------~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---------------ITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567889999999999999999999999999997765 4569999999999999999999999999
Q ss_pred hcCCcc-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 87 ELEPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 87 ~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
.++|++ ..+++++|.++...|++++|+.+|++++...|+ +.+...+..
T Consensus 70 ~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 998865 458999999999999999999999999999885 444444433
No 11
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.85 E-value=3.9e-20 Score=119.44 Aligned_cols=104 Identities=11% Similarity=0.111 Sum_probs=98.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++.+...|..++..|+|++|+..|.+++.+.|.+ ..+|.++|.++..+|+|++|+.+|++++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~---------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN---------------VDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 46788999999999999999999999999998876 345999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
+|+++.+++++|.+|..+|++++|+..|++++.+.|+.+
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999875
No 12
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.85 E-value=9.8e-20 Score=118.47 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=110.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..++..|+|++|+..|.+++.+.|.+ ..++.++|.++..+|++++|+.++++++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al 72 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---------------PIYLSNRAAAYSASGQHEKAAEDAELAT 72 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4568889999999999999999999999999997765 4569999999999999999999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH--HHHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV--VKLVYMELKDKQREYA 144 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~ 144 (159)
.++|+++.+++.+|.++..+|++++|+.+|++++.++|++.. ....+..++.++.+..
T Consensus 73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999977 5666666666665543
No 13
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.85 E-value=5.5e-20 Score=117.18 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=111.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
....+...|..++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---------------ARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999997765 345899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+|+++.+++.+|.++...|++++|+..|++++.+.|+++........+...+....+.
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988887777777766665443
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.84 E-value=5.4e-20 Score=118.29 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=108.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.+|++++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---------------SRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999998776 345899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
+|+++.+++.+|.++...|++++|+..|++++.+.|+++........+...+...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887766666666555543
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=1.1e-19 Score=117.04 Aligned_cols=115 Identities=15% Similarity=0.057 Sum_probs=99.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.....+..|..++..|+|++|+.+|.+++++.|.+ ..++.++|.++..+|++++|+.++++++.+
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD---------------PKAHRFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 34556778999999999999999999999997776 455899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHH-HHHHHhcCCCcHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEAD-IKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
+|+++.+++.+|.++...|++++|... +++++.++|+++.+......+..
T Consensus 95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999887665 58999999999988887777654
No 16
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=2e-18 Score=116.58 Aligned_cols=133 Identities=11% Similarity=0.072 Sum_probs=108.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH-HHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD-EKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
++.+...|..++..|+|++|+..|.+++...|.++..-.. ...........+..++|.++..+|++++|+.++++++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999998865321000 000000011112233999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+....+.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999988755544
No 17
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.82 E-value=6.1e-20 Score=118.20 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=102.4
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
+|.++...|+++.|+..|.+++...|..+.. ++++|.+|..+|+|++|+.++++++.++|+++.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a 67 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA 67 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 6888889999999999999999987766443 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
++.+|.+|...|++++|+..|++++.++|+++.++..++.+....++..
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 9999999999999999999999999999999999999999987776543
No 18
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.81 E-value=1.6e-18 Score=108.98 Aligned_cols=121 Identities=26% Similarity=0.344 Sum_probs=110.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999997765 455999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN-----NRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~~ 144 (159)
+|+++.+++.+|.++...|++++|+..|++++.++|+ +..+...+..+........
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~ 133 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 133 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 7888888888876655443
No 19
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.80 E-value=2.2e-18 Score=135.23 Aligned_cols=131 Identities=14% Similarity=0.112 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++.+..+|+.+...|++++|+.+|++++++.|.+ ..++.++|.++..+|++++|+.+|+++++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~---------------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~ 71 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF---------------AAAHSNLASVLQQQGKLQEALMHYKEAIR 71 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 347888999999999999999999999999997765 34578888888888888888888888888
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
++|+++.+++++|.++..+|++++|+..|++++.++|++..++..++.+...+++..+... .|.+.
T Consensus 72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~A 137 (723)
T 4gyw_A 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA-SYRTA 137 (723)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 8888888888888888888888888888888888888888888888888777776655533 44443
No 20
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.80 E-value=4e-17 Score=105.33 Aligned_cols=120 Identities=23% Similarity=0.350 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
.......+..+...|..++..|+++.|+..|.+++...|.+ ..++.++|.++..+|++++|+.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~ 70 (166)
T 1a17_A 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDA 70 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45667889999999999999999999999999999987664 455899999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
++++.++|.++.+++.+|.++...|++++|+..|++++.+.|.+..+...+..+.
T Consensus 71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 125 (166)
T 1a17_A 71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 125 (166)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998886666663
No 21
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.80 E-value=9.6e-18 Score=103.80 Aligned_cols=125 Identities=27% Similarity=0.300 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 3 THEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
.+.....+..+...|..++..|+++.|+..|.+++...|.+ ..++.++|.++...|++++|+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~ 69 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---------------AVYFCNRAAAYSKLGNYAGAVQDC 69 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhhchHHHHHHH
Confidence 34456678899999999999999999999999999987654 345899999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
++++..+|.++.+++.+|.++...|++++|+..|++++.+.|+++.+...++.+...+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 70 ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999888888766543
No 22
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.80 E-value=7.4e-18 Score=102.63 Aligned_cols=114 Identities=23% Similarity=0.226 Sum_probs=106.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---------------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999987764 345899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
+|.++.+++.+|.++...|++++|...|++++..+|+++.+...+..+.
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888887765
No 23
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=6.5e-18 Score=114.80 Aligned_cols=120 Identities=20% Similarity=0.111 Sum_probs=73.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+..+++++.++|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQD---------------PEALYWLARTQLKLGLVNPALENGKTLVARTP 70 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666777777777777777777777765554 23355666666666666666666666666666
Q ss_pred ccHHHHHHHHHHHHhh-----------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKT-----------SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
+++.+++.+|.++... |++++|+..|++++.++|+++.++..++.+....++.++
T Consensus 71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 6666666666666666 666666666666666666665555555555555444433
No 24
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=2.5e-17 Score=112.13 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=110.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhc-ccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE-FHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+.+...|..++..|+|++|+..|.+++...| .+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 72 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD---------------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN 72 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC---------------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999999976 33 3457789999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR-------VVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
|.++.+++.+|.++...|++++|+..|++++.++|+++ .++..++.+....++..+... .|.++
T Consensus 73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~a 143 (228)
T 4i17_A 73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHA 143 (228)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999 446666666666555544432 44443
No 25
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.78 E-value=1.1e-17 Score=104.10 Aligned_cols=117 Identities=9% Similarity=0.072 Sum_probs=104.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
+.+...|..++..|+|++|+..|.+++...|.++.. ..++..+|.++...|++++|+.++++++..+|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYT------------PNALYWLGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356788999999999999999999999998765421 35688999999999999999999999999999
Q ss_pred cc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 91 LN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 91 ~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
++ +.+++.+|.++...|++++|+..|++++...|+++.+......+...
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999998887776666543
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.78 E-value=5.6e-18 Score=105.24 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=90.1
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.....|..++..|++++|+..|.+++...|.+ ..++..+|.++..+|++++|+..+++++.++|+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER---------------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999999998776 455899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
++.+++.+|.++...|++++|+..|++++.++|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999999998753
No 27
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-17 Score=103.22 Aligned_cols=117 Identities=27% Similarity=0.322 Sum_probs=107.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++...|++++|+.++++++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---------------AKLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999986654 455899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+|.++.+++.+|.++...|++++|+..|++++.++|.+..+...++.+....
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999888888876543
No 28
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.77 E-value=3.7e-17 Score=101.21 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=107.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|+++.|+.+|.+++...|.+ ..++.++|.++..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---------------MTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 56788999999999999999999999999987654 455899999999999999999999999999
Q ss_pred CCcc-------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 89 EPLN-------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 89 ~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.|.+ +.+++.+|.++...|++++|+..|++++...| ++.+...+..+...+++.
T Consensus 68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 8877 89999999999999999999999999999999 688888888887776654
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-17 Score=105.11 Aligned_cols=117 Identities=34% Similarity=0.508 Sum_probs=106.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|+|++|+..|.+++...|.+ +....++.++|.++..+|++++|+.++++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 36778899999999999999999999999986653 123566899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
+|.++.+++.+|.++...|++++|+..|++++.++|+++.+...+..+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888877764
No 30
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.76 E-value=1.3e-17 Score=130.93 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=112.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+..+|..+...|++++|+..|++++++.|.+ ..++.++|.++..+|++++|+.+|+++++++
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~---------------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~ 107 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF---------------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5668889999999999999999999999997765 4569999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+...+++..+.
T Consensus 108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999999999999999999999999999999999999998777655443
No 31
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=8e-17 Score=106.11 Aligned_cols=146 Identities=12% Similarity=0.064 Sum_probs=113.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------H------HHHHHHHHHHHHHhhHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------D------EKHQANGLRLSCYLNNAACK 69 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~------~~~~~~~~~~~~~~~~a~~~ 69 (159)
.+..+...|..++..|+|++|+..|++++++.|.++..-. . ......+-...++..+|.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 3567889999999999999999999999999876532100 0 00011111234566777888
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAE 149 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (159)
...++++.|...+.+++.++|.++.++..+|.++...|++++|+..|++++.++|+++.++..++.+...+++..+...
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~- 162 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK- 162 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-
Confidence 8888888888888888888888899999999999999999999999999999999999999999999988888766543
Q ss_pred HHHHHh
Q 031461 150 IFGTML 155 (159)
Q Consensus 150 ~~~~~~ 155 (159)
.|.+..
T Consensus 163 ~~~~al 168 (184)
T 3vtx_A 163 YFKKAL 168 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=6.1e-17 Score=109.95 Aligned_cols=128 Identities=16% Similarity=0.092 Sum_probs=103.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-----------hCHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----------EDYSET 78 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A 78 (159)
+..+...|..+...|++++|+..|.+++.+.|.+ ..++.++|.++..+ |++++|
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A 103 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRY---------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence 4567889999999999999999999999998765 34477888888888 888888
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+..+++++.++|+++.+++.+|.++...|++++|+..|++++.++ +++.++..++.+....++..+... .|.++
T Consensus 104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~a 177 (217)
T 2pl2_A 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKA 177 (217)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 888888888888888888888888888888888888888888888 778888888888777776655432 44443
No 33
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.74 E-value=4.5e-17 Score=119.56 Aligned_cols=78 Identities=14% Similarity=0.040 Sum_probs=40.7
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|.++|.++..+|++++|+.+|+++|.++|++..+|+++|.++..+|++++|+.+|++++.++|++..++..++.+...
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555555555555555555555554444
No 34
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.73 E-value=7.2e-16 Score=94.46 Aligned_cols=115 Identities=30% Similarity=0.374 Sum_probs=105.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..++..|++++|+..|.+++...|.+ ..++..+|.++...|++++|+.++++++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999999986643 3458899999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|.++.+++.+|.++...|++++|+..|++++...|+++.+...++.+...
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998888877644
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=7.1e-16 Score=101.51 Aligned_cols=119 Identities=13% Similarity=0.030 Sum_probs=94.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------------HHHHHHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------------DEKHQANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~ 70 (159)
+..+...|..++..|++++|+..+.+++...+..+.... .......+....++..+|.++.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 455677788888888888888888888877655321110 0001112223456889999999
Q ss_pred hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.+|++++|+.+++++++++|.++.+++.+|.+|..+|++++|+..|+++++++|+++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999999999999999999998753
No 36
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.2e-16 Score=117.23 Aligned_cols=123 Identities=14% Similarity=0.006 Sum_probs=111.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC-HHHHHHHHHHHhh
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED-YSETSSLCTKVLE 87 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~ 87 (159)
.+..+...|..+...|++++|+..|.+++.+.|.+ ..+|.++|.++..+|+ +++|+.++++++.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~---------------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN---------------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC---------------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 46778889999999999999999999999997765 4569999999999996 9999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
++|++..+|+.+|.++..+|++++|+.+|++++.++|++..++..++.+...+++..+.
T Consensus 161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999999999999999999999999999999999998887766543
No 37
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=1.1e-15 Score=103.88 Aligned_cols=118 Identities=17% Similarity=0.101 Sum_probs=108.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 345668999999999999999999999987764 45699999999999999999999999999999
Q ss_pred ccH-------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHH
Q 031461 91 LNV-------KALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY 143 (159)
Q Consensus 91 ~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~ 143 (159)
+++ .+++.+|.++...|++++|+..|++++.++|+ ++.++..++.+....+..
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 998 77999999999999999999999999999999 889999999988776665
No 38
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.71 E-value=4.1e-17 Score=100.44 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=86.4
Q ss_pred HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 031461 22 RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQ 101 (159)
Q Consensus 22 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 101 (159)
..|++++|+..|.+++...+.+|. ...++.++|.++..+|++++|+.++++++.++|+++.+++.+|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 69 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 468999999999999998321111 25669999999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 102 AHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 102 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
++...|++++|+..|++++...|+++.+......+
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999998876554444
No 39
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.71 E-value=2.7e-17 Score=106.05 Aligned_cols=96 Identities=9% Similarity=-0.001 Sum_probs=88.7
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..+++++|.++...|++++|+.+|++++.++|.++.+|+.+|.++...|++++|+..|++++.++|+++.++..++.+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031461 139 KQREYAKYQAEIFGTML 155 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (159)
.+++..+... .|.++.
T Consensus 116 ~lg~~~eA~~-~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKE-CFELVI 131 (151)
T ss_dssp HTTCHHHHHH-HHHHHH
T ss_pred HcCCHHHHHH-HHHHHH
Confidence 9988877644 565554
No 40
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.71 E-value=1.5e-16 Score=102.46 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=92.2
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH----------HHHHHHHHHHhhcCC
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY----------SETSSLCTKVLELEP 90 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~~ 90 (159)
-+.++|++|+..|.+++.+.|.+ ..++.++|.++..++++ ++|+..|+++|.++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~---------------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD---------------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence 35678999999999999998876 44589999999999875 599999999999999
Q ss_pred ccHHHHHHHHHHHHhhC-----------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTS-----------ELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
++..+++++|.+|..+| ++++|+.+|++|+.++|++......+..+...
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka 137 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 137 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence 99999999999999885 89999999999999999998877777665543
No 41
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.71 E-value=5e-16 Score=109.44 Aligned_cols=102 Identities=28% Similarity=0.416 Sum_probs=96.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|+.++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALCYLKMQQPEQALADCRRALELD 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5678899999999999999999999999997765 4559999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
|+++.+++.+|.++..+|++++|+..|++++.++|++
T Consensus 69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999876
No 42
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.71 E-value=1.5e-15 Score=105.36 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=99.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh--------hhCHHHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK--------LEDYSETSSL 81 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~~A~~~ 81 (159)
...+...|..++..|+|++|+..|.+++...|.++.. ..+++.+|.++.. +|++++|+..
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~ 119 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEA 119 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh------------HHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 4556677777777777777777777777776655432 4668999999999 9999999999
Q ss_pred HHHHhhcCCccHHHH-----------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHH
Q 031461 82 CTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYMELKDKQ 140 (159)
Q Consensus 82 ~~~al~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~ 140 (159)
+++++..+|+++.+. +.+|.+|...|++++|+..|++++...|+ .+.+...++.+...+
T Consensus 120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999999986666 88999999999999999999999999998 466888888888766
No 43
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.70 E-value=9.4e-16 Score=102.98 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=110.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|+|++|+..|.+++. + + ..++.++|.++..+|++++|+.++++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------------SRICFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356688999999999999999999999852 1 1 356999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR----------------VVKLVYMELKDKQREYAKYQAEIFG 152 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (159)
+|.++.+++.+|.++...|++++|+..|++++.+.|.+. .++..++.+...+++..+... .|.
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~ 145 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLA 145 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HHH
Confidence 999999999999999999999999999999999888876 889999999888777655533 444
Q ss_pred HH
Q 031461 153 TM 154 (159)
Q Consensus 153 ~~ 154 (159)
++
T Consensus 146 ~a 147 (213)
T 1hh8_A 146 LA 147 (213)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 44
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=1.8e-15 Score=102.10 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=91.8
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
..|..++..|++++|+..|.+++.+.|.+ ..++.++|.++..+|++++|+.+|++++.++|+++.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~ 123 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 39999999999999999999999998776 455999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-----------------------------------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 95 ALYRRSQAHLKT-----------------------------------SELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 95 ~~~~~~~~~~~~-----------------------------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
+++.+|.+|+.. |++++|+.+|++++.+.|++ .+...+..+.
T Consensus 124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~ 200 (208)
T 3urz_A 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL 200 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence 988888776433 46889999999999999974 3444455543
No 45
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.69 E-value=6.8e-16 Score=107.12 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=98.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.+...|..++..|+|++|+..|.+++...|.++.. ..+++.+|.++..+|+|++|+..+++++.+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWA------------ADAQFYLARAYYQNKEYLLAASEYERFIQIY 82 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence 5778999999999999999999999999998765432 5669999999999999999999999999998
Q ss_pred Ccc---HHHHHHHHHHHHh--------hCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461 90 PLN---VKALYRRSQAHLK--------TSELEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 90 ~~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~ 130 (159)
|++ +.+++.+|.++.. .|++++|+..|++++...|+++.+.
T Consensus 83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 854 7789999999999 9999999999999999999987666
No 46
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.69 E-value=3e-15 Score=98.04 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=102.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH-HhhhhCH--HHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-KLKLEDY--SETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al 86 (159)
...+...|..++..|++++|+.+|.+++.+.|.+ ..++.++|.+ +...|++ ++|+.++++++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al 108 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---------------AELYAALATVLYYQASQHMTAQTRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 4668889999999999999999999999998765 3458899999 8899999 99999999999
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
.++|+++.+++.+|.++...|++++|+..|++++.++|+++.....+..+..
T Consensus 109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998766655555543
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.69 E-value=1.7e-15 Score=108.23 Aligned_cols=122 Identities=24% Similarity=0.282 Sum_probs=109.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
......|..++..|++++|+..|.+++...|.++. ....++..+|.++...|++++|+.++++++.++|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE-----------YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-----------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 34556799999999999999999999999776432 2345678899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
+++.+++.+|.++...|++++|+..|++++.++|+++.+...+..+...+++.
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 356 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998877764
No 48
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.68 E-value=2.9e-16 Score=118.29 Aligned_cols=118 Identities=24% Similarity=0.340 Sum_probs=108.3
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++.+...|..++..|+|++|+..|.++++..|.+ ..++.++|.++..+|++++|+.+++++++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---------------AIYYGNRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456778889999999999999999999999997765 45699999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
++|+++.+++++|.+|..+|++++|+..|++++.++|++..++..++.+....
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~ 121 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888874333
No 49
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=1.1e-15 Score=95.56 Aligned_cols=96 Identities=18% Similarity=0.144 Sum_probs=88.3
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+.++|..++..|+|++|+.+|++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++..++..++.+..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 031461 139 KQREYAKYQAEIFGTML 155 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (159)
.+++..+... .|.++.
T Consensus 93 ~~~~~~~A~~-~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQR-AYEDAL 108 (126)
T ss_dssp HTTCHHHHHH-HHHHHH
T ss_pred HCCCHHHHHH-HHHHHH
Confidence 9888866543 555543
No 50
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.67 E-value=6.6e-15 Score=91.05 Aligned_cols=128 Identities=24% Similarity=0.303 Sum_probs=111.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
+.+...|..++..|++++|+..|.+++...|.+ ..++..+|.++...|++++|+..+++++...|
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 356778999999999999999999999986543 34588899999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.++.+++.+|.++...|++++|+..+.+++...|.+..+...++.+....++..+... .+..+
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~ 129 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999998888888877666654432 44443
No 51
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.67 E-value=5.8e-16 Score=93.35 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=94.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~ 71 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE---------------SKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 456778999999999999999999999997654 34589999999999999999999999999999
Q ss_pred c--cHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCcH
Q 031461 91 L--NVKALYRRSQAHLKT-SELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 91 ~--~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~ 127 (159)
. ++.+++.+|.++... |++++|+.++.+++...|.++
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9 999999999999999 999999999999999999764
No 52
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.5e-15 Score=102.28 Aligned_cols=112 Identities=26% Similarity=0.353 Sum_probs=84.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4556677777888888888888888888776554 3447778888888888888888888888888
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNRVVKLVYMEL 136 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~~~ 136 (159)
|+++.+++.+|.++...|++++|+..|++++.+. |++..+...+..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 8888888888888888888888888888888777 7777766665543
No 53
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=1.5e-14 Score=94.27 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=91.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++...|++++|..++++++...|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 107 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDN---------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 445566666677777777777777777664433 34577788888888888888888888888888
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.++.+++.+|.++...|++++|+..+++++...|.++.+...++.+....++..+.
T Consensus 108 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888888888888888888888888888777777766655443
No 54
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.1e-15 Score=100.42 Aligned_cols=144 Identities=16% Similarity=0.151 Sum_probs=117.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-----------HHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-----------DEKHQANGLRLSCYLNNAACKLKLEDYSET 78 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 78 (159)
+..+...|..+...|++++|+..|.+++.+.+....... .......+....++.++|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 678889999999999999999999999997543110000 000001233456789999999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+.++++++..+|.++.+++.+|.++...|++++|+..|++++...|+++.++..++.+...+++..+... .|.++
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a 233 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE-TLDAA 233 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888777655432 44443
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=2.1e-14 Score=99.42 Aligned_cols=114 Identities=18% Similarity=0.093 Sum_probs=103.5
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++...|++++|+.++++++.
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 457788899999999999999999999999997764 45589999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
++|.++.+++.+|.++...|++++|+..|++++.+.|+++........+
T Consensus 106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (275)
T 1xnf_A 106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA 154 (275)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999998665555544
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=4.8e-15 Score=111.47 Aligned_cols=121 Identities=11% Similarity=0.031 Sum_probs=111.6
Q ss_pred HHHHHhhhHHHHc---------ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--------h
Q 031461 11 ERKKHDGNLLFRA---------GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--------E 73 (159)
Q Consensus 11 ~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~ 73 (159)
..+...|..+... |++++|+..|.+++.+.|.+ ..++.++|.++..+ |
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---------------GRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHHHhhccccc
Confidence 5677788999999 99999999999999997765 44589999999999 9
Q ss_pred CHHHHHHHHHHHhhcCC---ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 74 DYSETSSLCTKVLELEP---LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 74 ~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
++++|+.++++++.++| .++.+++.+|.+|...|++++|+..|++++.++|+++.++..++.+...+++..+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999998888876554
No 57
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.65 E-value=1.3e-14 Score=98.91 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=97.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.+...|..++..|+|++|+..|.+++...|.++.. ..+++++|.++..+|+|++|+..+++++..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYS------------QQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTH------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 4567889999999999999999999999987765432 4568999999999999999999999999999
Q ss_pred CccHH---HHHHHHHHHHh------------------hCCHHHHHHHHHHHHhcCCCcHHHHH
Q 031461 90 PLNVK---ALYRRSQAHLK------------------TSELEKAEADIKRALTIDPNNRVVKL 131 (159)
Q Consensus 90 ~~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~~ 131 (159)
|+++. +++.+|.++.. .|++++|+..|++++...|+++.+..
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD 134 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 99864 89999999986 57999999999999999999976554
No 58
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.65 E-value=8.7e-15 Score=111.98 Aligned_cols=129 Identities=11% Similarity=0.045 Sum_probs=115.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5678889999999999999999999999997765 4558999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ---REYAKYQAEIFGTM 154 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 154 (159)
|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.+...+ ++..+... .+.+.
T Consensus 88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~-~~~~a 154 (568)
T 2vsy_A 88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA-QVRAA 154 (568)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999999998887 66655433 44443
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.64 E-value=6.6e-15 Score=110.74 Aligned_cols=128 Identities=12% Similarity=-0.008 Sum_probs=114.9
Q ss_pred HHHHHHhhhHHHHcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 10 CERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
+..+...|..++..|+| ++|+.+|.+++.+.|.+ ..++.++|.++..+|++++|+.+|++++.+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 166 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL---------------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56688899999999999 99999999999997765 455999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKT---------SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ--------REYAKYQAEIF 151 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 151 (159)
+|+ ..++..+|.++... |++++|+..|++++.++|++..++..++.+...+ ++..+... .|
T Consensus 167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~ 244 (474)
T 4abn_A 167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AY 244 (474)
T ss_dssp CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH
Confidence 998 79999999999999 9999999999999999999999999999999887 76655533 44
Q ss_pred HHH
Q 031461 152 GTM 154 (159)
Q Consensus 152 ~~~ 154 (159)
.+.
T Consensus 245 ~~a 247 (474)
T 4abn_A 245 AQA 247 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=4.1e-15 Score=103.07 Aligned_cols=74 Identities=5% Similarity=-0.047 Sum_probs=48.7
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
++.++|.++..+|++++|+.++++++.++|.++.++..+|.++...|++++|+..|++++.++|.++.++..++
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~ 149 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 35666666666666666666666666666666666666666666666666666666666666666666666665
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=1.3e-14 Score=94.49 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=111.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+..|.+++...|.+ ..++..+|.++...|++++|+.++++++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999876653 455889999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+|.++.+++.+|.++...|++++|...+++++...|.++.+...++.+....++..+.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999999999999999999999999999999999999999888777666544
No 62
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=3.5e-14 Score=96.60 Aligned_cols=118 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..++..|++++|+..|.+++...|.+ ..++..+|.++..+|++++|+..+++++..+|
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 122 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSA---------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc---------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 445556666666666666666666666664432 23355555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.++.+++.+|.++...|++++|+..+++++...|.+..+...++.+....++.
T Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 55555555555555555555555555555555555555555555555444433
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=2e-14 Score=102.65 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=102.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.+...|..++..|+|++|+..|.+++...|.+ ..++..+|.++..+|++++|+.++++++.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 5778999999999999999999999999987765 3458999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC---CcHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP---NNRVVKLVYME 135 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~ 135 (159)
|+++.+++.+|.++...|++++|+..|++++...| +++.+...+..
T Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence 99999999999999999999999999999999999 88888777743
No 64
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.63 E-value=2e-14 Score=97.87 Aligned_cols=132 Identities=7% Similarity=-0.021 Sum_probs=109.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh------------------
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK------------------ 71 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~------------------ 71 (159)
...+...|..++..|+|++|+..|.+++...|.++.. ..+++.+|.++..
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 108 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRD 108 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------C
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence 3567888999999999999999999999998876542 2346777777765
Q ss_pred hhCHHHHHHHHHHHhhcCCccHHHH-----------------HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH---HHHH
Q 031461 72 LEDYSETSSLCTKVLELEPLNVKAL-----------------YRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKL 131 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 131 (159)
+|++++|+..+++++...|+++.+. +.+|.+|...|++++|+..|++++...|+++ .+..
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 188 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP 188 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence 6899999999999999999987654 6789999999999999999999999999986 5678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031461 132 VYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.++.+...+++..+... .+..+
T Consensus 189 ~l~~~~~~~g~~~~A~~-~~~~l 210 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEK-VAKII 210 (225)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHcCCcHHHHH-HHHHH
Confidence 88888888877766533 44443
No 65
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=2.1e-15 Score=118.01 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=89.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
+.+...|..++..|++++|+..|.+++...|.+ ..+++++|.++..+|++++|+..|+++++++|
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 498 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWR---------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP 498 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456677778888888888888888888876665 34477777777777777777777777777777
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+++.+++.+|.++...|++++ +..|++++.++|++..++..++.+...+++.++.
T Consensus 499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777777777 7777777777777777777777777666665444
No 66
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=7.6e-15 Score=105.72 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=100.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..+...|++++|+..|.+++...|.+ ..++.++|.++...|++++|+.++++++.++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---------------YLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556777888888888888888888888886554 3457888888888888888888888888888
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-----------HHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----------RVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~~~~~~~~~~~~~~~ 146 (159)
|+++.+++.+|.++...|++++|+..|++++.+.|++ ..++..++.+...+++.++.
T Consensus 282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 8888888888888888889988888888888888877 77888888888777665443
No 67
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.63 E-value=8.5e-15 Score=105.75 Aligned_cols=127 Identities=13% Similarity=-0.012 Sum_probs=104.6
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV 93 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~ 93 (159)
...|..+...|++++|+..|.+++...|.... ..++.++|.++..+|++++|+.++++++.++|+++
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34588899999999999999999999776221 34588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.++..+|.++...|++++|+..|++++.++|+++.++..++.+...+++..+... .|.++
T Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a 307 (365)
T 4eqf_A 248 SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS-NFLTA 307 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999888776655432 44433
No 68
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.63 E-value=2.3e-14 Score=97.52 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=105.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...|..+...|++++|+..|.+++...|.+ ..++..+|.++...|++++|+..+++++...
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---------------GDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---------------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4556778999999999999999999999987654 3458889999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
|.++.+++.+|.++...|++++|+..|++++...|+++.++..++.+....++..+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999999999999999999999998888888888776665444
No 69
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.63 E-value=2e-15 Score=96.75 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHH
Q 031461 31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELE 110 (159)
Q Consensus 31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 110 (159)
..|.+++.+.|.+ ...++++|.++...|++++|+..+++++.++|.++.+++.+|.++...|+++
T Consensus 8 ~~~~~al~~~p~~---------------~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 72 (148)
T 2vgx_A 8 GTIAMLNEISSDT---------------LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYD 72 (148)
T ss_dssp CSHHHHTTCCHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHcCCHhh---------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHH
Confidence 3466777766554 4558899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 111 KAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 111 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+|+..|++++.++|+++.++..++.+...+++..+... .|.++
T Consensus 73 ~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~a 115 (148)
T 2vgx_A 73 LAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAES-GLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 99999999999999999999999999988877766543 44443
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=6.2e-14 Score=94.11 Aligned_cols=136 Identities=17% Similarity=0.042 Sum_probs=73.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCC-------------hH------HHHHHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFT-------------DD------EKHQANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-------------~~------~~~~~~~~~~~~~~~~a~~~~ 70 (159)
+..+...|..++..|++++|+..|.+++...|.++..- +. ......+....++.++|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45556666666666666666666666666654321100 00 000000001234555666666
Q ss_pred hh-hCHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Q 031461 71 KL-EDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 71 ~~-~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 145 (159)
.. |++++|+.++++++. ..|.++.+++.+|.++...|++++|+..|.+++...|.+..+...++.+....++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 66 666666666666666 4455556666666666666666666666666666666666666666665555554443
No 71
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.62 E-value=2.8e-14 Score=105.42 Aligned_cols=121 Identities=24% Similarity=0.288 Sum_probs=107.8
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
......|..++..|++++|+..|.+++...|.++. ....++.++|.++..+|++++|+.++++++.++|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE-----------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH-----------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 34456699999999999999999999998776432 2345689999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+...+++
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999987666544
No 72
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.62 E-value=1.5e-14 Score=97.04 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=94.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 101 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL---------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 101 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 3567889999999999999999999999997654 4558999999999999999999999999988
Q ss_pred CccH----------------HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 90 PLNV----------------KALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 90 ~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
|.+. .+++.+|.++...|++++|+..|++++.+.|++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 7766 9999999999999999999999999999999764
No 73
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.62 E-value=8.7e-16 Score=120.12 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=105.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+..+|..++..|++++|+..|.+++.+.|.++ .++.++|.++..+|++++ +.+|+++++++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~---------------~~~~~lg~~~~~~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL---------------APKLALAATAELAGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS---------------HHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence 45688899999999999999999999999988764 348999999999999999 99999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|+++.+++++|.++..+|++++|+..|++++.++|++..++..++.+...
T Consensus 531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999888888644
No 74
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=1e-14 Score=106.16 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|..++..|++++|+..|.+++...|.+ ..++.++|.++...|++++|+..+++++.++|.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 303 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF---------------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 34445555555555555555555555554432 233556666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
++.++..+|.++...|++++|+..|++++.+.|++..++..++.+....++..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 356 (388)
T 1w3b_A 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666666666666666666666666666666555544443
No 75
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=1.2e-14 Score=104.97 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=108.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..+...|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999997765 4458999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------------HHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------------RVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~~~~~~~~~~~~~~~ 146 (159)
|+++.+++.+|.++...|++++|+..|++++.+.|++ ..++..++.+...+++.+..
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 9999999999999999999999999999999998873 56777888887777665443
No 76
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.61 E-value=4.1e-14 Score=102.99 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=77.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC--------------ChH-----HHHHHHHHHHHHHhhHHHHHhh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--------------TDD-----EKHQANGLRLSCYLNNAACKLK 71 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~-----~~~~~~~~~~~~~~~~a~~~~~ 71 (159)
..+...|..+...|++++|+..|.+++...|..+.. +.. ......+-...++.++|.++..
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 249 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE 249 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH
Confidence 345556667777777777777777777765543110 000 0000111123345566666666
Q ss_pred hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.|++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++.+.|.++.++..++.+....++..+.
T Consensus 250 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 250 QGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666665555544433
No 77
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=1e-13 Score=93.05 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=93.2
Q ss_pred HHHhhhHHHHc-ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 13 KKHDGNLLFRA-GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 13 ~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
+...|..++.. |++++|+..|.+++. .+..+. ...++.++|.++...|++++|+.++++++...|.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT------------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34444455555 555555555555544 111111 2466889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHH
Q 031461 92 NVKALYRRSQAHLKTSELEKAEADIKRALTIDP-NNRVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~ 145 (159)
++.+++.+|.++...|++++|+..+++++...| .++.+......+....+....
T Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (225)
T 2vq2_A 146 FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHH
Confidence 999999999999999999999999999999999 999888777777666655443
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=8.1e-14 Score=95.58 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
+.++|.++...|++++|+.++++++. ..|.++.+++.+|.++...|++++|+..|.+++...|.+..+...++.+...
T Consensus 108 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 108 LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 33444444444444444444444444 3344444444444444444444444444444444444444444444443333
No 79
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=2.9e-14 Score=100.65 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=105.4
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH--------
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSL-------- 81 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------- 81 (159)
.+.+...|..+...|++++|+..|.+++...|.++ .++.++|.++...|++++|+..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG---------------EIGLLLAETLIALNRSEDAEAVLXTIPLQD 181 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH---------------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch---------------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence 45678899999999999999999999999988763 3477777777777777766554
Q ss_pred --------------------------HHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 031461 82 --------------------------CTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVY 133 (159)
Q Consensus 82 --------------------------~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~ 133 (159)
+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..+
T Consensus 182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 445566789999999999999999999999999999999999998 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 031461 134 MELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
..+...+++..+... .|++.+
T Consensus 262 ~~~~~~~g~~~~a~~-~~r~al 282 (287)
T 3qou_A 262 QEILAALGTGDALAS-XYRRQL 282 (287)
T ss_dssp HHHHHHHCTTCHHHH-HHHHHH
T ss_pred HHHHHHcCCCCcHHH-HHHHHH
Confidence 999888876554432 444443
No 80
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4e-14 Score=105.87 Aligned_cols=107 Identities=30% Similarity=0.301 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+...++.+...|+.++..|+|++|+..|.+++...|+ ..++.++|.++..+|++++|+.+++++
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 4567899999999999999999999999999999752 355899999999999999999999999
Q ss_pred hhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 86 LELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
+.++|+++.+++.+|.++...|++++|+..|++++...|.+..
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 108 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDA 108 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999986643
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=2e-14 Score=94.35 Aligned_cols=131 Identities=14% Similarity=0.108 Sum_probs=95.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH-------------
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE------------- 77 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------------- 77 (159)
+.....|..++..|++++|+..|.+++...|.++ .++.++|.++...|++++
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG---------------DVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH---------------HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 3456677777888888888888888887776642 224444444444444444
Q ss_pred ---------------------HHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HHHHHHHH
Q 031461 78 ---------------------TSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RVVKLVYM 134 (159)
Q Consensus 78 ---------------------A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~ 134 (159)
|+..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|+. +.++..++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~ 151 (176)
T 2r5s_A 72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM 151 (176)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence 4555666667788889999999999999999999999999999999875 56888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 031461 135 ELKDKQREYAKYQAEIFGTMLSK 157 (159)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~ 157 (159)
.+...+++..+.. ..|.+.+.+
T Consensus 152 ~~~~~~g~~~~A~-~~y~~al~~ 173 (176)
T 2r5s_A 152 DILSALGQGNAIA-SKYRRQLYS 173 (176)
T ss_dssp HHHHHHCSSCHHH-HHHHHHHHH
T ss_pred HHHHHhCCCCcHH-HHHHHHHHH
Confidence 8888877665543 366666554
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.60 E-value=3.6e-14 Score=100.32 Aligned_cols=128 Identities=12% Similarity=0.010 Sum_probs=102.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-hCHHHHHHHHHHHhh
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-EDYSETSSLCTKVLE 87 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~ 87 (159)
.+..+...|.++...|++++|+.+|.+++.+.+..... .....++.++|.++... |++++|+.++++++.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 36677888888888899999999999998887654332 12245688999999995 999999999999999
Q ss_pred cCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH-------HHHHHHHHHHHHHHHHH
Q 031461 88 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKLVYMELKDKQREYAK 145 (159)
Q Consensus 88 ~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~~~~~~ 145 (159)
+.|.. ..++..+|.++..+|++++|+..|++++.+.|++.. +...++.+...+++..+
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH
Confidence 98754 567899999999999999999999999999987653 34556666665555443
No 83
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=5.7e-14 Score=96.33 Aligned_cols=123 Identities=15% Similarity=-0.008 Sum_probs=111.8
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+..|.+++...|.. ..++..+|.++...|++++|+..+++++..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS---------------ADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 37888999999999999999999999999986654 455899999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRALT--IDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+|.++.+++.+|.++...|++++|+..|++++. ..|.+..+...++.+....++..+.
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999 8888889999888888777666554
No 84
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=3.5e-14 Score=98.35 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=102.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..+...|++++|+..|.+++...|.++ .++.++|.++..+|++++|+.++++++.++|
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 139 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL---------------DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHhhcCC
Confidence 4467788888888889999999988888876653 4589999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
.++.+++.+|...+..+++++|+..|++++.++|++..+...++.+...++.
T Consensus 140 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence 9999999999555556699999999999999999999998888888776654
No 85
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.60 E-value=1.2e-14 Score=109.53 Aligned_cols=112 Identities=25% Similarity=0.334 Sum_probs=97.6
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSS 80 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 80 (159)
|++++....++.+...|..++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~ 80 (537)
T 3fp2_A 16 LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE---------------PVFYSNISACYISTGDLEKVIE 80 (537)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHH
Confidence 4677888899999999999999999999999999999997765 4559999999999999999999
Q ss_pred HHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 81 LCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 81 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
.+++++.++|+++.+++.+|.++...|++++|+..|+ ++.+.|+...
T Consensus 81 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~ 127 (537)
T 3fp2_A 81 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDG 127 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-------
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCCh
Confidence 9999999999999999999999999999999999996 8888887654
No 86
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.59 E-value=4.3e-14 Score=100.04 Aligned_cols=122 Identities=13% Similarity=0.008 Sum_probs=100.2
Q ss_pred HHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 11 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 11 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
..+...|..++..| ++++|+..|.+++...|..+ .++..+|.++...|++++|+..+++++.+.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 155 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG---------------PAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence 44666777888888 88888888888887765543 347888999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 147 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
|.+..+++.+|.++...|++++|+..|++++...|+++.+...++.+....++..+..
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 213 (330)
T 3hym_B 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213 (330)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHH
Confidence 9888888889999999999999999999999999998888888888887776665543
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-13 Score=97.85 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=73.5
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------------HHHHHHHHHHHHHHhhHHHHHhh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------------DEKHQANGLRLSCYLNNAACKLK 71 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~a~~~~~ 71 (159)
..+...|..++..|+|++|+..|.+++...|.++..-. .......+....++..+|.++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 34677788888888888888888888888776543310 00000011112234455555555
Q ss_pred hh-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 72 LE-DYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 72 ~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.| ++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++...|++..+...++.+....++.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 55 5555555555555555555555555555555555555555555555555555555555555554444443
No 88
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=6.2e-14 Score=99.10 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=108.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...|..+...|++++|+..|.+++...|.+ ..++.++|.++...|++++|+.++++++..+
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---------------AQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4567778999999999999999999999986654 3458899999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------------cHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN------------NRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~~ 146 (159)
|+++.+++.+|.++...|++++|+..|++++.+.|. ++.++..++.+...+++.++.
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 999999999999999999999999999999999999 788888888888887776554
No 89
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.59 E-value=4.4e-15 Score=97.27 Aligned_cols=125 Identities=14% Similarity=0.088 Sum_probs=104.8
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
..+..+...|++++|+..|.+++...|.+ ..++..+|.++...|++++|+.++++++.++|.++.
T Consensus 15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 79 (177)
T 2e2e_A 15 DPLHQFASQQNPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE 79 (177)
T ss_dssp TTTCCCC-----CCCCHHHHHHHHHCCSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH
T ss_pred hhhhhhhhccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 34555678899999999999999997765 345899999999999999999999999999999999
Q ss_pred HHHHHHHH-HHhhCCH--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 95 ALYRRSQA-HLKTSEL--EKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 95 ~~~~~~~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
+++.+|.+ +...|++ ++|+..|++++..+|+++.++..++.+....++..+... .|.+++
T Consensus 80 ~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 142 (177)
T 2e2e_A 80 LYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHH
Confidence 99999999 8899999 999999999999999999999999999888877765533 454443
No 90
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.59 E-value=1.2e-13 Score=99.34 Aligned_cols=143 Identities=9% Similarity=-0.053 Sum_probs=109.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH----------------------------------HHHHHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD----------------------------------EKHQANG 56 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~----------------------------------~~~~~~~ 56 (159)
..+...|..+...|++++|+..|.+++...|..+..... ......+
T Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 133 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 445566677777777777777777777665543322100 0000111
Q ss_pred H--HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 57 L--RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 57 ~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
. ...++.++|.++...|++++|+.++++++.++|+++.+++.+|.++...|++++|+..|++++.++|++..++..++
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 292 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 1 35668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 031461 135 ELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~ 154 (159)
.+....++..+... .|.++
T Consensus 293 ~~~~~~g~~~~A~~-~~~~a 311 (368)
T 1fch_A 293 ISCINLGAHREAVE-HFLEA 311 (368)
T ss_dssp HHHHHHTCHHHHHH-HHHHH
T ss_pred HHHHHCCCHHHHHH-HHHHH
Confidence 99988877665533 44433
No 91
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.59 E-value=1.8e-13 Score=101.02 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=103.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|..++..|++++|+..|.+++...|.+ ..++..+|.++..+|++++|+.++++++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 357788999999999999999999999999986654 45589999999999999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH---HHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR---VVKLVYMEL 136 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~ 136 (159)
++|+++.+++.+|.+|...|++++|+..|++++.++|++. .++..+..+
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 776665443
No 92
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=7.9e-14 Score=98.71 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=66.6
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHH----HHHhhhhCHHHHHHHHHHHh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNA----ACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~A~~~~~~al 86 (159)
+.+...|..+...|++++|+..|.+++...|.+. ..+++ ..+...|++++|+..+++++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l 193 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEMA 193 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 4566677788888888888888888887754421 11111 11222355555555555555
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
..+|+++.+++.+|.++...|++++|...|++++.++|+++.++..++.+...+++
T Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 194 DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 55555555555555555555555555555555555555555555555554444433
No 93
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.58 E-value=1.4e-14 Score=91.91 Aligned_cols=95 Identities=8% Similarity=0.038 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...++.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++.++|+++.++..++.+..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
.+++..+... .|.++
T Consensus 98 ~~g~~~~A~~-~~~~a 112 (142)
T 2xcb_A 98 QLGDLDGAES-GFYSA 112 (142)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HcCCHHHHHH-HHHHH
Confidence 8877765533 44443
No 94
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.58 E-value=9.3e-14 Score=84.84 Aligned_cols=101 Identities=8% Similarity=0.005 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC
Q 031461 28 RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS 107 (159)
Q Consensus 28 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 107 (159)
.|+..|.+++...|.+ ..++.++|.++...|++++|+.++++++.++|.++.+++.+|.++...|
T Consensus 3 ~a~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 3 AITERLEAMLAQGTDN---------------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CHHHHHHHHHTTTCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 5788999999987765 3458999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHH
Q 031461 108 ELEKAEADIKRALTIDPN--NRVVKLVYMELKDKQREY 143 (159)
Q Consensus 108 ~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~ 143 (159)
++++|+..|++++.+.|. +......+......+++.
T Consensus 68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence 999999999999999885 345555555555555444
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.58 E-value=6.5e-14 Score=96.90 Aligned_cols=139 Identities=22% Similarity=0.186 Sum_probs=114.5
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|..++..|++++|+.+|.+++.+.......+ .+....++.++|.++...|++++|+.++++++.
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999863321000 022466799999999999999999999999998
Q ss_pred c--------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 88 L--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQAEIF 151 (159)
Q Consensus 88 ~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (159)
+ +|....++..+|.++...|++++|+..|++++.+ .|....+...++.+....++..+... .+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~ 192 (283)
T 3edt_B 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LY 192 (283)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence 8 5778999999999999999999999999999998 67677888888888888777655433 44
Q ss_pred HHH
Q 031461 152 GTM 154 (159)
Q Consensus 152 ~~~ 154 (159)
.++
T Consensus 193 ~~~ 195 (283)
T 3edt_B 193 KEI 195 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 96
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.3e-15 Score=90.98 Aligned_cols=94 Identities=23% Similarity=0.377 Sum_probs=75.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.+...|..++..|+|++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---------------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 5667788888888888888888888888886654 3447888888888888888888888888888
Q ss_pred Ccc------HHHHHHHHHHHHhhCCHHHHHHHHHH
Q 031461 90 PLN------VKALYRRSQAHLKTSELEKAEADIKR 118 (159)
Q Consensus 90 ~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~ 118 (159)
|++ ..+++.+|.++...|+++.|+..+++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 887 88888888888888887777655543
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.57 E-value=8.6e-14 Score=98.35 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=106.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
-..+..+...|+.+...|+|++|+..|.+++.+.+..... .....++.++|.++..+|++++|+.++++++
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al 104 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455667777888999999999999999999997643221 1235679999999999999999999999999
Q ss_pred hcCCcc------HHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLN------VKALYRRSQAHLKT-SELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 87 ~~~~~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+.|.. +.++.++|.+|... |++++|+.+|++++.+.|.+ ..+...++.+...+++..+.
T Consensus 105 ~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 105 QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 987643 56899999999996 99999999999999998754 34566777777777666554
No 98
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.1e-14 Score=86.11 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+.++|..+...|+|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.++..++.+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45588999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
.+++..+... .|.++
T Consensus 84 ~~~~~~~A~~-~~~~a 98 (126)
T 3upv_A 84 AVKEYASALE-TLDAA 98 (126)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HHhCHHHHHH-HHHHH
Confidence 8877765533 44443
No 99
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.55 E-value=2.5e-13 Score=84.03 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=85.5
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
++.+|..+...|++++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+....+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHh
Q 031461 142 EYAKYQAEIFGTML 155 (159)
Q Consensus 142 ~~~~~~~~~~~~~~ 155 (159)
+..+... .+.++.
T Consensus 100 ~~~~A~~-~~~~al 112 (121)
T 1hxi_A 100 NANAALA-SLRAWL 112 (121)
T ss_dssp HHHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 8866543 555543
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=5.8e-14 Score=97.18 Aligned_cols=127 Identities=9% Similarity=-0.075 Sum_probs=107.6
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
.+......|++++|+..|.+++...+.++ +....++..+|.++...|++++|+.++++++.++|.++.+
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 79 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTD-----------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccC-----------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence 34445567999999999999998743221 1235678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
++.+|.++...|++++|+..|++++.++|+++.++..++.+....++..+... .|.++
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a 137 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAF 137 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999988777655433 44444
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.55 E-value=3e-13 Score=83.43 Aligned_cols=102 Identities=27% Similarity=0.387 Sum_probs=92.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...|..++..|++++|+..|.+++...|.+ ..++.++|.++...|++++|+..+++++...
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3456678999999999999999999999986653 3458899999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
|.++.+++.+|.++...|++++|...+.+++..+|++
T Consensus 100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999998863
No 102
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.54 E-value=2.8e-14 Score=89.12 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=75.3
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHH-------HHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRV-------VKL 131 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~ 131 (159)
..++.++|..+++.|+|++|+.+|+++|.++|+++.++.++|.+|..+|++++|+.+|++++.++|++.. ++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4558899999999999999999999999999999999999999999999999999999999999887643 455
Q ss_pred HHHHHHHHHHHHHHH
Q 031461 132 VYMELKDKQREYAKY 146 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (159)
.++.+...+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A 102 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLA 102 (127)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCHHHH
Confidence 555555555555443
No 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.7e-13 Score=100.64 Aligned_cols=120 Identities=14% Similarity=0.154 Sum_probs=102.4
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh---hhCHHHHHHHHHHHhh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK---LEDYSETSSLCTKVLE 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~ 87 (159)
..+...|..++..|++++|+..|.+++...|.++.... ...++.++|.++.. .|++++|+.++++++.
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 44667788888889999999999998888776654210 01258999999999 9999999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
++|+++.+++.+|.++...|++++|+..|++++.++|+++.+...+.-....
T Consensus 444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 495 (514)
T 2gw1_A 444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA 495 (514)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888777655543
No 104
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.53 E-value=2.2e-13 Score=102.55 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=99.2
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-------------ChHH------HHHHHHHHHHHHhhHHHH
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-------------TDDE------KHQANGLRLSCYLNNAAC 68 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~~~a~~ 68 (159)
..+..+...|..++..|++++|+..|.+++...|. +.. .... .....+-...++..+|.+
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 319 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 34667888888888888888888888888887654 100 0000 011112224467788888
Q ss_pred HhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 69 KLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 69 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+...|++++|+..+++++.++|.++.+++.+|.++...|++++|+..|++++...|+++.++..++.+....++..+.
