Query 031462
Match_columns 159
No_of_seqs 77 out of 79
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 23:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p06_A Hypothetical protein AF 24.2 36 0.0012 25.2 1.9 11 12-22 88-98 (114)
2 1ro7_A Alpha-2,3/8-sialyltrans 21.5 34 0.0011 27.9 1.4 22 102-126 131-153 (259)
3 1afo_A Glycophorin A; integral 21.2 60 0.002 20.5 2.2 17 65-81 12-28 (40)
4 1q90_M Cytochrome B6F complex 21.1 36 0.0012 21.3 1.2 27 102-128 8-36 (39)
5 2p2v_A Alpha-2,3-sialyltransfe 19.2 41 0.0014 28.2 1.5 15 110-124 154-168 (288)
6 3lbw_A M2 protein; proton chan 15.8 51 0.0017 18.6 0.9 16 79-94 4-19 (23)
7 1y2y_A Ribosome biogenesis pro 15.1 48 0.0016 22.4 0.7 9 48-56 31-39 (58)
8 1fjk_A Cardiac phospholamban; 15.1 91 0.0031 20.5 2.1 12 14-25 31-42 (52)
9 2apo_B Ribosome biogenesis pro 14.7 48 0.0016 22.2 0.7 9 48-56 32-40 (60)
10 2aus_D NOP10, ribosome biogene 13.4 55 0.0019 22.0 0.7 9 48-56 31-39 (60)
No 1
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=24.25 E-value=36 Score=25.22 Aligned_cols=11 Identities=64% Similarity=1.201 Sum_probs=9.1
Q ss_pred HHHHHHHHHHH
Q 031462 12 LLLVLNFCMFV 22 (159)
Q Consensus 12 ~LL~lN~~mY~ 22 (159)
+|=+.|||||+
T Consensus 88 lldvanfcmyl 98 (114)
T 2p06_A 88 LLDVANFCMYL 98 (114)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45688999997
No 2
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=21.55 E-value=34 Score=27.88 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhchhcceeec-cc
Q 031462 102 SAATIAWTLTLLAAGFACKEIEL-HI 126 (159)
Q Consensus 102 a~a~iAWaLTlLAmGlACKEI~l-g~ 126 (159)
++++. ...+|.-++||||++ |-
T Consensus 131 stGl~---~~~lA~~lGckeIyLyG~ 153 (259)
T 1ro7_A 131 TSGVY---MCAVAIALGYKEIYLSGI 153 (259)
T ss_dssp CHHHH---HHHHHHHHTCCEEEEESC
T ss_pred CHHHH---HHHHHHHCCCCEEEEEeE
Confidence 44554 466788899999999 64
No 3
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.18 E-value=60 Score=20.53 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 031462 65 GFFVTFALIAGVVGAAS 81 (159)
Q Consensus 65 ~ffv~faLiAgVVG~aS 81 (159)
--.++|+.+|||+|.-=
T Consensus 12 i~lII~~vmaGiIG~Il 28 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTIL 28 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34689999999999743
No 4
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=21.11 E-value=36 Score=21.34 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH--HHhchhcceeeccccc
Q 031462 102 SAATIAWTLTL--LAAGFACKEIELHIRN 128 (159)
Q Consensus 102 a~a~iAWaLTl--LAmGlACKEI~lg~R~ 128 (159)
.++.+.|.+|+ ||.||.-=+|+-+.+.
T Consensus 8 ~~A~i~~~L~LvGla~Gf~LLkiqg~~ee 36 (39)
T 1q90_M 8 GTALTMVGMTLVGLAIGFVLLRVESLVEE 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcchhh
Confidence 35778888888 6777766555544443
No 5
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=19.16 E-value=41 Score=28.17 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.5
Q ss_pred HHHHHhchhcceeec
Q 031462 110 LTLLAAGFACKEIEL 124 (159)
Q Consensus 110 LTlLAmGlACKEI~l 124 (159)
...+|..++||||++
T Consensus 154 ~l~iA~~lGckeIyL 168 (288)
T 2p2v_A 154 MCAIAIALGYKTIYL 168 (288)
T ss_dssp HHHHHHHHTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 356788889999999
No 6
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=15.81 E-value=51 Score=18.62 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.2
Q ss_pred HHHHhhhhhhhhccCC
Q 031462 79 AASCIAGLNHVRVWTA 94 (159)
Q Consensus 79 ~aS~l~Gl~Hvr~W~~ 94 (159)
+++++.|+.|+--|--
T Consensus 4 ~aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 4 VAASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4677889999887743
No 7
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=15.10 E-value=48 Score=22.36 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=7.1
Q ss_pred CCCCcCccc
Q 031462 48 LPAHFSPIY 56 (159)
Q Consensus 48 ~pa~~~Piy 56 (159)
-||+|||..
T Consensus 31 hPaRFSPdD 39 (58)
T 1y2y_A 31 HPARFSPDD 39 (58)
T ss_dssp CSSSSCSCT
T ss_pred CCCCCCCCc
Confidence 399999953
No 8
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=15.06 E-value=91 Score=20.47 Aligned_cols=12 Identities=50% Similarity=1.190 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q 031462 14 LVLNFCMFVIVL 25 (159)
Q Consensus 14 L~lN~~mY~ivl 25 (159)
|++|||+-+|-+
T Consensus 31 lfvnfclilicl 42 (52)
T 1fjk_A 31 LFINFCLILIFL 42 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999877654
No 9
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=14.70 E-value=48 Score=22.23 Aligned_cols=9 Identities=33% Similarity=0.290 Sum_probs=7.1
Q ss_pred CCCCcCccc
Q 031462 48 LPAHFSPIY 56 (159)
Q Consensus 48 ~pa~~~Piy 56 (159)
-||+|||..
T Consensus 32 hParfSp~D 40 (60)
T 2apo_B 32 KPPKFSLED 40 (60)
T ss_dssp CCCCCCTTC
T ss_pred CCCCCCCCc
Confidence 399999953
No 10
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=13.42 E-value=55 Score=21.99 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=7.0
Q ss_pred CCCCcCccc
Q 031462 48 LPAHFSPIY 56 (159)
Q Consensus 48 ~pa~~~Piy 56 (159)
-|++|||..
T Consensus 31 hParfSP~D 39 (60)
T 2aus_D 31 HPPRFSPED 39 (60)
T ss_dssp SCCCCCSCC
T ss_pred CCCCCCCCC
Confidence 399999953
Done!