BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031463
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|A Chain A, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|A Chain A, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|A Chain A, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|A Chain A, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|A Chain A, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|A Chain A, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|A Chain A, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|A Chain A, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 418
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 80 LDAGENFSSIEAQFDEFVMSFESELENISSPLPANDA----DALMKNMRVSISPKSSMEA 135
+D+G+ + + + +V+ S +++I P+ D L+++ V I P+ S+E
Sbjct: 168 IDSGDGVTHVIPVAEGYVIG--SCIKHI--PIAGRDITYFIQQLLRDREVGIPPEQSLET 223
Query: 136 AKYVEKPAKYVNP 148
AK V++ YV P
Sbjct: 224 AKAVKERYSYVCP 236
>pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida
Tropicalis Peroxisomal Multifunctional Enzyme Type 2
Length = 604
Score = 26.9 bits (58), Expect = 5.0, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 62 DDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVMSFESELENISSPLPANDADAL-- 119
D F VA + D D ++ Q+ F+++ + L N + LPANDA
Sbjct: 259 DQSFTAEVVAKRFSEILDYDDSRKPEYLKNQY-PFMLNDYATLTNEARKLPANDASGAPT 317
Query: 120 --MKNMRVSISPKSSMEAAKYVEKPAKY 145
+K+ V I+ + +Y + AKY
Sbjct: 318 VSLKDKVVLITGAGAGLGKEYAKWFAKY 345
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 13/107 (12%)
Query: 46 WLSQHQDEDGFYDNG-------GDDEFDVSNVADLLPDTFDLDAGENFSSIEAQFDEFVM 98
++ Q +D+ GF G+ E ++ + ++ GE+ + +E +F
Sbjct: 271 YMVQTEDQYGFIHEALLEAVGCGNTEVPARSLYTYIQKLAQVEPGEHVTGMELEFKRLAS 330
Query: 99 SFESELENISSPLPANDADALMKNM------RVSISPKSSMEAAKYV 139
S I++ LP N + N+ RV + P +E + Y+
Sbjct: 331 SKAHTSRFITASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYI 377
>pdb|2VNL|A Chain A, Mutant Y108wdel Of The Headbinding Domain Of Phage P22
Tailspike C-Terminally Fused To Isoleucine Zipper
Piigcn4 ( Chimera Ii)
Length = 151
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 8 STLNPNAPLFIPAAFRQVEDFSPEWWQLITTSTWYHNYWLSQHQDEDGFYDNGGDDEFDV 67
S + PL I AA + V ++ + +++T H+ YD G +
Sbjct: 56 SHVQITQPLIINAAGKIV--YNGQLVKIVTVQG--HSM---------AIYDANGSQVDYI 102
Query: 68 SNVADLLPDTFDLDAGENFSSIEAQFDEF---VMSFESELENISSPL 111
+NV PD + ++A + F IE + +E + E+E+ I +
Sbjct: 103 ANVLKWDPDQYSIEADKKFKQIEDKIEEILSKIYHIENEIARIKKLI 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,190,078
Number of Sequences: 62578
Number of extensions: 221481
Number of successful extensions: 453
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 450
Number of HSP's gapped (non-prelim): 8
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)