T Consensus 320 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 397 (537)
T 3fp2_A 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888777777766665444
No 105
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.53 E-value=5.5e-13 Score=99.18 Aligned_cols=126 Identities=17% Similarity=0.053 Sum_probs=100.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+..+|.+++..|++++|+.+|.+++++.+....... ++-...+|.|+|.+|..+|++++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~------~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA------EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC------TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc------chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 455778999999999999999999999998653211000 01125568999999999999999999999998763
Q ss_pred --------CccHHHHHHHHHHHHhh--CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 90 --------PLNVKALYRRSQAHLKT--SELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 90 --------~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+..+..+..+|.++... ++|++|+.+|++++.++|+++.+...++.+...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 34578888888877665 47999999999999999999998888887765543
No 106
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=7.5e-13 Score=96.44 Aligned_cols=132 Identities=19% Similarity=0.154 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..++..|+++.|+.+|.+++.+.+..+... .....++.++|.++..+|++++|+.++++++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN--------IRLLQCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34677888999999999999999999999999877654321 2345678899999999999999999999999
Q ss_pred hcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHh-----cC-CCcHHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALT-----ID-PNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 87 ~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+.+.. ..++.++|.+|...|++++|+.+|++++. .+ |....+...++.+...+++..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 283 (383)
T 3ulq_A 212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence 875433 45889999999999999999999999998 45 77777888888887776665544
No 107
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.52 E-value=6.5e-13 Score=84.48 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
....+..+...|..++..|++++|+.+|.+++.+.+..+.. .....++.++|.++..+|++++|+.+++++
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34568889999999999999999999999999997754332 233567899999999999999999999999
Q ss_pred hhcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHH
Q 031461 86 LELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 86 l~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~ 146 (159)
+.+.+.. ..+++.+|.++...|++++|+..+++++.+.+. ...+...++.+....++..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 9876542 678999999999999999999999999877432 134566667777666665544
No 108
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.51 E-value=4.5e-13 Score=86.74 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=86.7
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+..+|.++...|+|++|+.+|++++.++|.++.+++.+|.+|...|++++|+.+|++++.++|++..++..++.+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
.+++..+... .|.++
T Consensus 91 ~~g~~~~A~~-~~~~a 105 (164)
T 3sz7_A 91 DMADYKGAKE-AYEKG 105 (164)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HccCHHHHHH-HHHHH
Confidence 8887766543 44444
No 109
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.51 E-value=6.2e-13 Score=94.11 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=87.7
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
...|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+..+++++.++|+++.+++++|
T Consensus 177 ~~~~~~~eA~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~ 241 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADKCSPT---------------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV 241 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHHSCCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34589999999999999997764 456999999999999999999999999999999999999999
Q ss_pred HHHHhhCCHHH-HHHHHHHHHhcCCCcHHHHHH
Q 031461 101 QAHLKTSELEK-AEADIKRALTIDPNNRVVKLV 132 (159)
Q Consensus 101 ~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~ 132 (159)
.++...|++++ +..++++++.++|+++.+...
T Consensus 242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999987 568899999999999987653
No 110
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.51 E-value=1.9e-12 Score=91.41 Aligned_cols=136 Identities=11% Similarity=-0.012 Sum_probs=107.5
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh------------------------HHHH----------HHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD------------------------DEKH----------QANG 56 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------------------~~~~----------~~~~ 56 (159)
..+...|..+...|++++|+..|.+++...|....... .... ...+
T Consensus 90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 169 (327)
T 3cv0_A 90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence 45666777888888888888888888877655332110 0000 0111
Q ss_pred HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
....++..+|.++...|++++|+.++++++..+|+++.++..+|.++...|++++|+..|++++...|++..++..++.+
T Consensus 170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 12456889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 031461 137 KDKQREYAKY 146 (159)
Q Consensus 137 ~~~~~~~~~~ 146 (159)
....++..+.
T Consensus 250 ~~~~g~~~~A 259 (327)
T 3cv0_A 250 YSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHH
T ss_pred HHHhccHHHH
Confidence 8877766554
No 111
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.8e-13 Score=80.20 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLV 132 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 132 (159)
...+.++|.++...|+|++|+..+++++.++|.++.+++++|.++..+|++++|+..|++++.++|++ ..+...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999998 666666
Q ss_pred HHHHHHHHH
Q 031461 133 YMELKDKQR 141 (159)
Q Consensus 133 ~~~~~~~~~ 141 (159)
++.+...++
T Consensus 84 ~~~~~~~~~ 92 (111)
T 2l6j_A 84 LELAQGAVG 92 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 112
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.50 E-value=1.3e-12 Score=99.63 Aligned_cols=129 Identities=9% Similarity=-0.028 Sum_probs=110.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..+...|++++|+..|.+++...|.+ ..++..+|.++...|++++|+..+++++...
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF---------------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456778889999999999999999999876654 3458899999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
|.++.++..+|.++...|++++|+..|++++...|.++.++..+..+....++.++... .|.++
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 501 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNA 501 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999888888877766655433 44444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=3.2e-13 Score=103.35 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.|++++|+..|.+++...|.+ ..++.++|.++...|++++|+..+++++.++|+++.+++.+|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 66 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD---------------FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV 66 (568)
T ss_dssp -------------------CC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 478999999999999987765 45599999999999999999999999999999999999999999
Q ss_pred HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 103 HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+...|++++|+..|++++.++|++..++..++.+....++..+... .|.+.
T Consensus 67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~a 117 (568)
T 2vsy_A 67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRA 117 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999988877765533 44443
No 114
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.49 E-value=7.9e-13 Score=76.87 Aligned_cols=81 Identities=31% Similarity=0.393 Sum_probs=76.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..++.++|.++...|++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++.+...++.+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999888887765
Q ss_pred H
Q 031461 139 K 139 (159)
Q Consensus 139 ~ 139 (159)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 4
No 115
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.49 E-value=7e-13 Score=91.66 Aligned_cols=109 Identities=20% Similarity=0.074 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..+...|++++|+.+|.+++.........+ .+....++.++|.++..+|++++|+.++++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34577888999999999999999999999999853321110 02236679999999999999999999999999
Q ss_pred hc--------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 87 EL--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 87 ~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
.+ .|....++..+|.++...|++++|+..+++++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98 7888999999999999999999999999999976
No 116
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.49 E-value=5.6e-13 Score=85.89 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=84.8
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-------cHH-----HHHHHHHHHHhhCCHHHHHHHHHHHHhc----
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPL-------NVK-----ALYRRSQAHLKTSELEKAEADIKRALTI---- 122 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 122 (159)
...+.++|..++..|+|++|+..|+++|+++|+ +.. +|.++|.++..+|+|++|+.+|.+++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 445789999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 123 ---DPNNRVVK----LVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 123 ---~p~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+|++..++ ...+.+...+++.++... .|.+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kA 128 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKV 128 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHH
Confidence 99999999 999999999888877644 55554
No 117
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.6e-12 Score=94.63 Aligned_cols=132 Identities=13% Similarity=0.029 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..++..|+++.|+.+|.+++.+.+..+... .....++.++|.++..+|++++|+.++++++
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS--------IRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch--------hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45677888889999999999999999999999877644321 2245668888999999999999999998888
Q ss_pred hcCC------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEP------LNVKALYRRSQAHLKTSELEKAEADIKRALT-----IDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 87 ~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+.+ ....++.++|.+|...|++++|+..|++++. .+|....+...++.+...+++..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 280 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence 7632 2356788889999999999999999998888 6777777888888888777666554
No 118
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.47 E-value=3.8e-12 Score=96.07 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
.+..+....+.+..+..+|+|++|+..|.+++.+....-..+ .+....++.++|.+|..+|+|++|+.+++++
T Consensus 305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 344566677788888899999999999999999865422111 1234677999999999999999999999999
Q ss_pred hhcC--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCcHHHH---HHHHHHHHHHHHHHHHHHH
Q 031461 86 LELE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVK---LVYMELKDKQREYAKYQAE 149 (159)
Q Consensus 86 l~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~~~~~~~~~~~~~~~~~~ 149 (159)
+.+. |+....+.++|.+|..+|++++|...|++|+.+ -|+++.+. ..+..++..++++++.+.
T Consensus 378 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~- 456 (490)
T 3n71_A 378 VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF- 456 (490)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9662 455778999999999999999999999999866 56776554 455556666666655543
Q ss_pred HHHHH
Q 031461 150 IFGTM 154 (159)
Q Consensus 150 ~~~~~ 154 (159)
.|.++
T Consensus 457 ~~~~~ 461 (490)
T 3n71_A 457 MYHKM 461 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.47 E-value=1e-12 Score=92.68 Aligned_cols=124 Identities=14% Similarity=0.008 Sum_probs=101.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 88 (159)
+..+...|..+...+++++|+.+|.+++.+.+..... .....++.++|.+|..+|++++|+.++++++..
T Consensus 115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4455568888888899999999999999975544332 123456899999999999999999999999942
Q ss_pred ------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHH
Q 031461 89 ------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE 142 (159)
Q Consensus 89 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~ 142 (159)
.+..+.+++++|.+|..+|+|++|+..+++++.+.+.. ..+...++.+...+++
T Consensus 186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 23446789999999999999999999999999886543 6788888888888774
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.47 E-value=1.6e-12 Score=81.22 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+..+|.++...|+|++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
.+++..+... .|.++
T Consensus 89 ~~~~~~~A~~-~~~~a 103 (137)
T 3q49_B 89 EMESYDEAIA-NLQRA 103 (137)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HHhhHHHHHH-HHHHH
Confidence 8877655432 44443
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.47 E-value=9.1e-13 Score=93.69 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=85.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|.++.. |++++|+.+|.+++.+.+..... .....++.++|.++..+|+|++|+.++++++.+
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566777777777 88888888888888876643221 223567889999999999999999999999988
Q ss_pred CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
.|.+ ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 6543 3478889999999999999999999999 988754
No 122
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=2.2e-12 Score=93.99 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..+...|+|++|+.+|.+++.+.+..+.. .....++.++|.++..+|++++|+.++++++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP---------QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456778899999999999999999999999997765332 3446679999999999999999999999999
Q ss_pred h-----cC-CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 87 E-----LE-PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 87 ~-----~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
. .+ |..+.+++.+|.++..+|++++|+..+++++.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9 46 88899999999999999999999999999998853
No 123
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.46 E-value=5.4e-12 Score=96.31 Aligned_cols=145 Identities=10% Similarity=0.022 Sum_probs=110.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh-------------HHHH------HHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD-------------DEKH------QANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------------~~~~------~~~~~~~~~~~~~a~~~~ 70 (159)
+..+...|..++..|++++|+..|.+++...|.+...-. +... ...+....++..+|.++.
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 384 (597)
T 2xpi_A 305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL 384 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 455677889999999999999999999988765433210 0000 011112456778888999
Q ss_pred hhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 71 KLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEI 150 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (159)
..|++++|+..+++++.++|.+..++..+|.+|...|++++|+..|++++...|++..++..+..+....+..++... .
T Consensus 385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~ 463 (597)
T 2xpi_A 385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-Y 463 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH-H
Confidence 999999999999999999998888999999999999999999999999999999888888888888877777655533 5
Q ss_pred HHHHh
Q 031461 151 FGTML 155 (159)
Q Consensus 151 ~~~~~ 155 (159)
|.++.
T Consensus 464 ~~~~~ 468 (597)
T 2xpi_A 464 LQSSY 468 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 124
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.46 E-value=4e-12 Score=92.55 Aligned_cols=109 Identities=17% Similarity=-0.020 Sum_probs=96.5
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|..+...|+|++|+.+|.+++.+.+..+.. .....++.++|.++..+|++++|+.++++++.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457778899999999999999999999999987643321 23466799999999999999999999999999
Q ss_pred -----cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 88 -----LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 88 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
.+|..+.+++.+|.++...|++++|+..+++++.+.+.
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999998543
No 125
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=1.9e-12 Score=94.63 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=108.3
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..++..|++++|+.+|.+++...|.++ .....++..+|.++..+|++++|+.++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35677788999999999999999999999999966543 2234678999999999999999999999999
Q ss_pred hc------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHH
Q 031461 87 EL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 87 ~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~ 142 (159)
.+ .|....++..+|.++...|++++|+..|++++.+ .|....+...++.+....++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 88 5778899999999999999999999999999988 45556677788888877777
No 126
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=3.5e-12 Score=89.43 Aligned_cols=140 Identities=21% Similarity=0.173 Sum_probs=112.9
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+..+...|..++..|++++|+.+|.+++.........+ .+....++.++|.++..+|++++|+.++++++
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 138 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34567788899999999999999999999999864320000 02236678999999999999999999999999
Q ss_pred hcC--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELE--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--------DPNNRVVKLVYMELKDKQREYAKYQAEI 150 (159)
Q Consensus 87 ~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (159)
.+. |....++..+|.++...|++++|+..|++++.+ .|....+...++.+....++..+... .
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~ 217 (311)
T 3nf1_A 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-L 217 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-H
Confidence 874 667889999999999999999999999999988 66667788888888887777665533 4
Q ss_pred HHHH
Q 031461 151 FGTM 154 (159)
Q Consensus 151 ~~~~ 154 (159)
+.++
T Consensus 218 ~~~a 221 (311)
T 3nf1_A 218 YKEI 221 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 127
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.4e-12 Score=90.28 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=112.4
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|..++..|++++|+.+|.+++.+........ .+....++.++|.++...|++++|+.++++++.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999863220000 022356789999999999999999999999999
Q ss_pred c--------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-------------------------------------
Q 031461 88 L--------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------------------------------------- 122 (159)
Q Consensus 88 ~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------------------------- 122 (159)
+ .|....++..+|.++...|++++|+..|++++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 8 7778899999999999999999999999999974
Q ss_pred ------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031461 123 ------------DPNNRVVKLVYMELKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 123 ------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (159)
.|.+..++..++.+....++..+... .|.+.+
T Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al 305 (311)
T 3nf1_A 262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET-LEEAAM 305 (311)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence 35566777888888887777765533 454443
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=2e-12 Score=91.25 Aligned_cols=107 Identities=18% Similarity=0.129 Sum_probs=91.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|.+++..|+|++|+.+|.+++......+.. ......++.++|.++..+|+|++|+.++++++.+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999999876544222 2345668999999999999999999999999988
Q ss_pred CCcc------HHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcC
Q 031461 89 EPLN------VKALYRRSQAHLKTS-ELEKAEADIKRALTID 123 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~ 123 (159)
.+.. +.+++.+|.++..+| ++++|+..|++++.+.
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6443 889999999999999 5799999999998763
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.44 E-value=8.4e-13 Score=93.88 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=85.3
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|.++...|+|++|+.+|.+++.+.+..... .....++.++|.++.. |++++|+.++++++.+
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 35566777777777788888888888888775543221 1235668899999988 9999999999999988
Q ss_pred CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
.|.. ..++.++|.+|..+|++++|+..|++++.+.|.+
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 7643 6788999999999999999999999999886644
No 130
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.44 E-value=2.2e-13 Score=80.80 Aligned_cols=67 Identities=18% Similarity=0.276 Sum_probs=33.4
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCccHH-HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHH
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLNVK-ALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVK 130 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 130 (159)
++|.++...|++++|+..+++++..+|.++. +++.+|.++...|++++|+..|++++.++|++..++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444444555555555555555555555444 555555555555555555555555555555444443
No 131
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.44 E-value=3.9e-12 Score=73.87 Aligned_cols=84 Identities=27% Similarity=0.333 Sum_probs=76.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 46778889999999999999999999999987654 345889999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhC
Q 031461 89 EPLNVKALYRRSQAHLKTS 107 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~ 107 (159)
+|.++.++..+|.++...|
T Consensus 73 ~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CTTCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998765
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=5.8e-12 Score=88.83 Aligned_cols=127 Identities=14% Similarity=-0.025 Sum_probs=97.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh---h
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL---E 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~ 87 (159)
..+...|..+...|++++|+.+|.+++...+..... .....++.++|.+|..+|++++|+.++++++ .
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~ 186 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 334556777777788888888888888765543222 1124578999999999999999999999999 4
Q ss_pred cCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHHHHHHHH
Q 031461 88 LEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTIDPN------NRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 88 ~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~ 146 (159)
..|++ +.+++++|.+|..+|+|++|+..+++++.+.+. ...+...++.+...+++.++.
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 45543 368999999999999999999999999987542 156777788887776655444
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.43 E-value=4e-12 Score=91.65 Aligned_cols=99 Identities=12% Similarity=0.041 Sum_probs=89.6
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+..+|..++..|+|++|+..|.+++.+.|.+ ..+++++|.++..+|++++|+.++++++.+
T Consensus 195 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN---------------EKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999997765 456999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHH-HHHHHHHHhc
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKA-EADIKRALTI 122 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 122 (159)
+|++..++..+|.++...|++++| ...|.+++..
T Consensus 260 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 5566666543
No 134
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=5.4e-12 Score=91.59 Aligned_cols=129 Identities=15% Similarity=0.043 Sum_probs=106.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+.+|.+++.+.+..+.. .....++.++|.++..+|++++|+.++++++.+
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45678889999999999999999999999997765432 233557899999999999999999999999988
Q ss_pred CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~ 146 (159)
.|.. ..++..+|.++...|++++|+..|++++.+.+.. ..+...++.+....++..+.
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7655 7789999999999999999999999999885543 55666777777766665444
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.42 E-value=1.9e-12 Score=77.64 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=84.8
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYMELK 137 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~ 137 (159)
.++..+|.++...|++++|+.++++++.++|.++.+++.+|.++...|++++|+..|++++...|. +..++..++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 348899999999999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHH-HHHHHHHHHHHHHHh
Q 031461 138 DKQ-REYAKYQAEIFGTML 155 (159)
Q Consensus 138 ~~~-~~~~~~~~~~~~~~~ 155 (159)
..+ ++..+... .+.++.
T Consensus 87 ~~~~~~~~~A~~-~~~~~~ 104 (112)
T 2kck_A 87 RYIEGKEVEAEI-AEARAK 104 (112)
T ss_dssp TTCSSCSHHHHH-HHHHHG
T ss_pred HHHhCCHHHHHH-HHHHHh
Confidence 887 76655433 454443
No 136
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.41 E-value=2.9e-12 Score=82.72 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=85.1
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc------------------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL------------------EPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
...+.++|..++..|+|++|+..|++++.+ +|.++.+++++|.+|..+|++++|+.++.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445889999999999999999999999999 77888999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 121 TIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 121 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.++|+++.++..++.+...+++..+... .|.+.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~a 123 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLL 123 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHH
Confidence 9999999999999999988888766543 44443
No 137
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.41 E-value=5.2e-12 Score=89.72 Aligned_cols=119 Identities=11% Similarity=0.006 Sum_probs=73.0
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..+...|++++|+..|.+++...|.++. .++.++|.++...|++++|...|++++..+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 34556677777888888888888888887554321 1356666666666666666666666666666
Q ss_pred ccHHHHHHHHHHHH-hhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHL-KTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREY 143 (159)
Q Consensus 91 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 143 (159)
.+...++..+.... ..|++++|...|++++...|+++.++..+..+....++.
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 219 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED 219 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence 55555554444432 246666666666666666666666655555555444333
No 138
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=4.4e-12 Score=89.39 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=102.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 88 (159)
+..+...|..++..|++++|+..|.+++...|.++ .....++..+|.++...|++++|+.++++++.+
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 55677899999999999999999999999866543 223567899999999999999999999999887
Q ss_pred -----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHH
Q 031461 89 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE 142 (159)
Q Consensus 89 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~ 142 (159)
.|..+.++..+|.++...|++++|+..+.+++.+.|.. ..+...++.+....++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 45568899999999999999999999999999886543 2366667777766666
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.41 E-value=8.1e-12 Score=82.76 Aligned_cols=129 Identities=9% Similarity=0.085 Sum_probs=102.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+.+|.+++.+....... +....++.++|.++..+|++++|+.++++++.+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH---------TAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999986643321 334667999999999999999999999999988
Q ss_pred ---CC----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC--CcH----HHHHHHHHHHHHHHHHHHH
Q 031461 89 ---EP----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDP--NNR----VVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 89 ---~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~~~~~~~~~~~~~~~~ 146 (159)
.+ ....++..+|.++...|++++|+..+++++.+.+ .++ .+...++.+....++..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 166 (203)
T 3gw4_A 96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA 166 (203)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence 33 3467799999999999999999999999987643 222 2345666666655555443
No 140
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.40 E-value=4.1e-12 Score=75.83 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=64.5
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
..++.++|.++..+|++++|+.++++++.++|+++.+++.+|.+|...|++++|+..|++++.+.|.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 45689999999999999999999999999999999999999999999999999999999999997754
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.40 E-value=1.4e-11 Score=74.39 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=84.7
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..+++++...|+++.+...++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
..++..+... .+.+.
T Consensus 84 ~~~~~~~A~~-~~~~~ 98 (118)
T 1elw_A 84 FLNRFEEAKR-TYEEG 98 (118)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HHhhHHHHHH-HHHHH
Confidence 8777655433 44443
No 142
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.7e-12 Score=91.93 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=103.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 88 (159)
+..+...|..++..|++++|+.+|.+++...|.++ .....++..+|.++...|++++|+.++++++.+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999966543 223567899999999999999999999999887
Q ss_pred -----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHH
Q 031461 89 -----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQRE 142 (159)
Q Consensus 89 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~ 142 (159)
.|..+.++..+|.++...|++++|+..+.+++.+.|.. ..+...++.+....++
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 45568899999999999999999999999999887643 3467777777777666
No 143
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.39 E-value=8.9e-12 Score=79.91 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=85.7
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+...|..++..|++++|+..|.+++...|.+ ..++.++|.++..+|++++|+.++++++.++
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4567788999999999999999999999997654 3458999999999999999999999999999
Q ss_pred CccHHHHHH--HHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 90 PLNVKALYR--RSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 90 ~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|.+..++.. ++..+...|++++|+..+.++..+
T Consensus 112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999888854 555588999999999999887544
No 144
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.39 E-value=8.9e-12 Score=76.95 Aligned_cols=93 Identities=24% Similarity=0.196 Sum_probs=82.8
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH---HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNV---KALYRRSQAHLKTSELEKAEADIKRALTIDPNN---RVVKLVYME 135 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~ 135 (159)
++.+|.++...|+|++|+..+++++..+|+++ .+++.+|.++...|++++|+..|++++...|++ +.+...++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 78899999999999999999999999999988 899999999999999999999999999999999 888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 031461 136 LKDKQREYAKYQAEIFGTML 155 (159)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~ 155 (159)
+...+++..+... .|.++.
T Consensus 85 ~~~~~g~~~~A~~-~~~~~~ 103 (129)
T 2xev_A 85 SQYGEGKNTEAQQ-TLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHH-HHHHHH
T ss_pred HHHHcCCHHHHHH-HHHHHH
Confidence 9888777655533 454443
No 145
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.38 E-value=8.7e-12 Score=73.79 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=54.0
Q ss_pred HHHH-HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 57 LRLS-CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 57 ~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
-... ++.++|.++..+|++++|+.++++++.++|+++.++.+ +.+.+++..|+++...+|+++
T Consensus 32 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 32 VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 3445 78999999999999999999999999999999988754 677888888888888877654
No 146
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.38 E-value=1.2e-11 Score=78.47 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=91.4
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+.+|.+++.+.+..... .....++.++|.++...|++++|+.++++++.+
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999987654322 234567899999999999999999999999977
Q ss_pred CC------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 89 EP------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 89 ~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
.+ ....++..+|.++...|++++|+..+++++.+...
T Consensus 119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 42 23678899999999999999999999999877543
No 147
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.5e-11 Score=86.68 Aligned_cols=136 Identities=14% Similarity=0.028 Sum_probs=109.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+.+|.+++...+..+.. .....++.++|.++...|++++|+.++++++.+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 252 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999987764332 233557899999999999999999999999988
Q ss_pred CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.+.. ..++..+|.++...|++++|+..+++++.+.|.. ..+...++.+....++..+... .+.+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a 329 (338)
T 3ro2_A 253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH-FAEKH 329 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHHH
Confidence 7654 7889999999999999999999999999886543 3466677777777776655433 44444
No 148
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=99.01 Aligned_cols=110 Identities=11% Similarity=-0.027 Sum_probs=68.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH-HhhhhCHHHHHHHHHHHhhcC--
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-KLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~A~~~~~~al~~~-- 89 (159)
+...|..+...|++++|+.+|.+++...+.+.. ...++.++|.. ...+|++++|+.+|++++.++
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVA------------KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH------------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 456799999999999999999999987554321 12335556544 457899999999999988764
Q ss_pred ----------------------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 90 ----------------------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 90 ----------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
|.++.++..+|.+|...|++++|+.+|++|+.+.|.+|.+..+++
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 666789999999999999999999999999999999998887765
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.36 E-value=1.5e-11 Score=75.93 Aligned_cols=95 Identities=15% Similarity=0.166 Sum_probs=85.4
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..+++++.++|++..++..++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 56689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGTM 154 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (159)
..++..+... .|.+.
