Query 031462
Match_columns 159
No_of_seqs 77 out of 79
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 23:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031462.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031462hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p06a1 a.204.1.3 (A:1-84) Hyp 29.6 12 0.00089 24.8 1.9 11 12-22 67-77 (84)
2 d1x3ca1 g.37.1.1 (A:8-68) Zinc 19.3 23 0.0016 22.4 1.6 14 44-58 7-20 (61)
3 d2aqaa1 g.41.16.1 (A:2-58) H/a 17.0 18 0.0013 22.8 0.7 9 48-56 30-38 (57)
4 d1vf5c3 f.23.23.1 (C:250-286) 11.2 85 0.0062 18.0 2.5 23 128-150 3-25 (37)
5 d2apob1 g.41.16.1 (B:403-457) 11.0 34 0.0025 21.2 0.7 9 48-56 30-38 (55)
6 d2ey4e1 g.41.16.1 (E:4-55) Rib 11.0 34 0.0025 21.0 0.7 9 48-56 28-36 (52)
7 d2fyma1 c.1.11.1 (A:140-431) E 9.1 38 0.0028 26.6 0.4 21 111-131 241-263 (292)
8 d1q90a3 f.23.23.1 (A:248-292) 8.5 1.2E+02 0.0086 18.0 2.5 23 128-150 2-24 (45)
9 d2heyr1 g.24.1.1 (R:83-142) Tu 7.6 51 0.0037 20.6 0.5 7 48-54 47-53 (60)
10 d1w6ta1 c.1.11.1 (A:138-433) E 7.0 54 0.004 25.6 0.5 21 111-131 245-267 (296)
No 1
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.56 E-value=12 Score=24.82 Aligned_cols=11 Identities=64% Similarity=1.201 Sum_probs=9.0
Q ss_pred HHHHHHHHHHH
Q 031462 12 LLLVLNFCMFV 22 (159)
Q Consensus 12 ~LL~lN~~mY~ 22 (159)
+|=+-|||||+
T Consensus 67 lldvanfcmyl 77 (84)
T d2p06a1 67 LLDVANFCMYL 77 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45688999997
No 2
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.32 E-value=23 Score=22.42 Aligned_cols=14 Identities=50% Similarity=1.082 Sum_probs=11.2
Q ss_pred CCCCCCCCcCccccc
Q 031462 44 PSFELPAHFSPIYFP 58 (159)
Q Consensus 44 ~~~~~pa~~~Piyfp 58 (159)
..+.+|-+||| |.|
T Consensus 7 ~~~e~pt~~sp-yrp 20 (61)
T d1x3ca1 7 QSLEFPTRYSP-YRP 20 (61)
T ss_dssp CCCCCSSSSCS-SCS
T ss_pred hhhcCccccCC-CCc
Confidence 45789999999 666
No 3
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.01 E-value=18 Score=22.80 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=7.2
Q ss_pred CCCCcCccc
Q 031462 48 LPAHFSPIY 56 (159)
Q Consensus 48 ~pa~~~Piy 56 (159)
-||+|||..
T Consensus 30 hPaRFSPdD 38 (57)
T d2aqaa1 30 HPARFSPDD 38 (57)
T ss_dssp CCCCCCSSS
T ss_pred CCCcCCccc
Confidence 499999953
No 4
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.17 E-value=85 Score=18.02 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=19.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 031462 128 NARLRTMEAFLIILSVTQLLYIA 150 (159)
Q Consensus 128 ~~rLrtLEaf~IIl~~TQLlY~l 150 (159)
+.|.+-+=+|..-...+|++.++
T Consensus 3 p~Rv~gl~~F~~~v~laQi~lVl 25 (37)
T d1vf5c3 3 PNRVKWMIAFICLVMLAQLMLIL 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999998875
No 5
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.98 E-value=34 Score=21.19 Aligned_cols=9 Identities=33% Similarity=0.290 Sum_probs=7.1
Q ss_pred CCCCcCccc
Q 031462 48 LPAHFSPIY 56 (159)
Q Consensus 48 ~pa~~~Piy 56 (159)
-|++|||..
T Consensus 30 ~P~rfSPeD 38 (55)
T d2apob1 30 KPPKFSLED 38 (55)
T ss_dssp CCCCCCTTC
T ss_pred CCCCCCCCc
Confidence 399999953
No 6
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=10.98 E-value=34 Score=20.99 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=7.0
Q ss_pred CCCCcCccc
Q 031462 48 LPAHFSPIY 56 (159)
Q Consensus 48 ~pa~~~Piy 56 (159)
-|++|||..
T Consensus 28 ~ParfSPeD 36 (52)
T d2ey4e1 28 HPPRFSPED 36 (52)
T ss_dssp SCCCCCTTC
T ss_pred CCCCCCCCc
Confidence 399999953
No 7
>d2fyma1 c.1.11.1 (A:140-431) Enolase {Escherichia coli [TaxId: 562]}
Probab=9.15 E-value=38 Score=26.56 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=16.6
Q ss_pred HHHHhchhcceeecc--ccccch
Q 031462 111 TLLAAGFACKEIELH--IRNARL 131 (159)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~rL 131 (159)
.=||.|+.|++|.+| .|+.|+
T Consensus 241 aDLAVg~ga~~iK~G~~~R~ER~ 263 (292)
T d2fyma1 241 ADLAVGTAAGQIKTGSMSRSDRV 263 (292)
T ss_dssp HHHHHHTTCEEEECCCSCSHHHH
T ss_pred HHHHHHhCCCeeecCCCcccchh
Confidence 348899999999997 666664
No 8
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.50 E-value=1.2e+02 Score=18.03 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 031462 128 NARLRTMEAFLIILSVTQLLYIA 150 (159)
Q Consensus 128 ~~rLrtLEaf~IIl~~TQLlY~l 150 (159)
+.|.+-|=+|.+-...+|.+.++
T Consensus 2 P~Rv~gll~F~~~v~laQi~LVL 24 (45)
T d1q90a3 2 PARIQGLLVFFSFVLLTQVLLVL 24 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999999998876
No 9
>d2heyr1 g.24.1.1 (R:83-142) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.62 E-value=51 Score=20.63 Aligned_cols=7 Identities=71% Similarity=1.360 Sum_probs=5.9
Q ss_pred CCCCcCc
Q 031462 48 LPAHFSP 54 (159)
Q Consensus 48 ~pa~~~P 54 (159)
+|-||||
T Consensus 47 ppghfsp 53 (60)
T d2heyr1 47 PPGHFSP 53 (60)
T ss_dssp CTTEECC
T ss_pred CCCccCC
Confidence 4889999
No 10
>d1w6ta1 c.1.11.1 (A:138-433) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=7.01 E-value=54 Score=25.62 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.4
Q ss_pred HHHHhchhcceeecc--ccccch
Q 031462 111 TLLAAGFACKEIELH--IRNARL 131 (159)
Q Consensus 111 TlLAmGlACKEI~lg--~R~~rL 131 (159)
.=||.|+.|+.|..| .|+.|.
T Consensus 245 adLAVg~~a~~iK~G~~~R~ER~ 267 (296)
T d1w6ta1 245 ADIAVATNAGQIKTGSLSRTDRI 267 (296)
T ss_dssp HHHHHHTTCCEEECCCSSSHHHH
T ss_pred HHHHHHcCCCeeecCCCcchhHH
Confidence 348899999999997 666664
Done!