BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031462
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8XKG6|DPYD_CAEBR Probable dihydropyrimidine dehydrogenase [NADP(+)]
OS=Caenorhabditis briggsae GN=dpyd-1 PE=3 SV=2
Length = 1053
Score = 33.1 bits (74), Expect = 0.82, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 27 IGGWAMNRAIE--HGFVIGPSFELPAHFSPI 55
I W M+R I+ HG V+G + ELP F+PI
Sbjct: 522 IAAWNMHRYIQAKHGNVLGETPELPKFFTPI 552
>sp|Q8D8Y7|Y2828_VIBVU Putative transport protein VV1_2828 OS=Vibrio vulnificus (strain
CMCP6) GN=VV1_2828 PE=3 SV=2
Length = 560
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 8 PVASLLLVLNFCMFVIVLGIGGWAMNRAIEHGFVIGPSF---ELPAHFSPIYFPMGNAAT 64
P +L +V + + + ++GIG A + EH +GP P++F A
Sbjct: 440 PQGALNMVKDLGLMIFMVGIGLSAGGKMFEHLTQVGPQIIGIAFLVSVVPVFFAYLVGAY 499
Query: 65 GFFVTFALIAG-VVGAASCIAGLNHVRVWTADSMPAAASAATIA 107
+ AL+ G ++GA +C ++ V + ++PA A T A
Sbjct: 500 VLKMNRALLFGAIIGARTCAPAMDIVNEYAKSTIPALGYAGTYA 543
>sp|Q7MLI9|Y1438_VIBVY Putative transport protein VV1438 OS=Vibrio vulnificus (strain
YJ016) GN=VV1438 PE=3 SV=2
Length = 560
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 8 PVASLLLVLNFCMFVIVLGIGGWAMNRAIEHGFVIGPSF---ELPAHFSPIYFPMGNAAT 64
P +L +V + + + ++GIG A + EH +GP P++F A
Sbjct: 440 PQGALNMVKDLGLMIFMVGIGLSAGGKMFEHLTQVGPQIIGIAFLVSVVPVFFAYLVGAY 499
Query: 65 GFFVTFALIAG-VVGAASCIAGLNHVRVWTADSMPAAASAATIA 107
+ AL+ G ++GA +C ++ V + ++PA A T A
Sbjct: 500 VLKMNRALLFGAIIGARTCAPAMDIVNEYAKSTIPALGYAGTYA 543
>sp|B7VPS1|Y1837_VIBSL Putative transport protein VS_1837 OS=Vibrio splendidus (strain
LGP32) GN=VS_1837 PE=3 SV=1
Length = 560
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 8 PVASLLLVLNFCMFVIVLGIGGWAMNRAIEHGFVIGPS---FELPAHFSPIYFPMGNAAT 64
P +L +V + + ++GIG A + EH +GP L P++F A
Sbjct: 440 PQGALNMVKDLGLMFFMVGIGLSAGGKIFEHLTQVGPQVIGIALIVSVLPVFFAYLVGAY 499
Query: 65 GFFVTFALIAG-VVGAASCIAGLNHVRVWTADSMPAAASAAT--IAWTLTLLAAGF 117
+ AL+ G ++GA +C ++ V ++PA A T IA L LA F
Sbjct: 500 ALKMNRALLFGAIIGARTCAPAMDIVNDHARSTIPALGYAGTYAIANILMTLAGTF 555
>sp|Q9SRE4|UGAL2_ARATH UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2
PE=2 SV=1
Length = 347
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 24 VLGIGGWAMNRAIEHGFVIGPSFELPAHFSPIYFPMGNAATGFFVTFALIAGVVGAASCI 83
V +G WAMN G ++ + + S F TGF F + G+V A+ +
Sbjct: 12 VSDVGAWAMNVISSVGIIMANKQLMSS--SGFGFGFATTLTGFHFAFTALVGMVSNATGL 69
Query: 84 AGLNHVRVWTA--DSMPAAASAATIAWTLTLLAAGF 117
+ HV +W S+ A S A + ++L L + GF
Sbjct: 70 SASKHVPLWELLWFSIVANISIAAMNFSLMLNSVGF 105
>sp|A5IF82|KUP3_LEGPC Probable potassium transport system protein kup 3 OS=Legionella
pneumophila (strain Corby) GN=kup3 PE=3 SV=1
Length = 629
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 25 LGIGGWAMNRAIEHGFVIGPSFELPAHFSPIY---FPMGNAATGFFVTFALIAGVVGAAS 81
L IG I+H FV+ A +P+Y F N ATGFF+ + V GA +
Sbjct: 184 LTIGILGAREVIQHPFVL-------AAINPVYGLNFLFSNGATGFFILCGVFLCVTGAEA 236
Query: 82 CIAGLNH 88
A L H
Sbjct: 237 LYADLGH 243
>sp|Q5WU69|KUP3_LEGPL Probable potassium transport system protein kup 3 OS=Legionella
pneumophila (strain Lens) GN=kup3 PE=3 SV=1
Length = 629
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 25 LGIGGWAMNRAIEHGFVIGPSFELPAHFSPIY---FPMGNAATGFFVTFALIAGVVGAAS 81
L IG I+H FV+ A +P+Y F N ATGFF+ + V GA +
Sbjct: 184 LTIGILGARGVIQHPFVL-------AAINPVYGLNFLFSNGATGFFILCGVFLCVTGAEA 236
Query: 82 CIAGLNH 88
A L H
Sbjct: 237 LYADLGH 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.139 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,003,071
Number of Sequences: 539616
Number of extensions: 1930208
Number of successful extensions: 6280
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 6267
Number of HSP's gapped (non-prelim): 23
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)