T Consensus 96 ~~~~~~~A~~-~~~~~ 110 (133)
T 2lni_A 96 AMKDYTKAMD-VYQKA 110 (133)
T ss_dssp HTTCHHHHHH-HHHHH
T ss_pred HHhhHHHHHH-HHHHH
Confidence 8777655433 44443
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=1.1e-11 Score=90.50 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=105.0
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|++++|+.+|.+++.+.+..... .....++.++|.++..+|++++|+.++++++.+
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45577889999999999999999999999998764331 223456889999999999999999999999988
Q ss_pred CCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHHHHHHHH
Q 031461 89 EPLN------VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN------RVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 89 ~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+.. ..++..+|.++...|++++|+..|++++.+.+.. ..+...++.+...+++..+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 362 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERA 362 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 7643 7889999999999999999999999999885533 34666677777666665444
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.36 E-value=7e-13 Score=99.32 Aligned_cols=95 Identities=17% Similarity=0.122 Sum_probs=85.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---------------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---------------VKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
...+.++|.+++..|+|++|+.+|++++.++|.+ ..+++++|.||..+|+|++|+.+|.+++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 5568999999999999999999999999999988 6999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 124 PNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 124 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
|++..++..++.+...+++..+... .|.++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~-~~~~a 377 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKG-DFEKV 377 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence 9999999999999988877766533 44444
No 152
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.35 E-value=3.5e-11 Score=85.40 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH-HHHHHHHHH
Q 031461 26 YWRASKKYEKAAK-IIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK-ALYRRSQAH 103 (159)
Q Consensus 26 ~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 103 (159)
+++|+..|.+++. +.|.+ ..++.++|.++...|++++|...|++++.+.|.++. +|..+|.++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 144 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 144 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHH
Confidence 4999999999999 66654 456899999999999999999999999999999987 999999999
Q ss_pred HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 104 LKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 104 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
...|++++|...|++++...|.+..++.....+
T Consensus 145 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~ 177 (308)
T 2ond_A 145 RRAEGIKSGRMIFKKAREDARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999887766544443
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.35 E-value=5e-11 Score=73.07 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=85.3
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
....+..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..+.+++...|+++.++..++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031461 138 DKQREYAKYQAEIFGTM 154 (159)
Q Consensus 138 ~~~~~~~~~~~~~~~~~ 154 (159)
...++..+... .|.++
T Consensus 91 ~~~~~~~~A~~-~~~~~ 106 (131)
T 2vyi_A 91 SSLNKHVEAVA-YYKKA 106 (131)
T ss_dssp HHTTCHHHHHH-HHHHH
T ss_pred HHhCCHHHHHH-HHHHH
Confidence 87776655433 44433
No 154
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.34 E-value=1.1e-10 Score=81.04 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=68.6
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKV 85 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a 85 (159)
+..+...|..++..|++++|+.+|.+++.. .+ ..++.++|.++.. .+++++|+.+++++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KE---------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---------------HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 455677777788888888888888877762 11 2335566666666 66666666666666
Q ss_pred hhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 86 LELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
+..+ ++.+++.+|.+|.. .+++++|+.+|++++... ++.+...++.+...
T Consensus 69 ~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 69 CDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD 122 (273)
T ss_dssp HHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence 6654 55666666666666 666666666666666552 45555555555544
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.33 E-value=1.6e-10 Score=81.36 Aligned_cols=130 Identities=18% Similarity=0.059 Sum_probs=101.7
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
.....+...+..++..|+|++|+..|.+++...+..+. .......+..+|.++...|++++|+.++++++.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE---------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH---------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh---------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 34566778899999999999999999999987543211 012234466799999999999999999999998
Q ss_pred cCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHHHHHHHHH
Q 031461 88 LEPLN------VKALYRRSQAHLKTSELEKAEADIKRAL---TIDPNNR----VVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 88 ~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~~~~~~~~~~~~~~~ 146 (159)
+.+.. ..++..+|.+|...|++++|+..|++++ ...|++. .+...++.+...+++.++.
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 2qfc_A 144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHH
Confidence 65433 6689999999999999999999999999 5566653 4667777777666666554
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.33 E-value=5.4e-12 Score=84.01 Aligned_cols=95 Identities=12% Similarity=-0.053 Sum_probs=84.8
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccH----------------HHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNV----------------KALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
...+..+|.++...|+|++|+..+++++.+.|.++ .+++++|.++...|++++|+.++.+++.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45588999999999999999999999999999887 89999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 123 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 123 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+|++..+...++.+...+++..+... .|.+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~a 148 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKE-NLYKA 148 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence 99999999999999988877765533 44443
No 157
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.32 E-value=9.8e-11 Score=87.15 Aligned_cols=120 Identities=9% Similarity=0.028 Sum_probs=94.9
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 88 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 88 (159)
+....+.+......|+|++|+..|.+++.+....-..+ .+....++.++|.+|..+|+|++|+.++++++.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~ 370 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 33445555556667899999999999999865321111 1334677999999999999999999999999966
Q ss_pred -------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHH
Q 031461 89 -------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMEL 136 (159)
Q Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~ 136 (159)
.|+....+.++|.+|..+|++++|...|++|+.+ -|+++.+......+
T Consensus 371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 2455778999999999999999999999999876 68888877665554
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.2e-11 Score=74.51 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=84.9
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
...+..+|.++...|+|++|+..+++++.++|++ ..+++.+|.++...|++++|+..|++++.++|++..++..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 4568899999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 031461 136 LKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~ 154 (159)
+...+++..+... .|.++
T Consensus 108 ~~~~~~~~~~A~~-~~~~a 125 (148)
T 2dba_A 108 ALEKLGRLDQAVL-DLQRC 125 (148)
T ss_dssp HHHHHTCHHHHHH-HHHHH
T ss_pred HHHHcCCHHHHHH-HHHHH
Confidence 9888877655533 44444
No 159
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.31 E-value=4e-11 Score=84.29 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=85.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
...+..+|..+...|+|++|+..+++++..+|+++.+++++|.++...|++++|+..+++++.++|++..++..++.+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHH
Q 031461 139 KQREYAKYQAEIFGT 153 (159)
Q Consensus 139 ~~~~~~~~~~~~~~~ 153 (159)
.+++..+... .|.+
T Consensus 84 ~~g~~~~A~~-~~~~ 97 (281)
T 2c2l_A 84 EMESYDEAIA-NLQR 97 (281)
T ss_dssp HTTCHHHHHH-HHHH
T ss_pred HcCCHHHHHH-HHHH
Confidence 8877765543 4443
No 160
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=7.3e-11 Score=75.25 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh---CHHHHHHHHHHHhhcC-C-ccHHHHHHH
Q 031461 25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE---DYSETSSLCTKVLELE-P-LNVKALYRR 99 (159)
Q Consensus 25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-~-~~~~~~~~~ 99 (159)
....+...|...+...+.+ ..+.+++|.++.+.+ ++.+++..++.+++.+ | ...+++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~---------------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~L 77 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS---------------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL 77 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCc---------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHH
Confidence 3445566677666543321 455889999999988 7779999999999999 7 679999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 100 SQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 100 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
|..++++|+|++|..+++.+++.+|+|..+......+...+.+
T Consensus 78 Av~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k 120 (152)
T 1pc2_A 78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 120 (152)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888776644
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.30 E-value=4e-12 Score=95.73 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=88.0
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..++..|+|++|+..|.+++.+.|.+ ..++.++|.++..+|++++|+.+++++++++
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY---------------IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5667889999999999999999999999997654 4558999999999999999999999999999
Q ss_pred CccHHHHHHHHHH--HHhhCCHHHHHHHHH-----------HHHhcCCCc
Q 031461 90 PLNVKALYRRSQA--HLKTSELEKAEADIK-----------RALTIDPNN 126 (159)
Q Consensus 90 ~~~~~~~~~~~~~--~~~~~~~~~A~~~~~-----------~al~~~p~~ 126 (159)
|++..++..++.+ +...|++++|+..++ +++.+.|+.
T Consensus 105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 9999999999998 899999999999999 888877754
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.30 E-value=1.1e-10 Score=70.98 Aligned_cols=88 Identities=28% Similarity=0.350 Sum_probs=80.8
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++...|.++.+...++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999988888887
Q ss_pred HHHHHHHH
Q 031461 139 KQREYAKY 146 (159)
Q Consensus 139 ~~~~~~~~ 146 (159)
..++..+.
T Consensus 89 ~~~~~~~A 96 (125)
T 1na0_A 89 KQGDYDEA 96 (125)
T ss_dssp HTTCHHHH
T ss_pred HhcCHHHH
Confidence 77665544
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.30 E-value=4.2e-12 Score=91.62 Aligned_cols=103 Identities=10% Similarity=0.002 Sum_probs=57.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+..+|..++..|+|++|+..|.+++.+.|.+ ..+++++|.++..+|++++|+.++++++.++|
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKN---------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 367889999999999999999999999997765 45699999999999999999999999999999
Q ss_pred ccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcHH
Q 031461 91 LNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRV 128 (159)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 128 (159)
+++.++..++.+ ....+..+.+...|.+++...|+++.
T Consensus 296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999998 45567788899999999999998764
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.29 E-value=4.6e-11 Score=73.35 Aligned_cols=95 Identities=13% Similarity=0.116 Sum_probs=82.2
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-------HHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-------RVVKL 131 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~ 131 (159)
...+..+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|.+++...|.+ ..+..
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999999999999998877 77888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031461 132 VYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
.++.+....++..+... .|.++
T Consensus 84 ~la~~~~~~~~~~~A~~-~~~~~ 105 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIH-FYNKS 105 (131)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHhccHHHHHH-HHHHH
Confidence 88888877766655432 44443
No 165
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.27 E-value=1.2e-10 Score=81.82 Aligned_cols=109 Identities=12% Similarity=-0.008 Sum_probs=86.3
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 89 (159)
..+..|..+++.++|++|+.+|..++..... .+...+++++|.++..+|++++|+.++++++...
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~ 203 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG 203 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence 5677788888888888888888765543100 0113468899999999999999999999998544
Q ss_pred Cc-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 90 PL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 90 ~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
|. .+.+++++|.++..+|+.++|...|++++..+|+ +.+...+.
T Consensus 204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 55 6779999999999999999999999999999998 77666554
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.26 E-value=1.5e-11 Score=75.21 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=70.7
Q ss_pred hhhCHHHHHHHHHHHhhc---CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Q 031461 71 KLEDYSETSSLCTKVLEL---EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQ 147 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 147 (159)
.+|++++|+.++++++.+ +|+++.+++.+|.++...|++++|+..|++++.++|+++.+...++.+...+++..+..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999999 69999999999999999999999999999999999999999999999998888876654
Q ss_pred HHHHHHH
Q 031461 148 AEIFGTM 154 (159)
Q Consensus 148 ~~~~~~~ 154 (159)
. .+.+.
T Consensus 82 ~-~~~~a 87 (117)
T 3k9i_A 82 E-LLLKI 87 (117)
T ss_dssp H-HHHHH
T ss_pred H-HHHHH
Confidence 3 44443
No 167
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.25 E-value=6.7e-10 Score=82.63 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=96.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.++........+..+|+|++|+..|++++......-..+ .+....++.++|.+|..+|+|++|+.++++++.+
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i 358 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP 358 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 344555556677889999999999999998754321111 1334677999999999999999999999999965
Q ss_pred C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHH
Q 031461 89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTI-----DPNNRVVKLVYMELKD 138 (159)
Q Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~ 138 (159)
. |+....+.++|.+|..+|++++|...|++|+.+ -|+++.+...+..+..
T Consensus 359 ~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 359 YRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE 421 (429)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 2 445778999999999999999999999999866 6888877766555443
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=8.2e-10 Score=84.84 Aligned_cols=115 Identities=11% Similarity=0.013 Sum_probs=104.8
Q ss_pred HHHHHhhhHHHHccc----------HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--CHHHH
Q 031461 11 ERKKHDGNLLFRAGK----------YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSET 78 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A 78 (159)
.....+|......++ +++|+.++.+++...|.+ ..+|..++.+...++ +++++
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~---------------y~aW~hR~w~l~~l~~~~~~~e 128 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARE 128 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcccccHHHH
Confidence 446667777777777 999999999999997765 456999999999999 77999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
+.+++++++++|.+..+|..++.++...| .++++++++.+++..+|.|.+++.....+...+
T Consensus 129 l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999999999999999999999998775
No 169
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.23 E-value=2.4e-10 Score=68.72 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=64.8
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
++.++..|..++..++|..|+..|..|+...+...... .....++.++|.|+.++|+++.|+..+++++.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45688999999999999999999999999865432111 0124567788888888888888888888888888
Q ss_pred CccHHHHHHHH
Q 031461 90 PLNVKALYRRS 100 (159)
Q Consensus 90 ~~~~~~~~~~~ 100 (159)
|+++.+..+++
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 88877776665
No 170
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=3.6e-10 Score=76.20 Aligned_cols=129 Identities=12% Similarity=-0.028 Sum_probs=89.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc-----------cCCC--ChHH-----HHHHHHHHHHHHhhHHHHHhh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-----------HHSF--TDDE-----KHQANGLRLSCYLNNAACKLK 71 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----------~~~~--~~~~-----~~~~~~~~~~~~~~~a~~~~~ 71 (159)
+..+...|..++..+++++|+.+|.++++.... .... +.+. ..-...-...++.++|.+|..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 456777888888888888888888888764211 0000 1000 000122224467788888877
Q ss_pred ----hhCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 72 ----LEDYSETSSLCTKVLELEP--LNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 72 ----~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.+++++|+.++++++...| .++.+++.+|.+|.. .+++++|+.+|+++..+ |.++.+...++.+...
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 7788888888888888887 458888888888888 78888888888888887 6666677777776643
No 171
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.22 E-value=1.1e-09 Score=76.07 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=68.9
Q ss_pred HHHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHH
Q 031461 11 ERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLC 82 (159)
Q Consensus 11 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~ 82 (159)
..+...|..+.. .+++++|+.+|.++++.. + ..++.++|.++.. .+++++|+.++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 101 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y---------------SNGCHLLGNLYYSGQGVSQNTNKALQYY 101 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHhCCCCcccCHHHHHHHH
Confidence 446667777777 788888888888877763 1 2346666666666 66666666666
Q ss_pred HHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 83 TKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
++++..+ ++.+++.+|.+|.. .+++++|+.+|++++... ++.+...++.+..
T Consensus 102 ~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 102 SKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence 6666653 56666666666666 666666666666666654 3444444444443
No 172
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=3.5e-11 Score=78.72 Aligned_cols=111 Identities=12% Similarity=-0.008 Sum_probs=89.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChH--------------HH------HHHHHHHHHHHhhHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDD--------------EK------HQANGLRLSCYLNNAACK 69 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--------------~~------~~~~~~~~~~~~~~a~~~ 69 (159)
+..+...|..+...|++++|+..|.+++...| ++..... .. ....+-...++.++|.++
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~ 118 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQY 118 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 56688889999999999999999999888765 3211000 00 011122356789999999
Q ss_pred hhhhCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 70 LKLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
...|++++|+..++++++.+|++ +.++..+|.++...|++++|+..|++++.
T Consensus 119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999976 66999999999999999999999999874
No 173
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=2.8e-10 Score=76.77 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=59.8
Q ss_pred HHHHhhHHHHHhhhh----CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC--cHH
Q 031461 59 LSCYLNNAACKLKLE----DYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN--NRV 128 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~--~~~ 128 (159)
..+++++|.+|.. + ++++|+.++++++. +.++.+++.+|.+|.. .+++++|+.+|+++....|. ++.
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 4557788888877 6 78888888888854 4678888888888877 78888888888888888773 477
Q ss_pred HHHHHHHHHHH
Q 031461 129 VKLVYMELKDK 139 (159)
Q Consensus 129 ~~~~~~~~~~~ 139 (159)
+...++.+...
T Consensus 127 a~~~Lg~~y~~ 137 (212)
T 3rjv_A 127 AQMLLGLIYAS 137 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 77777777654
No 174
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.21 E-value=3.6e-10 Score=74.68 Aligned_cols=109 Identities=14% Similarity=0.020 Sum_probs=90.3
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..+..+...|..+...|++++|+.+|.+++.+....+... .....++.++|.++..+|++++|+.++++++.
T Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP--------LAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH--------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999966443220 12456789999999999999999999999997
Q ss_pred cCCc------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 88 LEPL------NVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 88 ~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
+.+. ...++..+|.++...|++++|...+++++.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6421 145578999999999999999999999987743
No 175
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.19 E-value=7e-10 Score=66.64 Aligned_cols=79 Identities=19% Similarity=0.107 Sum_probs=70.2
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcC-------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELE-------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
.+.+|..++..++|..|+.+++.|++.. +..+..+..+|.+++.+|+++.|+..+++++.++|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 7899999999999999999999999863 356888999999999999999999999999999999998877776
Q ss_pred HHHHHH
Q 031461 135 ELKDKQ 140 (159)
Q Consensus 135 ~~~~~~ 140 (159)
.+...+
T Consensus 88 ~~~~~~ 93 (104)
T 2v5f_A 88 YFEYIM 93 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 176
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.18 E-value=1.4e-09 Score=78.65 Aligned_cols=128 Identities=12% Similarity=0.106 Sum_probs=92.5
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
.+..+...|..++..|+++.|+..+.+++.+.+..+.. .....++.++|.++...|++++|+..+++++.+
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34456677777888888888888888888876654321 122445778899999999999999999999876
Q ss_pred C--------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHHHHH
Q 031461 89 E--------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN-----RVVKLVYMELKDKQREYAK 145 (159)
Q Consensus 89 ~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~ 145 (159)
. |....++..+|.++...|++++|...+.+++.+.|.. ..+...++.+....++..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 4 3456677889999999999999999999998887642 2345555555555444433
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=9.3e-10 Score=84.56 Aligned_cols=116 Identities=9% Similarity=-0.059 Sum_probs=100.5
Q ss_pred HHHHHhhhHHHHcccH-HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC----------HHHHH
Q 031461 11 ERKKHDGNLLFRAGKY-WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED----------YSETS 79 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~ 79 (159)
.............|.+ ++|+..+.+++...|.+ ..+|+.++.+...+++ +++++
T Consensus 29 ~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~---------------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL 93 (567)
T 1dce_A 29 QSATQAVFQKRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAEL 93 (567)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHhcccccchhhhhhhHHHHH
Confidence 3333344444555544 67899999999997765 5669999999999998 99999
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 80 SLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 80 ~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
.++++++..+|.+..+|+.++-++...+ ++++++.++.+++.++|.|..++...+-+...++
T Consensus 94 ~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 94 GFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence 9999999999999999999999999999 7799999999999999999999999998887776
No 178
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.17 E-value=6.3e-10 Score=65.57 Aligned_cols=78 Identities=21% Similarity=0.142 Sum_probs=66.0
Q ss_pred HHHHhhHHHHHhhhhC---HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLED---YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYME 135 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 135 (159)
..++..+|.+++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++..+|.++........
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~~ 85 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIES 85 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 3457788888865555 7999999999999999999999999999999999999999999999999986544333333
Q ss_pred H
Q 031461 136 L 136 (159)
Q Consensus 136 ~ 136 (159)
|
T Consensus 86 I 86 (93)
T 3bee_A 86 I 86 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.16 E-value=3.2e-10 Score=82.83 Aligned_cols=95 Identities=22% Similarity=0.206 Sum_probs=84.7
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhh----------------cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLE----------------LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
...+.++|..+...|+|++|+..|++++. ++|.++.+++++|.++..+|++++|+.++++++.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 44588999999999999999999999998 78888999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 123 DPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 123 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
+|++..++..++.+...+++..+... .|.++
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~A 333 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALA-DLKKA 333 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHH-HHHHH
Confidence 99999999999999988877766533 44443
No 180
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.15 E-value=1.5e-10 Score=68.92 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+...|..++..|+|++|+..|.+++.+.|.++ .++.++|.++..+|++++|+..+++++.+.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV---------------GTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 56788999999999999999999999999987754 359999999999999999999999999987
Q ss_pred Ccc--HHHHHHHHHHHHhhCC
Q 031461 90 PLN--VKALYRRSQAHLKTSE 108 (159)
Q Consensus 90 ~~~--~~~~~~~~~~~~~~~~ 108 (159)
|.. ..+...+...+...+.
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 72 REEGTQKDLSELQDAKLKAEG 92 (100)
T ss_dssp HHHSCHHHHHHHHHHHHHHHT
T ss_pred hcCCchhHHHHHHHHHHHccc
Confidence 654 4444555555554443
No 181
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.15 E-value=5.2e-10 Score=71.94 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=67.4
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSEL----------EKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.+.+.|++|+..++++++++|+++.+++++|.++..++++ ++|+..|++++.++|++..++..++.+...
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999886 499999999999999999999999999987
Q ss_pred HH
Q 031461 140 QR 141 (159)
Q Consensus 140 ~~ 141 (159)
++
T Consensus 93 lg 94 (158)
T 1zu2_A 93 FA 94 (158)
T ss_dssp HH
T ss_pred hc
Confidence 75
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.14 E-value=1e-09 Score=83.28 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=66.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP 90 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~ 90 (159)
..+...|..+...|+++.|...|.+++...|.++. .+|.+.|.+....|++++|...|+++++..|
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 44556677778889999999999999987554321 2355555555555555555555555555555
Q ss_pred ccHHHHHHHHHH-HHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQA-HLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 91 ~~~~~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.....+...+.+ +...|++++|...|++++...|+++.++..+..+...
T Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~ 437 (530)
T 2ooe_A 388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 437 (530)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh
Confidence 444444444433 2335555555555555555555555555555444433
No 183
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=2.1e-09 Score=76.61 Aligned_cols=116 Identities=12% Similarity=-0.090 Sum_probs=92.4
Q ss_pred HHHHHhhhHHHHcc--cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHH----hhh---hCHHHHHHH
Q 031461 11 ERKKHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACK----LKL---EDYSETSSL 81 (159)
Q Consensus 11 ~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~---~~~~~A~~~ 81 (159)
.....+|.+....+ .+++++.++..++...|.+. .++..++.+. ..+ +++++++.+
T Consensus 68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---------------~aW~~R~~iL~~~~~~l~~~~~~~~EL~~ 132 (306)
T 3dra_A 68 TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---------------QIWNYRQLIIGQIMELNNNDFDPYREFDI 132 (306)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------------HHHHHHHHHHHHHHHHTTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------------HHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence 34566788888888 99999999999999877653 3477777776 555 678888888
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhhCCHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKTSELE--KAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+++++..+|.+..+|..++-++...|.++ +++.++.+++..+|.|.+++.....+...++
T Consensus 133 ~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 133 LEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888 8888888888888888888887777765554
No 184
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.13 E-value=1.8e-09 Score=76.93 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=95.8
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHH--HHHHHHHHHhhcCCccHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYS--ETSSLCTKVLELEPLNVKALYRRSQ 101 (159)
Q Consensus 24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~ 101 (159)
+++++++.++.+++..+|.+ ..++..++.+...+|.++ +++.+++++|..+|.+..+|..++.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkn---------------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ 188 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKN---------------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF 188 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 78999999999999998776 455999999999999998 9999999999999999999999999
Q ss_pred HHHhhCC------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 102 AHLKTSE------LEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 102 ~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
++...+. +++++.++.+++..+|+|.+++..+.-+....++
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 9999998 9999999999999999999999999988776554
No 185
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.12 E-value=8e-09 Score=74.66 Aligned_cols=110 Identities=13% Similarity=0.000 Sum_probs=98.8
Q ss_pred HHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCCccHHHHHH
Q 031461 20 LFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLNVKALYR 98 (159)
Q Consensus 20 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~ 98 (159)
....+..++|+.++.++|.++|.+ ..+++.++.+...++ .+++++.+++.++..+|.+..+|..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~---------------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAH---------------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 334456678999999999997775 566999999999999 5999999999999999999999999
Q ss_pred HHHHHHhh-C-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 99 RSQAHLKT-S-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 99 ~~~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
++.++... + ++++++..+.+++..+|.|..++....-+...++...
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 99999998 8 9999999999999999999999999999888877655
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.10 E-value=4.2e-09 Score=75.67 Aligned_cols=109 Identities=10% Similarity=-0.059 Sum_probs=84.8
Q ss_pred HHHHcccHH-HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhC----------HHHHHHHHHHHhh
Q 031461 19 LLFRAGKYW-RASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLED----------YSETSSLCTKVLE 87 (159)
Q Consensus 19 ~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~ 87 (159)
...+.|.++ +|+.++.+++.++|.+ ..+++.++.+...++. +++++.+++.++.
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~---------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~ 102 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR 102 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence 334567665 8999999999997765 4557777777766665 6788888888888
Q ss_pred cCCccHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQRE 142 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 142 (159)
.+|.+..+|..++-++..++ .+++++.++.+++..+|.|..++....-+...++.
T Consensus 103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence 88888888888888888888 47888888888888888888888877777665543
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.10 E-value=1.5e-09 Score=76.19 Aligned_cols=129 Identities=13% Similarity=0.000 Sum_probs=104.3
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE- 89 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 89 (159)
+.....+..+...|+|++|...|..++...|.+ . +.+.+|.++...++|++|+..++.++...
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---------------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEH---------------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---------------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---------------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 445667888999999999999998877654432 2 58899999999999999999999887764
Q ss_pred Ccc-HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 90 PLN-VKALYRRSQAHLKTSELEKAEADIKRALTID--PN-NRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
|.. ..+++.+|.++..+|++++|+.+|++++.-. |. ...+...++.+...+++.++... .|.++..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-~l~~a~a 236 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-LLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence 322 4589999999999999999999999998544 65 66788999999999988766643 6666543
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.09 E-value=2.5e-08 Score=71.66 Aligned_cols=100 Identities=12% Similarity=0.024 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh--CHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE--DYSETSSLCTKVLELEPLNVKALYRRSQAH 103 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 103 (159)
+++++.++..++...|.+ ..+|..++.+...++ .+++++.++++++..+|.|..+|..++.+.
T Consensus 90 l~~EL~~~~~~L~~~PKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl 154 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKS---------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA 154 (331)
T ss_dssp HHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 789999999999987766 455999999999998 499999999999999999999999999999
Q ss_pred HhhCC-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 104 LKTSE-LEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 104 ~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
...|. +++++.++.+++..+|.|.+++.....+...+
T Consensus 155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 99999 69999999999999999999999999988777
No 189
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.08 E-value=1.3e-09 Score=76.83 Aligned_cols=112 Identities=10% Similarity=-0.098 Sum_probs=89.1
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC--------------CChH-----HHHHHHHHHHHHHhhHHHHHh
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS--------------FTDD-----EKHQANGLRLSCYLNNAACKL 70 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~~~a~~~~ 70 (159)
...+...|..+...|++++|+..|.+++...|.... .... .-....+-...+++++|.++.
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 567888899999999999999999888776553110 0000 001112223567899999999
Q ss_pred hhhCHHHHHHHHHHHhhcCCcc--HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 71 KLEDYSETSSLCTKVLELEPLN--VKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..|++++|+..+.++++.+|++ ..++..+|.++...|+.++|...|++++.
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999998 89999999999999999999999999874
No 190
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=6.2e-09 Score=75.22 Aligned_cols=130 Identities=10% Similarity=-0.004 Sum_probs=101.7
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...++.....|..++..|+++.|+..+.+++...+.... .....++.++|.++...|++++|...+++++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 80 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTE 80 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----------hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677888999999999999999999999998653211 1234568899999999999999999999999
Q ss_pred hcCCcc------HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHHHHHHHH
Q 031461 87 ELEPLN------VKALYRRSQAHLKTSELEKAEADIKRALTID--------PNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 87 ~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+.|.. ..++..+|.++...|++++|+..+++++.+. |....+...++.+....++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 876543 3457889999999999999999999999875 22344556666666666555444
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.03 E-value=2.3e-09 Score=64.96 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 76 SETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 76 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
.+|+..+++++..+|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.+....++..+.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999998887766554
No 192
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.02 E-value=8.9e-09 Score=78.09 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=91.2
Q ss_pred HHHHHhhhHHHH-------cccHH-------HHHHHHHHHHH-HhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH
Q 031461 11 ERKKHDGNLLFR-------AGKYW-------RASKKYEKAAK-IIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 75 (159)
Q Consensus 11 ~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 75 (159)
+.+...|..+.. .|+++ +|+..|.+++. ..|.+ ..++..+|.++...|++
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~---------------~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---------------MLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC---------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHhcCCH
Confidence 345556666664 68876 99999999997 66654 45689999999999999
Q ss_pred HHHHHHHHHHhhcCCccH-HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 76 SETSSLCTKVLELEPLNV-KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 76 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
++|...|++++.+.|.++ .+|...|.++...|++++|...|.+++...|.+..+.....
T Consensus 338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a 397 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHH
T ss_pred HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 999999999999999885 69999999999999999999999999999888765554433
No 193
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=99.00 E-value=2.9e-08 Score=61.18 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=74.6
Q ss_pred HHHHhhHHHHHhhhhCHHH---HHHHHHHHhhcC-C-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSE---TSSLCTKVLELE-P-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
..+.+++|.+..+.+.... ++..++..++.+ | ..-.++|.+|..++++|+|++|..++..++..+|+|..+....
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4557899999999887766 999999999987 5 5789999999999999999999999999999999999999998
Q ss_pred HHHHHHHHH
Q 031461 134 MELKDKQRE 142 (159)
Q Consensus 134 ~~~~~~~~~ 142 (159)
..+..++.+
T Consensus 115 ~~i~~~i~k 123 (126)
T 1nzn_A 115 RLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888876654
No 194
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.97 E-value=1.8e-08 Score=72.86 Aligned_cols=116 Identities=11% Similarity=-0.100 Sum_probs=103.6
Q ss_pred HHHHHhhhHHHHcc-cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-h-CHHHHHHHHHHHhh
Q 031461 11 ERKKHDGNLLFRAG-KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-E-DYSETSSLCTKVLE 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~ 87 (159)
.....+|.+....+ .+++++.++..++...|.+ ..++..++.+...+ + ++++++.++++++.
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKn---------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~ 153 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKS---------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34566777887888 5999999999999997765 45699999999888 7 89999999999999
Q ss_pred cCCccHHHHHHHHHHHHhhCCHH--------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELE--------KAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
.+|.+..+|..++-++...|.++ +++.++.+++..+|.|.+++.....+...+.
T Consensus 154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999988 9999999999999999999999998876654
No 195
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.94 E-value=1.4e-08 Score=76.23 Aligned_cols=78 Identities=17% Similarity=0.031 Sum_probs=67.4
Q ss_pred HHHHhhHHHHHhh----hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCC---cH
Q 031461 59 LSCYLNNAACKLK----LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPN---NR 127 (159)
Q Consensus 59 ~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~---~~ 127 (159)
..+++++|.++.. .+++++|+.++++++... ++.+++++|.+|.. .+++++|+.+|++++...|+ ++
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 440 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE 440 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence 4568899999998 899999999999999864 68899999999998 89999999999999999954 77
Q ss_pred HHHHHHHHHHH
Q 031461 128 VVKLVYMELKD 138 (159)
Q Consensus 128 ~~~~~~~~~~~ 138 (159)
.+...++.+..
T Consensus 441 ~a~~~l~~~~~ 451 (490)
T 2xm6_A 441 NRNITEKKLTA 451 (490)
T ss_dssp HHHHHHTTSCH
T ss_pred HHHHHHHhcCH
Confidence 77777776654
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.93 E-value=8.2e-09 Score=77.96 Aligned_cols=114 Identities=11% Similarity=-0.009 Sum_probs=91.2
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+..+..+..+|.++..+|+|++|+.+|.+++.+....-..+ .+.....+.|+|.+|..+|+|++|+..+++|+
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44677889999999999999999999999999864321111 12346779999999999999999999999998
Q ss_pred hc-----CCcc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 87 EL-----EPLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 87 ~~-----~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
.+ .|++ ....-.+++++..++.+++|...|+++..-.-+|.
T Consensus 421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~ 469 (490)
T 3n71_A 421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ 469 (490)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 65 3444 55667899999999999999999999876543443
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.93 E-value=2.7e-08 Score=62.65 Aligned_cols=89 Identities=8% Similarity=-0.067 Sum_probs=66.6
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHHHHHHhhcCCc
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~~~ 91 (159)
.|..+...+.++.|+.+|.++.+.. + ..+.+++|.+|.. .+++++|+.+++++... .
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g 91 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN--S---------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N 91 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC--C---------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence 5666666667777888888877751 1 3447788888877 77888888888888776 5
Q ss_pred cHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcC
Q 031461 92 NVKALYRRSQAHLK----TSELEKAEADIKRALTID 123 (159)
Q Consensus 92 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~ 123 (159)
++.+.+++|.+|.. .+++++|+.+|+++....
T Consensus 92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 67788888888887 788888888888887763
No 198
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.82 E-value=1.5e-07 Score=70.29 Aligned_cols=106 Identities=10% Similarity=-0.031 Sum_probs=65.1
Q ss_pred HHHHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh----hCHHHHHHHHHH
Q 031461 12 RKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL----EDYSETSSLCTK 84 (159)
Q Consensus 12 ~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~ 84 (159)
.+..+|..+...| ++.+|+..|.++....+.. ...++++|.+|... +++++|+.+|++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---------------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---------------AQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---------------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 4567788888888 9999999999999875543 22235555555444 456666666666
Q ss_pred HhhcCCccHHHHHHHHHH-H--HhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 85 VLELEPLNVKALYRRSQA-H--LKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 85 al~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
+. |+++.+++++|.+ + ...+++++|+.+|+++... .++.+...++.+.
T Consensus 243 aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 243 IA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLY 293 (452)
T ss_dssp HG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred Hc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 55 5555666666655 3 3455555566555555532 2445555555444
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=4.9e-08 Score=71.69 Aligned_cols=118 Identities=17% Similarity=0.102 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC------------------ChHHHHH-------------HH
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF------------------TDDEKHQ-------------AN 55 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~-------------~~ 55 (159)
......+...|..++..|+|++|+.+|.+++...+..+.. ..+.... ..
T Consensus 52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 131 (434)
T 4b4t_Q 52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV 131 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 3445678889999999999999999999888865442111 0000000 01
Q ss_pred HHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 56 GLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 56 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
.++..++.++|.++...|+|++|...+++++.. .|....++...|.+|...|++++|...+++++...+
T Consensus 132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 234567889999999999999999999999865 344578999999999999999999999999987743
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.79 E-value=2e-07 Score=68.40 Aligned_cols=86 Identities=17% Similarity=0.126 Sum_probs=66.0
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcC------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC------CCcH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELE------PLNVKALYRRSQAHLKTSELEKAEADIKRALTID------PNNR 127 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~ 127 (159)
.+..+++.++...|++++|+.+++.++... +.....+.++|.+|...|+|++|...+.+++... |...
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 456778899999999999999999998653 3457889999999999999999999999987652 2224
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 031461 128 VVKLVYMELKDKQREYAK 145 (159)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (159)
.+......+...++...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAK 193 (434)
T ss_dssp HHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHH
Confidence 555666666555544443
No 201
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.78 E-value=4.4e-07 Score=68.16 Aligned_cols=107 Identities=9% Similarity=-0.061 Sum_probs=64.3
Q ss_pred HHHHHHhhhHHHH----cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh----hhCHHHHHHH
Q 031461 10 CERKKHDGNLLFR----AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK----LEDYSETSSL 81 (159)
Q Consensus 10 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~ 81 (159)
++.+...|..++. .++++.|+.+|.++++.. + ..+++.+|.+|.. .+++++|+.+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~---------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--Y---------------TPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--C---------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4556677777777 788888888888887641 1 2335556666665 5666666666
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
+++++.. .++.+++.+|.+|.. .+++++|+.+|+++... +++.+...++.+.
T Consensus 102 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 157 (490)
T 2xm6_A 102 YKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAY 157 (490)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 6666543 355556666666655 55666666666665443 3444444444444
No 202
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.77 E-value=1.7e-07 Score=77.85 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=89.5
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP- 90 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~- 90 (159)
.+...|..++..|+|++|+.+|.++- .|..+|.++.++|++++|+..+.++....+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence 45679999999999999999999852 188999999999999999999998855443
Q ss_pred ------------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 91 ------------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 91 ------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
.+++.+..++..|...|.|++|+..++.++.++|.+......++.+..+.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 24455667888899999999999999999999999999998888886554
No 203
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.76 E-value=8.2e-08 Score=71.29 Aligned_cols=104 Identities=14% Similarity=0.082 Sum_probs=66.5
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEP- 90 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~- 90 (159)
.+...|+.++..|.|++|+.+|.++ +. |..+|.|+.++|+|++|+..+.++. +|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~ 178 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKAN--STR 178 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence 4556677777777777777777654 11 6677777777777777777777662 22
Q ss_pred --------------------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 91 --------------------------LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 91 --------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
.++.-...++.+|...|.+++|+..++.++.++|.+..+...++.+..+.
T Consensus 179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 12222334567899999999999999999999999999999998876544
No 204
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.76 E-value=3.2e-07 Score=56.77 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=72.9
Q ss_pred HHHHhhHHHHHhhhh---CHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLE---DYSETSSLCTKVLELEPL-NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
..+.++.|.+..+.+ +..+++..++..++.+|. .-+++|.+|..++++|+|++|..+...++..+|+|..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 345778888877766 456789999999998884 5899999999999999999999999999999999999999988
Q ss_pred HHHHHHHH
Q 031461 135 ELKDKQRE 142 (159)
Q Consensus 135 ~~~~~~~~ 142 (159)
.|..++.+
T Consensus 120 ~Ie~ki~k 127 (134)
T 3o48_A 120 MVEDKIQK 127 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877765
No 205
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.74 E-value=1.7e-07 Score=70.05 Aligned_cols=101 Identities=14% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHhhhHHHHc----ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHH-H--hhhhCHHHHHHHHHHHh
Q 031461 14 KHDGNLLFRA----GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAAC-K--LKLEDYSETSSLCTKVL 86 (159)
Q Consensus 14 ~~~g~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al 86 (159)
...|..+... +++++|+.+|.++. +.++ .+++++|.+ + ...+++++|+.++++++
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~---------------~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYP---------------ASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGST---------------HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCH---------------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4556665443 57778888887776 3332 236666666 3 45667777777777766
Q ss_pred hcCCccHHHHHHHHHHHHhhC-----CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTS-----ELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
... ++.+++.+|.+|. .| ++++|+.+|+++. |.++.+...++.+..
T Consensus 279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR 329 (452)
T ss_dssp HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 443 6666777777666 44 7777777777766 666666666666553
No 206
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.74 E-value=1.5e-07 Score=66.05 Aligned_cols=89 Identities=11% Similarity=0.042 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh-----hCHHHHHHHHHHHhhcCCcc-HHHHHH
Q 031461 25 KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL-----EDYSETSSLCTKVLELEPLN-VKALYR 98 (159)
Q Consensus 25 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~~~~-~~~~~~ 98 (159)
....|...++++++++|.. +...++..+|..|... |+.++|..+|++++.++|+. +...+.
T Consensus 178 ~l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~ 244 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHIT 244 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHH
Confidence 3577888888999887762 1256799999999995 99999999999999999975 999999
Q ss_pred HHHHHHhh-CCHHHHHHHHHHHHhcCCCc
Q 031461 99 RSQAHLKT-SELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 99 ~~~~~~~~-~~~~~A~~~~~~al~~~p~~ 126 (159)
.|..+... |+++.|...+++++...|..
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999885 99999999999999988763
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.72 E-value=8.8e-07 Score=64.30 Aligned_cols=119 Identities=10% Similarity=-0.052 Sum_probs=86.5
Q ss_pred HHHhhhHHHHc---ccHHHHHHHHHHHHHHhcccCC-----------------CChHHHHHH------------HHHHHH
Q 031461 13 KKHDGNLLFRA---GKYWRASKKYEKAAKIIEFHHS-----------------FTDDEKHQA------------NGLRLS 60 (159)
Q Consensus 13 ~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~~~-----------------~~~~~~~~~------------~~~~~~ 60 (159)
+.-+|..++.. .....|+.+|+++++++|..+. ........+ .+....
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 44566666654 4568999999999999886321 111111111 011122
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
++..+|..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|+..|.+|+.++|..+ ...+.
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 3445677777889999999999999999974 67889999999999999999999999999999875 34443
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.72 E-value=4.5e-07 Score=56.93 Aligned_cols=94 Identities=15% Similarity=-0.015 Sum_probs=80.8
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQA 102 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 102 (159)
.+++++|+.+|.++.+... +. . . +|.+|...+.+++|+.+++++... .++.+.+++|.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~--~~-------------a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~ 66 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE--MF-------------G--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC--TT-------------H--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC--Hh-------------h--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 3689999999999998742 21 1 3 999999999999999999999987 689999999999
Q ss_pred HHh----hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 103 HLK----TSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 103 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|.. .+++++|+.+|+++... .++.+...++.+...
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 999 89999999999999876 678888888887755
No 209
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.68 E-value=6e-07 Score=56.23 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=72.4
Q ss_pred HHHHhhHHHHHhhhhC---HHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLED---YSETSSLCTKVLELEP-LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYM 134 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 134 (159)
..+.++.|.+..+... ..+++..++..++..| ..-+++|.+|..++++|+|++|..+.+.+++.+|+|..+.....
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 118 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4457788888888664 5578899999999888 46889999999999999999999999999999999999998888
Q ss_pred HHHHHHHH
Q 031461 135 ELKDKQRE 142 (159)
Q Consensus 135 ~~~~~~~~ 142 (159)
.+..++.+
T Consensus 119 ~Ie~~i~k 126 (144)
T 1y8m_A 119 MVEDKIQK 126 (144)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776643
No 210
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.68 E-value=8.4e-07 Score=63.10 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=90.9
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc-
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL- 91 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~- 91 (159)
+.-.|.++...|++++|+..+.+++...+. .. ...++..++.++..+|+++.|...+++..+.+|+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~------------~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~ 169 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEA-EG------------TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT 169 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 457889999999999999999999876541 11 1566889999999999999999999999999993
Q ss_pred ---cHHHHHHH--HHHHHhhC--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 031461 92 ---NVKALYRR--SQAHLKTS--ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQA 148 (159)
Q Consensus 92 ---~~~~~~~~--~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 148 (159)
....+..+ |.+....| ++.+|...|+++....|+.......+. +...+++..+.+.
T Consensus 170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 23334444 44466667 999999999999888886333333333 6666666666544
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=4.7e-07 Score=57.68 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=65.8
Q ss_pred HHHHHHhhhHHHHcc---cHHHHHHHHHHHHHHh-cccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 10 CERKKHDGNLLFRAG---KYWRASKKYEKAAKII-EFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
.+..+..|+.+.+.+ +..+||.++..+++.. |. ....+++++|..+.++|+|++|+.+++.+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~--------------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--------------EQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc--------------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 466788899999888 7779999999999975 31 12567899999999999999999999999
Q ss_pred hhcCCccHHHHHHHHHH
Q 031461 86 LELEPLNVKALYRRSQA 102 (159)
Q Consensus 86 l~~~~~~~~~~~~~~~~ 102 (159)
++++|++..+..-+..+
T Consensus 98 L~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 98 LQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHH
Confidence 99999998876554433
No 212
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.62 E-value=5.9e-07 Score=63.87 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=81.1
Q ss_pred HHHHhhhHHHHcc--cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc-
Q 031461 12 RKKHDGNLLFRAG--KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL- 88 (159)
Q Consensus 12 ~~~~~g~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~- 88 (159)
.....|++.+..| ++.+|+..|.++....|.... ..++++ ++..+|++++|...++.++..
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------------~~lLln---~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------------QLGLLN---LHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------------HHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------------HHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence 3444565566666 999999999998765443100 122333 899999999999999988877
Q ss_pred ---------CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHH
Q 031461 89 ---------EPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLV 132 (159)
Q Consensus 89 ---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 132 (159)
+|+++.++.+++.+.+.+|+ +|.+.+.++...+|+++-+...
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 58899999999999999998 8999999999999999876543
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.50 E-value=1.6e-06 Score=50.78 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=60.4
Q ss_pred HHHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 10 CERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
++.+...|..++..++ ..+|...+.+++.++|.+ ..++..+|..++..|+|++|+.++++++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~---------------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN---------------EAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677888888876655 799999999999998887 4558899999999999999999999999
Q ss_pred hcCCccHH
Q 031461 87 ELEPLNVK 94 (159)
Q Consensus 87 ~~~~~~~~ 94 (159)
..+|.++.
T Consensus 71 ~~~p~~~~ 78 (93)
T 3bee_A 71 DSNDPNLD 78 (93)
T ss_dssp TCCCTTCC
T ss_pred hhCCCCcc
Confidence 99998533
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.47 E-value=2.4e-06 Score=71.16 Aligned_cols=93 Identities=11% Similarity=0.005 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+.....+...|..+...|++++|+..|.++ .+ ...|.+.|.++.++|+|++|++++..++
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD---------------~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD---------------PSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334556777788888888888888888765 12 2236677777777777777777776655
Q ss_pred hcCCc---------------------------cHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 87 ELEPL---------------------------NVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 87 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+..++ +...++..|..+...|+|++|+.+|.++
T Consensus 1162 k~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1162 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred hhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 44321 2334556777777777777777777665
No 215
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.44 E-value=9.2e-06 Score=52.21 Aligned_cols=116 Identities=9% Similarity=0.040 Sum_probs=88.0
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC-ChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF-TDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 89 (159)
+++....++..+.|+.|+-....++.+...++.. ++ .....++..+|..++..++|..|...|+++|+..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 6677788899999999999999999987665542 22 2345568899999999999999999999987542
Q ss_pred -Cc----------------------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 90 -PL----------------------NVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 90 -~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
+. ..+.-|.++.||..++++++|+..++.+-.- ...+.+...++++
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakL 164 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANL 164 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHH
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHH
Confidence 11 1267799999999999999999887654211 2345666666654
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.36 E-value=3.5e-06 Score=62.68 Aligned_cols=90 Identities=6% Similarity=-0.065 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhccc-CCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFH-HSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+..+..+...|.++..+|+|++|+.+|.+++.+.... ++. .+.....++++|.+|..+|++++|+..+++|
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~--------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS--------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC--------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4467788899999999999999999999999986431 221 1334777999999999999999999999999
Q ss_pred hhc-----CCccH---HHHHHHHHHHH
Q 031461 86 LEL-----EPLNV---KALYRRSQAHL 104 (159)
Q Consensus 86 l~~-----~~~~~---~~~~~~~~~~~ 104 (159)
+.+ .|+++ ..+.+++.+..
T Consensus 398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 398 FDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 865 45554 34444555543
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.31 E-value=3.7e-06 Score=62.62 Aligned_cols=82 Identities=12% Similarity=-0.038 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
+..+..+...|.++..+|+|++|+.+|.+++.+....-..+ .+.....++|+|.+|..+|++++|+..+++|+
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34577888999999999999999999999999864321111 12346779999999999999999999999998
Q ss_pred hc-----CCccHHH
Q 031461 87 EL-----EPLNVKA 95 (159)
Q Consensus 87 ~~-----~~~~~~~ 95 (159)
.+ .|+++..
T Consensus 410 ~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 410 AIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHTCTTCHHH
T ss_pred HHHHHHcCCCChHH
Confidence 65 4666543
No 218
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.18 E-value=1e-06 Score=65.47 Aligned_cols=66 Identities=12% Similarity=-0.005 Sum_probs=41.5
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKD 138 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 138 (159)
..+.++|.++...|.|++|..+|.++ ..+..+|.++..+|+|++|++.++++ +++.++.....+-.
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv 188 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 188 (449)
T ss_dssp --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHH
Confidence 36889999999999999999999876 46889999999999999999999999 35555555444333
No 219
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.10 E-value=0.0002 Score=52.53 Aligned_cols=112 Identities=13% Similarity=0.015 Sum_probs=92.2
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCC-------CChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHS-------FTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLC 82 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 82 (159)
-+.+...|......|+...|+..+..|+.+.....- +-...-..+...+..+...++..+...|++.+|+..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 345566676777789999999999999998643211 1123345567777888889999999999999999999
Q ss_pred HHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 83 TKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 83 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..++..+|.+-.++..+-.+++..|+..+|+..|+++..
T Consensus 195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988744
No 220
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.09 E-value=4e-05 Score=47.17 Aligned_cols=78 Identities=14% Similarity=0.024 Sum_probs=58.7
Q ss_pred HHHHHhhhHHHHcccHHH---HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 11 ERKKHDGNLLFRAGKYWR---ASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+..+..|+.+.+.++... +|.++...+.... | .....+++.+|..+.++|+|.+|..+++.+|+
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p-----------~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--K-----------EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--H-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--c-----------chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445666777777766655 8888877666420 1 12456789999999999999999999999999
Q ss_pred cCCccHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQ 101 (159)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (159)
++|+|..+.--...
T Consensus 103 ~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 103 TEPQNNQAKELERL 116 (126)
T ss_dssp HCTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHH
Confidence 99999887654433
No 221
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.05 E-value=0.00055 Score=53.80 Aligned_cols=141 Identities=9% Similarity=0.014 Sum_probs=94.1
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcc--------cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEF--------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
...+......|+++.|...|.+++...+. .|. +++.......-...+|...+.+....|..+.|...|.+|
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~-~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT-NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc-chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555666788999999999999986421 111 111111111122345777778878888999999999999
Q ss_pred hhc-CCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 86 LEL-EPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 86 l~~-~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
++. .+.....+...|.+-...+ +++.|...|+.+++..|+++..+..........++. +.-+..|.+...
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~ 532 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSID 532 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTT
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Confidence 887 4445667777777766665 488999999999999998888877776666555433 222445555443
No 222
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.92 E-value=0.00039 Score=43.01 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHhhhHHHHcc---cHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 11 ERKKHDGNLLFRAG---KYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+..+..|+.+.+.. +...+|.++...++..|.. ...+++.+|..+.++|+|.+|..+++.+++
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--------------~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--------------hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33455566666554 4457888888877754321 366789999999999999999999999999
Q ss_pred cCCccHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQ 101 (159)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (159)
++|+|..+.--...
T Consensus 107 ~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 107 HERNNKQVGALKSM 120 (134)
T ss_dssp TCTTCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHH
Confidence 99999887654443
No 223
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.90 E-value=0.00039 Score=43.56 Aligned_cols=76 Identities=18% Similarity=0.090 Sum_probs=58.1
Q ss_pred HHHHHhhhHHHHccc---HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 11 ERKKHDGNLLFRAGK---YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+..++.|+.+.+..+ -..+|.++...+...|.. ...+++.+|..+.++|+|.+|..+++.+++
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--------------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--------------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445666667766654 457888888877743321 356789999999999999999999999999
Q ss_pred cCCccHHHHHHHH
Q 031461 88 LEPLNVKALYRRS 100 (159)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (159)
++|+|..+.--..
T Consensus 106 ~eP~n~QA~~Lk~ 118 (144)
T 1y8m_A 106 HERNNKQVGALKS 118 (144)
T ss_dssp TCCCCHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 9999987755443
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=0.00017 Score=52.38 Aligned_cols=67 Identities=9% Similarity=-0.069 Sum_probs=56.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|..++..|++++|+..+.+++.+.++ ...+..+|.++...|++++|...+.+|++++|.
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS----------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3445666777889999999999999999643 334788999999999999999999999999997
Q ss_pred cHH
Q 031461 92 NVK 94 (159)
Q Consensus 92 ~~~ 94 (159)
.+.
T Consensus 343 ~~t 345 (372)
T 3ly7_A 343 ANT 345 (372)
T ss_dssp HHH
T ss_pred cCh
Confidence 764
No 225
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.82 E-value=0.00043 Score=54.41 Aligned_cols=116 Identities=10% Similarity=0.042 Sum_probs=87.8
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCC
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEP 90 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~ 90 (159)
.....++...+.|..+.|...|.+|+...+... ..+|...|..-...+ +++.|...|+.+++..|
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------------PDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 344445555667889999999999998733221 233555666655654 59999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN---NRVVKLVYMELKDKQR 141 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~ 141 (159)
+++..+...+......|+.+.|...|++++...|+ ...++..........+
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G 555 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG 555 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999884 4455665555555443
No 226
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.78 E-value=0.002 Score=40.78 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhh
Q 031461 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKT 106 (159)
Q Consensus 27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 106 (159)
+.-++.|++|+...|... ...+.....++...|.. ...++.++|...|+.++.+....++.|+..|+.-.+.
T Consensus 36 ~rlrd~YerAia~~Pp~k-------~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq 107 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDK-------YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ 107 (161)
T ss_dssp HHHHHHHHHHHHHSCGGG-------GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCccc-------cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 888899999999876542 12234455666677755 5679999999999999998877899999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCcHHH
Q 031461 107 SELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 107 ~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
|+.+.|.+.+.+++.+.|...+.
T Consensus 108 gnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 108 GNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TCHHHHHHHHHHHHHTTCBCHHH
T ss_pred ccHHHHHHHHHHHhccCCCcHHH
Confidence 99999999999999999976544
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.77 E-value=0.00042 Score=44.55 Aligned_cols=94 Identities=13% Similarity=0.066 Sum_probs=62.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh----------HHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD----------DEKHQANGLRLSCYLNNAACKLKLEDYSET 78 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 78 (159)
.++.+.-.|+.+|..++|..|...|.++|.....-+.... ........-...+.+.+|.|+.+++++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 4778889999999999999999999999987542111100 000000011235678899999999999999
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHH
Q 031461 79 SSLCTKVLELEPLNVKALYRRSQAH 103 (159)
Q Consensus 79 ~~~~~~al~~~~~~~~~~~~~~~~~ 103 (159)
+..++.+- ....+++.-..+|..|
T Consensus 142 i~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 142 IAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred HHHHhcCC-chhcCHHHHHHHHHHh
Confidence 99875532 2234566666666655
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.77 E-value=8.3e-05 Score=52.26 Aligned_cols=68 Identities=9% Similarity=0.026 Sum_probs=58.4
Q ss_pred hhCHHHHHHHHHHHhhcCCc--cHHHHHHHHHHHHhh-----CCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Q 031461 72 LEDYSETSSLCTKVLELEPL--NVKALYRRSQAHLKT-----SELEKAEADIKRALTIDPNN-RVVKLVYMELKDK 139 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~ 139 (159)
++....|...+++++.++|+ +..++..+|.+|... |+.++|...|++++.++|+. ..+....+.....
T Consensus 176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence 34578899999999999999 566999999999996 99999999999999999975 7777777775533
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0016 Score=51.59 Aligned_cols=62 Identities=21% Similarity=0.186 Sum_probs=56.2
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
..++..-+..++..|+|+-|+.++++++...|..-.+|+.++.+|..+|+|+.|+-.+..+-
T Consensus 337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 337 SDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34566668888889999999999999999999999999999999999999999999888874
No 230
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.38 E-value=0.014 Score=44.09 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=85.1
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh--------HHH-HHH----------------HHHHHHHHhhHHH
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--------DEK-HQA----------------NGLRLSCYLNNAA 67 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------~~~-~~~----------------~~~~~~~~~~~a~ 67 (159)
....+.-....|+.+.|...|.+|+.. |.+...-. +.. ..+ ......+|...+.
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~ 294 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN 294 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence 444555667789999999999999998 76431100 000 000 0111245666677
Q ss_pred HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC-CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS-ELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.....+..+.|...+.++ ...+.....+...|..-+..+ +.+.|...|+.++...|+++..+.........
T Consensus 295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 777788999999999999 443345667777777776666 69999999999999999988765555444433
No 231
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.21 E-value=0.012 Score=43.25 Aligned_cols=100 Identities=11% Similarity=-0.020 Sum_probs=78.3
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC----
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE---- 89 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 89 (159)
..+|..++..|+|.+|+..+.+.........+. .+...++......|..++++.++...+..+....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~---------~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~ 173 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDK---------NLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY 173 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence 367899999999999999999999876542211 4456678888899999999999999999886543
Q ss_pred Cc-c--HHHHHHHHHHHH-hhCCHHHHHHHHHHHHhc
Q 031461 90 PL-N--VKALYRRSQAHL-KTSELEKAEADIKRALTI 122 (159)
Q Consensus 90 ~~-~--~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~ 122 (159)
++ . +.....-|..+. ..++|..|...|-.++.-
T Consensus 174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 21 1 334455788888 899999999999988744
No 232
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0086 Score=44.49 Aligned_cols=100 Identities=12% Similarity=-0.043 Sum_probs=79.7
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc---C
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL---E 89 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~ 89 (159)
...+|..+++.|+++.|++.|.++......... ...++.....+++..++|..+..+++++-.+ .
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 567899999999999999999999887665433 2567888889999999999999999998654 2
Q ss_pred Ccc---HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Q 031461 90 PLN---VKALYRRSQAHLKTSELEKAEADIKRALTIDP 124 (159)
Q Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 124 (159)
+++ .......|.++...++|..|...|..++....
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 222 34455678888899999999999988765543
No 233
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.90 E-value=0.017 Score=43.81 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=69.6
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
.++..+|....-...+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+...+..+...
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35667888888888899999999999999999999999999999999999999999999998876677777777666554
No 234
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.82 E-value=0.099 Score=39.46 Aligned_cols=108 Identities=12% Similarity=-0.048 Sum_probs=78.7
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhh-CHHHHHHHHHHHhhcCCcc
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLE-DYSETSSLCTKVLELEPLN 92 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~~~~ 92 (159)
...+....+.+..+.|...|.++ . .+. .+ ..+|...|..-...+ +++.|...++.++...|+.
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~-----------~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-G-NEG---VG-----------PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CC-----------HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CC-----------hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 33344444567889999999998 3 222 11 234555566666566 6999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 141 (159)
+..+...++.....|+.+.|...|+++ +....++..........+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence 988888888889999999999999998 345566666666555554
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.094 Score=39.15 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=78.9
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh-
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE- 87 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~- 87 (159)
.+.....++..+...|++.+|.........-.... .+ ......++......+...++|..|...++++..
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45666788999999999999999998876542221 11 133456677888899999999999999998742
Q ss_pred --cCCcc----HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 88 --LEPLN----VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 88 --~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
..+.. ...+...|..+...++|.+|..+|..++..
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 22222 445667888999999999999999888754
No 236
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=96.73 E-value=0.068 Score=38.03 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=75.9
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--hC-----HHHHHHH--
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--ED-----YSETSSL-- 81 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~A~~~-- 81 (159)
......|-.++..|++.+|+..|+.+|...+-....+..+..+..++...+...+--+-+++ +. ....++.
T Consensus 115 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAA 194 (325)
T 3mv2_A 115 NEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 33566899999999999999999999999876554455555666555555433222222222 11 1111111
Q ss_pred HHHHhhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcHHH
Q 031461 82 CTKVLELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNRVV 129 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~ 129 (159)
|=.-.++.|.+..--++.|. ..++.++|.-|....++.+++.|..+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a 243 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA 243 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 11112445555555555555 4689999999999999999999975433
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.72 E-value=0.036 Score=38.45 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=59.4
Q ss_pred HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
-.++.|++++|+..+...++.+|.++..-..+.+.+.-.|+++.|.+.++.+..++|.....-..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999886554443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0084 Score=47.63 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=52.5
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
..+...+.-+..+|+|+.|+.+..+|+...|.+ ..+|..++.||..+|+|+.|+-.++-+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse---------------F~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDS---------------FESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh---------------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 456666777788999999999999999998775 566999999999999999999988876
No 239
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.51 E-value=0.13 Score=38.99 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=67.9
Q ss_pred HhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-CccH
Q 031461 15 HDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PLNV 93 (159)
Q Consensus 15 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~ 93 (159)
..-..+.+.|++++|...|....... -.|. ..+|..+-..+.+.|++++|...+++..... ..+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~ 175 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFG-IQPR-------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE 175 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCc-------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH
Confidence 33456677888888888887765431 1111 3457777777888888888888888877643 1255
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCc
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALT--IDPNN 126 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~ 126 (159)
..|..+-.++...|+.++|...+++... ..|+.
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~ 210 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence 6677788888888888888888887754 35544
No 240
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.43 E-value=0.14 Score=36.37 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=76.9
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhh--hCH-----HHHHHHHHH
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKL--EDY-----SETSSLCTK 84 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~-----~~A~~~~~~ 84 (159)
.....|-.++..|++.+|+..|+.+|...+-....+..+..+..++...+...+--+-+++ ++. ++..+.++-
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL 183 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM 183 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence 3567899999999999999999999999876655555666666666655543332222232 221 222222222
Q ss_pred H-----hhcCCccHHHHHHHHH-HHHhhCCHHHHHHHHHHHHhcCCCcH
Q 031461 85 V-----LELEPLNVKALYRRSQ-AHLKTSELEKAEADIKRALTIDPNNR 127 (159)
Q Consensus 85 a-----l~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~ 127 (159)
+ .++.|.+..--++.|. ..++.++|.-|...-++.+.+.|..+
T Consensus 184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 2 2445656555555555 46889999999999999999988643
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.35 E-value=0.034 Score=42.11 Aligned_cols=79 Identities=16% Similarity=0.022 Sum_probs=69.0
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCc
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPL 91 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~ 91 (159)
.+...|+.......+..|..+|.+|+.+.|..+. .++.+|.++...|+.-+|+-+|-+++.....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~---------------~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ---------------PYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc---------------hHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 4567899999999999999999999999988754 3999999999999999999999999988777
Q ss_pred cHHHHHHHHHHHHh
Q 031461 92 NVKALYRRSQAHLK 105 (159)
Q Consensus 92 ~~~~~~~~~~~~~~ 105 (159)
.+.+.-++...+..
T Consensus 219 f~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 219 FPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHH
Confidence 88888887777654
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.03 E-value=0.16 Score=33.07 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=55.0
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhh--cC---------------CccHHH-HHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLE--LE---------------PLNVKA-LYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~---------------~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
..+--+.|+-++++|..|+.+++..+. .+ |.+.+. +..+|.++...|+-++|+..+......
T Consensus 64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 355667899999999999999999982 22 344444 445899999999999999999999888
Q ss_pred CCCcHHHH
Q 031461 123 DPNNRVVK 130 (159)
Q Consensus 123 ~p~~~~~~ 130 (159)
+|--+.+.
T Consensus 144 ~~lf~~vE 151 (242)
T 3kae_A 144 SFLFSPVE 151 (242)
T ss_dssp CCCHHHHH
T ss_pred ccccchHH
Confidence 77554443
No 243
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=95.78 E-value=0.041 Score=31.10 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=34.8
Q ss_pred CChHH-HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 1 MDTHE-KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 1 ~s~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
||..+ -+..+-.+...|...-+.|+|.+|+.+|..+++..
T Consensus 1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 41 (83)
T 2v6y_A 1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVL 41 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 66666 67788889999999999999999999999999974
No 244
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.77 E-value=0.44 Score=36.07 Aligned_cols=103 Identities=7% Similarity=0.013 Sum_probs=71.8
Q ss_pred ccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC-CccHHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-PLNVKALYRRSQA 102 (159)
Q Consensus 24 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 102 (159)
+..+.|...|..-.... -.|+ ..+|..+-..+.+.|++++|...+++..... +.+...|..+-..
T Consensus 84 ~~l~~A~~lf~~M~~~G-~~Pd-------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~ 149 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDK-VVPN-------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149 (501)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHH
Confidence 34667777776644321 1111 4568888899999999999999999987653 2367778888889
Q ss_pred HHhhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHH
Q 031461 103 HLKTSELEKAEADIKRALTI--DPNNRVVKLVYMELKDKQR 141 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 141 (159)
|...|+.++|...|...... .|+. .....+-....+.+
T Consensus 150 ~~~~g~~~~A~~l~~~M~~~G~~Pd~-~ty~~Li~~~~~~g 189 (501)
T 4g26_A 150 FCRKGDADKAYEVDAHMVESEVVPEE-PELAALLKVSMDTK 189 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhhCC
Confidence 99999999999999988654 5654 33344434333333
No 245
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=95.43 E-value=0.067 Score=30.22 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=33.5
Q ss_pred CChHH-HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 1 MDTHE-KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 1 ~s~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
|||.. -+..+-.+...|...-+.|+|.+|+.+|..+++..
T Consensus 9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l 49 (83)
T 2w2u_A 9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVL 49 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45554 45578888899999999999999999999999974
No 246
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.084 Score=40.13 Aligned_cols=69 Identities=14% Similarity=0.074 Sum_probs=57.3
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCC-----ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEP-----LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
...+++.+-..|+..+.|+.|.....++.-..+ .....+|..|.++...++|.+|..++..|+...|.+
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 355677778889999999999999999853221 236788899999999999999999999999988765
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.09 E-value=0.68 Score=34.03 Aligned_cols=127 Identities=19% Similarity=0.058 Sum_probs=84.2
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhc-------------------ccCCCChH---------HHHHHH-HH--HH
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIE-------------------FHHSFTDD---------EKHQAN-GL--RL 59 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------------------~~~~~~~~---------~~~~~~-~~--~~ 59 (159)
....+.|..+...|++++-..+........+ ..+...+. +|...+ .. +.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999888887754433322 22222111 111111 11 12
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhc----CC--ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC---CCcHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLEL----EP--LNVKALYRRSQAHLKTSELEKAEADIKRALTID---PNNRVVK 130 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~ 130 (159)
.+-..+|..|+..|+|.+|...+.+..+- +. .-...+....++|...+++.++...+.++.... +.+|.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 23348899999999999999999888763 21 126678888999999999999999999987553 3455555
Q ss_pred HHHHHHH
Q 031461 131 LVYMELK 137 (159)
Q Consensus 131 ~~~~~~~ 137 (159)
..+..+.
T Consensus 180 a~i~~~~ 186 (394)
T 3txn_A 180 GALDLQS 186 (394)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444444
No 248
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.32 E-value=1.5 Score=36.54 Aligned_cols=103 Identities=10% Similarity=-0.067 Sum_probs=73.3
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE-- 89 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-- 89 (159)
.+...=+.+.+.|+.++|...|..--.........+ ..+|+.+-..+.+.|++++|...+++.....
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----------vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~ 197 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----------LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----------HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 355556678899999999999966443211111111 4568888899999999999999999987644
Q ss_pred CccHHHHHHHHHHHHhhCC-HHHHHHHHHHHHhc--CCCc
Q 031461 90 PLNVKALYRRSQAHLKTSE-LEKAEADIKRALTI--DPNN 126 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~p~~ 126 (159)
| +...|..+-.++.+.|+ .++|...|++.... .|+.
T Consensus 198 P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~ 236 (1134)
T 3spa_A 198 P-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236 (1134)
T ss_dssp C-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHH
T ss_pred C-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCCh
Confidence 5 56667777778888887 47788888777543 4543
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.23 E-value=0.55 Score=36.99 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHHhhHHHHHhhhhCHHHHHHHHHHHhhc--------CCccHHHHHHHH-------------HHHHhhCCHHHHHHHHHH
Q 031461 60 SCYLNNAACKLKLEDYSETSSLCTKVLEL--------EPLNVKALYRRS-------------QAHLKTSELEKAEADIKR 118 (159)
Q Consensus 60 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~-------------~~~~~~~~~~~A~~~~~~ 118 (159)
..|.++|..+.+.++++.|..+|.++-.. ...+.+.+..++ .++..+|++++|++.|.+
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHH
Confidence 45889999999999999999999886221 123333333332 245556777777776654
Q ss_pred H
Q 031461 119 A 119 (159)
Q Consensus 119 a 119 (159)
.
T Consensus 762 ~ 762 (814)
T 3mkq_A 762 S 762 (814)
T ss_dssp T
T ss_pred c
Confidence 3
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.94 E-value=1 Score=31.25 Aligned_cols=63 Identities=13% Similarity=0.006 Sum_probs=51.7
Q ss_pred hHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 18 NLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
...++.|...+|+......++..|.+. .....+-..+.-.|+|+.|..-++-+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da---------------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDA---------------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 356788999999999999999877763 335566677778999999999999999999987443
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.94 E-value=0.7 Score=36.39 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=60.1
Q ss_pred HHHHhhhHHHHcccHHHHHHHHHHHHHHhcc-----cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 12 RKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-----HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 12 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.....|..+.+.++++.|..+|.++=+...- .... ...+..++......|++..|...+-+
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~------------~~~~~~~~~~a~~~~~~~~A~~~~~~-- 748 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN------------KEGLVTLAKDAETTGKFNLAFNAYWI-- 748 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC------------HHHHHHHHHHHHHTTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC------------HHHHHHHHHHHHHcCchHHHHHHHHH--
Confidence 4577899999999999999999876433110 0000 11233455555666666666555422
Q ss_pred hcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 031461 87 ELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 140 (159)
.. . +-...++|...+++++|+.. |....|....+...+..-...+
T Consensus 749 -~g--~---~~~a~~~~~~~~~~~~A~~l---A~~~~~~~~~i~~~~~~~~~~L 793 (814)
T 3mkq_A 749 -AG--D---IQGAKDLLIKSQRFSEAAFL---GSTYGLGDNEVNDIVTKWKENL 793 (814)
T ss_dssp -HT--C---HHHHHHHHHHTTCHHHHHHH---HHHTTCCHHHHHHHHHHHHHHH
T ss_pred -cC--C---HHHHHHHHHHcCChHHHHHH---HHHhCCChHHHHHHHHHHHHHH
Confidence 11 1 22344568889999999765 3345565522434444333333
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.91 E-value=1.2 Score=32.50 Aligned_cols=84 Identities=8% Similarity=-0.026 Sum_probs=64.2
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCC----------cc------------HHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEP----------LN------------VKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~----------~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
...|......|+.+.|...+.+++.+.. .+ ..+...++.++...|++.+|+..+..++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344444556889999999999987741 11 1244457888899999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHH
Q 031461 121 TIDPNNRVVKLVYMELKDKQREYAKY 146 (159)
Q Consensus 121 ~~~p~~~~~~~~~~~~~~~~~~~~~~ 146 (159)
..+|-+..++..+..+....++..+.
T Consensus 199 ~~~P~~E~~~~~lm~al~~~Gr~~~A 224 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLSDRQSDA 224 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999888887766665444
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.81 Score=29.69 Aligned_cols=50 Identities=12% Similarity=-0.059 Sum_probs=31.0
Q ss_pred hhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 17 GNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 17 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...+.+.|+++.|.+..... .+ ...|..+|...+..|+++-|..+|.++-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~---------------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----ND---------------SITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CC---------------HHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 34555667777777665432 01 2337777777777777777777776653
No 254
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.15 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.076 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
||..+-+..+..+...|...-..|+|++|+.+|..+++..
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3434455677778888888889999999999999999974
No 255
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=93.34 E-value=0.34 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
+-+..+..+...|...-..|+|++|+.+|..++++.-
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 4566777888888888899999999999999999754
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.22 E-value=0.71 Score=29.28 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=55.9
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHH
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRS 100 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 100 (159)
...++.+.|-+.|..|+.. .... ..++...|..-...|+...|...+.+++.+.|.... .+..+
T Consensus 71 ~ei~D~d~aR~vy~~a~~~---hKkF------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a 134 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARAN---CKKF------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIA 134 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHH---CTTB------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH---hHHH------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHH
Confidence 4557889999999999986 3222 677888999999999999999999999999986544 45555
Q ss_pred HHHHhhC
Q 031461 101 QAHLKTS 107 (159)
Q Consensus 101 ~~~~~~~ 107 (159)
......|
T Consensus 135 ~~nl~~~ 141 (161)
T 4h7y_A 135 LRNLNLQ 141 (161)
T ss_dssp HHHHHTT
T ss_pred HHhhhcC
Confidence 5555554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.09 E-value=0.81 Score=38.25 Aligned_cols=106 Identities=8% Similarity=0.064 Sum_probs=72.4
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCCh--HHHHHH------HHHHHHHHhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTD--DEKHQA------NGLRLSCYLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
+-.|..++..|++++|..+|.++-........... .....+ .......|.-+...+...+.++.++.+...|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66899999999999999999887543221111110 011100 0112234667778888899999999999999
Q ss_pred hhcCCcc-H----HHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 86 LELEPLN-V----KALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 86 l~~~~~~-~----~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
|...+.. . ..|.++-..+..+|+|++|...+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9865432 2 25677888899999999997776543
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.56 Score=30.43 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=41.3
Q ss_pred hhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 70 LKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 70 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
+..|+++.|.+.++.. ++...|-.+|..-...|+++-|..+|.++-
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 7899999999998765 578899999999999999999999999874
No 259
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=92.14 E-value=1.7 Score=32.64 Aligned_cols=102 Identities=11% Similarity=-0.034 Sum_probs=68.5
Q ss_pred cccHHHHHHHHHHHHHHhcccCCCChHH---HHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC--------C-
Q 031461 23 AGKYWRASKKYEKAAKIIEFHHSFTDDE---KHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE--------P- 90 (159)
Q Consensus 23 ~~~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~- 90 (159)
....++|.....++....-.+...+..+ ..... ..-+..++-.+|+++++..-|...+...-... |
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~--~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~ 216 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRI--LLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQL 216 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHH--HHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchh--HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCc
Confidence 3456777777888887754432211110 01111 12234566788999999999988886553322 2
Q ss_pred -ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc-CCCc
Q 031461 91 -LNVKALYRRSQAHLKTSELEKAEADIKRALTI-DPNN 126 (159)
Q Consensus 91 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~ 126 (159)
+.....|.+|..+...++|.+|...+..|+.. -|.+
T Consensus 217 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 217 DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 23678999999999999999999999999988 6654
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.68 E-value=0.86 Score=33.76 Aligned_cols=73 Identities=7% Similarity=0.081 Sum_probs=58.2
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcC---CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELE---PLNVKALYRRSQAHLKTSELEKAEADIKRALTI--DPNNRVVKLVY 133 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 133 (159)
++..+|..|...|+++.|...+.++.... ..-...++....++...+++..+...+.++..+ ...++.....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 56689999999999999999999987643 234788899999999999999999999998655 33444444333
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.31 E-value=2.9 Score=31.14 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
...++.+......++..++|..|...+.++-......+.. ..+....+...|..+...++|.+|-.+|..+.
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~--------~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY--------ESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3457778888999999999999999999875433222222 24567778889999999999999999998887
Q ss_pred hc
Q 031461 87 EL 88 (159)
Q Consensus 87 ~~ 88 (159)
..
T Consensus 246 ~~ 247 (445)
T 4b4t_P 246 QT 247 (445)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 262
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=91.07 E-value=1.1 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=25.2
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHH
Q 031461 97 YRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVY 133 (159)
Q Consensus 97 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 133 (159)
..+|+.+...|++++|...|.+|+.+.|.-......+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3467777777777777777777777777655444443
No 263
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=90.08 E-value=3.1 Score=30.31 Aligned_cols=63 Identities=8% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHhhc-----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461 78 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 78 A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~ 140 (159)
++..|.++|.. ...+...|..+|-.+++.+++.+|+..+..+-.. ..+|.++.+.+-.|-..+
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 349 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDL 349 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 66677777754 2456778888999999999999999999887544 346778877777765543
No 264
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=89.92 E-value=1 Score=25.43 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
..+..+...|...-..|+|++|+.+|..+++..-
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4566777888888999999999999999998743
No 265
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=89.73 E-value=0.95 Score=25.91 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
+..+-.+-.++..+.+.|+|++||++..++..+...
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 345666777889999999999999999999987654
No 266
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=89.43 E-value=1 Score=25.82 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
+..+-.+...|...-..|+|++|+.+|..+++..-
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34566778888888899999999999999999754
No 267
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=88.55 E-value=3.7 Score=30.52 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=47.6
Q ss_pred HHHHHHHHhhc-----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461 78 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 78 A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~ 140 (159)
++..|.++|.. ...+...|..+|-.+++.+++.+|+..+-.+-.. ..+|.++.+++-.|-..+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAnel 371 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 371 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHh
Confidence 56667777654 2456777888999999999999999999887544 346788888887776544
No 268
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.74 E-value=3 Score=24.93 Aligned_cols=70 Identities=11% Similarity=-0.025 Sum_probs=51.2
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc-------cCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF-------HHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSET 78 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 78 (159)
.+-.+...|...=..|+-+.|+.+|.+.|..... .+....+.|.....+......|++.+-..++..+..
T Consensus 21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~ 97 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKG 97 (116)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677777778999999999888886532 223445788888888888888988888777765543
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=87.60 E-value=1.6 Score=23.81 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
....|..+...|++++|+.+|-+|+...+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 456789999999999999999999998665
No 270
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=87.35 E-value=1.5 Score=22.31 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 2 DTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 2 s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
+.++.+..++.+...+.....-.+...|++..++++++.
T Consensus 12 ~~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL 50 (53)
T 2rkl_A 12 DRASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLL 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 356678889999999999999999999999999999874
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.25 E-value=5.8 Score=30.97 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=44.4
Q ss_pred HHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 68 CKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 68 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..+..|++..|..++...-..........|.+|.++..+|+-++|...|..+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 345679999999999776664445688899999999999999999999988765
No 272
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=87.00 E-value=4.4 Score=27.32 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=41.2
Q ss_pred HHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHh-hhhCHHHHHHHHHHHhhc
Q 031461 21 FRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 21 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~ 88 (159)
|..|+-+.|...|+.|.++....-+.+ +|++..+.+|.+..|. -++++++|....++++..
T Consensus 136 ~~~g~~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~ 197 (227)
T 2o8p_A 136 FGLCSLEDSKKIHQDAFTLLCEHPDKI-------EQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI 197 (227)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHCGGGG-------GGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHhhCCCC-------ChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445667889999999998754321111 2334555666666655 488999999999998663
No 273
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=85.90 E-value=3.4 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 13 KKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 13 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
....|..+...|+++.|+.+|-+|+...+.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 456788999999999999999999998765
No 274
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=85.89 E-value=15 Score=30.92 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=55.5
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh--cCCCcHH
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL----EPLNVKALYRRSQAHLKTSELEKAEADIKRALT--IDPNNRV 128 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 128 (159)
...|+.+-.++.+.|+.++|...+...... -..+...|..+-..|.+.|++++|...|.+... +.|+...
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 345788888999999999999999765432 233777888899999999999999999998864 4675543
No 275
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.59 E-value=2.3 Score=32.49 Aligned_cols=73 Identities=14% Similarity=0.066 Sum_probs=53.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
+..+.-.=..|...+.|+.|..+.+++. .|... .+. ......++.+|.++.-.++|.+|..++..|++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~-~sn-------~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTD-VSS-------SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT-SCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc-CCH-------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 3444455567788899999999988875 33221 111 2235567889999999999999999999999988
Q ss_pred Ccc
Q 031461 90 PLN 92 (159)
Q Consensus 90 ~~~ 92 (159)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
No 276
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=85.19 E-value=2.4 Score=24.44 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 99 RSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 99 ~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
+|+.+...|+++.|+..|.+|+.+.|.-
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 5666666666666666666666655543
No 277
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=84.68 E-value=4.5 Score=31.81 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
....+..|...+..|+|.-|......++..+|+|..++..++.+..+++...
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 3457778899999999999999999999999999999999999999887654
No 278
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=84.24 E-value=2.6 Score=27.85 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHH-----HHHHHHHHhhCCHHH
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKAL-----YRRSQAHLKTSELEK 111 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~~~~~~ 111 (159)
.....+.+|..++..++|.+|..++..|++..|...... ..+--+-.-+|+...
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 355677899999999999999999999999887654332 223333345566543
No 279
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=83.77 E-value=3.8 Score=27.83 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE 87 (159)
Q Consensus 27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 87 (159)
+.|...|+.|+++....-+.+ ++++..+.+|.+..|.. ++++++|....++++.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pt-------hPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567778888888764322221 25556666777776665 7888888887777653
No 280
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=83.13 E-value=4.2 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
....|.+|..+...++|.+|...+..|+..-|.+
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 6678889999999999999999999998887765
No 281
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=82.90 E-value=5.2 Score=27.59 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHhh
Q 031461 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVLE 87 (159)
Q Consensus 27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~ 87 (159)
+.|...|+.|+++. ..-+.+ ++++..+.+|.+..|.. +++.++|...+++++.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPT-------HPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57788899999887 432222 25566667777777665 7899999888877764
No 282
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.72 E-value=5 Score=23.98 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=30.7
Q ss_pred hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 73 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 73 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
..+++|..+.+++|.++.. |.-.....-|.+++..+.+++.+..+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 3478888888888888762 44444555566667777777777653
No 283
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=81.63 E-value=14 Score=27.49 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHHHHHHHhhc-----CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHH
Q 031461 78 TSSLCTKVLEL-----EPLNVKALYRRSQAHLKTSELEKAEADIKRALTI------DPNNRVVKLVYMELKDKQ 140 (159)
Q Consensus 78 A~~~~~~al~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~ 140 (159)
++..|+++|.. ...+...|..+|-.+++.++|.+|+..+..+-.. ..+|.++.+.+..+-..+
T Consensus 283 ~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~reDeEiYke~~eIanel 356 (489)
T 4gq4_A 283 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEVANDV 356 (489)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccchHHHHHHHHHHHHHh
Confidence 45666666653 2345677888899999999999999999887443 456788887776665444
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.97 E-value=19 Score=29.61 Aligned_cols=26 Identities=4% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
+-+|..+...|++++|..+|.+|-.-
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~g 869 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLV 869 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhh
Confidence 66899999999999999999987643
No 285
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=80.74 E-value=5.5 Score=27.47 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 86 (159)
Q Consensus 27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 86 (159)
+.|...|+.|+++....-+.+ ++++..+.+|.+..|.. ++++++|....++++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPT-------HPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC-------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 577888999988765322221 25566667777777665 789999988887766
No 286
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=80.69 E-value=9.5 Score=28.40 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=57.5
Q ss_pred HHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCC--C---h---HHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHH
Q 031461 10 CERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSF--T---D---DEKHQANGLRLSCYLNNAACKLKLEDYSETSSL 81 (159)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~---~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 81 (159)
...+..+++.+...++|.+|--++.....+...+... + . ....-...+...++......+.+-+.|+.|+..
T Consensus 35 i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~ke~L~~~~i~~f~kg~~~E~ai~l 114 (436)
T 2yin_A 35 IRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLKETLYETIIGYFDKGKMWEEAISL 114 (436)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4456677889999999999998886555554332211 0 0 000001233444566677777777788888888
Q ss_pred HHHHhhcCCccHHHHHHHHHHHHhh
Q 031461 82 CTKVLELEPLNVKALYRRSQAHLKT 106 (159)
Q Consensus 82 ~~~al~~~~~~~~~~~~~~~~~~~~ 106 (159)
|+.++........-+-.++.++...
T Consensus 115 ~k~L~~~yE~~~~Dy~~Ls~~~~~~ 139 (436)
T 2yin_A 115 CKELAEQYEMEIFDYELLSQNLIQQ 139 (436)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888765443323344555555443
No 287
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=80.66 E-value=8.3 Score=24.20 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=34.9
Q ss_pred hCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 73 EDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 73 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|.-+.=...+...+.-.+.++..++.+|.+|.+.|+..+|-..+.+|-..
T Consensus 105 ~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 105 GKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp TCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33333333344434445667999999999999999999999988887643
No 288
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=80.62 E-value=5.8 Score=27.17 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 86 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 86 (159)
-+.|...|+.|.++....-+.+ ++++..+.+|.+..|.. ++++++|...+++++
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPT-------HPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677788888888754322221 25566667777777665 788888888777765
No 289
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=80.60 E-value=5.7 Score=27.39 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhh-hhCHHHHHHHHHHHh
Q 031461 27 WRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLK-LEDYSETSSLCTKVL 86 (159)
Q Consensus 27 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al 86 (159)
+.|...|+.|+++....-+.+ .+++..+.+|.+..|.. ++++++|...+++|+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pT-------hPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPT-------HPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567778888887754322221 25566667777777665 788888888777765
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.33 E-value=5.2 Score=32.90 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=40.3
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
++..+...|.++-| ...+..-|.++..-|.+|.++...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34445566666654 34566777888888999999999999999999999874
No 291
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=77.85 E-value=21 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHhhhHH---HHcccHHHHHHHHHHHHHHhccc
Q 031461 3 THEKIEACERKKHDGNLL---FRAGKYWRASKKYEKAAKIIEFH 43 (159)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~---~~~~~~~~A~~~~~~al~~~~~~ 43 (159)
..+++..++.+.+++... .....-+.|+.+|++|++.....
T Consensus 422 L~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~ 465 (526)
T 2wb7_A 422 LQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKA 465 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456667777777765222 12234577888888888876543
No 292
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=77.65 E-value=7.6 Score=22.06 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhc
Q 031461 8 EACERKKHDGNLLFRAGKYWRASKKYEKAAKIIE 41 (159)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~ 41 (159)
..++.+...|..+|+.++|.+|..+|+++.....
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 5678889999999999999999999999987643
No 293
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=77.18 E-value=8.4 Score=26.15 Aligned_cols=54 Identities=24% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHh-hhhCHHHHHHHHHHHh
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVL 86 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al 86 (159)
-+.|...|+.|.++....-+.+ ++++..+.+|.+..|. -++++++|...+++++
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pt-------hPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPT-------NPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3677788888888764322221 2556666777777765 4688888888777765
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=75.83 E-value=8.4 Score=21.60 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
+...|.-.-..|+|++|+..|..++..
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444556677777777777766543
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=74.59 E-value=25 Score=26.40 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=52.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..-.....-..||+.++...+...++..-.. ..-|+.+.-. ..-.....+.+|..++..++|.+|..++..|++.
T Consensus 175 ~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p----~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 175 LLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQ----LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSC----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCC----ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3334444557889999998888888543332 1111111100 1223556789999999999999999999999998
Q ss_pred -CCcc
Q 031461 89 -EPLN 92 (159)
Q Consensus 89 -~~~~ 92 (159)
.|..
T Consensus 250 lcp~~ 254 (455)
T 3t5v_B 250 LLNLP 254 (455)
T ss_dssp HHHCC
T ss_pred cCCcc
Confidence 7654
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.23 E-value=29 Score=27.10 Aligned_cols=126 Identities=10% Similarity=-0.081 Sum_probs=74.0
Q ss_pred hhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 16 DGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 16 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
.|......++.+.|...+....... ..++++ ...+...+|.-....+...++..++..+....++....
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~----~~~~~~-------~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQ----QLNEDQ-------IQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI 288 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT----TCCHHH-------HHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhcc----CCCHHH-------HHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHH
Confidence 3445556667888888887654421 122111 12234445555555664556777777766555444333
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031461 96 LYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYAKYQAEIFGTM 154 (159)
Q Consensus 96 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (159)
-...+.+ ...|+++.|..+|.+.-.-.+.......++++....+++..+... .|.++
T Consensus 289 e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~-~~~~~ 345 (618)
T 1qsa_A 289 ERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE-ILHQL 345 (618)
T ss_dssp HHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence 3444444 467999999999987655444557778888888777665544322 44443
No 297
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=73.68 E-value=9.2 Score=21.54 Aligned_cols=34 Identities=18% Similarity=0.054 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHH
Q 031461 4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA 37 (159)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 37 (159)
.+-++.+..+.+.|..+++.|++..|+.++.=+-
T Consensus 29 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 29 EGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556778889999999999999999988875433
No 298
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=73.62 E-value=9.1 Score=21.60 Aligned_cols=32 Identities=9% Similarity=0.035 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhhHHHHcccHHHHHHHHHH
Q 031461 4 HEKIEACERKKHDGNLLFRAGKYWRASKKYEK 35 (159)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 35 (159)
.+-++.+..+.+.|..+++.|++..|+.++.=
T Consensus 33 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isY 64 (87)
T 2pmr_A 33 EAVVERALNYRDDSVYYLEKGDHITSFGCITY 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566788888888888888888888888653
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.47 E-value=15 Score=23.36 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=49.1
Q ss_pred HHHHHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHH-hhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 11 ERKKHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCY-LNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..-+..|..+|..|+|-+|-+.++.+-...+.. + ++. .-+...+. ...|..+...|++.-|...+.+++.
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~---~-~er---~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRG---N-TES---KFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSS---S-HHH---HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCC---c-hHH---HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345678899999999999999998766543221 1 111 12233334 5667778889999999999999976
No 300
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=72.70 E-value=9.3 Score=26.47 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcccC--CCChHHHHHHHHHHHHHHhhHHHHHh-hhhCHHHHHHHHHHHhhc
Q 031461 26 YWRASKKYEKAAKIIEFHH--SFTDDEKHQANGLRLSCYLNNAACKL-KLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~ 88 (159)
-+.|...|+.|+++....- +. ..|++..+.+|.+..|. -++++++|....++|+.-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~p-------ThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYP-------SDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGG-------GCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCC-------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567777888777653222 11 12556666677777766 477888888877777644
No 301
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.42 E-value=24 Score=25.32 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHH-HHHHHhcccCCCChHHHHHHHHHHHH------------HHhhHHHHHhh
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYE-KAAKIIEFHHSFTDDEKHQANGLRLS------------CYLNNAACKLK 71 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~a~~~~~ 71 (159)
|.-+.-+.++...+.+.++++|++|+++.- -+..+... ... ..-.++--+... ....+..+...
T Consensus 30 ~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~-~Q~--~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 30 EQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRS-GQG--GSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCH--HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHC-CCc--chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 445556667777888888889999888743 33333221 100 000011000011 11122222222
Q ss_pred hhC--------HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHH
Q 031461 72 LED--------YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADI 116 (159)
Q Consensus 72 ~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 116 (159)
... ..+|+.+..+.=...-.++..+..+|..|..-+++.+|...|
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 111 222333333211122356788888999999999999887776
No 302
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=71.93 E-value=11 Score=21.36 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCc--HH-HHHHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNN--RV-VKLVYMELKDKQ 140 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~-~~~~~~~~~~~~ 140 (159)
..+...+..|.-++..++|.+|...|+++..+..+- .. +...+..|+..+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHh
Confidence 345666777778888888888888888887554332 12 224556665544
No 303
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=70.97 E-value=12 Score=21.32 Aligned_cols=63 Identities=19% Similarity=0.053 Sum_probs=42.1
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
+..|..+|..|+|-+|-+.++.+-...+. ++ -.-+...+....|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~------~~---~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATG------EE---RRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCH------HH---HHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCC------ch---HHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 45788899999999999998877765421 11 1122333345556666677777 8888888865
No 304
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=70.26 E-value=7.1 Score=32.72 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 65 NAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+.......+.++-+.. .+..-|.++..-|.+|.++...|++++|..+|+++
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444555666665543 34455677777899999999999999999999887
No 305
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.16 E-value=14 Score=21.17 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+-.+-++++.+...|.|++|+.+.+++
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 334455666666666666666555444
No 306
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=69.09 E-value=13 Score=29.27 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=44.5
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEK 111 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (159)
.....|...+..|+|.-|.+.++.++..+|++..+...++.+|.++|.-.+
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~ 501 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAE 501 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 355677778899999999999999999999999999999999999984443
No 307
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=67.20 E-value=21 Score=22.63 Aligned_cols=60 Identities=7% Similarity=0.065 Sum_probs=44.8
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCCcc------HHHHHH-HHHH--HHhhCCHHHHHHHHHHHHhc
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEPLN------VKALYR-RSQA--HLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~-~~~~--~~~~~~~~~A~~~~~~al~~ 122 (159)
+..+..++..|+|-+|-+.++.+....+.. ..+++. ++.+ +.+.|+..-|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445566677799999999999999876543 445555 4443 46679999999999999763
No 308
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=66.65 E-value=19 Score=21.86 Aligned_cols=84 Identities=6% Similarity=-0.053 Sum_probs=47.4
Q ss_pred HHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC--cHHHHHHHH
Q 031461 57 LRLSCYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN--NRVVKLVYM 134 (159)
Q Consensus 57 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~ 134 (159)
++...+-..+.+++..++.+..+..+...-..-...|......+.....-.+..+|..++++....... ...++..+.
T Consensus 38 ~W~e~LeeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~~~~y~~t~d~~~lnqAWd~Y~ 117 (126)
T 2npu_A 38 MWHEGLEEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEWCRKYMKSGNVKDLTQAWDLYY 117 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Confidence 344445666777778888888888876662221112333444444444555677788888777543221 134555555
Q ss_pred HHHHHH
Q 031461 135 ELKDKQ 140 (159)
Q Consensus 135 ~~~~~~ 140 (159)
.+..++
T Consensus 118 ~Vf~rI 123 (126)
T 2npu_A 118 HVFRRI 123 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 309
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=63.49 E-value=28 Score=22.75 Aligned_cols=88 Identities=11% Similarity=0.061 Sum_probs=60.2
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH--hc---------------CCC
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRAL--TI---------------DPN 125 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~---------------~p~ 125 (159)
..++-...-.|+|..|+-.+ +.-+...+.+..+.||..+++|..|+.+++..+ .+ +|.
T Consensus 37 lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~ 111 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPG 111 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTT
T ss_pred hhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccc
Confidence 44555666789998876654 334567888999999999999999999999998 33 345
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031461 126 NRV-VKLVYMELKDKQREYAKYQAEIFGTMLS 156 (159)
Q Consensus 126 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (159)
|.+ ....++.+-.+.+..++.-+ -|+.-|+
T Consensus 112 DkEfFy~l~a~lltq~g~r~EaI~-y~~~Sf~ 142 (242)
T 3kae_A 112 DEEFFESLLGDLCTLSGYREEGIG-HYVRSFG 142 (242)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHhhh-HhhhhcC
Confidence 544 44556666666655555433 4444444
No 310
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=63.41 E-value=24 Score=21.91 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
+..+..+...|..+...|+.+.|.-.|.+.+.+.
T Consensus 37 lrta~~llr~A~~y~~egd~e~AYily~R~~~L~ 70 (146)
T 2xze_A 37 FRSGVEIIRMASIYSEEGNIEHAFILYNKYITLF 70 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999876664
No 311
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=61.38 E-value=20 Score=20.30 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=34.3
Q ss_pred HHHHHHhhhHHHHc---ccHHHHHHHHHHHHHHhccc----CCCChHHHHHHHHHHHHHHhhHHHHH
Q 031461 10 CERKKHDGNLLFRA---GKYWRASKKYEKAAKIIEFH----HSFTDDEKHQANGLRLSCYLNNAACK 69 (159)
Q Consensus 10 ~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~ 69 (159)
+=.+...|...=.. |+-++|+.+|.+.+.....- ..-..+.|.....+......++..+-
T Consensus 16 AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~ 82 (89)
T 3eab_A 16 AFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAK 82 (89)
T ss_dssp HHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 34455556666556 77777888888877754321 11133555555566665555555543
No 312
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=60.12 E-value=28 Score=25.83 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
|+..+..+..|+...|...... ..-...++..+|.+|+-+++|++|...++.+|.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~g-------r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNG-------RMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTT-------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCC-------eecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3445555666666655321100 011345677888899999999999999999985
No 313
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=57.86 E-value=43 Score=25.18 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
|+..+..+..|+...|........ -..-...++..+|.+|+-+++|++|...++.+|..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~----gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAK----HKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSST----TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccC----CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444555566666666532110000 00113456778899999999999999999999865
No 314
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=57.17 E-value=34 Score=25.44 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++..+|.+|+-+++|++|...++.+|.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 45677788888889999999999999885
No 315
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=56.30 E-value=54 Score=24.39 Aligned_cols=30 Identities=10% Similarity=-0.127 Sum_probs=25.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..++..+|.+|+-+++|++|...++.+|..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456778888888899999999999999864
No 316
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=55.74 E-value=2.4 Score=29.17 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 6 KIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
....|-.+...|..+=+.|+|.+|+.+|..++++.-.
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~ 55 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ 55 (257)
T ss_dssp -------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455667788888899999999999999999987543
No 317
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=60.03 E-value=2.5 Score=33.30 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Q 031461 94 KALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDKQREYA 144 (159)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 144 (159)
...+..|...+..|+|.-|......++..+|+|..++..++.+.++++...
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 456667888888999999999999999999999999999999888887654
No 318
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=54.38 E-value=25 Score=21.40 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=26.7
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
.++.+...|..++..|++-+|-+.|-+|...
T Consensus 6 lAe~yL~EA~ell~kGD~vQAsEK~ykAaee 36 (129)
T 2jpu_A 6 SAEVYYEEAEEFLSKGDLVQACEKYYKAAEE 36 (129)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999988777764
No 319
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=53.99 E-value=26 Score=19.28 Aligned_cols=25 Identities=8% Similarity=0.015 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 97 YRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 97 ~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
..+|.=|.-.|+|+.|+.+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3445555555666666655555543
No 320
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.95 E-value=58 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=26.6
Q ss_pred HHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 58 RLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 58 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
...++..+|.+|+-.++|++|...++++|..
T Consensus 196 k~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 196 KLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 3556778889999999999999999999964
No 321
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=52.82 E-value=38 Score=25.28 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 26 YWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 26 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
|+..+.-+..|+...|...... ..-+..++..+|.+|+-+++|++|...++.+|..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~g-------r~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNG-------YINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTT-------SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCC-------cCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 3444555666666554321100 0113456778889999999999999999999864
No 322
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=52.27 E-value=55 Score=24.26 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCC--------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 75 YSETSSLCTKVLELEP--------LNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
|+..+.+++.|+..-| +...+...+|.+|...|+|++|....+.++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4556667777766533 2356778899999999999999999998874
No 323
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=51.79 E-value=3.1 Score=30.93 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHhcc
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKIIEF 42 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~ 42 (159)
+-...+-.+...|..+-+.|+|.+|+.+|..+++..-.
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~ 43 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH 43 (444)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34567777888898999999999999999999997543
No 324
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=50.91 E-value=42 Score=20.82 Aligned_cols=34 Identities=12% Similarity=-0.047 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHHh
Q 031461 7 IEACERKKHDGNLLFRAGKYWRASKKYEKAAKII 40 (159)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 40 (159)
+..+..+...|..+...|+.+.|.-+|.+-+.+.
T Consensus 39 ~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~ 72 (144)
T 2a9u_A 39 VHSALKIFKTAEECRLDRDEERAYVLYMKYVTVY 72 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999998877664
No 325
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=50.25 E-value=40 Score=20.34 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
+.+..++.....|...+..|.|+.|.-...+|++.
T Consensus 11 ~~~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~Ek 45 (135)
T 1o3u_A 11 HHMDAAKDDLEHAKHDLEHGFYNWACFSSQQAAEK 45 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 45778899999999999999998888777777765
No 326
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=50.13 E-value=60 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.123 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcCC--------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 75 YSETSSLCTKVLELEP--------LNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
|+..+.+++.|+..-| +...++..+|.+|...|+|++|......++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3556667777766433 2356778899999999999999999998875
No 327
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=49.93 E-value=31 Score=19.06 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=7.3
Q ss_pred HhhCCHHHHHHHHHHH
Q 031461 104 LKTSELEKAEADIKRA 119 (159)
Q Consensus 104 ~~~~~~~~A~~~~~~a 119 (159)
-..|+|++|+..|..+
T Consensus 30 D~~g~y~eAl~lY~~a 45 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKA 45 (83)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHH
Confidence 3444444444444443
No 328
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=49.88 E-value=68 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.042 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhcCCc--------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 75 YSETSSLCTKVLELEPL--------NVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|+..+.+++.|+..-|. ...++-.+|.+|...|+|++|....+.++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 55667777777765442 3557788999999999999999999998854
No 329
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.49 E-value=62 Score=21.77 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=23.5
Q ss_pred hhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHH
Q 031461 63 LNNAACKLKLEDYSETSSLCTKVLELEPLNVKA 95 (159)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 95 (159)
-....++++.|.|++|...+++.+.-++.+.+.
T Consensus 118 ~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kL 150 (235)
T 3bu8_A 118 EAAVIICIKNKEFEKASKILKKHMSKDPTTQKL 150 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCCchHH
Confidence 344455678888999988888888876555443
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.37 E-value=40 Score=22.67 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhcCCcc------HHHHHHH-H-HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 031461 75 YSETSSLCTKVLELEPLN------VKALYRR-S-QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELK 137 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~~------~~~~~~~-~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 137 (159)
.+-|+..++..-.-.+-. +.-++.. + .+....|.|++|...+++.+.-+|.+......+..+-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445666666554444321 2222222 2 3457899999999999999998777766666665553
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.14 E-value=62 Score=21.72 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 76 SETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 76 ~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
+.+...|..... +.-..+..|...|..+...|++.+|...|+.++...
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 355566666654 456678888889999999999999999999998764
No 332
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=46.64 E-value=83 Score=23.75 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.9
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..++..+|.+++-.++|++|...++.+|..
T Consensus 182 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 182 GAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677788888888999999999988864
No 333
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.38 E-value=36 Score=18.74 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=6.5
Q ss_pred HHHHHHHHHhcCCCc
Q 031461 112 AEADIKRALTIDPNN 126 (159)
Q Consensus 112 A~~~~~~al~~~p~~ 126 (159)
|++.|..++...|+.
T Consensus 37 aie~l~~~lk~e~d~ 51 (83)
T 2v6y_A 37 AIEVLSQIIVLYPES 51 (83)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCH
Confidence 333344444445544
No 334
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=46.27 E-value=54 Score=20.79 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCC
Q 031461 75 YSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPN 125 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 125 (159)
...|...+..+...+|......-.+..+++...+....+..|...+..+|.
T Consensus 72 L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~ 122 (175)
T 4abx_A 72 IGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPE 122 (175)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 344556666666778877777777888888888888777777777776764
No 335
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=45.78 E-value=74 Score=23.64 Aligned_cols=51 Identities=12% Similarity=-0.058 Sum_probs=33.3
Q ss_pred HHHHHHhhhHHHH-cccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCH
Q 031461 10 CERKKHDGNLLFR-AGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDY 75 (159)
Q Consensus 10 ~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 75 (159)
-+.+...+..+|. .+.|+.|+..|+..+......... |..++.++..+.++
T Consensus 91 ke~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~~~~D---------------y~~Ls~~~~~~a~~ 142 (436)
T 2yin_A 91 KETLYETIIGYFDKGKMWEEAISLCKELAEQYEMEIFD---------------YELLSQNLIQQAKF 142 (436)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCC---------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHH
Confidence 3445556666664 458999999999998876643111 66677766665543
No 336
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=45.02 E-value=41 Score=19.05 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=40.5
Q ss_pred hHHHHHhhhhCHHHHHHHHHHHhhcCCcc----HHHHHHHHHH--HHhhCCHHHHHHHHHHHHh
Q 031461 64 NNAACKLKLEDYSETSSLCTKVLELEPLN----VKALYRRSQA--HLKTSELEKAEADIKRALT 121 (159)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~--~~~~~~~~~A~~~~~~al~ 121 (159)
..|..++..|+|-+|-+.++.+....|+. ..+++.++.. +...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 34556667799999999999999888654 3345555554 3456777 8888988865
No 337
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=44.94 E-value=79 Score=23.75 Aligned_cols=48 Identities=29% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcCC-----------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 75 YSETSSLCTKVLELEP-----------LNVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|+..+.+++.|+..-| +...++-.+|.+|...++|++|....+.++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455566666665433 22457788999999999999999999999864
No 338
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.77 E-value=80 Score=22.32 Aligned_cols=27 Identities=11% Similarity=-0.141 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHH
Q 031461 91 LNVKALYRRSQAHLKTSELEKAEADIK 117 (159)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~A~~~~~ 117 (159)
.++..+..+|..|..-+++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578889999999999999999987765
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=43.65 E-value=1.2e+02 Score=24.01 Aligned_cols=32 Identities=13% Similarity=0.129 Sum_probs=21.6
Q ss_pred HHHHHHHHHH--HhhCCHHHHHHHHHHHHhcCCCc
Q 031461 94 KALYRRSQAH--LKTSELEKAEADIKRALTIDPNN 126 (159)
Q Consensus 94 ~~~~~~~~~~--~~~~~~~~A~~~~~~al~~~p~~ 126 (159)
..+..+..++ +..|+|+.|+..+++ +.+-|.+
T Consensus 537 ~lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 537 MLLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 3445555555 888999999888887 4466654
No 340
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=42.63 E-value=88 Score=22.63 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
+.+++..|......+++-+|+..++.+
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A 279 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEA 279 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 445555555555556666655555544
No 341
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=42.26 E-value=78 Score=23.66 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=24.8
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhh
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLE 87 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 87 (159)
..++..+|.+|+-.++|++|...++.++.
T Consensus 180 ~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 180 GAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34677788899999999999999999885
No 342
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=42.07 E-value=63 Score=20.32 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=27.0
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLELE 89 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 89 (159)
...+..+|.+|.+.|+..+|.+...+|.+..
T Consensus 125 ~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 125 ASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4568899999999999999999999887654
No 343
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=41.69 E-value=1.1e+02 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=24.4
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHhhc
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVLEL 88 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 88 (159)
..++..+|.+++-.++|++|...++.+|..
T Consensus 198 ~aA~allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 198 QAALAFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445677788888889999999999999863
No 344
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=40.88 E-value=46 Score=19.43 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 89 EPLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
...+++..+.-|.-..+.|+|++|...++.+-
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~ 47 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAG 47 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567777778888888888888888777663
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.62 E-value=78 Score=20.97 Aligned_cols=34 Identities=6% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHH
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVK 94 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 94 (159)
+--....++++.|.|++|...+++...-++++.+
T Consensus 119 lk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 119 IKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 3344555677788888888888887776655544
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.34 E-value=23 Score=23.39 Aligned_cols=36 Identities=11% Similarity=0.143 Sum_probs=24.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 031461 101 QAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMEL 136 (159)
Q Consensus 101 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 136 (159)
.+....|.|++|...+++.+.-+|.+......+..+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 357899999999999999998887776555544444
No 347
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=39.72 E-value=24 Score=16.06 Aligned_cols=14 Identities=43% Similarity=0.425 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhc
Q 031461 109 LEKAEADIKRALTI 122 (159)
Q Consensus 109 ~~~A~~~~~~al~~ 122 (159)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666543
No 348
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=39.44 E-value=50 Score=19.18 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=23.5
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRAL 120 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 120 (159)
..+++..+..+.-..+.|+|++|...++.+-
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~ 45 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQSR 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567777777888888888888887777663
No 349
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.40 E-value=48 Score=18.18 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=10.1
Q ss_pred HHhhCCHHHHHHHHHHHHh
Q 031461 103 HLKTSELEKAEADIKRALT 121 (159)
Q Consensus 103 ~~~~~~~~~A~~~~~~al~ 121 (159)
.-..|+|++|+..|..++.
T Consensus 23 ~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 23 LDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3444566666555555543
No 350
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=39.16 E-value=1e+02 Score=22.76 Aligned_cols=98 Identities=10% Similarity=0.074 Sum_probs=54.1
Q ss_pred HHHHHHHhhhHHHHcccHHHHHHHHHHHHHH----------hcccCC----CCh---HH--HHH---------HHHHHHH
Q 031461 9 ACERKKHDGNLLFRAGKYWRASKKYEKAAKI----------IEFHHS----FTD---DE--KHQ---------ANGLRLS 60 (159)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------~~~~~~----~~~---~~--~~~---------~~~~~~~ 60 (159)
....+..+++.+...|+|.+|.-++..+..+ .+.+.. ..+ ++ ... .......
T Consensus 10 ~~~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ 89 (428)
T 2wm9_A 10 RKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLME 89 (428)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHH
Confidence 3566788899999999999999998633332 111100 000 00 000 0111222
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS 107 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 107 (159)
++...+..+.+-+.|+.|+..|+.++...... .-+-.++.++..+.
T Consensus 90 ll~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~-~dy~~Ls~~~~~~a 135 (428)
T 2wm9_A 90 LLEQCADGLWKAERYELIADIYKLIIPIYEKR-RDFERLAHLYDTLH 135 (428)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHTTTHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 45555666666777888888887777554322 23445555555443
No 351
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.87 E-value=74 Score=19.91 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=38.1
Q ss_pred HHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Q 031461 77 ETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSELEKAEADIKRALTID 123 (159)
Q Consensus 77 ~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 123 (159)
++...|..... +....+..|...|..+...|++.+|...|+.+++..
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 36666666654 445678888889999999999999999999999764
No 352
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=37.33 E-value=0.23 Score=37.91 Aligned_cols=100 Identities=15% Similarity=0.067 Sum_probs=69.1
Q ss_pred HHhhhHHHHcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhhcC----
Q 031461 14 KHDGNLLFRAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLELE---- 89 (159)
Q Consensus 14 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 89 (159)
..-|+.+|..|.|+.|.-+|.. ... |..+|.|+..+|+|..|+...++|-...
T Consensus 148 q~VGDrcf~e~lYeAAKilys~--------isN---------------~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNN--------VSN---------------FGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGG--------SCC---------------CTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHh--------Ccc---------------HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 4578999999999999888852 121 5677777777777777766655542111
Q ss_pred ------------------------CccHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 031461 90 ------------------------PLNVKALYRRSQAHLKTSELEKAEADIKRALTIDPNNRVVKLVYMELKDK 139 (159)
Q Consensus 90 ------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 139 (159)
|+. +-.+...|...|-|++=+..++.++.++..+-.+..+++.+..+
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvhade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 275 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCCSSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHHhCchHHHHHHHhcchhcccHHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Confidence 111 11133446677888888888999999988888888888887644
No 353
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.72 E-value=80 Score=20.01 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhC
Q 031461 30 SKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTS 107 (159)
Q Consensus 30 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~ 107 (159)
...+.+|+.....++.+.++ +....+|...+.+. ..+...|..... +....+..|...|..+...|
T Consensus 43 ~~lLErc~~~f~~~~~YknD------~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSD------PRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTC------HHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhhhhccC------HHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC
Confidence 44677777765544433221 33455555555543 335556666654 45667888888999999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 031461 108 ELEKAEADIKRALTID 123 (159)
Q Consensus 108 ~~~~A~~~~~~al~~~ 123 (159)
++.+|...|+.++...
T Consensus 111 ~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999999875
No 354
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=35.82 E-value=61 Score=19.05 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=21.8
Q ss_pred CccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 90 PLNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
..+++..+..+.-..+.|+|++|...++.+
T Consensus 19 aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 19 SGNARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346666777777777888888887777666
No 355
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=39.40 E-value=9 Score=30.24 Aligned_cols=51 Identities=16% Similarity=0.129 Sum_probs=44.6
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhCCHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTSELEKA 112 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~A 112 (159)
....|...+..|+|.-|.+.++.++..+|++..+...++.+|.++|--.+.
T Consensus 464 ~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 464 VLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 455677778899999999999999999999999999999999999866554
No 356
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.64 E-value=82 Score=18.87 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=25.8
Q ss_pred cCCccHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 031461 88 LEPLNVKALYRRSQAHLKTSELEKAEADIKRA 119 (159)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 119 (159)
....+++..+..|.-..+.|+|++|...++.+
T Consensus 32 ~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 32 LNSGNARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34467788888888888999999998888776
No 357
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=32.53 E-value=1.1e+02 Score=20.42 Aligned_cols=71 Identities=10% Similarity=0.139 Sum_probs=48.1
Q ss_pred hhCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHhhC--CHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHH
Q 031461 72 LEDYSETSSLCTKVLELEPLNVKALYRRSQAHLKTS--ELEKAEADIKRALTIDPNN-----RVVKLVYMELKDKQRE 142 (159)
Q Consensus 72 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~ 142 (159)
...-..|+.+|..+++..|.++.-.+..-.-|.... |-.=.+..|+.+...+|.. +.+...+..|..++.+
T Consensus 105 n~rrr~Ale~y~~ALq~~pP~~~~vl~aLk~yirae~KDR~Htl~hf~Hv~~~dpe~A~~~k~~vl~hL~~Id~r~Nq 182 (219)
T 3pmr_A 105 NDQRRAALEGFLAALQADPPQAERVLLALRRYLRAEQKEQRHTLRHYQHVAAVDPEKAQQMRFQVHTHLQVIEERVNQ 182 (219)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHhhcchHHHHHHHHHHHHHhh
Confidence 345677899999999999888776666555555443 3333788899998888853 4455555555555443
No 358
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.42 E-value=1.1e+02 Score=20.21 Aligned_cols=86 Identities=8% Similarity=0.006 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHhhCC
Q 031461 31 KKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSETSSLCTKVLE--LEPLNVKALYRRSQAHLKTSE 108 (159)
Q Consensus 31 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~ 108 (159)
..+.+|+.....++.+.++ +....+|...+.++ ..+...++...|..... +....+..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND------~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRND------PRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTC------HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCC------HHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC
Confidence 5677777766554433221 33455555555543 12225577777777665 456678888889999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 031461 109 LEKAEADIKRALTID 123 (159)
Q Consensus 109 ~~~A~~~~~~al~~~ 123 (159)
+.+|...|+.++...
T Consensus 131 ~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 131 FLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999764
No 359
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=30.64 E-value=60 Score=16.67 Aligned_cols=51 Identities=14% Similarity=0.019 Sum_probs=26.6
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHhhcCCcc-HHHHHHHHHHHHhhCCHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVLELEPLN-VKALYRRSQAHLKTSELEKAE 113 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~A~ 113 (159)
+..+|..-......++|....+ .+...+.. ..+-.-+...+...|+|++|+
T Consensus 9 LAe~AL~~TG~HcH~EA~tIA~-~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 9 LAELALAGTGHHCHQEAASIAD-WLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHH-HHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHccchHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 3455555556778888866554 45555543 334455666788899998885
No 360
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=30.40 E-value=1.6e+02 Score=21.85 Aligned_cols=30 Identities=10% Similarity=-0.059 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
..++-.+|.+|...|+|++|....+.++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 346777999999999999999999999853
No 361
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=30.12 E-value=89 Score=23.00 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.1
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
|..+|-++.+.+++.+|+.....+-
T Consensus 299 YtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 299 YTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchHHHHHHHHHHHH
Confidence 6678889999999999999877653
No 362
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=29.42 E-value=91 Score=18.43 Aligned_cols=17 Identities=6% Similarity=0.010 Sum_probs=8.3
Q ss_pred HHHHHHHHHhcCCCcHH
Q 031461 112 AEADIKRALTIDPNNRV 128 (159)
Q Consensus 112 A~~~~~~al~~~p~~~~ 128 (159)
|+..|..++...|.++.
T Consensus 44 Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 44 AVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHhccCCHH
Confidence 34444444555655554
No 363
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=29.18 E-value=1.8e+02 Score=21.85 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCCc-----------cHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 75 YSETSSLCTKVLELEPL-----------NVKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
|+..+.+++.|+..-|. ...|+-.+|.+|...++|++|....+.++..
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666654332 2457888999999999999999999999853
No 364
>3jys_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=28.09 E-value=1.8e+02 Score=21.82 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=14.8
Q ss_pred hhhCHHHHHHHHHHHhh
Q 031461 71 KLEDYSETSSLCTKVLE 87 (159)
Q Consensus 71 ~~~~~~~A~~~~~~al~ 87 (159)
..++|++|...++++|.
T Consensus 206 ~~~~~~~A~~~a~~vi~ 222 (499)
T 3jys_A 206 GKARYTECINACNEVIK 222 (499)
T ss_dssp SSCCHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHh
Confidence 56899999999999985
No 365
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=28.03 E-value=1.9e+02 Score=21.51 Aligned_cols=30 Identities=17% Similarity=-0.098 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALTI 122 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 122 (159)
..+.-.+|.+|...++|++|....+.++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 457788999999999999999999999864
No 366
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=27.24 E-value=1.3e+02 Score=22.46 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhcCC--------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 75 YSETSSLCTKVLELEP--------LNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
|+..+.+++.|+..-| +...++-.+|.+|...++|++|....+.++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4455666666665433 2245777899999999999999999988864
No 367
>3l22_A SUSD superfamily protein; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.05A {Bacteroides fragilis}
Probab=27.12 E-value=47 Score=24.49 Aligned_cols=28 Identities=4% Similarity=0.095 Sum_probs=22.6
Q ss_pred HHHHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 59 LSCYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 59 ~~~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
..++..+|.+++-+++|++|...++.+|
T Consensus 201 ~aA~allarvyL~~~~~~~A~~~a~~vi 228 (441)
T 3l22_A 201 AAANMLKMRVYMAMNEWDKAITAGELVT 228 (441)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3456677888888899999999988886
No 368
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=26.18 E-value=1.1e+02 Score=18.51 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=8.8
Q ss_pred ccHHHHHHHHHHHHH
Q 031461 24 GKYWRASKKYEKAAK 38 (159)
Q Consensus 24 ~~~~~A~~~~~~al~ 38 (159)
++.+++...+.+|..
T Consensus 4 ~~~ee~~~wl~~A~~ 18 (141)
T 3o10_A 4 GNPVEARRWLRQARA 18 (141)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 455666666666554
No 369
>1dpj_B IA3, proteinase inhibitor IA3 peptide; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: a.137.7.1 PDB: 1g0v_B*
Probab=25.06 E-value=51 Score=14.07 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Q 031461 135 ELKDKQREYAKYQAEIFGTMLSKMG 159 (159)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (159)
.+....++.-+.+.+..+..|++|.
T Consensus 9 eifqsskeklqgdakvvsdafkkma 33 (33)
T 1dpj_B 9 EIFQSSKEKLQGDAKVVSDAFKKMA 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHhHHHhccchHHHHHHHHhcC
Confidence 3344445555667778888888774
No 370
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.04 E-value=1.2e+02 Score=22.80 Aligned_cols=24 Identities=13% Similarity=0.139 Sum_probs=20.6
Q ss_pred HhhHHHHHhhhhCHHHHHHHHHHH
Q 031461 62 YLNNAACKLKLEDYSETSSLCTKV 85 (159)
Q Consensus 62 ~~~~a~~~~~~~~~~~A~~~~~~a 85 (159)
|..+|-++...+++.+|+.....+
T Consensus 321 YtYlgGy~yR~~~~reAl~~WA~A 344 (550)
T 3u84_A 321 YMYLAGYHCRNRNVREALQAWADT 344 (550)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eeecchhhhhcchHHHHHHHHHHH
Confidence 667888999999999999987665
No 371
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=24.91 E-value=1.8e+02 Score=20.90 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 93 VKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
+.+++..|......+++-+|+.+++.+..
T Consensus 252 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 280 (363)
T 3rau_A 252 AVAHLHMGKQAEEQQKFGERVAYFQSALD 280 (363)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHH
Confidence 44566677777777888888887776654
No 372
>1wol_A ST0689, 122AA long conserved hypothetical protein; alpha helix, loop, unknown function; 1.62A {Sulfolobus tokodaii}
Probab=24.35 E-value=1.1e+02 Score=17.75 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
.-+..+......+...+..|.|+.|.-...++++.
T Consensus 6 ~wl~~A~~dL~~A~~~~~~g~y~~a~f~aqQa~Ek 40 (122)
T 1wol_A 6 DWIKQAERDLEEARYAKSGGYYELACFLSQQCAEK 40 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 35667888888898889999998888777776664
No 373
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=24.15 E-value=1.1e+02 Score=17.78 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAAKI 39 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 39 (159)
.-+..+......+...+..|.|+.|.-...++++.
T Consensus 6 ~w~~~A~~~L~~A~~~~~~g~y~~a~f~a~qa~Ek 40 (127)
T 1ufb_A 6 DWLEQARHNLRHAQGSLGLGDYAWACFAAQQAAEA 40 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 35667888888888889999998887777776664
No 374
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=24.05 E-value=49 Score=13.47 Aligned_cols=11 Identities=18% Similarity=0.467 Sum_probs=6.4
Q ss_pred HHHHHHHhhhc
Q 031461 148 AEIFGTMLSKM 158 (159)
Q Consensus 148 ~~~~~~~~~~~ 158 (159)
++.|+++|+++
T Consensus 7 rkkfkklfkkl 17 (27)
T 2ket_A 7 RKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 44566666654
No 375
>2hsb_A Hypothetical UPF0332 protein AF0298; DUF103 family, structural genomics, joint center for structu genomics, JCSG; HET: MSE PG4; 1.95A {Archaeoglobus fulgidus}
Probab=23.46 E-value=1.2e+02 Score=17.65 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHH
Q 031461 5 EKIEACERKKHDGNLLFRAGKYWRASKKYEKAA 37 (159)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 37 (159)
.-+..++.....+...+..|.|..|+-....++
T Consensus 7 ~~l~~A~~~L~~A~~~~~~g~y~~a~~~ay~a~ 39 (126)
T 2hsb_A 7 LRIRKAEKLVQDAKKEFEMGLYERCCSTAYYAM 39 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356788888999999999999997755443333
No 376
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=22.83 E-value=1.4e+02 Score=22.39 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=21.7
Q ss_pred HHhhHHHHHhhhhCHHHHHHHHHHHh
Q 031461 61 CYLNNAACKLKLEDYSETSSLCTKVL 86 (159)
Q Consensus 61 ~~~~~a~~~~~~~~~~~A~~~~~~al 86 (159)
.|..+|-++...++|.+|+..+..+-
T Consensus 305 PYtYlgG~~~R~~~~~eAl~~wa~aa 330 (489)
T 4gq4_A 305 PYMYLAGYHCRNRNVREALQAWADTA 330 (489)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ceeecchHHHHhhhHHHHHHHhhhhh
Confidence 46677888899999999999888764
No 377
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=22.26 E-value=1.4e+02 Score=18.02 Aligned_cols=36 Identities=14% Similarity=-0.037 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKA 36 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 36 (159)
||..|-...+..+.+++..+-+.|.+.+---+-++.
T Consensus 32 MS~~EL~~EI~~L~EKaRKAEq~Gi~NE~aV~erKi 67 (128)
T 1sf9_A 32 MTPHELNTEIALLSEKARKAEQHGIINELAVLERKI 67 (128)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 788888888999999999999999988765554443
No 378
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=21.67 E-value=89 Score=23.12 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=30.6
Q ss_pred HhhhHHH-HcccHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHhhHHHHHhhhhCHHH
Q 031461 15 HDGNLLF-RAGKYWRASKKYEKAAKIIEFHHSFTDDEKHQANGLRLSCYLNNAACKLKLEDYSE 77 (159)
Q Consensus 15 ~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 77 (159)
..+..+| +.+.|+.|+..|+.++.......+ |..++.++..+.++-+
T Consensus 92 ~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~d----------------y~~Ls~~~~~~a~~y~ 139 (428)
T 2wm9_A 92 EQCADGLWKAERYELIADIYKLIIPIYEKRRD----------------FERLAHLYDTLHRAYS 139 (428)
T ss_dssp HHHHHHHHHTTCGGGHHHHHTTTHHHHHHTTC----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhcC----------------HHHHHHHHHHHHHHHH
Confidence 4444444 556789999999888887665422 6677777766655443
No 379
>3ckc_A SUSD; TPR repeat, carbohydrate binding, starch binding, sugar BIND protein; HET: MES; 1.50A {Bacteroides thetaiotaomicron} SCOP: a.118.8.6 PDB: 3ck8_A* 3ck9_A* 3ckb_A* 3ck7_A*
Probab=21.41 E-value=2.6e+02 Score=20.87 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.2
Q ss_pred HHhhHHHHHhh------hhCHHHHHHHHHHHhh
Q 031461 61 CYLNNAACKLK------LEDYSETSSLCTKVLE 87 (159)
Q Consensus 61 ~~~~~a~~~~~------~~~~~~A~~~~~~al~ 87 (159)
++..+|.+++- .++|++|...++++|.
T Consensus 199 A~allArvyL~~~~~~~~~~~~~A~~~a~~vi~ 231 (527)
T 3ckc_A 199 NWLLRARLYLNAGVYTGQTDYAKAEEYASKVIG 231 (527)
T ss_dssp HHHHHHHHHHTHHHHHSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhccCchhHHHHHHHHHHHHh
Confidence 34444444443 3799999999999985
No 380
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.20 E-value=1.2e+02 Score=16.96 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=7.5
Q ss_pred HHHHHHHHHhcCCCcH
Q 031461 112 AEADIKRALTIDPNNR 127 (159)
Q Consensus 112 A~~~~~~al~~~p~~~ 127 (159)
|+..|..++...|+..
T Consensus 41 Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 41 GIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHCCCHH
Confidence 3444444455555543
No 381
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=21.17 E-value=1.4e+02 Score=17.67 Aligned_cols=37 Identities=14% Similarity=-0.041 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHhhhHHHHcccHHHHHHHHHHHH
Q 031461 1 MDTHEKIEACERKKHDGNLLFRAGKYWRASKKYEKAA 37 (159)
Q Consensus 1 ~s~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 37 (159)
||..|-...+..+.+++..+-+.|.+.+---+-++.+
T Consensus 14 MS~~EL~~EI~~L~ekarKAEq~G~~nE~aV~erK~~ 50 (115)
T 2yxy_A 14 MTKEELQQEIAMLTEKARKAEQMGMVNEYAVYERKIA 50 (115)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 7888888899999999999999999887665555443
No 382
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=20.90 E-value=93 Score=15.55 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCCc
Q 031461 110 EKAEADIKRALTIDPNN 126 (159)
Q Consensus 110 ~~A~~~~~~al~~~p~~ 126 (159)
+-|++++..++.++|++
T Consensus 31 eVAiqCi~~aF~v~~~d 47 (52)
T 4gof_A 31 EVAIQCLETAFGVTVED 47 (52)
T ss_dssp HHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCccc
Confidence 34566666666666654
No 383
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=20.81 E-value=2.8e+02 Score=21.01 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhcCC-------------ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHh
Q 031461 75 YSETSSLCTKVLELEP-------------LNVKALYRRSQAHLKTSELEKAEADIKRALT 121 (159)
Q Consensus 75 ~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 121 (159)
++..+.+++.|+..-| +...|+-.+|.++...++|++|....+.++.
T Consensus 167 ~~~I~~DL~~A~~~Lp~~~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~a~~vi~ 226 (528)
T 3i4g_A 167 LKWCVTEFTAAAADLPRFSAIPAGEAGRACKQAALAFLGRTCMLQKDWKSGAKAFHDIME 226 (528)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCGGGTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCcccCCcCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444555666655434 1245778899999999999999999999875
No 384
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.31 E-value=2.8e+02 Score=20.88 Aligned_cols=29 Identities=3% Similarity=-0.040 Sum_probs=20.9
Q ss_pred HHHhhHHHHHhhh--------hCHHHHHHHHHHHhhc
Q 031461 60 SCYLNNAACKLKL--------EDYSETSSLCTKVLEL 88 (159)
Q Consensus 60 ~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~ 88 (159)
.++..+|.+|+-. ++|++|...++.+|..
T Consensus 197 aA~allarvyL~~a~~~~~~~~~~~~A~~~a~~vi~~ 233 (535)
T 3ihv_A 197 AALGLLTKVYATWAGYPVKDESKWEAAAKTARILVES 233 (535)
T ss_dssp HHHHHHHHHHHHHHSTTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCcccCHHHHHHHHHHHHHHHhc
Confidence 3455556666554 5799999999999864
Done!